AlfalfaGEDB | MsG0280009566.01

M. sativa cultivar ZhongmuNo.1 / MsG0280009566.01

KEGG: K01011
GO: GO:0004792
PFAM: PF00581

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009566.01.T01	XP_013464237.1	95.161	248	7	1	1	248	33	275	2.90E-168	482

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009566.01.T01	O64530	73.729	236	56	2	14	248	43	273	2.11E-124	363

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009566.01.T01	G8A093	95.161	248	7	1	1	248	33	275	1.38e-168	482

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048801.01	MsG0280009566.01	0.833701	4.583946e-56	5.320302e-53
MsG0180001064.01	MsG0280009566.01	0.838322	3.080273e-57	4.110753e-54
MsG0180001685.01	MsG0280009566.01	0.830470	2.883843e-55	3.040969e-52
MsG0180003156.01	MsG0280009566.01	0.854200	1.441828e-61	3.195563e-58
MsG0180005276.01	MsG0280009566.01	0.810377	1.187886e-50	7.148721e-48
MsG0280008922.01	MsG0280009566.01	0.801778	7.668993e-49	3.693955e-46
MsG0280008942.01	MsG0280009566.01	0.808831	2.552959e-50	1.474749e-47
MsG0280009566.01	MsG0380015897.01	0.804971	1.672030e-49	8.740677e-47
MsG0280009566.01	MsG0380017100.01	0.802808	4.705784e-49	2.327091e-46
MsG0280009566.01	MsG0480022260.01	0.825578	4.343330e-54	3.974564e-51

Showing 1 to 10 of 12 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
MsG0380011707.01	MsG0280009566.01	PPI
MsG0380011707.01	MsG0280009566.01	PPI

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009566.01.T01	MTR_2g067080	95.161	248	7	1	1	248	33	275	3.51e-172	482

Showing 1 to 1 of 1 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280009566.01.T01	AT1G79230	73.729	236	56	2	14	248	43	273	2.15e-125	363
MsG0280009566.01.T01	AT1G79230	76.471	221	47	1	28	248	1	216	1.80e-124	359
MsG0280009566.01.T01	AT1G16460	69.076	249	62	4	3	248	2	238	3.71e-117	339
MsG0280009566.01.T01	AT1G16460	69.076	249	62	4	3	248	2	238	3.19e-116	339
MsG0280009566.01.T01	AT1G16460	73.303	221	52	2	28	248	1	214	2.08e-115	334
MsG0280009566.01.T01	AT1G16460	73.303	221	52	2	28	248	1	214	1.02e-114	334
MsG0280009566.01.T01	AT1G16460	73.303	221	52	2	28	248	1	214	1.02e-114	334
MsG0280009566.01.T01	AT1G16460	73.303	221	52	2	28	248	1	214	1.02e-114	334
MsG0280009566.01.T01	AT1G79230	75.758	99	19	1	150	248	83	176	4.72e-47	160

Showing 1 to 9 of 9 entries

Previous1Next

Find 89 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATATGGCAAGTCTACTAT+AGG	0.431066	2:-54414794	MsG0280009566.01.T01:CDS
AAATGAGCCAGTTGTTTCTG+TGG	0.523826	2:-54418683	MsG0280009566.01.T01:CDS
AACAGGATGTTCCGAGTGTT+TGG	0.303093	2:-54416193	MsG0280009566.01.T01:intron
AAGACAAGTACCTTAATATC+AGG	0.405289	2:+54418634	None:intergenic
AAGGCGTGTCTGACACGTGT+TGG	0.655170	2:-54414738	MsG0280009566.01.T01:CDS
AATACCTGATACTCCTGAAT+TGG	0.378407	2:+54417183	None:intergenic
AATTTAGTCTCAAATGTTAT+TGG	0.174556	2:+54415890	None:intergenic
AATTTCAGCCACATCTTGTT+TGG	0.314101	2:-54415871	MsG0280009566.01.T01:CDS
ACAACAAGACTTTAGATTGA+AGG	0.445750	2:-54414757	MsG0280009566.01.T01:CDS
ACACATGTTGCCATCAGAGG+AGG	0.634014	2:-54416423	MsG0280009566.01.T01:CDS

Showing 1 to 10 of 89 entries

Previous1 2 3 4 5…9Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATATGGCAAGTCTACTAT+AGG	-	Chr2:54418730-54418749	MsG0280009566.01.T01:CDS	30.0%
AAGACAAGTACCTTAATATC+AGG	+	Chr2:54414893-54414912	None:intergenic	30.0%
AAGGAAACAGAGAGAAAATA+AGG	+	Chr2:54417911-54417930	None:intergenic	30.0%
AAGTAATCACTGTCAATCTA+AGG	-	Chr2:54418420-54418439	MsG0280009566.01.T01:intron	30.0%
AATTGCATATTATGTGACTG+TGG	+	Chr2:54415593-54415612	None:intergenic	30.0%
ACAACAAGACTTTAGATTGA+AGG	-	Chr2:54418767-54418786	MsG0280009566.01.T01:CDS	30.0%
AGAAGAATTCAGTACATATG+GGG	-	Chr2:54415652-54415671	MsG0280009566.01.T01:intron	30.0%
GAGAAGAATTCAGTACATAT+GGG	-	Chr2:54415651-54415670	MsG0280009566.01.T01:intron	30.0%
GATGTCAAAGCATAAAACTA+AGG	+	Chr2:54418015-54418034	None:intergenic	30.0%
GTGAGAAATTCTCACTAAAT+GGG	+	Chr2:54416052-54416071	None:intergenic	30.0%

