AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003156.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003156.01.T01 MTR_1g054980 79.810 421 23 3 1 386 1 394 0.0 652
MsG0180003156.01.T01 MTR_1g040560 55.875 383 132 4 1 348 1 381 2.24e-142 412
MsG0180003156.01.T01 MTR_1g040560 45.455 264 107 4 120 348 12 273 4.54e-67 215
MsG0180003156.01.T02 MTR_1g054980 79.810 421 23 3 1 386 1 394 0.0 652
MsG0180003156.01.T02 MTR_1g040560 55.875 383 132 4 1 348 1 381 2.24e-142 412
MsG0180003156.01.T02 MTR_1g040560 45.455 264 107 4 120 348 12 273 4.54e-67 215
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003156.01.T01 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T01 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T01 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T01 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T01 AT1G51420 55.526 380 134 2 1 345 2 381 3.23e-137 399
MsG0180003156.01.T01 AT1G51420 55.526 380 134 2 1 345 2 381 3.23e-137 399
MsG0180003156.01.T01 AT1G51420 55.526 380 134 2 1 345 2 381 3.23e-137 399
MsG0180003156.01.T01 AT1G51420 55.526 380 134 2 1 345 1 380 3.27e-137 399
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 13 389 8.18e-131 383
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 13 389 8.18e-131 383
MsG0180003156.01.T01 AT3G52340 52.255 377 145 2 1 342 42 418 1.80e-130 383
MsG0180003156.01.T01 AT3G54270 47.230 379 164 4 1 343 1 379 1.82e-117 348
MsG0180003156.01.T02 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T02 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T02 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T02 AT2G35840 62.533 379 108 1 1 345 1 379 2.64e-164 468
MsG0180003156.01.T02 AT1G51420 55.526 380 134 2 1 345 2 381 3.23e-137 399
MsG0180003156.01.T02 AT1G51420 55.526 380 134 2 1 345 2 381 3.23e-137 399
MsG0180003156.01.T02 AT1G51420 55.526 380 134 2 1 345 2 381 3.23e-137 399
MsG0180003156.01.T02 AT1G51420 55.526 380 134 2 1 345 1 380 3.27e-137 399
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 1 377 7.82e-131 382
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 13 389 8.18e-131 383
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 13 389 8.18e-131 383
MsG0180003156.01.T02 AT3G52340 52.255 377 145 2 1 342 42 418 1.80e-130 383
MsG0180003156.01.T02 AT3G54270 47.230 379 164 4 1 343 1 379 1.82e-117 348

Find 45 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTAATTTCAATTTGTTT+TGG 0.219656 1:-57580367 None:intergenic
CCAAAACAAATTGAAATTAA+AGG 0.255884 1:+57580367 MsG0180003156.01.T01:five_prime_UTR
TTGATGCTCTGAATTCTAAA+AGG 0.283639 1:+57580540 MsG0180003156.01.T01:five_prime_UTR
AACAGTACCAACAGGATGTT+TGG 0.398924 1:+57580763 MsG0180003156.01.T01:five_prime_UTR
GGTGGAAAAGTAAGGAAATT+CGG 0.428925 1:+57580677 MsG0180003156.01.T01:five_prime_UTR
GAAGAAGAGGTGGAAAAGTA+AGG 0.430829 1:+57580669 MsG0180003156.01.T01:five_prime_UTR
GTGAAGTGGAAGGGAAGGAA+TGG 0.430938 1:-57582502 None:intergenic
TACTTTGCTCAAGGCTGACT+TGG 0.432010 1:-57580231 None:intergenic
GCGGCAATAGGATCGAATTA+AGG 0.434193 1:+57582407 MsG0180003156.01.T01:intron
AACAAAATCTCTTCAAAGGA+TGG 0.441336 1:-57580460 None:intergenic
GAAGGAATGGGAGAAGAAGA+AGG 0.441637 1:-57582489 None:intergenic
