AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020041.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020041.01.T01 MTR_2g450310 85.588 340 39 2 6 341 146 479 0.0 568
MsG0480020041.01.T01 MTR_2g450510 72.895 380 90 5 6 379 146 518 0.0 553
MsG0480020041.01.T01 MTR_4g124800 42.234 367 202 8 11 373 161 521 2.10e-86 271
MsG0480020041.01.T01 MTR_2g020630 39.178 365 203 6 11 373 158 505 1.66e-82 261
MsG0480020041.01.T01 MTR_1308s0010 74.691 162 40 1 87 248 1 161 2.85e-82 249
MsG0480020041.01.T01 MTR_2g044140 41.803 366 206 5 11 373 158 519 1.13e-81 259
MsG0480020041.01.T01 MTR_2g043850 42.350 366 204 5 11 373 158 519 2.92e-80 255
MsG0480020041.01.T01 MTR_6g037690 57.143 112 47 1 262 373 202 312 1.49e-41 149
MsG0480020041.01.T01 MTR_1372s0010 81.013 79 15 0 7 85 1 79 1.21e-40 138
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020041.01.T01 AT1G19250 41.555 373 211 5 4 373 150 518 1.93e-92 287
MsG0480020041.01.T01 AT5G45180 36.517 356 177 7 4 354 148 459 2.79e-67 220

Find 73 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCCCAGATTTCAACATTC+TGG 0.210934 4:+32716998 MsG0480020041.01.T01:CDS
AATAACTACATCTGTTTCTA+AGG 0.224263 4:-32717532 None:intergenic
CCCGGAGAACACTTCCTTCT+TGG 0.233331 4:+32717077 MsG0480020041.01.T01:CDS
TGGAGAAGGATGTTAAATTA+TGG 0.235292 4:+32718518 MsG0480020041.01.T01:CDS
ACACTTCCTTCTTGGCCTTT+TGG 0.237410 4:+32717085 MsG0480020041.01.T01:CDS
AGGTAAGTTTATGCATTCTA+TGG 0.279876 4:+32716674 MsG0480020041.01.T01:CDS
GAAATATCTGCATGTCAAAT+TGG 0.294249 4:+32717396 MsG0480020041.01.T01:CDS
CTCCCAGATTTCAACATTCT+GGG 0.325483 4:+32716999 MsG0480020041.01.T01:CDS
GCGGAGCTATTTGAACCATA+TGG 0.339270 4:+32718670 MsG0480020041.01.T01:CDS
ATGCCCAGAATGTTGAAATC+TGG 0.349568 4:-32717002 None:intergenic
ACCATTTGCATTTGCGCATT+CGG 0.352274 4:-32716793 None:intergenic
TCTTGAAGAAAACTATGATT+AGG 0.356221 4:-32717375 None:intergenic
CTTTGCATTGGGAAATATAG+TGG 0.362241 4:+32716600 MsG0480020041.01.T01:CDS
ATTCTTGCCACAGGATATAA+AGG 0.366577 4:+32717552 MsG0480020041.01.T01:CDS
AATAAGAGAGTTACAGTAGT+AGG 0.371604 4:+32716741 MsG0480020041.01.T01:CDS
GGGAGGAACTCAGGAATGTT+TGG 0.394469 4:-32716627 None:intergenic
GGAGAAGGATGTTAAATTAT+GGG 0.394999 4:+32718519 MsG0480020041.01.T01:CDS
GCCAAGAAGGAAGTGTTCTC+CGG 0.407386 4:-32717078 None:intergenic
AAGTTGCCACTGAAGAAGTA+TGG 0.417922 4:+32717345 MsG0480020041.01.T01:CDS
CGGAGCTATTTGAACCATAT+GGG 0.422701 4:+32718671 MsG0480020041.01.T01:CDS
