AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280008844.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008844.01.T01 MTR_2g450310 83.051 236 13 1 196 404 244 479 4.71e-126 374
MsG0280008844.01.T01 MTR_2g450310 56.459 209 54 4 40 219 3 203 5.86e-61 206
MsG0280008844.01.T01 MTR_2g450510 69.565 276 52 2 196 441 244 517 1.31e-125 374
MsG0280008844.01.T01 MTR_2g450510 53.110 209 61 5 40 219 3 203 1.16e-54 190
MsG0280008844.01.T01 MTR_1308s0010 78.626 131 28 0 196 326 18 148 2.50e-67 213
MsG0280008844.01.T01 MTR_2g020630 28.794 514 229 13 41 437 13 506 2.30e-60 205
MsG0280008844.01.T01 MTR_2g044140 29.323 532 215 15 41 436 13 519 3.17e-57 197
MsG0280008844.01.T01 MTR_2g043850 30.075 532 211 15 41 436 13 519 3.34e-57 197
MsG0280008844.01.T01 MTR_4g124800 38.372 258 128 4 207 436 267 521 2.84e-50 179
MsG0280008844.01.T01 MTR_6g037690 56.034 116 50 1 321 436 198 312 7.17e-40 145
MsG0280008844.01.T01 MTR_1088s0010 57.031 128 26 2 40 138 3 130 1.09e-38 137
MsG0280008844.01.T01 MTR_1372s0010 57.895 57 24 0 163 219 1 57 6.07e-14 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280008844.01.T01 AT5G45180 30.638 470 223 14 35 417 6 459 1.35e-57 196
MsG0280008844.01.T01 AT1G19250 38.760 258 128 3 207 436 263 518 1.13e-51 182

Find 95 sgRNAs with CRISPR-Local

Find 350 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGTTATAACTTATTGTTTA+TGG 0.072868 2:+39866321 MsG0280008844.01.T01:three_prime_UTR
AATAACTACATCTGTTTCTA+AGG 0.224263 2:-39864927 None:intergenic
CCCATGGAAAATCTGAAAAT+TGG 0.228440 2:-39860141 None:intergenic
CCCGGAGAACACTTCCTTCT+TGG 0.233331 2:+39864509 MsG0280008844.01.T01:CDS
ACACTTCCTTCTTGGCCTTT+TGG 0.237410 2:+39864517 MsG0280008844.01.T01:CDS
TGGAAAAGGATGTTAAATTA+TGG 0.238102 2:+39865848 MsG0280008844.01.T01:CDS
CAATATATAGCTTTATCTTT+TGG 0.265054 2:+39866190 MsG0280008844.01.T01:three_prime_UTR
GAAATATCTGCATGTCAAAT+TGG 0.294249 2:+39864791 MsG0280008844.01.T01:CDS
TACCTTTGTTGAGAAATTCT+TGG 0.304695 2:-39860388 None:intergenic
AGTGGTAATGGCAGTAGTTT+TGG 0.313462 2:+39860331 MsG0280008844.01.T01:CDS
TTATAATCAGTGGGCCTATA+TGG 0.314824 2:-39866015 None:intergenic
ATATGAAGTCATGGGAATTA+TGG 0.316758 2:+39860308 MsG0280008844.01.T01:CDS
TTAGTTTATCGACTCGTCTA+TGG 0.340131 2:+39866284 MsG0280008844.01.T01:three_prime_UTR
TCTTGAAGAAAACTATGATT+AGG 0.356221 2:-39864770 None:intergenic
CTTTGCATTGGGAAATATAG+TGG 0.362241 2:+39864039 MsG0280008844.01.T01:CDS
ATAACCAGCAATTTACAAAA+TGG 0.362970 2:+39859954 MsG0280008844.01.T01:CDS
TGCAAATATGCTCTACAGAT+TGG 0.376558 2:+39860023 MsG0280008844.01.T01:CDS
GGGAGGAACTCAGGAATGTT+TGG 0.394469 2:-39864066 None:intergenic
CTGAGCTATTTGAACCATAT+AGG 0.396930 2:+39866001 MsG0280008844.01.T01:CDS
CCCTGCCGGTCAATGGTCAT+TGG 0.402284 2:+39859865 MsG0280008844.01.T01:CDS
GGAAAAGGATGTTAAATTAT+GGG 0.406921 2:+39865849 MsG0280008844.01.T01:CDS
GCCAAGAAGGAAGTGTTCTC+CGG 0.407386 2:-39864510 None:intergenic
AAGTTGCCACTGAAGAAGTA+TGG 0.417922 2:+39864740 MsG0280008844.01.T01:CDS
TTGTTGAAACATATCTGAAA+TGG 0.425780 2:+39864717 MsG0280008844.01.T01:CDS
ATAATCTATATCAATGACTT+TGG 0.427553 2:-39860266 None:intergenic
AGCTTTAGCTTCTGCAAAGA+AGG 0.430511 2:+39864878 MsG0280008844.01.T01:CDS
TGTAATATGCCATGTTCCCT+TGG 0.438566 2:-39860355 None:intergenic
GCATTGTTACTTGTGGCATA+TGG 0.438868 2:+39865917 MsG0280008844.01.T01:CDS
TTATTCTTGCCACAGGATAT+AGG 0.444801 2:+39864945 MsG0280008844.01.T01:CDS
ATGATGGTGTTGGAGGACTA+TGG 0.447006 2:+39860072 MsG0280008844.01.T01:CDS
AGTTTGTTATTCTTTGCATT+GGG 0.451815 2:+39864028 MsG0280008844.01.T01:CDS
ATCCTATCATTGCCAATTGT+GGG 0.453863 2:-39865726 None:intergenic
GGCCACTTTACTTTCACCAT+TGG 0.455226 2:+39864538 MsG0280008844.01.T01:CDS
ACATCCTCGCATCCCACAAT+TGG 0.460278 2:+39865714 MsG0280008844.01.T01:CDS
GAGTTTGTTATTCTTTGCAT+TGG 0.462117 2:+39864027 MsG0280008844.01.T01:CDS
TTGTGATTTCTTTATCTCGA+TGG 0.463038 2:-39864855 None:intergenic
AACATTCCTGAGTTCCTCCC+TGG 0.466304 2:+39864069 MsG0280008844.01.T01:CDS
TATAGGCCCACTGATTATAA+TGG 0.468092 2:+39866018 MsG0280008844.01.T01:CDS
CCTGAGTTCCTCCCTGGAAA+AGG 0.469202 2:+39864075 MsG0280008844.01.T01:CDS
TTTATGGTAATGTTTAATGA+TGG 0.480787 2:+39866337 MsG0280008844.01.T01:three_prime_UTR
AACAAGACCATTATAATCAG+TGG 0.481998 2:-39866025 None:intergenic
AGAGTTGCAATTGTTGGTGC+AGG 0.491948 2:+39859981 MsG0280008844.01.T01:CDS
TATCCTATCATTGCCAATTG+TGG 0.493186 2:-39865727 None:intergenic
ACCAATGACCATTGACCGGC+AGG 0.493915 2:-39859866 None:intergenic
TCATCAGCTTCATATACAAC+AGG 0.497177 2:-39860053 None:intergenic
GTCATTGATATAGATTATGT+TGG 0.502491 2:+39860271 MsG0280008844.01.T01:CDS
ATCCCACAATTGGCAATGAT+AGG 0.504586 2:+39865724 MsG0280008844.01.T01:CDS
CAATGACCATTGACCGGCAG+GGG 0.509155 2:-39859864 None:intergenic
CTAGAAAATGTGCTAACCAT+TGG 0.509768 2:-39865792 None:intergenic
AAAAGACCCTTCTTTCTCCT+CGG 0.510420 2:-39865976 None:intergenic
ATACATGTTGGAGGGGTACA+TGG 0.515133 2:+39866114 MsG0280008844.01.T01:three_prime_UTR
TGGGAATTATGGAGTGGTAA+TGG 0.517223 2:+39860319 MsG0280008844.01.T01:CDS