TGAAGTGGAAGGGAAGGAAT+GGG 0.462780 1:-57582501 None:intergenic
TGATGCTCTGAATTCTAAAA+GGG 0.471957 1:+57580541 MsG0180003156.01.T01:five_prime_UTR
CTTCCCTTCCACTTCACTAC+CGG 0.476328 1:+57582508 MsG0180003156.01.T01:intron
TAGTAGAAGTTAGCGGCAAT+AGG 0.482352 1:+57582395 MsG0180003156.01.T01:intron
GATTGCATAACAGTACCAAC+AGG 0.483285 1:+57580755 MsG0180003156.01.T01:five_prime_UTR
AAGGAATGGGAGAAGAAGAA+GGG 0.492050 1:-57582488 None:intergenic
TTTATACTCCTTCTCGTGGT+GGG 0.500364 1:-57580343 None:intergenic
TTAAGGTATTCTGATTCGCT+TGG 0.517462 1:+57582424 MsG0180003156.01.T01:intron
ATCAGTTTAAGAAGAAGAGG+TGG 0.520285 1:+57580659 MsG0180003156.01.T01:five_prime_UTR
ACAAAATCTCTTCAAAGGAT+GGG 0.546201 1:-57580459 None:intergenic
GTAATCAGTTTAAGAAGAAG+AGG 0.546888 1:+57580656 MsG0180003156.01.T01:five_prime_UTR
CTGAAACAAAATCTCTTCAA+AGG 0.547774 1:-57580464 None:intergenic
ACGTTGTGTTACTTTGCTCA+AGG 0.557070 1:-57580240 None:intergenic
GTTTATACTCCTTCTCGTGG+TGG 0.560861 1:-57580344 None:intergenic
TCAAGAATTCAAGCCCCGAT+TGG 0.581787 1:-57580422 None:intergenic
CGGTAGTGAAGTGGAAGGGA+AGG 0.583511 1:-57582507 None:intergenic
TTTAGTTTGGTAGCCAATCG+GGG 0.593847 1:+57580409 MsG0180003156.01.T01:five_prime_UTR
AGAAGAAGAAGGGTGGTGAG+TGG 0.595202 1:-57582478 None:intergenic
GGTTATTGTATGAAGAAGAG+AGG 0.598196 1:-57580276 None:intergenic
GGTGTATGAAAGATTAACAA+GGG 0.598868 1:+57580565 MsG0180003156.01.T01:five_prime_UTR
GAATGGGAGAAGAAGAAGGG+TGG 0.601091 1:-57582485 None:intergenic
TGGGTTTATACTCCTTCTCG+TGG 0.605073 1:-57580347 None:intergenic
TATAATACCAAACATCCTGT+TGG 0.610661 1:-57580770 None:intergenic
TGCTCTGAATTCTAAAAGGG+AGG 0.615459 1:+57580544 MsG0180003156.01.T01:five_prime_UTR
TAATTGCTCAATACCTGACG+TGG 0.617022 1:+57580706 MsG0180003156.01.T01:five_prime_UTR
TGTCACTGTTCTGATGCTCA+AGG 0.617914 1:+57580612 MsG0180003156.01.T01:five_prime_UTR
AAGAATCTCCCACCACGAGA+AGG 0.620554 1:+57580335 MsG0180003156.01.T01:five_prime_UTR
AAGAAGGGTGGTGAGTGGTG+AGG 0.622953 1:-57582473 None:intergenic
ATTACCGGTAGTGAAGTGGA+AGG 0.628840 1:-57582512 None:intergenic
CACACATTAGTAGAAGTTAG+CGG 0.631419 1:+57582388 MsG0180003156.01.T01:intron
AGGTGTATGAAAGATTAACA+AGG 0.635840 1:+57580564 MsG0180003156.01.T01:five_prime_UTR
ACAAGGGGAAAATATCATGA+CGG 0.656829 1:+57580581 MsG0180003156.01.T01:five_prime_UTR
TTACCGGTAGTGAAGTGGAA+GGG 0.688968 1:-57582511 None:intergenic
GTGTATGAAAGATTAACAAG+GGG 0.698022 1:+57580566 MsG0180003156.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAATACTGAAAATA+TGG - Chr1:57584320-57584339 None:intergenic 10.0%
!!! AATAAATCGATTTTTAATTA+AGG - Chr1:57581007-57581026 None:intergenic 10.0%
!!! AATTAAAAATCGATTTATTT+TGG + Chr1:57581008-57581027 MsG0180003156.01.T01:intron 10.0%
!!! AATTAAAATTCGATTTATTT+TGG - Chr1:57581263-57581282 None:intergenic 10.0%
!!! ATAAATCGATTTTTAATTAA+GGG - Chr1:57581006-57581025 None:intergenic 10.0%
!!! ATTGTTTGTTTTAATATATA+TGG + Chr1:57580931-57580950 MsG0180003156.01.T01:intron 10.0%
!!! ATTTAATTTAAAGTACAATT+GGG + Chr1:57582875-57582894 MsG0180003156.01.T01:intron 10.0%
!!! TATTTAATTTAAAGTACAAT+TGG + Chr1:57582874-57582893 MsG0180003156.01.T01:intron 10.0%
!!! TATTTTTTTTGTTATATTGT+TGG - Chr1:57581694-57581713 None:intergenic 10.0%