TTGTTGAAACATATCTGAAA+TGG 0.425780 4:+32717322 MsG0480020041.01.T01:CDS
AGCTTTAGCTTCTGCAAAGA+AGG 0.430511 4:+32717483 MsG0480020041.01.T01:CDS
TTATAATCAGTGGGCCCATA+TGG 0.433595 4:-32718685 None:intergenic
GCATTGTTACTTGTGGCATA+TGG 0.438868 4:+32718587 MsG0480020041.01.T01:CDS
AGTTTGTTATTCTTTGCATT+GGG 0.451815 4:+32716589 MsG0480020041.01.T01:CDS
AAATATGTAAACCACCAAAC+TGG 0.452751 4:-32718293 None:intergenic
ATCCTATCATTGCCAATTGT+GGG 0.453863 4:-32718396 None:intergenic
GGCCACTTTACTTTCACCAT+TGG 0.455226 4:+32717106 MsG0480020041.01.T01:CDS
ACATCCTCGCATCCCACAAT+TGG 0.456442 4:+32718384 MsG0480020041.01.T01:CDS
GAGTTTGTTATTCTTTGCAT+TGG 0.462117 4:+32716588 MsG0480020041.01.T01:CDS
TTCTATGGATTACTCTGCCT+TGG 0.462649 4:+32716689 MsG0480020041.01.T01:CDS
TTGTGATTTCTTTATCTCGA+TGG 0.463038 4:-32717460 None:intergenic
AACATTCCTGAGTTCCTCCC+TGG 0.466304 4:+32716630 MsG0480020041.01.T01:CDS
CCTGAGTTCCTCCCTGGAAA+AGG 0.469202 4:+32716636 MsG0480020041.01.T01:CDS
TGCCCAGAATGTTGAAATCT+GGG 0.478870 4:-32717001 None:intergenic
TATGGGCCCACTGATTATAA+TGG 0.482729 4:+32718688 MsG0480020041.01.T01:CDS
TTGGTCACCTTTATATCCTG+TGG 0.488352 4:-32717559 None:intergenic
TATCCTATCATTGCCAATTG+TGG 0.493186 4:-32718397 None:intergenic
TGCAAAGACAGAGACCAGTT+TGG 0.495231 4:+32718279 MsG0480020041.01.T01:intron
AACAAGACCATTATAATCAG+TGG 0.502752 4:-32718695 None:intergenic
TCCGAATGCGCAAATGCAAA+TGG 0.502988 4:+32716792 MsG0480020041.01.T01:CDS
ATCCCACAATTGGCAATGAT+AGG 0.504586 4:+32718394 MsG0480020041.01.T01:CDS
AGAGTTACAGTAGTAGGCTC+AGG 0.504894 4:+32716747 MsG0480020041.01.T01:CDS
AAAAGACCCTTCTTTCTCCT+CGG 0.506769 4:-32718646 None:intergenic
AACATTCTGGGCATTCGTCT+CGG 0.507223 4:+32717011 MsG0480020041.01.T01:CDS
CTAGAAAATGTGCTAACCAT+TGG 0.509768 4:-32718462 None:intergenic
GTGAAAGTAAAGTGGCCAAA+AGG 0.517743 4:-32717100 None:intergenic
GGATGTAGTATTTCTTGTAG+TGG 0.522833 4:-32718367 None:intergenic
AAGTGGCCAAAAGGCCAAGA+AGG 0.525815 4:-32717091 None:intergenic
GATGTAGTTATTCTTGCCAC+AGG 0.531258 4:+32717543 MsG0480020041.01.T01:CDS
TCGGATTACACTTCATGTCT+CGG 0.532826 4:-32718627 None:intergenic
GTTCTATTTATAATCGTGCA+AGG 0.542558 4:-32716963 None:intergenic
CCAAGAAGGAAGTGTTCTCC+GGG 0.546254 4:-32717077 None:intergenic
ATAACTACATCTGTTTCTAA+GGG 0.546830 4:-32717531 None:intergenic
AGCAGCAGTTTCTTTGTCCA+AGG 0.547408 4:-32716706 None:intergenic
GTGTAATCCGAGGAGAAAGA+AGG 0.551929 4:+32718639 MsG0480020041.01.T01:CDS