GTGAAAGTAAAGTGGCCAAA+AGG 0.517743 2:-39864532 None:intergenic
GAGTCCAGATCCGCCCCTGC+CGG 0.517853 2:+39859851 None:intergenic
ATGTAATCCGAGGAGAAAGA+AGG 0.524125 2:+39865969 MsG0280008844.01.T01:CDS
AAGTGGCCAAAAGGCCAAGA+AGG 0.525815 2:-39864523 None:intergenic
TGACCATTGACCGGCAGGGG+CGG 0.528249 2:-39859861 None:intergenic
GATGTAGTTATTCTTGCCAC+AGG 0.531258 2:+39864938 MsG0280008844.01.T01:CDS
CTGATGAAGATATGAAGTCA+TGG 0.535713 2:+39860299 MsG0280008844.01.T01:CDS
GACGAGTCGATAAACTAAGA+AGG 0.538941 2:-39866279 None:intergenic
TATGAAGCTGATGATGGTGT+TGG 0.543117 2:+39860062 MsG0280008844.01.T01:CDS
TGATGTACTCAGATAGATGC+AGG 0.544025 2:-39859922 None:intergenic
CCAAGAAGGAAGTGTTCTCC+GGG 0.546254 2:-39864509 None:intergenic
ATAACTACATCTGTTTCTAA+GGG 0.546830 2:-39864926 None:intergenic
TAGTATAAAAGAGATGGAAA+AGG 0.548970 2:+39865834 MsG0280008844.01.T01:CDS
ATTGCCTAGTATAAAAGAGA+TGG 0.549328 2:+39865828 MsG0280008844.01.T01:CDS
GTTGTATATGAAGCTGATGA+TGG 0.564559 2:+39860056 MsG0280008844.01.T01:CDS
CACTTCAGCAGAATACATGT+TGG 0.565258 2:+39866102 MsG0280008844.01.T01:three_prime_UTR
GAAGCTGATGATGGTGTTGG+AGG 0.565452 2:+39860065 MsG0280008844.01.T01:CDS
TTGAACCAATGACCATTGAC+CGG 0.573374 2:-39859870 None:intergenic
TACCAATGGTGAAAGTAAAG+TGG 0.578127 2:-39864540 None:intergenic
TACCAAGAATTTCTCAACAA+AGG 0.578314 2:+39860386 MsG0280008844.01.T01:CDS
TTCAGCAGAATACATGTTGG+AGG 0.581199 2:+39866105 MsG0280008844.01.T01:three_prime_UTR
ACGAGTCGATAAACTAAGAA+GGG 0.584873 2:-39866278 None:intergenic
TGATGAAGATATGAAGTCAT+GGG 0.593792 2:+39860300 MsG0280008844.01.T01:CDS
TAAACTCCAAACCGAAAACA+AGG 0.595582 2:+39860115 MsG0280008844.01.T01:CDS
GGCAATGATAGGATATGCTG+AGG 0.603017 2:+39865735 MsG0280008844.01.T01:CDS
TGTAATCCGAGGAGAAAGAA+GGG 0.603199 2:+39865970 MsG0280008844.01.T01:CDS
AGATCATGCATTGTTACTTG+TGG 0.603581 2:+39865910 MsG0280008844.01.T01:CDS
TCAGCAGAATACATGTTGGA+GGG 0.608166 2:+39866106 MsG0280008844.01.T01:three_prime_UTR
CCAATGACCATTGACCGGCA+GGG 0.609057 2:-39859865 None:intergenic
GAGCATATTTGCAAGCAAGT+AGG 0.621227 2:-39860013 None:intergenic
TAAGTTATAACATAAACAGA+AGG 0.624571 2:-39866311 None:intergenic
ATTGTTGGTGCAGGAATCAG+TGG 0.624826 2:+39859990 MsG0280008844.01.T01:CDS
ACAAGACCATTATAATCAGT+GGG 0.627750 2:-39866024 None:intergenic
ACTAGTCCATACTTCTTCAG+TGG 0.645916 2:-39864746 None:intergenic
CTAATGAAATGAGATGCCAA+TGG 0.660576 2:+39865776 MsG0280008844.01.T01:CDS
GAGACATGAAATGTAATCCG+AGG 0.662039 2:+39865959 MsG0280008844.01.T01:CDS
TAGAGAAAGCACAACACTCG+TGG 0.665571 2:+39866144 MsG0280008844.01.T01:three_prime_UTR
AAGTCATGGGAATTATGGAG+TGG 0.671476 2:+39860313 MsG0280008844.01.T01:CDS
CAGCAGAATACATGTTGGAG+GGG 0.676165 2:+39866107 MsG0280008844.01.T01:three_prime_UTR
ATTGCCAATTGTGGGATGCG+AGG 0.681590 2:-39865718 None:intergenic
GGGAACATGGCATATTACAG+TGG 0.699925 2:+39860359 MsG0280008844.01.T01:CDS
GCAATGATAGGATATGCTGA+GGG 0.702690 2:+39865736 MsG0280008844.01.T01:CDS
ATGGTGTTGGAGGACTATGG+AGG 0.798552 2:+39860075 MsG0280008844.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATATATATATATATAT+AGG - Chr2:39865177-39865196 None:intergenic 0.0%
!! AATATATATATATATATATA+GGG - Chr2:39865164-39865145 None:intergenic 0.0%
!! AAAAAAAATTAAAGTTGTAT+TGG + Chr2:39862600-39862619 MsG0280008844.01.T01:intron 10.0%
!! ATATATATTTGAAAGATTAA+CGG + Chr2:39865266-39865285 MsG0280008844.01.T01:intron 10.0%
!! TATATTTGCATATTAAAAAA+TGG - Chr2:39861029-39861048 None:intergenic 10.0%
!!! TATTTTAGTTAACATTAATT+GGG + Chr2:39861250-39861269 MsG0280008844.01.T01:intron 10.0%
!!! TGAATATTGATATTTTTTTA+AGG + Chr2:39863376-39863395 MsG0280008844.01.T01:intron 10.0%
!!! TTATTTTAGTTAACATTAAT+TGG + Chr2:39861249-39861268 MsG0280008844.01.T01:intron 10.0%
!! AAAAATCAATGTGATTATTT+GGG - Chr2:39861957-39861976 None:intergenic 15.0%
!! AAATGAAATGAAATAATCAT+TGG + Chr2:39862478-39862497 MsG0280008844.01.T01:intron 15.0%
!! AAATTTAACTCATTAATTGT+CGG + Chr2:39861814-39861833 MsG0280008844.01.T01:intron 15.0%
!! AATTAAATGTTAGTTATCTT+TGG + Chr2:39863126-39863145 MsG0280008844.01.T01:intron 15.0%
!! AATTTAGGCTTATTAAAATA+AGG - Chr2:39863017-39863036 None:intergenic 15.0%
!! ATGTTATAACTTATTGTTTA+TGG + Chr2:39866321-39866340 MsG0280008844.01.T01:three_prime_UTR 15.0%
!! CACTAATATCTATATATATA+TGG + Chr2:39863314-39863333 MsG0280008844.01.T01:intron 15.0%
!! CTCTTACAAAAATAATAAAT+TGG - Chr2:39864630-39864649 None:intergenic 15.0%
!! TAAAAATCAATGTGATTATT+TGG - Chr2:39861958-39861977 None:intergenic 15.0%
!! TACAAAAGTTAGTATATTAA+CGG - Chr2:39861686-39861705 None:intergenic 15.0%
!! TGATTAAAATTGTGTATTTA+TGG + Chr2:39860750-39860769 MsG0280008844.01.T01:intron 15.0%
!! TTAAAATATGTTTGAAAAAG+TGG - Chr2:39863108-39863127 None:intergenic 15.0%
!! TTAGTTGAATTATAAGATTA+AGG + Chr2:39861627-39861646 MsG0280008844.01.T01:intron 15.0%
!!! AATATTCCAGAAAATTTTAT+TGG + Chr2:39865887-39865906 MsG0280008844.01.T01:CDS 15.0%
!!! CGAGATTTTTTTTTTTTTTT+AGG - Chr2:39860705-39860724 None:intergenic 15.0%