!! AAAAATAGTTTATTGAGAAA+TGG - Chr1:57582638-57582657 None:intergenic 15.0%
!! ATTATTTGTATTCAAAATTG+AGG + Chr1:57581916-57581935 MsG0180003156.01.T01:intron 15.0%
!! ATTTAAAAAAGGCTTAAAAA+AGG - Chr1:57582211-57582230 None:intergenic 15.0%
!! GATGTTAAAATAATATATAG+CGG + Chr1:57584100-57584119 MsG0180003156.01.T01:CDS 15.0%
!! TTATTTATATTGAACATTGA+GGG + Chr1:57580832-57580851 MsG0180003156.01.T01:intron 15.0%
!! TTATTTGTATTCAAAATTGA+GGG + Chr1:57581917-57581936 MsG0180003156.01.T01:intron 15.0%
!!! AATATTAATCATTTGACTTT+TGG + Chr1:57582070-57582089 MsG0180003156.01.T01:intron 15.0%
!!! ACCAAAAAAGTTTTTTTTTT+AGG + Chr1:57581962-57581981 MsG0180003156.01.T01:intron 15.0%
!!! AGTTTTAATTCAAAAATGTT+AGG + Chr1:57581073-57581092 MsG0180003156.01.T01:intron 15.0%
!!! AGTTTTAATTCAAAAATGTT+AGG - Chr1:57581092-57581073 None:intergenic 15.0%
!!! ATAAATAATCATGATTAGTT+TGG - Chr1:57581661-57581680 None:intergenic 15.0%
!!! ATCATTAGTTATTTTTTATG+TGG + Chr1:57585248-57585267 MsG0180003156.01.T01:intron 15.0%
!!! ATTTTAAAAAAGGCTTAAAT+AGG - Chr1:57582258-57582277 None:intergenic 15.0%
!!! ATTTTCTTCTGAAATTTTTA+TGG - Chr1:57581167-57581186 None:intergenic 15.0%
!!! CATTTTTGAATTAAAACTAA+CGG + Chr1:57581200-57581219 MsG0180003156.01.T01:intron 15.0%
!!! CTTTAATTTCAATTTGTTTT+GGG - Chr1:57580369-57580388 None:intergenic 15.0%
!!! CTTTTTATGAAATTTTGATT+TGG + Chr1:57581588-57581607 MsG0180003156.01.T01:intron 15.0%
!!! GTATATAAATATTTTGAGAA+AGG + Chr1:57585601-57585620 MsG0180003156.01.T01:CDS 15.0%
!!! TAGATTATTAGTCTAAAATT+GGG + Chr1:57584355-57584374 MsG0180003156.01.T01:intron 15.0%
!!! TTACACTTTTTAAATGATAA+AGG + Chr1:57581811-57581830 MsG0180003156.01.T01:intron 15.0%
!!! TTAGATTATTAGTCTAAAAT+TGG + Chr1:57584354-57584373 MsG0180003156.01.T01:intron 15.0%
!!! TTTTAATCCCTTAATTATTT+AGG - Chr1:57581306-57581325 None:intergenic 15.0%
!!! TTTTCTTCTGAAATTTTTAT+GGG - Chr1:57581166-57581185 None:intergenic 15.0%
!!! TTTTTTTTTTAGGCTTAAAA+AGG + Chr1:57581972-57581991 MsG0180003156.01.T01:intron 15.0%
!! AAAAAAAAAATGCACCAAAA+AGG - Chr1:57584824-57584843 None:intergenic 20.0%
!! AAAAATACTGAAAATATGGT+TGG - Chr1:57584316-57584335 None:intergenic 20.0%
!! AAGAAAAAAGAAAGAAAGAA+GGG - Chr1:57582594-57582613 None:intergenic 20.0%
!! CAAAAAATTACACAATGTTA+TGG - Chr1:57584073-57584092 None:intergenic 20.0%
!! CATCATAATGATGATTTATT+TGG + Chr1:57582928-57582947 MsG0180003156.01.T01:intron 20.0%
!! CCAAAACAAATTGAAATTAA+AGG + Chr1:57580367-57580386 MsG0180003156.01.T01:five_prime_UTR 20.0%
!! GATACCATCTAAATAATTAA+GGG - Chr1:57580975-57580994 None:intergenic 20.0%
!! GATACTACCTAAATAATTAA+GGG + Chr1:57581296-57581315 MsG0180003156.01.T01:intron 20.0%
!! GTTATTTATATTGAACATTG+AGG + Chr1:57580831-57580850 MsG0180003156.01.T01:intron 20.0%
!! TGTTGTGTAACAATATATAT+TGG - Chr1:57581340-57581359 None:intergenic 20.0%
!!! AACAAAAAACGTATTTTGAT+CGG + Chr1:57582324-57582343 MsG0180003156.01.T01:intron 20.0%
!!! ACTATTTTGTTTTAATATGC+AGG + Chr1:57585526-57585545 MsG0180003156.01.T01:intron 20.0%
!!! ATATTATTTTAACATCCAAC+TGG - Chr1:57584096-57584115 None:intergenic 20.0%
!!! ATTGAATCTCTTTTTTAGTT+TGG + Chr1:57580396-57580415 MsG0180003156.01.T01:five_prime_UTR 20.0%