AAAGACAGAGACCAGTTTGG+TGG 0.559252 4:+32718282 MsG0480020041.01.T01:intron
ATTGCCTAGTATAAAAGAGA+TGG 0.565732 4:+32718498 MsG0480020041.01.T01:CDS
AAATTCTCTATACTAATCCA+TGG 0.570943 4:+32718340 MsG0480020041.01.T01:CDS
TACCAATGGTGAAAGTAAAG+TGG 0.578127 4:-32717108 None:intergenic
TTTCTTGTAGTGGTTTACCA+TGG 0.589788 4:-32718357 None:intergenic
GGCAATGATAGGATATGCTG+AGG 0.603017 4:+32718405 MsG0480020041.01.T01:CDS
AGATCATGCATTGTTACTTG+TGG 0.603581 4:+32718580 MsG0480020041.01.T01:CDS
TTCTATTTATAATCGTGCAA+GGG 0.618260 4:-32716962 None:intergenic
ACAAGACCATTATAATCAGT+GGG 0.632491 4:-32718694 None:intergenic
TAGTATAAAAGAGATGGAGA+AGG 0.639486 4:+32718504 MsG0480020041.01.T01:CDS
TGTAATCCGAGGAGAAAGAA+GGG 0.645189 4:+32718640 MsG0480020041.01.T01:CDS
ACTAGTCCATACTTCTTCAG+TGG 0.645916 4:-32717351 None:intergenic
CTAATGAAATGAGATGCCAA+TGG 0.660576 4:+32718446 MsG0480020041.01.T01:CDS
GAGACATGAAGTGTAATCCG+AGG 0.661308 4:+32718629 MsG0480020041.01.T01:CDS
TTATAAATAGAACTTCACAC+TGG 0.667245 4:+32716973 MsG0480020041.01.T01:CDS
ATTGCCAATTGTGGGATGCG+AGG 0.681590 4:-32718388 None:intergenic
GCAATGATAGGATATGCTGA+GGG 0.702690 4:+32718406 MsG0480020041.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTT+GGG + Chr4:32717774-32717793 MsG0480020041.01.T01:intron 0.0%
!! TATATATATATATATATATT+TGG + Chr4:32717773-32717792 MsG0480020041.01.T01:intron 0.0%
!! AATCTTTCAAATATATATAT+AGG - Chr4:32717921-32717940 None:intergenic 10.0%
!! ATATATATTTGAAAGATTAA+CGG + Chr4:32717923-32717942 MsG0480020041.01.T01:intron 10.0%
!! ATCTTTCAAATATATATATA+GGG - Chr4:32717920-32717939 None:intergenic 10.0%
!! TCTTACAAAAATATATAAAT+TGG - Chr4:32717234-32717253 None:intergenic 10.0%
!!! AATATTCCAGAAAATTTTAT+TGG + Chr4:32718557-32718576 MsG0480020041.01.T01:CDS 15.0%
!!! TATTTTTGATATGTATTTGT+AGG - Chr4:32717714-32717733 None:intergenic 15.0%
!! AAATTATTGTTGTATTGCAA+AGG - Chr4:32716528-32716547 None:intergenic 20.0%
!! AATTATTGTTGTATTGCAAA+GGG - Chr4:32716527-32716546 None:intergenic 20.0%
!! CAAATCATACATAAGAAAAT+AGG - Chr4:32717689-32717708 None:intergenic 20.0%
!!! CTATTTTCTTATGTATGATT+TGG + Chr4:32717687-32717706 MsG0480020041.01.T01:intron 20.0%
!!! TCAATGTAATTTTGGAATAT+TGG - Chr4:32717609-32717628 None:intergenic 20.0%
!!! TGAATATGCTTTTAAGTTTT+TGG - Chr4:32717581-32717600 None:intergenic 20.0%
! AAAATTACATTGACAGTTCA+AGG + Chr4:32717616-32717635 MsG0480020041.01.T01:intron 25.0%
! AAATTCTCTATACTAATCCA+TGG + Chr4:32718340-32718359 MsG0480020041.01.T01:CDS 25.0%