!!! CTAAGGATTTTTTTTTTTAA+AGG + Chr2:39863204-39863223 MsG0280008844.01.T01:intron 15.0%
!!! TCATTTTGAAACAAATTTTT+TGG + Chr2:39862639-39862658 MsG0280008844.01.T01:intron 15.0%
!!! TTATTTTGATATGTATTTGT+AGG - Chr2:39865108-39865127 None:intergenic 15.0%
!!! TTCATATTTCATTTTCTTTT+TGG + Chr2:39860440-39860459 MsG0280008844.01.T01:intron 15.0%
!!! TTTATGATCTTTTTTATTAG+AGG + Chr2:39866059-39866078 MsG0280008844.01.T01:exon 15.0%
!! AAATTATTGTTGTATTGCAA+AGG - Chr2:39863967-39863986 None:intergenic 20.0%
!! AACATTAATTGGGAAATATT+GGG + Chr2:39861260-39861279 MsG0280008844.01.T01:intron 20.0%
!! AAGCATATCACAATTTATTA+AGG + Chr2:39862878-39862897 MsG0280008844.01.T01:intron 20.0%
!! AATTATTGTTGTATTGCAAA+GGG - Chr2:39863966-39863985 None:intergenic 20.0%
!! AGAGATAAATAAAGGAAATA+TGG + Chr2:39860535-39860554 MsG0280008844.01.T01:intron 20.0%
!! ATAATCTATATCAATGACTT+TGG - Chr2:39860269-39860288 None:intergenic 20.0%
!! ATTGATAAAGTTAACACTAA+CGG - Chr2:39861178-39861197 None:intergenic 20.0%
!! ATTTCATAATTACAATGTGT+TGG + Chr2:39860466-39860485 MsG0280008844.01.T01:intron 20.0%
!! CAAATCATACATAAGAAAAT+AGG - Chr2:39865083-39865102 None:intergenic 20.0%
!! GAATTATAAGATTAAGGTTA+AGG + Chr2:39861633-39861652 MsG0280008844.01.T01:intron 20.0%
!! GTATAATAATAGGCATAAAT+TGG + Chr2:39862693-39862712 MsG0280008844.01.T01:intron 20.0%
!! TAAAATATTAATAGAGTCAG+AGG + Chr2:39865584-39865603 MsG0280008844.01.T01:intron 20.0%
!! TAACATTAATTGGGAAATAT+TGG + Chr2:39861259-39861278 MsG0280008844.01.T01:intron 20.0%
!! TAAGACAAAATTAACATTAG+AGG - Chr2:39863354-39863373 None:intergenic 20.0%
!! TAAGTTATAACATAAACAGA+AGG - Chr2:39866314-39866333 None:intergenic 20.0%
!! TGAAAATTGAATATATTCTG+CGG - Chr2:39863811-39863830 None:intergenic 20.0%
!!! CAAAAAAATCTTGATAATTG+TGG + Chr2:39863524-39863543 MsG0280008844.01.T01:intron 20.0%
!!! CAATATATAGCTTTATCTTT+TGG + Chr2:39866190-39866209 MsG0280008844.01.T01:three_prime_UTR 20.0%
!!! CTATTTTCTTATGTATGATT+TGG + Chr2:39865081-39865100 MsG0280008844.01.T01:intron 20.0%
!!! GTGTTGTTATTTAATTTAGT+AGG - Chr2:39862284-39862303 None:intergenic 20.0%
!!! TCAATGTAATTTTGGAATAT+TGG - Chr2:39865002-39865021 None:intergenic 20.0%
!!! TCAATTGACTTTTGATTATT+AGG - Chr2:39862306-39862325 None:intergenic 20.0%
!!! TGAATATGCTTTTAAGTTTT+TGG - Chr2:39864974-39864993 None:intergenic 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG - Chr2:39862527-39862546 None:intergenic 20.0%
!!! TTCTTTTACTTTGTCAAAAA+AGG - Chr2:39864831-39864850 None:intergenic 20.0%
!!! TTTAATGATGGATTTTTGTT+TGG + Chr2:39866349-39866368 MsG0280008844.01.T01:three_prime_UTR 20.0%
!!! TTTATGGTAATGTTTAATGA+TGG + Chr2:39866337-39866356 MsG0280008844.01.T01:three_prime_UTR 20.0%
!!! TTTGAAATATTAATAGAGTC+AGG - Chr2:39865355-39865374 None:intergenic 20.0%
!!! TTTTTTGACAAAGTAAAAGA+AGG + Chr2:39864830-39864849 MsG0280008844.01.T01:CDS 20.0%
! AAAATTACATTGACAGTTCA+AGG + Chr2:39865009-39865028 MsG0280008844.01.T01:intron 25.0%
! AAAATTGAATATATTCTGCG+GGG - Chr2:39863809-39863828 None:intergenic 25.0%
! AAACAGAAGAAATCAATCAT+AGG + Chr2:39861054-39861073 MsG0280008844.01.T01:intron 25.0%
! AAATTCTCTATACTAATCCA+TGG + Chr2:39865669-39865688 MsG0280008844.01.T01:intron 25.0%
! AAGATATTAACATGCAATCA+CGG + Chr2:39863928-39863947 MsG0280008844.01.T01:intron 25.0%
! ACATTAATTGGGAAATATTG+GGG + Chr2:39861261-39861280 MsG0280008844.01.T01:intron 25.0%
! AGAAAATGACATAGAAATGA+AGG - Chr2:39861845-39861864 None:intergenic 25.0%
! ATAACCAGCAATTTACAAAA+TGG + Chr2:39859954-39859973 MsG0280008844.01.T01:CDS 25.0%
! ATATAAGCTGTTTATCCAAA+CGG + Chr2:39863739-39863758 MsG0280008844.01.T01:intron 25.0%
! ATCATAGTCTTTATAGACAA+AGG + Chr2:39862077-39862096 MsG0280008844.01.T01:intron 25.0%
! ATTGTATGCTACTAAAACAA+AGG - Chr2:39862144-39862163 None:intergenic 25.0%
! CTTGATAAGCTATTTATGTT+TGG - Chr2:39863663-39863682 None:intergenic 25.0%
! GAAAATTGAATATATTCTGC+GGG - Chr2:39863810-39863829 None:intergenic 25.0%
! GAAACGTTAGAGATAAATAA+AGG + Chr2:39860527-39860546 MsG0280008844.01.T01:intron 25.0%
! GGAAAAGGATGTTAAATTAT+GGG + Chr2:39865849-39865868 MsG0280008844.01.T01:CDS 25.0%
! GTCATTGATATAGATTATGT+TGG + Chr2:39860271-39860290 MsG0280008844.01.T01:CDS 25.0%
! TAAATGTTAGTTATCTTTGG+CGG + Chr2:39863129-39863148 MsG0280008844.01.T01:intron 25.0%
! TAGTATAAAAGAGATGGAAA+AGG + Chr2:39865834-39865853 MsG0280008844.01.T01:CDS 25.0%
! TCAAAAATCAAGATACGATA+CGG + Chr2:39860949-39860968 MsG0280008844.01.T01:intron 25.0%
! TCTTGAAGAAAACTATGATT+AGG - Chr2:39864773-39864792 None:intergenic 25.0%
! TGGAAAAGGATGTTAAATTA+TGG + Chr2:39865848-39865867 MsG0280008844.01.T01:CDS 25.0%
! TTATAAATAGAACTTCACAC+TGG + Chr2:39864406-39864425 MsG0280008844.01.T01:intron 25.0%
! TTATGGTATTACAGTCATAA+TGG - Chr2:39861558-39861577 None:intergenic 25.0%
! TTCAATCCATTAATTTCTAC+AGG + Chr2:39864363-39864382 MsG0280008844.01.T01:intron 25.0%
! TTCTATTTATAATCGTGCAA+GGG - Chr2:39864398-39864417 None:intergenic 25.0%
! TTGGAATTGAATCTTATGTA+AGG - Chr2:39860250-39860269 None:intergenic 25.0%