Showing 1 to 10 of 254 entries

Previous1 2 3 4 5…26Next

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	54414704	54418842	54414704	ID=MsG0280009566.01;Name=MsG0280009566.01
Chr2	mRNA	54414704	54418842	54414704	ID=MsG0280009566.01.T01;Parent=MsG0280009566.01;Name=MsG0280009566.01.T01;_AED=0.44;_eAED=0.56;_QI=0\|0.71\|0.62\|1\|0.71\|0.75\|8\|0\|310
Chr2	exon	54418645	54418842	54418645	ID=MsG0280009566.01.T01:exon:38087;Parent=MsG0280009566.01.T01
Chr2	exon	54417188	54417247	54417188	ID=MsG0280009566.01.T01:exon:38088;Parent=MsG0280009566.01.T01
Chr2	exon	54417009	54417071	54417009	ID=MsG0280009566.01.T01:exon:38089;Parent=MsG0280009566.01.T01
Chr2	exon	54416326	54416450	54416326	ID=MsG0280009566.01.T01:exon:38090;Parent=MsG0280009566.01.T01
Chr2	exon	54416048	54416210	54416048	ID=MsG0280009566.01.T01:exon:38091;Parent=MsG0280009566.01.T01
Chr2	exon	54415843	54415918	54415843	ID=MsG0280009566.01.T01:exon:38092;Parent=MsG0280009566.01.T01
Chr2	exon	54415548	54415605	54415548	ID=MsG0280009566.01.T01:exon:38093;Parent=MsG0280009566.01.T01
Chr2	exon	54414704	54414893	54414704	ID=MsG0280009566.01.T01:exon:38094;Parent=MsG0280009566.01.T01
Chr2	CDS	54418645	54418842	54418645	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54417188	54417247	54417188	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54417009	54417071	54417009	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54416326	54416450	54416326	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54416048	54416210	54416048	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54415843	54415918	54415843	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54415548	54415605	54415548	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01
Chr2	CDS	54414704	54414893	54414704	ID=MsG0280009566.01.T01:cds;Parent=MsG0280009566.01.T01

Gene Sequence

>MsG0280009566.01.T01

ATGCAGAAGCGGCTCTTCTCTATACGAGCTGTTCCAACCTCTACAGCCGTAAATACCAAGTCGACTGGTTGGTCTCCTTGTATGGCTTCGTCAATGGTTAGCAGAAGTGCTACATATTCAACACGGTCTGCACCTTCAAATGAGCCAGTTGTTTCTGTGGATTGGCTTTATGATAACCTGAAGGAGCCTGATATTAAGGTGGTGGATGCATCCTGGTACATGCCGGATGAGCAGAGGAATCCAATTCAGGAGTATCAGGTTGCTCACATTCCTGGGGCCCTTTTCTTTGATGTAGATGGAATAGCAGATCGAACTACAAATTTGCCACACATGTTGCCATCAGAGGAGGCTTTTGCTGCTGCTGTTTCTGCTCTTGGCATACAGAACAAAGACGACTTAGTTGTTTATGATGGCAAAGGAATATTTAGTGCAGCTCGTGTTTGGTGGATGTTCCGAGTGTTTGGGCATGACAGAGTTTGGGTCTTAGATGGTGGCCTGCCAAGATGGCGTGCATCTGGTTATGATGTTGAATCTAGTGCTTCCAGTGATGCTATTCTTAAAGCCAGTGCTGCAAGTGAGGCAATAGAGAAAGTATATCAGGGACAAGCAGTTGGTCCAATAACATTTGAGACTAAATTTCAGCCACATCTTGTTTGGAACCTGGAACAGGTTGGTTGCATTGCTAGTAACAAAAATATAGAGGAAAAATCTCACCAACACGTAGATGCTCGGGGAAAGCCCAGGGTTGTGCTCACACTAGATGATAGGGACCGTGTAGATGAACTGGTCCAAGTGGCACCTAATGTGGAGGGCAGGCCCAAAATATGGCAAGTCTACTATAGGAAACAGTTTTTAGAACAACAAGACTTTAGATTGAAGGCGTGTCTGACACGTGTTGGTGTTGTTGGACAATGGACACCAACACGACAGTGA

Protein sequence

>MsG0280009566.01.T01

MQKRLFSIRAVPTSTAVNTKSTGWSPCMASSMVSRSATYSTRSAPSNEPVVSVDWLYDNLKEPDIKVVDASWYMPDEQRNPIQEYQVAHIPGALFFDVDGIADRTTNLPHMLPSEEAFAAAVSALGIQNKDDLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASSDAILKASAASEAIEKVYQGQAVGPITFETKFQPHLVWNLEQVGCIASNKNIEEKSHQHVDARGKPRVVLTLDDRDRVDELVQVAPNVEGRPKIWQVYYRKQFLEQQDFRLKACLTRVGVVGQWTPTRQ*