! AAGATATTAACATGCAATCA+CGG + Chr4:32716489-32716508 MsG0480020041.01.T01:intron 25.0%
! TCTTGAAGAAAACTATGATT+AGG - Chr4:32717378-32717397 None:intergenic 25.0%
! TTATAAATAGAACTTCACAC+TGG + Chr4:32716973-32716992 MsG0480020041.01.T01:CDS 25.0%
! TTCAATCCATTAATTTCTAC+AGG + Chr4:32716930-32716949 MsG0480020041.01.T01:intron 25.0%
! TTCTATTTATAATCGTGCAA+GGG - Chr4:32716965-32716984 None:intergenic 25.0%
! TTGTTGAAACATATCTGAAA+TGG + Chr4:32717322-32717341 MsG0480020041.01.T01:CDS 25.0%
!! AATCTAAATTTTCAGAGATG+GGG + Chr4:32717288-32717307 MsG0480020041.01.T01:intron 25.0%
!! CAATCTAAATTTTCAGAGAT+GGG + Chr4:32717287-32717306 MsG0480020041.01.T01:intron 25.0%
!! TGATCTCCAATAAAATTTTC+TGG - Chr4:32718566-32718585 None:intergenic 25.0%
!! TTCTTTTACTTGGTCAAAAA+AGG - Chr4:32717436-32717455 None:intergenic 25.0%
!! TTGAACTGTCAATGTAATTT+TGG - Chr4:32717617-32717636 None:intergenic 25.0%
!!! AATAACTACATCTGTTTCTA+AGG - Chr4:32717535-32717554 None:intergenic 25.0%
!!! AGTTTGTTATTCTTTGCATT+GGG + Chr4:32716589-32716608 MsG0480020041.01.T01:CDS 25.0%
!!! ATAACTACATCTGTTTCTAA+GGG - Chr4:32717534-32717553 None:intergenic 25.0%
!!! TTTTTTGACCAAGTAAAAGA+AGG + Chr4:32717435-32717454 MsG0480020041.01.T01:CDS 25.0%
AAATATGTAAACCACCAAAC+TGG - Chr4:32718296-32718315 None:intergenic 30.0%
AACAAGACCATTATAATCAG+TGG - Chr4:32718698-32718717 None:intergenic 30.0%
AACTTACCTGTAAAAACTTC+TGG - Chr4:32716663-32716682 None:intergenic 30.0%
AATAAGAGAGTTACAGTAGT+AGG + Chr4:32716741-32716760 MsG0480020041.01.T01:CDS 30.0%
AATTTGAGAGTGACTTACAA+AGG - Chr4:32717985-32718004 None:intergenic 30.0%
ACAAGACCATTATAATCAGT+GGG - Chr4:32718697-32718716 None:intergenic 30.0%
ACTTACCTGTAAAAACTTCT+GGG - Chr4:32716662-32716681 None:intergenic 30.0%
AGGTAAGTTTATGCATTCTA+TGG + Chr4:32716674-32716693 MsG0480020041.01.T01:CDS 30.0%
ATTGCCTAGTATAAAAGAGA+TGG + Chr4:32718498-32718517 MsG0480020041.01.T01:CDS 30.0%
CTAAAAGACACCTTCATAAA+AGG + Chr4:32717879-32717898 MsG0480020041.01.T01:intron 30.0%
GAAATATCTGCATGTCAAAT+TGG + Chr4:32717396-32717415 MsG0480020041.01.T01:CDS 30.0%
GACTGAATGTTTACAATAAC+AGG + Chr4:32716554-32716573 MsG0480020041.01.T01:intron 30.0%
GCAAAGTTACAACTAAAAAG+TGG - Chr4:32717860-32717879 None:intergenic 30.0%
GGAGAAGGATGTTAAATTAT+GGG + Chr4:32718519-32718538 MsG0480020041.01.T01:CDS 30.0%
GTATCTTACATTCTTACCAA+TGG - Chr4:32717125-32717144 None:intergenic 30.0%
GTGATTCCTGTAGAAATTAA+TGG - Chr4:32716939-32716958 None:intergenic 30.0%