! TTGTTGAAACATATCTGAAA+TGG + Chr2:39864717-39864736 MsG0280008844.01.T01:CDS 25.0%
!! AATCTAAATTTTCAGAGATG+GGG + Chr2:39864683-39864702 MsG0280008844.01.T01:intron 25.0%
!! CAATCTAAATTTTCAGAGAT+GGG + Chr2:39864682-39864701 MsG0280008844.01.T01:intron 25.0%
!! CTTACATAAATTGAAGTGTT+TGG - Chr2:39863621-39863640 None:intergenic 25.0%
!! TGATCTCCAATAAAATTTTC+TGG - Chr2:39865896-39865915 None:intergenic 25.0%
!! TTGAACTGTCAATGTAATTT+TGG - Chr2:39865010-39865029 None:intergenic 25.0%
!! TTTTCCATCTCTTTTATACT+AGG - Chr2:39865835-39865854 None:intergenic 25.0%
!! TTTTCCATTTTGTAAATTGC+TGG - Chr2:39859961-39859980 None:intergenic 25.0%
!!! AATAACTACATCTGTTTCTA+AGG - Chr2:39864930-39864949 None:intergenic 25.0%
!!! AGTTTGTTATTCTTTGCATT+GGG + Chr2:39864028-39864047 MsG0280008844.01.T01:CDS 25.0%
!!! ATAACTACATCTGTTTCTAA+GGG - Chr2:39864929-39864948 None:intergenic 25.0%
!!! TGTCATCCATTTTTAAGTAT+CGG + Chr2:39861448-39861467 MsG0280008844.01.T01:intron 25.0%
AACAAGACCATTATAATCAG+TGG - Chr2:39866028-39866047 None:intergenic 30.0%
AATAAGAGAGTTACAGTAGT+AGG + Chr2:39864180-39864199 MsG0280008844.01.T01:intron 30.0%
AATTTGAGAGTGACTTACAA+AGG - Chr2:39865328-39865347 None:intergenic 30.0%
ACAAGACCATTATAATCAGT+GGG - Chr2:39866027-39866046 None:intergenic 30.0%
ACAGCTTATATAGATGCTTA+TGG - Chr2:39863730-39863749 None:intergenic 30.0%
ACTTTGTCAAAAAAGGAATC+AGG - Chr2:39864824-39864843 None:intergenic 30.0%
ATAGACAAAGGAAAAAGATC+TGG + Chr2:39862089-39862108 MsG0280008844.01.T01:intron 30.0%
ATATAGATGCTTATGGCATT+AGG - Chr2:39863723-39863742 None:intergenic 30.0%
ATATGAAGTCATGGGAATTA+TGG + Chr2:39860308-39860327 MsG0280008844.01.T01:CDS 30.0%
ATCTCGAGTAAAACTGTATT+TGG - Chr2:39860599-39860618 None:intergenic 30.0%
ATGCTCAAAATGTTGAAATC+TGG - Chr2:39864437-39864456 None:intergenic 30.0%
ATTGCCTAGTATAAAAGAGA+TGG + Chr2:39865828-39865847 MsG0280008844.01.T01:CDS 30.0%
ATTTGCAAAATGCTTAGACA+TGG + Chr2:39862173-39862192 MsG0280008844.01.T01:intron 30.0%
CAAAGTTTGTAAGGACATAT+TGG - Chr2:39863835-39863854 None:intergenic 30.0%
CTAAAAGACACCTTCATAAA+AGG + Chr2:39865214-39865233 MsG0280008844.01.T01:intron 30.0%
CTTTGTCAAAAAAGGAATCA+GGG - Chr2:39864823-39864842 None:intergenic 30.0%
GAAATATCTGCATGTCAAAT+TGG + Chr2:39864791-39864810 MsG0280008844.01.T01:CDS 30.0%
GAATCTTATGTAAGGAATGA+TGG - Chr2:39860242-39860261 None:intergenic 30.0%
GACTGAATGTTTACAATAAC+AGG + Chr2:39863993-39864012 MsG0280008844.01.T01:intron 30.0%
GTATCTTACATTCTTACCAA+TGG - Chr2:39864557-39864576 None:intergenic 30.0%
GTGATTCCTGTAGAAATTAA+TGG - Chr2:39864372-39864391 None:intergenic 30.0%
GTTCTATTTATAATCGTGCA+AGG - Chr2:39864399-39864418 None:intergenic 30.0%
TAAAGTAACACACGTAACTA+AGG + Chr2:39863187-39863206 MsG0280008844.01.T01:intron 30.0%
TACCAAGAATTTCTCAACAA+AGG + Chr2:39860386-39860405 MsG0280008844.01.T01:CDS 30.0%
TACCTTTGTTGAGAAATTCT+TGG - Chr2:39860391-39860410 None:intergenic 30.0%
TATAAGCTGTTTATCCAAAC+GGG + Chr2:39863740-39863759 MsG0280008844.01.T01:intron 30.0%
TATAGATGCTTATGGCATTA+GGG - Chr2:39863722-39863741 None:intergenic 30.0%
TATCGGTGCATGATAATTAT+CGG + Chr2:39861288-39861307 MsG0280008844.01.T01:intron 30.0%
TCATCTGCCACATTAATTTA+TGG + Chr2:39861716-39861735 MsG0280008844.01.T01:intron 30.0%
TGATGAAGATATGAAGTCAT+GGG + Chr2:39860300-39860319 MsG0280008844.01.T01:CDS 30.0%
TGCTCAAAATGTTGAAATCT+GGG - Chr2:39864436-39864455 None:intergenic 30.0%
TTGTGATTTCTTTATCTCGA+TGG - Chr2:39864858-39864877 None:intergenic 30.0%
! AACGGAGAGAGTATAATAAT+AGG + Chr2:39862683-39862702 MsG0280008844.01.T01:intron 30.0%
! ACAGGTGATAATGAAACAAA+GGG + Chr2:39861476-39861495 MsG0280008844.01.T01:intron 30.0%
! ACATCAATTCGACATGTTTT+TGG + Chr2:39862248-39862267 MsG0280008844.01.T01:intron 30.0%
! ACCAATTTTCAGATTTTCCA+TGG + Chr2:39860140-39860159 MsG0280008844.01.T01:CDS 30.0%
! CCAATTTTCAGATTTTCCAT+GGG + Chr2:39860141-39860160 MsG0280008844.01.T01:CDS 30.0%
! GCAATCTAAATTTTCAGAGA+TGG + Chr2:39864681-39864700 MsG0280008844.01.T01:intron 30.0%
! GGTGGTTTATTCAAGTATTT+TGG - Chr2:39865292-39865311 None:intergenic 30.0%
! TCCGTATCATATTTTGTATC+CGG - Chr2:39860893-39860912 None:intergenic 30.0%
! TCTACAACTTGCTTATTACT+TGG - Chr2:39860190-39860209 None:intergenic 30.0%
! TTACCCAAACACCTTTTAAA+AGG - Chr2:39862952-39862971 None:intergenic 30.0%
! TTGAGAAACTTTTGACAAGA+CGG + Chr2:39865449-39865468 MsG0280008844.01.T01:intron 30.0%
!! AACACCTTTTAAAAGGCTTA+TGG - Chr2:39862945-39862964 None:intergenic 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + Chr2:39862665-39862684 MsG0280008844.01.T01:intron 30.0%
!! ACACCTTTTAAAAGGCTTAT+GGG - Chr2:39862944-39862963 None:intergenic 30.0%
!! CTATGTTTTTGTCACATTAC+AGG + Chr2:39865419-39865438 MsG0280008844.01.T01:intron 30.0%
!! GAGTTTGTTATTCTTTGCAT+TGG + Chr2:39864027-39864046 MsG0280008844.01.T01:CDS 30.0%
!!! AAAATTGGTAGCCTTGTTTT+CGG - Chr2:39860129-39860148 None:intergenic 30.0%
!!! AAGCCTTTTAAAAGGTGTTT+GGG + Chr2:39862946-39862965 MsG0280008844.01.T01:intron 30.0%
!!! GAGTACTGATGTGTTTTTTT+TGG - Chr2:39861220-39861239 None:intergenic 30.0%