!!! CCTTTAATTTCAATTTGTTT+TGG - Chr1:57580370-57580389 None:intergenic 20.0%
!!! GCCTAAAAAAAAAACTTTTT+TGG - Chr1:57581966-57581985 None:intergenic 20.0%
!!! TATTATCTTGTTTTGACAAT+TGG + Chr1:57585175-57585194 MsG0180003156.01.T01:intron 20.0%
!!! TCTTTTGGGTTATTTAAAAA+AGG - Chr1:57582222-57582241 None:intergenic 20.0%
!!! TGATTCATATTTTGAATGAT+CGG + Chr1:57583822-57583841 MsG0180003156.01.T01:intron 20.0%
!!! TGCTTTAGTAAAAAGAATTT+TGG - Chr1:57584799-57584818 None:intergenic 20.0%
!!! TGTAATGCATAAGTATTTTA+TGG + Chr1:57585865-57585884 MsG0180003156.01.T01:CDS 20.0%
!!! TTATTGAGAAATGGAAATTT+TGG - Chr1:57582629-57582648 None:intergenic 20.0%
!!! TTGAAAATTGAGAGTATTTT+TGG + Chr1:57581432-57581451 MsG0180003156.01.T01:intron 20.0%
!!! TTTGGTAATATTTTCTACTT+TGG + Chr1:57585131-57585150 MsG0180003156.01.T01:intron 20.0%
!!! TTTTTTTAAAGAAGTGTAGT+TGG - Chr1:57581740-57581759 None:intergenic 20.0%
! AAAGGGAAATGAAAAATTAC+CGG - Chr1:57582530-57582549 None:intergenic 25.0%
! ATGATATGAAGATGAAAAAG+AGG - Chr1:57581117-57581136 None:intergenic 25.0%
! ATGCATAAAGAACATACAAT+AGG - Chr1:57584746-57584765 None:intergenic 25.0%
! CAAATGATTAATATTTGCAG+TGG - Chr1:57582065-57582084 None:intergenic 25.0%
! CGAGAAAAACATAATACTAA+TGG - Chr1:57583173-57583192 None:intergenic 25.0%
! CGATACCATCTAAATAATTA+AGG - Chr1:57580976-57580995 None:intergenic 25.0%
! CGATACTACCTAAATAATTA+AGG + Chr1:57581295-57581314 MsG0180003156.01.T01:intron 25.0%
! GAAATCATTTCTGAGTAAAA+TGG - Chr1:57583980-57583999 None:intergenic 25.0%
! GAAGAAAAAAGAAAGAAAGA+AGG - Chr1:57582595-57582614 None:intergenic 25.0%
! GTTAAAATAATATATAGCGG+AGG + Chr1:57584103-57584122 MsG0180003156.01.T01:CDS 25.0%
! GTTCAACCATTATAACAATT+CGG + Chr1:57585345-57585364 MsG0180003156.01.T01:intron 25.0%
! TAGTCCCTTAATTATTTAGA+TGG + Chr1:57580968-57580987 MsG0180003156.01.T01:intron 25.0%
! TCTATTCCGAATTGTTATAA+TGG - Chr1:57585354-57585373 None:intergenic 25.0%
! TGAGGATGATATAACAATAA+CGG - Chr1:57582458-57582477 None:intergenic 25.0%
! TTATATACTCCTTAAGAGAA+TGG - Chr1:57585589-57585608 None:intergenic 25.0%
! TTCATGGATGAAAATTCAAA+TGG - Chr1:57582021-57582040 None:intergenic 25.0%
! TTGAATTAAAACTAACGGAA+AGG + Chr1:57581205-57581224 MsG0180003156.01.T01:intron 25.0%
! TTTAAATAACCCAAAAGAGT+TGG + Chr1:57582224-57582243 MsG0180003156.01.T01:intron 25.0%
! TTTGTTGAATTTCTAATCAC+AGG + Chr1:57583032-57583051 MsG0180003156.01.T01:intron 25.0%
!! ATGCATCTAAAGTTAAATCA+AGG - Chr1:57585099-57585118 None:intergenic 25.0%
!! ATTATTAGTTTGAGCAACAA+TGG + Chr1:57583783-57583802 MsG0180003156.01.T01:intron 25.0%
!! TGATTTAACTTTAGATGCAT+TGG + Chr1:57585099-57585118 MsG0180003156.01.T01:intron 25.0%
!! TTGGTGTTTAATTTCTGTTT+AGG + Chr1:57582947-57582966 MsG0180003156.01.T01:intron 25.0%
!! TTTTTATCTATATCTTCCGA+AGG + Chr1:57584926-57584945 MsG0180003156.01.T01:intron 25.0%
!!! AAAAACCTTTCAGCTTTTTT+TGG - Chr1:57580883-57580902 None:intergenic 25.0%
!!! AAATTGAGAGTATTTTTGGA+AGG + Chr1:57581436-57581455 MsG0180003156.01.T01:intron 25.0%
!!! AATATTTTGAGAAAGGTGTA+TGG + Chr1:57585608-57585627 MsG0180003156.01.T01:CDS 25.0%
!!! ACTACTTATTTTAGCACTTT+TGG - Chr1:57581473-57581492 None:intergenic 25.0%
!!! CTACTTATTTTAGCACTTTT+GGG - Chr1:57581472-57581491 None:intergenic 25.0%