GTTCTATTTATAATCGTGCA+AGG - Chr4:32716966-32716985 None:intergenic 30.0%
TAAATTAAGTCTCTCGTCAT+GGG - Chr4:32718195-32718214 None:intergenic 30.0%
TAGTATAAAAGAGATGGAGA+AGG + Chr4:32718504-32718523 MsG0480020041.01.T01:CDS 30.0%
TGGAGAAGGATGTTAAATTA+TGG + Chr4:32718518-32718537 MsG0480020041.01.T01:CDS 30.0%
TTGTGATTTCTTTATCTCGA+TGG - Chr4:32717463-32717482 None:intergenic 30.0%
! GCAATCTAAATTTTCAGAGA+TGG + Chr4:32717286-32717305 MsG0480020041.01.T01:intron 30.0%
! TGGTGGTTTACATATTTTCT+AGG + Chr4:32718299-32718318 MsG0480020041.01.T01:CDS 30.0%
! TTCTCCATCTCTTTTATACT+AGG - Chr4:32718505-32718524 None:intergenic 30.0%
!! GAGTTTGTTATTCTTTGCAT+TGG + Chr4:32716588-32716607 MsG0480020041.01.T01:CDS 30.0%
ACTTGGTCAAAAAAGGAATC+AGG - Chr4:32717429-32717448 None:intergenic 35.0%
ATCCTATCATTGCCAATTGT+GGG - Chr4:32718399-32718418 None:intergenic 35.0%
ATTCTTGCCACAGGATATAA+AGG + Chr4:32717552-32717571 MsG0480020041.01.T01:CDS 35.0%
ATTGCTAAATGACACCTTCA+TGG - Chr4:32717816-32717835 None:intergenic 35.0%
CTAAATTAAGTCTCTCGTCA+TGG - Chr4:32718196-32718215 None:intergenic 35.0%
CTAATGAAATGAGATGCCAA+TGG + Chr4:32718446-32718465 MsG0480020041.01.T01:CDS 35.0%
CTAGAAAATGTGCTAACCAT+TGG - Chr4:32718465-32718484 None:intergenic 35.0%
CTTGGTCAAAAAAGGAATCA+GGG - Chr4:32717428-32717447 None:intergenic 35.0%
CTTTGCATTGGGAAATATAG+TGG + Chr4:32716600-32716619 MsG0480020041.01.T01:CDS 35.0%
GGATGTAGTATTTCTTGTAG+TGG - Chr4:32718370-32718389 None:intergenic 35.0%
TACCAATGGTGAAAGTAAAG+TGG - Chr4:32717111-32717130 None:intergenic 35.0%
TATCCTATCATTGCCAATTG+TGG - Chr4:32718400-32718419 None:intergenic 35.0%
TTGCTAAATGACACCTTCAT+GGG - Chr4:32717815-32717834 None:intergenic 35.0%
TTTCTTGTAGTGGTTTACCA+TGG - Chr4:32718360-32718379 None:intergenic 35.0%
! AGATCATGCATTGTTACTTG+TGG + Chr4:32718580-32718599 MsG0480020041.01.T01:CDS 35.0%
! CTAGAAGACACCTTTTATGA+AGG - Chr4:32717892-32717911 None:intergenic 35.0%
! GGTGGTTTACTCAAGTATTT+TGG - Chr4:32717949-32717968 None:intergenic 35.0%
! TGGTTAGCACATTTTCTAGA+TGG + Chr4:32718466-32718485 MsG0480020041.01.T01:CDS 35.0%
AAAAGACCCTTCTTTCTCCT+CGG - Chr4:32718649-32718668 None:intergenic 40.0%
AAAGTGGAAATCACACCTTC+AGG - Chr4:32717844-32717863 None:intergenic 40.0%
AAGTTGCCACTGAAGAAGTA+TGG + Chr4:32717345-32717364 MsG0480020041.01.T01:CDS 40.0%
ACCATTTGCATTTGCGCATT+CGG - Chr4:32716796-32716815 None:intergenic 40.0%