!!! GTCATCCATTTTTAAGTATC+GGG + Chr2:39861449-39861468 MsG0280008844.01.T01:intron 30.0%
!!! TAAGCCTTTTAAAAGGTGTT+TGG + Chr2:39862945-39862964 MsG0280008844.01.T01:intron 30.0%
!!! TTGGATTAGTGCTTCTTTTT+TGG - Chr2:39861201-39861220 None:intergenic 30.0%
AAAAGATCTGGCCAAAGAAA+AGG + Chr2:39862101-39862120 MsG0280008844.01.T01:intron 35.0%
AAGACAGTGCAAATAGCAAT+AGG + Chr2:39862329-39862348 MsG0280008844.01.T01:intron 35.0%
AAGCTAAGTCAATCCAAAGT+GGG - Chr2:39862904-39862923 None:intergenic 35.0%
ACCTTACCTGTAAAAACTTC+TGG - Chr2:39864102-39864121 None:intergenic 35.0%
ACGAGTCGATAAACTAAGAA+GGG - Chr2:39866281-39866300 None:intergenic 35.0%
AGAAAAGGAGAAGTTAGAGA+AGG + Chr2:39862116-39862135 MsG0280008844.01.T01:intron 35.0%
AGCAATTGAACTATCTACCT+TGG + Chr2:39862220-39862239 MsG0280008844.01.T01:intron 35.0%
AGGTAAGGTTATGCATTCTA+TGG + Chr2:39864113-39864132 MsG0280008844.01.T01:intron 35.0%
ATAAGCTGTTTATCCAAACG+GGG + Chr2:39863741-39863760 MsG0280008844.01.T01:intron 35.0%
ATATGTGTAAACCACCAAAC+TGG - Chr2:39865641-39865660 None:intergenic 35.0%
ATCCTATCATTGCCAATTGT+GGG - Chr2:39865729-39865748 None:intergenic 35.0%
ATTGAACTATCTACCTTGGT+TGG + Chr2:39862224-39862243 MsG0280008844.01.T01:intron 35.0%
CAATTTATTAAGGCCCACTT+TGG + Chr2:39862888-39862907 MsG0280008844.01.T01:intron 35.0%
CCCATGGAAAATCTGAAAAT+TGG - Chr2:39860144-39860163 None:intergenic 35.0%
CCCGGATACAAAATATGATA+CGG + Chr2:39860889-39860908 MsG0280008844.01.T01:intron 35.0%
CCTTACCTGTAAAAACTTCT+GGG - Chr2:39864101-39864120 None:intergenic 35.0%
CTAATGAAATGAGATGCCAA+TGG + Chr2:39865776-39865795 MsG0280008844.01.T01:CDS 35.0%
CTAGAAAATGTGCTAACCAT+TGG - Chr2:39865795-39865814 None:intergenic 35.0%
CTGAGCTATTTGAACCATAT+AGG + Chr2:39866001-39866020 MsG0280008844.01.T01:CDS 35.0%
CTGATGAAGATATGAAGTCA+TGG + Chr2:39860299-39860318 MsG0280008844.01.T01:CDS 35.0%
CTGTGGACCATAAATTAATG+TGG - Chr2:39861726-39861745 None:intergenic 35.0%
CTTCACAGATTATCACCTAT+GGG - Chr2:39860869-39860888 None:intergenic 35.0%
CTTTGCATTGGGAAATATAG+TGG + Chr2:39864039-39864058 MsG0280008844.01.T01:CDS 35.0%
GATGTATTATTTGCCTGTAG+TGG - Chr2:39865699-39865718 None:intergenic 35.0%
GGAAAAAGAGTTGCAATTGT+TGG + Chr2:39859975-39859994 MsG0280008844.01.T01:CDS 35.0%
GTTGTATATGAAGCTGATGA+TGG + Chr2:39860056-39860075 MsG0280008844.01.T01:CDS 35.0%
TAAACTCCAAACCGAAAACA+AGG + Chr2:39860115-39860134 MsG0280008844.01.T01:CDS 35.0%
TAAGCTAAGTCAATCCAAAG+TGG - Chr2:39862905-39862924 None:intergenic 35.0%
TACAAAGGCAAGGATCAAAT+TGG - Chr2:39865313-39865332 None:intergenic 35.0%
TACCAATGGTGAAAGTAAAG+TGG - Chr2:39864543-39864562 None:intergenic 35.0%
TATCCTATCATTGCCAATTG+TGG - Chr2:39865730-39865749 None:intergenic 35.0%
TCATCAGCTTCATATACAAC+AGG - Chr2:39860056-39860075 None:intergenic 35.0%
TGAAGCCCGATACTTAAAAA+TGG - Chr2:39861457-39861476 None:intergenic 35.0%
TGCAAATATGCTCTACAGAT+TGG + Chr2:39860023-39860042 MsG0280008844.01.T01:CDS 35.0%
TTATAATCAGTGGGCCTATA+TGG - Chr2:39866018-39866037 None:intergenic 35.0%
TTATTCTTGCCACAGGATAT+AGG + Chr2:39864945-39864964 MsG0280008844.01.T01:CDS 35.0%
TTCACAGATTATCACCTATG+GGG - Chr2:39860868-39860887 None:intergenic 35.0%
! AACATTTTGAGCATTCGTCT+CGG + Chr2:39864443-39864462 MsG0280008844.01.T01:CDS 35.0%
! ACTCCCATAAGCCTTTTAAA+AGG + Chr2:39862938-39862957 MsG0280008844.01.T01:intron 35.0%
! AGATCATGCATTGTTACTTG+TGG + Chr2:39865910-39865929 MsG0280008844.01.T01:CDS 35.0%
! CACAGGTGATAATGAAACAA+AGG + Chr2:39861475-39861494 MsG0280008844.01.T01:intron 35.0%
! CCACTCATAAAATTCAGGTT+GGG - Chr2:39862780-39862799 None:intergenic 35.0%
! CCGTATCATATTTTGTATCC+GGG - Chr2:39860892-39860911 None:intergenic 35.0%
! CTAGAAGACACCTTTTATGA+AGG - Chr2:39865227-39865246 None:intergenic 35.0%
! CTCTAACTTCTCCTTTTCTT+TGG - Chr2:39862115-39862134 None:intergenic 35.0%
! GTGATAATGAAACAAAGGGA+TGG + Chr2:39861480-39861499 MsG0280008844.01.T01:intron 35.0%
! TAAATTTTCAGCTTACCCTC+CGG + Chr2:39863031-39863050 MsG0280008844.01.T01:intron 35.0%
! TATAGGCCCACTGATTATAA+TGG + Chr2:39866018-39866037 MsG0280008844.01.T01:CDS 35.0%
! TCTTTTACAGAAGAATCCCA+TGG - Chr2:39860160-39860179 None:intergenic 35.0%
! TGGATTGACTTAGCTTATGT+GGG + Chr2:39862908-39862927 MsG0280008844.01.T01:intron 35.0%
! TGGTTAGCACATTTTCTAGA+TGG + Chr2:39865796-39865815 MsG0280008844.01.T01:CDS 35.0%
! TTGGATTGACTTAGCTTATG+TGG + Chr2:39862907-39862926 MsG0280008844.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr2:39862435-39862454 None:intergenic 35.0%
!! TAGACATGGATTGATTCGTT+GGG + Chr2:39862187-39862206 MsG0280008844.01.T01:intron 35.0%
!! TTAGACATGGATTGATTCGT+TGG + Chr2:39862186-39862205 MsG0280008844.01.T01:intron 35.0%
!! TTAGTTTATCGACTCGTCTA+TGG + Chr2:39866284-39866303 MsG0280008844.01.T01:three_prime_UTR 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG + Chr2:39862436-39862455 MsG0280008844.01.T01:intron 35.0%
AAAAGACCCTTCTTTCTCCT+CGG - Chr2:39865979-39865998 None:intergenic 40.0%
AAAGGCAAGGATCAAATTGG+TGG - Chr2:39865310-39865329 None:intergenic 40.0%