!!! CTCAAACTTTTTAAGCAAAT+AGG - Chr1:57584179-57584198 None:intergenic 25.0%
!!! GTGTATTTTAGTGACTAAAT+TGG - Chr1:57582837-57582856 None:intergenic 25.0%
!!! TTTACTAAAGCATTCCTTTT+TGG + Chr1:57584807-57584826 MsG0180003156.01.T01:intron 25.0%
!!! TTTTTCATTTTCGAGTTTCA+TGG + Chr1:57584839-57584858 MsG0180003156.01.T01:intron 25.0%
AAAAAAGAAAGAAAGAAGGG+TGG - Chr1:57582591-57582610 None:intergenic 30.0%
AAATGACCAAAATGTGTAAC+GGG - Chr1:57581048-57581067 None:intergenic 30.0%
AAATTCTGAGTATACCAAAC+AGG + Chr1:57584868-57584887 MsG0180003156.01.T01:intron 30.0%
AACAAAATCTCTTCAAAGGA+TGG - Chr1:57580463-57580482 None:intergenic 30.0%
AAGTACAATTGGGACTAAAT+TGG + Chr1:57582885-57582904 MsG0180003156.01.T01:intron 30.0%
AAGTTCGAGAGATATAAAAG+AGG - Chr1:57585784-57585803 None:intergenic 30.0%
AATTTCTGTTTAGGAAGAGA+AGG + Chr1:57582956-57582975 MsG0180003156.01.T01:intron 30.0%
ACAAAATCTCTTCAAAGGAT+GGG - Chr1:57580462-57580481 None:intergenic 30.0%
ACTAAATTGGCGAGATTAAA+TGG - Chr1:57582824-57582843 None:intergenic 30.0%
AGGTGTATGAAAGATTAACA+AGG + Chr1:57580564-57580583 MsG0180003156.01.T01:five_prime_UTR 30.0%
AGTTCGAGAGATATAAAAGA+GGG - Chr1:57585783-57585802 None:intergenic 30.0%
ATAGGCAATCTGTAAAAGTA+AGG - Chr1:57584728-57584747 None:intergenic 30.0%
ATGTAAAAACTGCACAAATG+CGG - Chr1:57585075-57585094 None:intergenic 30.0%
ATTTCTGTTTAGGAAGAGAA+GGG + Chr1:57582957-57582976 MsG0180003156.01.T01:intron 30.0%
CAAATCATGTGTATATACGT+TGG + Chr1:57584003-57584022 MsG0180003156.01.T01:intron 30.0%
CCTCAGCAAAAAAACTAATT+AGG - Chr1:57582097-57582116 None:intergenic 30.0%
CTGAAACAAAATCTCTTCAA+AGG - Chr1:57580467-57580486 None:intergenic 30.0%
GAAATGACCAAAATGTGTAA+CGG - Chr1:57581049-57581068 None:intergenic 30.0%
GATTACTTATGGAAAATCGA+TGG + Chr1:57583567-57583586 MsG0180003156.01.T01:CDS 30.0%
GGTGTATGAAAGATTAACAA+GGG + Chr1:57580565-57580584 MsG0180003156.01.T01:five_prime_UTR 30.0%
GTAATCAGTTTAAGAAGAAG+AGG + Chr1:57580656-57580675 MsG0180003156.01.T01:five_prime_UTR 30.0%
GTGATCAAGAAAAGAGATTA+TGG - Chr1:57585451-57585470 None:intergenic 30.0%
GTGTATGAAAGATTAACAAG+GGG + Chr1:57580566-57580585 MsG0180003156.01.T01:five_prime_UTR 30.0%
TACACATACCTTTCTTAGTA+TGG - Chr1:57585849-57585868 None:intergenic 30.0%
TAGGCAATCTGTAAAAGTAA+GGG - Chr1:57584727-57584746 None:intergenic 30.0%
TATAATACCAAACATCCTGT+TGG - Chr1:57580773-57580792 None:intergenic 30.0%
TCAAGAATTGAACCAGAAAT+GGG + Chr1:57583609-57583628 MsG0180003156.01.T01:CDS 30.0%
TTATTTAGATGGTATCGCTT+TGG + Chr1:57580979-57580998 MsG0180003156.01.T01:intron 30.0%
TTATTTAGGTAGTATCGCTT+TGG - Chr1:57581292-57581311 None:intergenic 30.0%
TTCAAGAATTGAACCAGAAA+TGG + Chr1:57583608-57583627 MsG0180003156.01.T01:CDS 30.0%
TTTGATAAATGGGAGTTACA+CGG + Chr1:57585713-57585732 MsG0180003156.01.T01:CDS 30.0%
TTTGTCTGTTAAGTGAAAAG+TGG + Chr1:57584631-57584650 MsG0180003156.01.T01:CDS 30.0%
! AGGGTTATCTTTTGCATTTT+CGG - Chr1:57584458-57584477 None:intergenic 30.0%
! CTTAAAAAGTTTGAGACTGA+GGG + Chr1:57584184-57584203 MsG0180003156.01.T01:CDS 30.0%
! GTTATATCTGGAGTTATCAT+AGG - Chr1:57583526-57583545 None:intergenic 30.0%
! TCTGTTGATGAAAGATATTC+TGG - Chr1:57585217-57585236 None:intergenic 30.0%