ACTAGTCCATACTTCTTCAG+TGG - Chr4:32717354-32717373 None:intergenic 40.0%
ATCCCACAATTGGCAATGAT+AGG + Chr4:32718394-32718413 MsG0480020041.01.T01:CDS 40.0%
ATGCCCAGAATGTTGAAATC+TGG - Chr4:32717005-32717024 None:intergenic 40.0%
ATTTAGCAATCCACACCTGA+AGG + Chr4:32717826-32717845 MsG0480020041.01.T01:intron 40.0%
CGGAGCTATTTGAACCATAT+GGG + Chr4:32718671-32718690 MsG0480020041.01.T01:CDS 40.0%
CTCCCAGATTTCAACATTCT+GGG + Chr4:32716999-32717018 MsG0480020041.01.T01:CDS 40.0%
GATGTAGTTATTCTTGCCAC+AGG + Chr4:32717543-32717562 MsG0480020041.01.T01:CDS 40.0%
GCAATGATAGGATATGCTGA+GGG + Chr4:32718406-32718425 MsG0480020041.01.T01:CDS 40.0%
GTGAAAGTAAAGTGGCCAAA+AGG - Chr4:32717103-32717122 None:intergenic 40.0%
GTTCAAGGATTTCTCTCTAC+AGG + Chr4:32717631-32717650 MsG0480020041.01.T01:intron 40.0%
TACAAAGGCAGGGATCAAAT+TGG - Chr4:32717970-32717989 None:intergenic 40.0%
TATGTTTGTGTCACATGACG+AGG + Chr4:32718078-32718097 MsG0480020041.01.T01:intron 40.0%
TCGGATTACACTTCATGTCT+CGG - Chr4:32718630-32718649 None:intergenic 40.0%
TCTCCCAGATTTCAACATTC+TGG + Chr4:32716998-32717017 MsG0480020041.01.T01:CDS 40.0%
TGCCCAGAATGTTGAAATCT+GGG - Chr4:32717004-32717023 None:intergenic 40.0%
TGTAATCCGAGGAGAAAGAA+GGG + Chr4:32718640-32718659 MsG0480020041.01.T01:CDS 40.0%
TTATAATCAGTGGGCCCATA+TGG - Chr4:32718688-32718707 None:intergenic 40.0%
TTGGTCACCTTTATATCCTG+TGG - Chr4:32717562-32717581 None:intergenic 40.0%
! AAAGGCCCAGAAGTTTTTAC+AGG + Chr4:32716654-32716673 MsG0480020041.01.T01:CDS 40.0%
! AGCTTTAGCTTCTGCAAAGA+AGG + Chr4:32717483-32717502 MsG0480020041.01.T01:CDS 40.0%
! CGATGGATCCTTCTTTTACT+TGG - Chr4:32717446-32717465 None:intergenic 40.0%
! GAGAAAGAAGGGTCTTTTTG+CGG + Chr4:32718651-32718670 MsG0480020041.01.T01:CDS 40.0%
! GCATTGTTACTTGTGGCATA+TGG + Chr4:32718587-32718606 MsG0480020041.01.T01:CDS 40.0%
! TATGGGCCCACTGATTATAA+TGG + Chr4:32718688-32718707 MsG0480020041.01.T01:CDS 40.0%
! TTCTATGGATTACTCTGCCT+TGG + Chr4:32716689-32716708 MsG0480020041.01.T01:CDS 40.0%
!!! GAACTTTTAGTTCACAAGCC+CGG + Chr4:32717059-32717078 MsG0480020041.01.T01:CDS 40.0%
AAAGACAGAGACCAGTTTGG+TGG + Chr4:32718282-32718301 MsG0480020041.01.T01:intron 45.0%
AAAGGCAGGGATCAAATTGG+TGG - Chr4:32717967-32717986 None:intergenic 45.0%
AACATTCTGGGCATTCGTCT+CGG + Chr4:32717011-32717030 MsG0480020041.01.T01:CDS 45.0%
AGAGTTACAGTAGTAGGCTC+AGG + Chr4:32716747-32716766 MsG0480020041.01.T01:CDS 45.0%
AGCAGCAGTTTCTTTGTCCA+AGG - Chr4:32716709-32716728 None:intergenic 45.0%