AAAGTTTGCGAGGGTAAAGT+TGG + Chr2:39862577-39862596 MsG0280008844.01.T01:intron 40.0%
AAATCAAGATACGATACGGC+TGG + Chr2:39860953-39860972 MsG0280008844.01.T01:intron 40.0%
AAGTCATGGGAATTATGGAG+TGG + Chr2:39860313-39860332 MsG0280008844.01.T01:CDS 40.0%
AAGTTGCCACTGAAGAAGTA+TGG + Chr2:39864740-39864759 MsG0280008844.01.T01:CDS 40.0%
AATCAAGATACGATACGGCT+GGG + Chr2:39860954-39860973 MsG0280008844.01.T01:intron 40.0%
AATCCATGGTAAACCACTAC+AGG + Chr2:39865683-39865702 MsG0280008844.01.T01:intron 40.0%
ACCATTTGCATTTGCGCATT+CGG - Chr2:39864234-39864253 None:intergenic 40.0%
ACTAGTCCATACTTCTTCAG+TGG - Chr2:39864749-39864768 None:intergenic 40.0%
ATACTCTCCTGATACGTATC+GGG + Chr2:39861311-39861330 MsG0280008844.01.T01:intron 40.0%
ATCCCACAATTGGCAATGAT+AGG + Chr2:39865724-39865743 MsG0280008844.01.T01:CDS 40.0%
ATGTAATCCGAGGAGAAAGA+AGG + Chr2:39865969-39865988 MsG0280008844.01.T01:CDS 40.0%
CACTTCAGCAGAATACATGT+TGG + Chr2:39866102-39866121 MsG0280008844.01.T01:three_prime_UTR 40.0%
CTGGTGCAAAAGGAAAATTG+AGG + Chr2:39862381-39862400 MsG0280008844.01.T01:intron 40.0%
GACAGCCACTCATAAAATTC+AGG - Chr2:39862785-39862804 None:intergenic 40.0%
GACGAGTCGATAAACTAAGA+AGG - Chr2:39866282-39866301 None:intergenic 40.0%
GAGACATGAAATGTAATCCG+AGG + Chr2:39865959-39865978 MsG0280008844.01.T01:CDS 40.0%
GAGCATATTTGCAAGCAAGT+AGG - Chr2:39860016-39860035 None:intergenic 40.0%
GATACTCTCCTGATACGTAT+CGG + Chr2:39861310-39861329 MsG0280008844.01.T01:intron 40.0%
GATGTAGTTATTCTTGCCAC+AGG + Chr2:39864938-39864957 MsG0280008844.01.T01:CDS 40.0%
GCAATGATAGGATATGCTGA+GGG + Chr2:39865736-39865755 MsG0280008844.01.T01:CDS 40.0%
GCCACTCATAAAATTCAGGT+TGG - Chr2:39862781-39862800 None:intergenic 40.0%
GCTTCACAGATTATCACCTA+TGG - Chr2:39860870-39860889 None:intergenic 40.0%
GGAGGGTAAGCTGAAAATTT+AGG - Chr2:39863032-39863051 None:intergenic 40.0%
GTGAAAGTAAAGTGGCCAAA+AGG - Chr2:39864535-39864554 None:intergenic 40.0%
GTTCAAGGATTTCTCTCTAC+AGG + Chr2:39865024-39865043 MsG0280008844.01.T01:intron 40.0%
TAATTGGGAAATATTGGGGC+AGG + Chr2:39861265-39861284 MsG0280008844.01.T01:intron 40.0%
TCACAGATTATCACCTATGG+GGG - Chr2:39860867-39860886 None:intergenic 40.0%
TCAGCAGAATACATGTTGGA+GGG + Chr2:39866106-39866125 MsG0280008844.01.T01:three_prime_UTR 40.0%
TCATAAGCTCCTTGTTAAGC+CGG - Chr2:39863053-39863072 None:intergenic 40.0%
TGATGTACTCAGATAGATGC+AGG - Chr2:39859925-39859944 None:intergenic 40.0%
TGGGAATTATGGAGTGGTAA+TGG + Chr2:39860319-39860338 MsG0280008844.01.T01:CDS 40.0%
TGTAATATGCCATGTTCCCT+TGG - Chr2:39860358-39860377 None:intergenic 40.0%
TGTAATCCGAGGAGAAAGAA+GGG + Chr2:39865970-39865989 MsG0280008844.01.T01:CDS 40.0%
TGTGAGAGAAAAGTTTGCGA+GGG + Chr2:39862568-39862587 MsG0280008844.01.T01:intron 40.0%
TTCAGCAGAATACATGTTGG+AGG + Chr2:39866105-39866124 MsG0280008844.01.T01:three_prime_UTR 40.0%
TTGAACCAATGACCATTGAC+CGG - Chr2:39859873-39859892 None:intergenic 40.0%
TTGGAAATTCCAAGATGTGC+AGG + Chr2:39862712-39862731 MsG0280008844.01.T01:intron 40.0%
TTGTGAGAGAAAAGTTTGCG+AGG + Chr2:39862567-39862586 MsG0280008844.01.T01:intron 40.0%
! AAAGGCCCAGAAGTTTTTAC+AGG + Chr2:39864093-39864112 MsG0280008844.01.T01:CDS 40.0%
! AGCTTTAGCTTCTGCAAAGA+AGG + Chr2:39864878-39864897 MsG0280008844.01.T01:CDS 40.0%
! CCCAACCTGAATTTTATGAG+TGG + Chr2:39862777-39862796 MsG0280008844.01.T01:intron 40.0%
! CCCAGAAGTTTTTACAGGTA+AGG + Chr2:39864098-39864117 MsG0280008844.01.T01:intron 40.0%
! GCATTGTTACTTGTGGCATA+TGG + Chr2:39865917-39865936 MsG0280008844.01.T01:CDS 40.0%
! TGATACGTATCGGGAAGTAT+CGG + Chr2:39861320-39861339 MsG0280008844.01.T01:intron 40.0%
! TTCTATGGATTACTCTGCCT+TGG + Chr2:39864128-39864147 MsG0280008844.01.T01:intron 40.0%
! TTTTGGTCACCTATATCCTG+TGG - Chr2:39864957-39864976 None:intergenic 40.0%
!! AGACATGGATTGATTCGTTG+GGG + Chr2:39862188-39862207 MsG0280008844.01.T01:intron 40.0%
!! TATGAAGCTGATGATGGTGT+TGG + Chr2:39860062-39860081 MsG0280008844.01.T01:CDS 40.0%
!!! AGCACTGATCGTTCTCTTTT+CGG - Chr2:39861146-39861165 None:intergenic 40.0%
!!! AGTGGTAATGGCAGTAGTTT+TGG + Chr2:39860331-39860350 MsG0280008844.01.T01:CDS 40.0%
!!! GAACTTTTAGTTCACAAGCC+CGG + Chr2:39864491-39864510 MsG0280008844.01.T01:CDS 40.0%
!!! TTTTAAGTATCGGGCTTCAC+AGG + Chr2:39861458-39861477 MsG0280008844.01.T01:intron 40.0%
AACCAACTTGACACTCGTAC+AGG + Chr2:39862827-39862846 MsG0280008844.01.T01:intron 45.0%
AACCTGTACGAGTGTCAAGT+TGG - Chr2:39862832-39862851 None:intergenic 45.0%
ACACACCGAAAGGGAAAACT+CGG - Chr2:39860844-39860863 None:intergenic 45.0%
ACGCAATAGCATTCTGAGTC+AGG + Chr2:39861778-39861797 MsG0280008844.01.T01:intron 45.0%
AGAGTTACAGTAGTAGGCTC+AGG + Chr2:39864186-39864205 MsG0280008844.01.T01:intron 45.0%
AGAGTTGCAATTGTTGGTGC+AGG + Chr2:39859981-39860000 MsG0280008844.01.T01:CDS 45.0%
AGCAGCAGTTTCTTTGTCCA+AGG - Chr2:39864148-39864167 None:intergenic 45.0%
AGGTGATAATCTGTGAAGCC+CGG + Chr2:39860871-39860890 MsG0280008844.01.T01:intron 45.0%
ATGTCCGTATCATAGTCTGC+TGG + Chr2:39862362-39862381 MsG0280008844.01.T01:intron 45.0%