! TGATGCTCTGAATTCTAAAA+GGG + Chr1:57580541-57580560 MsG0180003156.01.T01:five_prime_UTR 30.0%
! TTATTGTTTTCTGTGAACCA+TGG + Chr1:57583720-57583739 MsG0180003156.01.T01:intron 30.0%
! TTGATGCTCTGAATTCTAAA+AGG + Chr1:57580540-57580559 MsG0180003156.01.T01:five_prime_UTR 30.0%
!! AACTTGCTAAAGCTTAATCA+AGG - Chr1:57584977-57584996 None:intergenic 30.0%
!! CAAGTTCTGAGTTTACAAAA+AGG + Chr1:57584991-57585010 MsG0180003156.01.T01:intron 30.0%
!! TTGCTTTTCAATTTCCTGTT+TGG - Chr1:57584885-57584904 None:intergenic 30.0%
!!! AATTAGTTTTTTTGCTGAGG+TGG + Chr1:57582097-57582116 MsG0180003156.01.T01:intron 30.0%
!!! ATTAGTTTTTTTGCTGAGGT+GGG + Chr1:57582098-57582117 MsG0180003156.01.T01:intron 30.0%
!!! CCTAATTAGTTTTTTTGCTG+AGG + Chr1:57582094-57582113 MsG0180003156.01.T01:intron 30.0%
!!! TTATTTTAGCACTTTTGGGT+TGG - Chr1:57581468-57581487 None:intergenic 30.0%
!!! TTCAAAATTGAGGGCATTTT+TGG + Chr1:57581926-57581945 MsG0180003156.01.T01:intron 30.0%
!!! TTGTGTAATTTTTTGCCAGT+TGG + Chr1:57584078-57584097 MsG0180003156.01.T01:intron 30.0%
!!! TTTTTAGTTTGGTAGCCAAT+CGG + Chr1:57580407-57580426 MsG0180003156.01.T01:five_prime_UTR 30.0%
AAAAATTACCGGTAGTGAAG+TGG - Chr1:57582519-57582538 None:intergenic 35.0%
AACTCTTGCATAAAGACTCA+TGG - Chr1:57585486-57585505 None:intergenic 35.0%
AAGGGATATCAATCATACAG+TGG - Chr1:57584709-57584728 None:intergenic 35.0%
AAGGTGTATGGTAACAAACA+GGG + Chr1:57585620-57585639 MsG0180003156.01.T01:CDS 35.0%
AAGTTAGGGATTGTACATCA+TGG + Chr1:57583058-57583077 MsG0180003156.01.T01:intron 35.0%
ACAAGGGGAAAATATCATGA+CGG + Chr1:57580581-57580600 MsG0180003156.01.T01:five_prime_UTR 35.0%
ACAATAACGGTAGTGAAGAA+AGG - Chr1:57582548-57582567 None:intergenic 35.0%
ACAGACATGATGGTTATATC+TGG - Chr1:57583538-57583557 None:intergenic 35.0%
AGATATAACCATCATGTCTG+TGG + Chr1:57583537-57583556 MsG0180003156.01.T01:CDS 35.0%
ATATCAACCACTCAAATCAC+AGG - Chr1:57583351-57583370 None:intergenic 35.0%
ATCAGTTTAAGAAGAAGAGG+TGG + Chr1:57580659-57580678 MsG0180003156.01.T01:five_prime_UTR 35.0%
ATGCAAAAACTGCACAAATG+AGG - Chr1:57584953-57584972 None:intergenic 35.0%
ATTCGGAATAGACATTTCCA+TGG + Chr1:57585362-57585381 MsG0180003156.01.T01:intron 35.0%
CAATAAAAAGAGCGGAAAGA+TGG - Chr1:57581538-57581557 None:intergenic 35.0%
CAATAACGGTAGTGAAGAAA+GGG - Chr1:57582547-57582566 None:intergenic 35.0%
CACACATTAGTAGAAGTTAG+CGG + Chr1:57582388-57582407 MsG0180003156.01.T01:intron 35.0%
CACAGATAAGTTCGGATATA+TGG + Chr1:57585681-57585700 MsG0180003156.01.T01:CDS 35.0%
CTAATCACAGGATCAAGTTA+GGG + Chr1:57583044-57583063 MsG0180003156.01.T01:intron 35.0%
CTCAGTTGTTTGTAGAGTAA+AGG - Chr1:57583493-57583512 None:intergenic 35.0%
CTTTACTCTACAAACAACTG+AGG + Chr1:57583491-57583510 MsG0180003156.01.T01:CDS 35.0%
GAAAGGACCAAAATGTGTAA+CGG + Chr1:57581222-57581241 MsG0180003156.01.T01:intron 35.0%
GACATGGATATATTACCACA+AGG + Chr1:57584130-57584149 MsG0180003156.01.T01:CDS 35.0%
GATATAACCATCATGTCTGT+GGG + Chr1:57583538-57583557 MsG0180003156.01.T01:CDS 35.0%
GCTGGTGAAGTTTGATAAAT+GGG + Chr1:57585703-57585722 MsG0180003156.01.T01:CDS 35.0%
GCTGTTTATTGCTGCTATAA+AGG + Chr1:57584680-57584699 MsG0180003156.01.T01:CDS 35.0%
GGTATTCACTGTGATTTGAT+TGG + Chr1:57583697-57583716 MsG0180003156.01.T01:intron 35.0%