CTAAATGACACCTTCATGGG+TGG - Chr4:32717812-32717831 None:intergenic 45.0%
GAGACATGAAGTGTAATCCG+AGG + Chr4:32718629-32718648 MsG0480020041.01.T01:CDS 45.0%
GAGAGTGACTTACAAAGGCA+GGG - Chr4:32717980-32717999 None:intergenic 45.0%
GCGGAGCTATTTGAACCATA+TGG + Chr4:32718670-32718689 MsG0480020041.01.T01:CDS 45.0%
GGCAATGATAGGATATGCTG+AGG + Chr4:32718405-32718424 MsG0480020041.01.T01:CDS 45.0%
GTGTAATCCGAGGAGAAAGA+AGG + Chr4:32718639-32718658 MsG0480020041.01.T01:CDS 45.0%
TCCGAATGCGCAAATGCAAA+TGG + Chr4:32716792-32716811 MsG0480020041.01.T01:CDS 45.0%
TGAGAGTGACTTACAAAGGC+AGG - Chr4:32717981-32718000 None:intergenic 45.0%
TGCAAAGACAGAGACCAGTT+TGG + Chr4:32718279-32718298 MsG0480020041.01.T01:intron 45.0%
! AAAACTTCTGGGCCTTTTCC+AGG - Chr4:32716651-32716670 None:intergenic 45.0%
! AAACTTCTGGGCCTTTTCCA+GGG - Chr4:32716650-32716669 None:intergenic 45.0%
! GGCCACTTTACTTTCACCAT+TGG + Chr4:32717106-32717125 MsG0480020041.01.T01:CDS 45.0%
!! ACACTTCCTTCTTGGCCTTT+TGG + Chr4:32717085-32717104 MsG0480020041.01.T01:CDS 45.0%
AACATTCCTGAGTTCCTCCC+TGG + Chr4:32716630-32716649 MsG0480020041.01.T01:CDS 50.0%
AAGTGGCCAAAAGGCCAAGA+AGG - Chr4:32717094-32717113 None:intergenic 50.0%
ACATCCTCGCATCCCACAAT+TGG + Chr4:32718384-32718403 MsG0480020041.01.T01:CDS 50.0%
ATTGCCAATTGTGGGATGCG+AGG - Chr4:32718391-32718410 None:intergenic 50.0%
GGAAATCACACCTTCAGGTG+TGG - Chr4:32717839-32717858 None:intergenic 50.0%
GGGAGGAACTCAGGAATGTT+TGG - Chr4:32716630-32716649 None:intergenic 50.0%
TTGCTAGAAGCCACCCATGA+AGG + Chr4:32717799-32717818 MsG0480020041.01.T01:intron 50.0%
!! CCAAGAAGGAAGTGTTCTCC+GGG - Chr4:32717080-32717099 None:intergenic 50.0%
!! GCCAAGAAGGAAGTGTTCTC+CGG - Chr4:32717081-32717100 None:intergenic 50.0%
CCCGGAGAACACTTCCTTCT+TGG + Chr4:32717077-32717096 MsG0480020041.01.T01:CDS 55.0%
CCTGAGTTCCTCCCTGGAAA+AGG + Chr4:32716636-32716655 MsG0480020041.01.T01:CDS 55.0%
! CCTTTTCCAGGGAGGAACTC+AGG - Chr4:32716639-32716658 None:intergenic 55.0%
! CTTCTGGGCCTTTTCCAGGG+AGG - Chr4:32716647-32716666 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 32716464 32718726 32716464 ID=MsG0480020041.01;Name=MsG0480020041.01
Chr4 mRNA 32716464 32718726 32716464 ID=MsG0480020041.01.T01;Parent=MsG0480020041.01;Name=MsG0480020041.01.T01;_AED=0.50;_eAED=0.52;_QI=0|0.5|0.2|1|1|1|5|0|379
Chr4 exon 32716464 32716481 32716464 ID=MsG0480020041.01.T01:exon:43115;Parent=MsG0480020041.01.T01