ATTGTTGGTGCAGGAATCAG+TGG + Chr2:39859990-39860009 MsG0280008844.01.T01:CDS 45.0%
CACACCATGTTGAACATCTG+TGG - Chr2:39861743-39861762 None:intergenic 45.0%
CACAGATGTTCAACATGGTG+TGG + Chr2:39861741-39861760 MsG0280008844.01.T01:intron 45.0%
CAGCAGAATACATGTTGGAG+GGG + Chr2:39866107-39866126 MsG0280008844.01.T01:three_prime_UTR 45.0%
GAGAGTGACTTACAAAGGCA+AGG - Chr2:39865323-39865342 None:intergenic 45.0%
GATACTTCCCGATACGTATC+AGG - Chr2:39861321-39861340 None:intergenic 45.0%
GATCTAGAGAGAATCGAAGG+AGG - Chr2:39863086-39863105 None:intergenic 45.0%
GGAAATATTGGGGCAGGTAT+CGG + Chr2:39861271-39861290 MsG0280008844.01.T01:intron 45.0%
GGCAATGATAGGATATGCTG+AGG + Chr2:39865735-39865754 MsG0280008844.01.T01:CDS 45.0%
GGGAACATGGCATATTACAG+TGG + Chr2:39860359-39860378 MsG0280008844.01.T01:CDS 45.0%
GTGGATCTAGAGAGAATCGA+AGG - Chr2:39863089-39863108 None:intergenic 45.0%
TACAAAGACCGAGACCAGTT+TGG + Chr2:39865624-39865643 MsG0280008844.01.T01:intron 45.0%
TCATAGTCTGCTGGTGCAAA+AGG + Chr2:39862371-39862390 MsG0280008844.01.T01:intron 45.0%
TCGAATTGATGTGCCAACCA+AGG - Chr2:39862240-39862259 None:intergenic 45.0%
TGCACCAGCAGACTATGATA+CGG - Chr2:39862369-39862388 None:intergenic 45.0%
TGGTCCACAGATGTTCAACA+TGG + Chr2:39861736-39861755 MsG0280008844.01.T01:intron 45.0%
TTACACTCTTAGACCCCGTT+TGG - Chr2:39863757-39863776 None:intergenic 45.0%
TTGCCTGTAGTGGTTTACCA+TGG - Chr2:39865689-39865708 None:intergenic 45.0%
! AAAACTTCTGGGCCTTTTCC+AGG - Chr2:39864090-39864109 None:intergenic 45.0%
! AAACTTCTGGGCCTTTTCCA+GGG - Chr2:39864089-39864108 None:intergenic 45.0%
! ACTGCATCGATACGTCGATA+CGG + Chr2:39860919-39860938 MsG0280008844.01.T01:intron 45.0%
! AGCAACCGAGTTTTCCCTTT+CGG + Chr2:39860836-39860855 MsG0280008844.01.T01:intron 45.0%
! ATACATGTTGGAGGGGTACA+TGG + Chr2:39866114-39866133 MsG0280008844.01.T01:three_prime_UTR 45.0%
! ATGATGGTGTTGGAGGACTA+TGG + Chr2:39860072-39860091 MsG0280008844.01.T01:CDS 45.0%
! GGCCACTTTACTTTCACCAT+TGG + Chr2:39864538-39864557 MsG0280008844.01.T01:CDS 45.0%
! GTAAACCACCAAACTGGTCT+CGG - Chr2:39865635-39865654 None:intergenic 45.0%
! TAGAGAAAGCACAACACTCG+TGG + Chr2:39866144-39866163 MsG0280008844.01.T01:three_prime_UTR 45.0%
!! ACACTTCCTTCTTGGCCTTT+TGG + Chr2:39864517-39864536 MsG0280008844.01.T01:CDS 45.0%
!! ACATGGATTGATTCGTTGGG+GGG + Chr2:39862190-39862209 MsG0280008844.01.T01:intron 45.0%
!! GACATGGATTGATTCGTTGG+GGG + Chr2:39862189-39862208 MsG0280008844.01.T01:intron 45.0%
!! GATACGTATCGGGAAGTATC+GGG + Chr2:39861321-39861340 MsG0280008844.01.T01:intron 45.0%
!! GCACTGATCGTTCTCTTTTC+GGG - Chr2:39861145-39861164 None:intergenic 45.0%
!!! AGTTTTGGACCAAGGGAACA+TGG + Chr2:39860346-39860365 MsG0280008844.01.T01:CDS 45.0%
!!! ATGGCAGTAGTTTTGGACCA+AGG + Chr2:39860338-39860357 MsG0280008844.01.T01:CDS 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr2:39862432-39862451 None:intergenic 45.0%
!!! TGGCAGTAGTTTTGGACCAA+GGG + Chr2:39860339-39860358 MsG0280008844.01.T01:CDS 45.0%
!!! TGGTAGCCTTGTTTTCGGTT+TGG - Chr2:39860124-39860143 None:intergenic 45.0%
!! TAAAAATAAAATTTAATCTT+CGG + Chr2:39861357-39861376 MsG0280008844.01.T01:intron 5.0%
!!! TAAAGTAAAAATTTAATTTA+TGG - Chr2:39861575-39861594 None:intergenic 5.0%
AAAGACCGAGACCAGTTTGG+TGG + Chr2:39865627-39865646 MsG0280008844.01.T01:intron 50.0%
AACATTCCTGAGTTCCTCCC+TGG + Chr2:39864069-39864088 MsG0280008844.01.T01:CDS 50.0%
AAGCTCCTTGTTAAGCCGGA+GGG - Chr2:39863049-39863068 None:intergenic 50.0%
AAGTGGCCAAAAGGCCAAGA+AGG - Chr2:39864526-39864545 None:intergenic 50.0%
ACATCCTCGCATCCCACAAT+TGG + Chr2:39865714-39865733 MsG0280008844.01.T01:CDS 50.0%
ATTGCCAATTGTGGGATGCG+AGG - Chr2:39865721-39865740 None:intergenic 50.0%
GCCGAATGCGCAAATGCAAA+TGG + Chr2:39864230-39864249 MsG0280008844.01.T01:intron 50.0%
GGGAGGAACTCAGGAATGTT+TGG - Chr2:39864069-39864088 None:intergenic 50.0%
TAAGCTCCTTGTTAAGCCGG+AGG - Chr2:39863050-39863069 None:intergenic 50.0%
TATCGGTGAAGGATACGCAG+GGG + Chr2:39861417-39861436 MsG0280008844.01.T01:intron 50.0%
! ATGGTGTTGGAGGACTATGG+AGG + Chr2:39860075-39860094 MsG0280008844.01.T01:CDS 50.0%
! GTATCGGTGAAGGATACGCA+GGG + Chr2:39861416-39861435 MsG0280008844.01.T01:intron 50.0%
!! CCAAGAAGGAAGTGTTCTCC+GGG - Chr2:39864512-39864531 None:intergenic 50.0%
!! GAAGCTGATGATGGTGTTGG+AGG + Chr2:39860065-39860084 MsG0280008844.01.T01:CDS 50.0%
!! GCCAAGAAGGAAGTGTTCTC+CGG - Chr2:39864513-39864532 None:intergenic 50.0%
ACCAATGACCATTGACCGGC+AGG - Chr2:39859869-39859888 None:intergenic 55.0%
CAATGACCATTGACCGGCAG+GGG - Chr2:39859867-39859886 None:intergenic 55.0%
CCAATGACCATTGACCGGCA+GGG - Chr2:39859868-39859887 None:intergenic 55.0%
CCCGGAGAACACTTCCTTCT+TGG + Chr2:39864509-39864528 MsG0280008844.01.T01:CDS 55.0%
CCTGAGTTCCTCCCTGGAAA+AGG + Chr2:39864075-39864094 MsG0280008844.01.T01:CDS 55.0%
CTATGGGGGACACACCGAAA+GGG - Chr2:39860853-39860872 None:intergenic 55.0%
GCTTACCCTCCGGCTTAACA+AGG + Chr2:39863041-39863060 MsG0280008844.01.T01:intron 55.0%
! CCTTTTCCAGGGAGGAACTC+AGG - Chr2:39864078-39864097 None:intergenic 55.0%