GGTGGAAAAGTAAGGAAATT+CGG + Chr1:57580677-57580696 MsG0180003156.01.T01:five_prime_UTR 35.0%
GGTTATTGTATGAAGAAGAG+AGG - Chr1:57580279-57580298 None:intergenic 35.0%
GTTCGAGAGATATAAAAGAG+GGG - Chr1:57585782-57585801 None:intergenic 35.0%
TAATATTTGCAGTGGCAGAT+TGG - Chr1:57582057-57582076 None:intergenic 35.0%
TACGAAGTTCAGTGTTATAG+AGG + Chr1:57583314-57583333 MsG0180003156.01.T01:intron 35.0%
TCAAATGGCCTATATTTGCA+GGG - Chr1:57582006-57582025 None:intergenic 35.0%
TCAAGAAAAGAGATTATGGC+AGG - Chr1:57585447-57585466 None:intergenic 35.0%
TCTAATCACAGGATCAAGTT+AGG + Chr1:57583043-57583062 MsG0180003156.01.T01:intron 35.0%
TGCTAGTGCAATAAAAAGAG+CGG - Chr1:57581546-57581565 None:intergenic 35.0%
TGTCACTACCATACTAAGAA+AGG + Chr1:57585838-57585857 MsG0180003156.01.T01:CDS 35.0%
TTCAAATGGCCTATATTTGC+AGG - Chr1:57582007-57582026 None:intergenic 35.0%
TTCGAGAGATATAAAAGAGG+GGG - Chr1:57585781-57585800 None:intergenic 35.0%
TTCGGAATAGACATTTCCAT+GGG + Chr1:57585363-57585382 MsG0180003156.01.T01:intron 35.0%
TTTAATATGCAGGATCCATC+TGG + Chr1:57585536-57585555 MsG0180003156.01.T01:intron 35.0%
! AAAGGTGTATGGTAACAAAC+AGG + Chr1:57585619-57585638 MsG0180003156.01.T01:CDS 35.0%
! ACTGTGTCGAATTGTTGTTA+AGG + Chr1:57582673-57582692 MsG0180003156.01.T01:intron 35.0%
! CAATGTCTGAAACATCTCTT+GGG - Chr1:57584560-57584579 None:intergenic 35.0%
! CTTTTCTCCGTTACACATTT+TGG - Chr1:57581232-57581251 None:intergenic 35.0%
! GAAACAGTTTAGGATATGGT+TGG + Chr1:57585643-57585662 MsG0180003156.01.T01:CDS 35.0%
! GCTTAAAAAGTTTGAGACTG+AGG + Chr1:57584183-57584202 MsG0180003156.01.T01:CDS 35.0%
! GTCTTTTGTCCAACTCTTTT+GGG - Chr1:57582236-57582255 None:intergenic 35.0%
! GTGTAACGGAGAAAAGTTAA+GGG + Chr1:57581236-57581255 MsG0180003156.01.T01:intron 35.0%
! GTTGATATGTTTCTGATTGC+AGG + Chr1:57583363-57583382 MsG0180003156.01.T01:intron 35.0%
! TGGAAGGATTAGTAACTTCA+TGG - Chr1:57582037-57582056 None:intergenic 35.0%
! TGTGTAACGGAGAAAAGTTA+AGG + Chr1:57581235-57581254 MsG0180003156.01.T01:intron 35.0%
! TTAAGGTATTCTGATTCGCT+TGG + Chr1:57582424-57582443 MsG0180003156.01.T01:intron 35.0%
!! GGAAATTTTGGTAGCTTGAT+TGG - Chr1:57582617-57582636 None:intergenic 35.0%
!! TATGGGATTCTTGTTGTTGA+AGG - Chr1:57581149-57581168 None:intergenic 35.0%
!! TCAAGGTGATTGGCTTAAAT+AGG + Chr1:57582164-57582183 MsG0180003156.01.T01:intron 35.0%
!! TGCATCTGTTTCTGTTCATT+GGG + Chr1:57584392-57584411 MsG0180003156.01.T01:CDS 35.0%
!! TTCTTGTTGTTGAAGGTTGA+TGG - Chr1:57581142-57581161 None:intergenic 35.0%
!!! AGAGGCTCTTTCTAAGATTT+TGG + Chr1:57583921-57583940 MsG0180003156.01.T01:CDS 35.0%
!!! AGCCATAGGTCATTTTAACT+TGG + Chr1:57584522-57584541 MsG0180003156.01.T01:intron 35.0%
!!! GCCATAGGTCATTTTAACTT+GGG + Chr1:57584523-57584542 MsG0180003156.01.T01:intron 35.0%
!!! TTTGTTTTGTTGCTTGTTCG+TGG - Chr1:57580300-57580319 None:intergenic 35.0%
!!! TTTTAGTTTGGTAGCCAATC+GGG + Chr1:57580408-57580427 MsG0180003156.01.T01:five_prime_UTR 35.0%
AACAGTACCAACAGGATGTT+TGG + Chr1:57580763-57580782 MsG0180003156.01.T01:five_prime_UTR 40.0%
AAGGAATGGGAGAAGAAGAA+GGG - Chr1:57582491-57582510 None:intergenic 40.0%
ACAAACAGGGGAAACAGTTT+AGG + Chr1:57585633-57585652 MsG0180003156.01.T01:CDS 40.0%
ACCAATCATCACTTGTCACA+TGG - Chr1:57582145-57582164 None:intergenic 40.0%