Chr4 exon 32716576 32716813 32716576 ID=MsG0480020041.01.T01:exon:43114;Parent=MsG0480020041.01.T01
Chr4 exon 32716952 32717127 32716952 ID=MsG0480020041.01.T01:exon:43113;Parent=MsG0480020041.01.T01
Chr4 exon 32717303 32717573 32717303 ID=MsG0480020041.01.T01:exon:43112;Parent=MsG0480020041.01.T01
Chr4 exon 32718290 32718726 32718290 ID=MsG0480020041.01.T01:exon:43111;Parent=MsG0480020041.01.T01
Chr4 CDS 32716464 32716481 32716464 ID=MsG0480020041.01.T01:cds;Parent=MsG0480020041.01.T01
Chr4 CDS 32716576 32716813 32716576 ID=MsG0480020041.01.T01:cds;Parent=MsG0480020041.01.T01
Chr4 CDS 32716952 32717127 32716952 ID=MsG0480020041.01.T01:cds;Parent=MsG0480020041.01.T01
Chr4 CDS 32717303 32717573 32717303 ID=MsG0480020041.01.T01:cds;Parent=MsG0480020041.01.T01
Chr4 CDS 32718290 32718726 32718290 ID=MsG0480020041.01.T01:cds;Parent=MsG0480020041.01.T01
Gene Sequence

>MsG0480020041.01.T01

ATGTGTGTAAATTTTGAAGTACATAAAGCAGAGTTTGTTATTCTTTGCATTGGGAAATATAGTGGTTTTCCAAACATTCCTGAGTTCCTCCCTGGAAAAGGCCCAGAAGTTTTTACAGGTAAGTTTATGCATTCTATGGATTACTCTGCCTTGGACAAAGAAACTGCTGCTAAATTGATAAAAAATAAGAGAGTTACAGTAGTAGGCTCAGGAAAATCTGCTCTTGATATAGCTTCCGAATGCGCAAATGCAAATGGAATCACTCACCCTTGCACGATTATAAATAGAACTTCACACTGGTTTCTCCCAGATTTCAACATTCTGGGCATTCGTCTCGGATACTTGTATTTCAATCGTTTCGCAGAACTTTTAGTTCACAAGCCCGGAGAACACTTCCTTCTTGGCCTTTTGGCCACTTTACTTTCACCATTGAGATGGGGAATTTCTAAACTTGTTGAAACATATCTGAAATGGAAGTTGCCACTGAAGAAGTATGGACTAGTACCTAATCATAGTTTTCTTCAAGAAATATCTGCATGTCAAATTGGAATTCTCCCTGATTCCTTTTTTGACCAAGTAAAAGAAGGATCCATCGAGATAAAGAAATCACAAAGCTTTAGCTTCTGCAAAGAAGGTTTGATCATCAATGAAGAAGCTAAGCCCTTAGAAACAGATGTAGTTATTCTTGCCACAGGATATAAAGAGACCAGTTTGGTGGTTTACATATTTTCTAGGAGTGACATAAAAATTTTAAAATTCTCTATACTAATCCATGGTAAACCACTACAAGAAATACTACATCCTCGCATCCCACAATTGGCAATGATAGGATATGCTGAGGGAATATCAAATATTGTTTCTAATGAAATGAGATGCCAATGGTTAGCACATTTTCTAGATGGAAACATTGAATTGCCTAGTATAAAAGAGATGGAGAAGGATGTTAAATTATGGGAAGACAACATGAAGCAATATTCCAGAAAATTTTATTGGAGATCATGCATTGTTACTTGTGGCATATGGTATAATGATCAATTGTGCCGAGACATGAAGTGTAATCCGAGGAGAAAGAAGGGTCTTTTTGCGGAGCTATTTGAACCATATGGGCCCACTGATTATAATGGTCTTGTTCGTAAATGA
Protein sequence

>MsG0480020041.01.T01

MCVNFEVHKAEFVILCIGKYSGFPNIPEFLPGKGPEVFTGKFMHSMDYSALDKETAAKLIKNKRVTVVGSGKSALDIASECANANGITHPCTIINRTSHWFLPDFNILGIRLGYLYFNRFAELLVHKPGEHFLLGLLATLLSPLRWGISKLVETYLKWKLPLKKYGLVPNHSFLQEISACQIGILPDSFFDQVKEGSIEIKKSQSFSFCKEGLIINEEAKPLETDVVILATGYKETSLVVYIFSRSDIKILKFSILIHGKPLQEILHPRIPQLAMIGYAEGISNIVSNEMRCQWLAHFLDGNIELPSIKEMEKDVKLWEDNMKQYSRKFYWRSCIVTCGIWYNDQLCRDMKCNPRRKKGLFAELFEPYGPTDYNGLVRK*