!! GGATTGATTCGTTGGGGGGT+TGG + Chr2:39862194-39862213 MsG0280008844.01.T01:intron 55.0%
!! GGGAAGTATCGGGCAGGTAT+CGG + Chr2:39861400-39861419 MsG0280008844.01.T01:intron 55.0%
!! GGTATCGGTGAAGGATACGC+AGG + Chr2:39861415-39861434 MsG0280008844.01.T01:intron 55.0%
!! TATCGGGCAGGTATCGGTGA+AGG + Chr2:39861406-39861425 MsG0280008844.01.T01:intron 55.0%
CCCTGCCGGTCAATGGTCAT+TGG + Chr2:39859865-39859884 MsG0280008844.01.T01:CDS 60.0%
CCTATGGGGGACACACCGAA+AGG - Chr2:39860854-39860873 None:intergenic 60.0%
GGGTGTGCACCTGCACATCT+TGG - Chr2:39862724-39862743 None:intergenic 60.0%
TGCACACCCTCAATCCCAGC+TGG + Chr2:39862735-39862754 MsG0280008844.01.T01:intron 60.0%
! CCTTTCGGTGTGTCCCCCAT+AGG + Chr2:39860851-39860870 MsG0280008844.01.T01:intron 60.0%
! CTTCTGGGCCTTTTCCAGGG+AGG - Chr2:39864086-39864105 None:intergenic 60.0%
!! CGTATCGGGAAGTATCGGGC+AGG + Chr2:39861394-39861413 MsG0280008844.01.T01:intron 60.0%
!! TTCAGGTTGGGCGCAAAGCC+AGG - Chr2:39862768-39862787 None:intergenic 60.0%
AGCGGAGCCAGCTGGGATTG+AGG - Chr2:39862745-39862764 None:intergenic 65.0%
GCGGAGCCAGCTGGGATTGA+GGG - Chr2:39862744-39862763 None:intergenic 65.0%
GTTGGGCGCAAAGCCAGGAG+CGG - Chr2:39862763-39862782 None:intergenic 65.0%
TGACCATTGACCGGCAGGGG+CGG - Chr2:39859864-39859883 None:intergenic 65.0%
AAGCCAGGAGCGGAGCCAGC+TGG - Chr2:39862753-39862772 None:intergenic 70.0%
AGCCAGGAGCGGAGCCAGCT+GGG - Chr2:39862752-39862771 None:intergenic 70.0%
! ATCCCAGCTGGCTCCGCTCC+TGG + Chr2:39862747-39862766 MsG0280008844.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 39859861 39866376 39859861 ID=MsG0280008844.01;Name=MsG0280008844.01
Chr2 mRNA 39859861 39866376 39859861 ID=MsG0280008844.01.T01;Parent=MsG0280008844.01;Name=MsG0280008844.01.T01;_AED=0.49;_eAED=0.52;_QI=0|0.2|0.16|1|0.8|0.66|6|311|445
Chr2 exon 39859861 39860171 39859861 ID=MsG0280008844.01.T01:exon:20912;Parent=MsG0280008844.01.T01
Chr2 exon 39860258 39860432 39860258 ID=MsG0280008844.01.T01:exon:20913;Parent=MsG0280008844.01.T01
Chr2 exon 39864015 39864114 39864015 ID=MsG0280008844.01.T01:exon:20914;Parent=MsG0280008844.01.T01
Chr2 exon 39864438 39864559 39864438 ID=MsG0280008844.01.T01:exon:20915;Parent=MsG0280008844.01.T01
Chr2 exon 39864698 39864966 39864698 ID=MsG0280008844.01.T01:exon:20916;Parent=MsG0280008844.01.T01
Chr2 exon 39865705 39866376 39865705 ID=MsG0280008844.01.T01:exon:20917;Parent=MsG0280008844.01.T01
Chr2 CDS 39859861 39860171 39859861 ID=MsG0280008844.01.T01:cds;Parent=MsG0280008844.01.T01
Chr2 CDS 39860258 39860432 39860258 ID=MsG0280008844.01.T01:cds;Parent=MsG0280008844.01.T01
Chr2 CDS 39864015 39864114 39864015 ID=MsG0280008844.01.T01:cds;Parent=MsG0280008844.01.T01
Chr2 CDS 39864438 39864559 39864438 ID=MsG0280008844.01.T01:cds;Parent=MsG0280008844.01.T01
Chr2 CDS 39864698 39864966 39864698 ID=MsG0280008844.01.T01:cds;Parent=MsG0280008844.01.T01
Chr2 CDS 39865705 39866065 39865705 ID=MsG0280008844.01.T01:cds;Parent=MsG0280008844.01.T01
Chr2 three_prime_UTR 39866066 39866376 39866066 ID=MsG0280008844.01.T01:three_prime_utr;Parent=MsG0280008844.01.T01
Gene Sequence

>MsG0280008844.01.T01

CCGCCCCTGCCGGTCAATGGTCATTGGTTCAATGCATTTACTTTATTTCAAAACATAATTGCCTGCATCTATCTGAGTACATCAGAGCAAAGAATAACCAGCAATTTACAAAATGGAAAAAGAGTTGCAATTGTTGGTGCAGGAATCAGTGGCCTACTTGCTTGCAAATATGCTCTACAGATTGGTTTTAATCCTGTTGTATATGAAGCTGATGATGGTGTTGGAGGACTATGGAGGCATACTATTGAATCTACTAAACTCCAAACCGAAAACAAGGCTACCAATTTTCAGATTTTCCATGGGATTCTTCTATTCAATTCCAAAGTCATTGATATAGATTATGTTGGAGAGTCTGATGAAGATATGAAGTCATGGGAATTATGGAGTGGTAATGGCAGTAGTTTTGGACCAAGGGAACATGGCATATTACAGTGGAAGATACCAAGAATTTCTCAACAAAGGTATGTTTTTATAGATTGTAATTTTGTACATAAAGCAGAGTTTGTTATTCTTTGCATTGGGAAATATAGTGGTTTTCCAAACATTCCTGAGTTCCTCCCTGGAAAAGGCCCAGAAGTTTTTACAGATTTCAACATTTTGAGCATTCGTCTCGGATACTTGTATTTCAATCGTTTCGCAGAACTTTTAGTTCACAAGCCCGGAGAACACTTCCTTCTTGGCCTTTTGGCCACTTTACTTTCACCATTGAGATGGGGAATTTCTAAACTTGTTGAAACATATCTGAAATGGAAGTTGCCACTGAAGAAGTATGGACTAGTACCTAATCATAGTTTTCTTCAAGAAATATCTGCATGTCAAATTGGAATTCTCCCTGATTCCTTTTTTGACAAAGTAAAAGAAGGATCCATCGAGATAAAGAAATCACAAAGCTTTAGCTTCTGCAAAGAAGGTTTGATCATCAATGAAGAAGCTAAGCCCTTAGAAACAGATGTAGTTATTCTTGCCACAGGATATAGGCAAATAATACATCCTCGCATCCCACAATTGGCAATGATAGGATATGCTGAGGGAATATCAAATATTGTTTCTAATGAAATGAGATGCCAATGGTTAGCACATTTTCTAGATGGAAACATTGAATTGCCTAGTATAAAAGAGATGGAAAAGGATGTTAAATTATGGGAAGACAACATGAAGCAATATTCCAGAAAATTTTATTGGAGATCATGCATTGTTACTTGTGGCATATGGTATAATGATCAATTGTGCAGAGACATGAAATGTAATCCGAGGAGAAAGAAGGGTCTTTTTGCTGAGCTATTTGAACCATATAGGCCCACTGATTATAATGGTCTTGTTCATAATGAACTTTTATGA
Protein sequence

>MsG0280008844.01.T01

PPLPVNGHWFNAFTLFQNIIACIYLSTSEQRITSNLQNGKRVAIVGAGISGLLACKYALQIGFNPVVYEADDGVGGLWRHTIESTKLQTENKATNFQIFHGILLFNSKVIDIDYVGESDEDMKSWELWSGNGSSFGPREHGILQWKIPRISQQRYVFIDCNFVHKAEFVILCIGKYSGFPNIPEFLPGKGPEVFTDFNILSIRLGYLYFNRFAELLVHKPGEHFLLGLLATLLSPLRWGISKLVETYLKWKLPLKKYGLVPNHSFLQEISACQIGILPDSFFDKVKEGSIEIKKSQSFSFCKEGLIINEEAKPLETDVVILATGYRQIIHPRIPQLAMIGYAEGISNIVSNEMRCQWLAHFLDGNIELPSIKEMEKDVKLWEDNMKQYSRKFYWRSCIVTCGIWYNDQLCRDMKCNPRRKKGLFAELFEPYRPTDYNGLVHNELL*