AGAACACCAGTAAAGAATCG+TGG - Chr1:57583456-57583475 None:intergenic 40.0%
AGGTGTATGGTAACAAACAG+GGG + Chr1:57585621-57585640 MsG0180003156.01.T01:CDS 40.0%
ATAGACTCAAATCTTCTGCG+CGG + Chr1:57583081-57583100 MsG0180003156.01.T01:CDS 40.0%
ATATCGCCACGATTCTTTAC+TGG + Chr1:57583447-57583466 MsG0180003156.01.T01:CDS 40.0%
ATTGAACCAGAAATGGGACA+AGG + Chr1:57583615-57583634 MsG0180003156.01.T01:CDS 40.0%
CAACAATGGCTTCAATCAAG+TGG + Chr1:57583797-57583816 MsG0180003156.01.T01:intron 40.0%
CAATACCTGACGTGGAAAAA+AGG + Chr1:57580714-57580733 MsG0180003156.01.T01:five_prime_UTR 40.0%
CCAAGAGATGTTTCAGACAT+TGG + Chr1:57584558-57584577 MsG0180003156.01.T01:intron 40.0%
CCAATCATCACTTGTCACAT+GGG - Chr1:57582144-57582163 None:intergenic 40.0%
GAAAAGAGATTATGGCAGGA+AGG - Chr1:57585443-57585462 None:intergenic 40.0%
GAAGAAGAGGTGGAAAAGTA+AGG + Chr1:57580669-57580688 MsG0180003156.01.T01:five_prime_UTR 40.0%
GACTAAACTAACCAAGGTGA+AGG + Chr1:57582350-57582369 MsG0180003156.01.T01:intron 40.0%
GATAAGTTCGGATATATGGC+TGG + Chr1:57585685-57585704 MsG0180003156.01.T01:CDS 40.0%
GATATATTACCACAAGGTGC+TGG + Chr1:57584136-57584155 MsG0180003156.01.T01:CDS 40.0%
GATATGGTTGGACAATGTGT+TGG + Chr1:57585655-57585674 MsG0180003156.01.T01:CDS 40.0%
GATTGCATAACAGTACCAAC+AGG + Chr1:57580755-57580774 MsG0180003156.01.T01:five_prime_UTR 40.0%
GCCCAAGTTAAAATGACCTA+TGG - Chr1:57584527-57584546 None:intergenic 40.0%
GGACTACATTTCAAATACGC+AGG - Chr1:57584778-57584797 None:intergenic 40.0%
GGCTGGTGAAGTTTGATAAA+TGG + Chr1:57585702-57585721 MsG0180003156.01.T01:CDS 40.0%
GTCAGCCAAAAAAAGCTGAA+AGG + Chr1:57580875-57580894 MsG0180003156.01.T01:intron 40.0%
GTGGGAACTGAGATTACTTA+TGG + Chr1:57583556-57583575 MsG0180003156.01.T01:CDS 40.0%
GTTGGCTACACAGATAAGTT+CGG + Chr1:57585673-57585692 MsG0180003156.01.T01:CDS 40.0%
TAAAGAATCGTGGCGATATG+AGG - Chr1:57583446-57583465 None:intergenic 40.0%
TAATTGCTCAATACCTGACG+TGG + Chr1:57580706-57580725 MsG0180003156.01.T01:five_prime_UTR 40.0%
TACCATTGTGTGATCGAGAT+CGG - Chr1:57583120-57583139 None:intergenic 40.0%
TAGTAGAAGTTAGCGGCAAT+AGG + Chr1:57582395-57582414 MsG0180003156.01.T01:intron 40.0%
TAGTGAACCTGTGATTTGAG+TGG + Chr1:57583341-57583360 MsG0180003156.01.T01:intron 40.0%
TCTTTACTGGTGTTCTCAAC+TGG + Chr1:57583460-57583479 MsG0180003156.01.T01:CDS 40.0%
TCTTTCGTCCCTGCAAATAT+AGG + Chr1:57581995-57582014 MsG0180003156.01.T01:intron 40.0%
TTCAGCATTCCAGGAGTTTA+TGG + Chr1:57584262-57584281 MsG0180003156.01.T01:CDS 40.0%
TTTATACTCCTTCTCGTGGT+GGG - Chr1:57580346-57580365 None:intergenic 40.0%
! AGGGGAAACAGTTTAGGATA+TGG + Chr1:57585639-57585658 MsG0180003156.01.T01:CDS 40.0%
! ATACCTACTCAAAGTACCTG+AGG - Chr1:57583682-57583701 None:intergenic 40.0%
! ATGCATTGGTCACTTTGCTT+TGG + Chr1:57585113-57585132 MsG0180003156.01.T01:intron 40.0%
! CCAATGTCTGAAACATCTCT+TGG - Chr1:57584561-57584580 None:intergenic 40.0%
! CTTCTTCCCGTTACACATTT+TGG + Chr1:57581039-57581058 MsG0180003156.01.T01:intron 40.0%
! GGTCTTTTGTCCAACTCTTT+TGG - Chr1:57582237-57582256 None:intergenic 40.0%
! GTGTAACGGGAAGAAGTTAA+GGG - Chr1:57581035-57581054 None:intergenic 40.0%
! TCTGGGATTATACAAGCCAT+AGG + Chr1:57584508-57584527 MsG0180003156.01.T01:intron 40.0%
! TGACAAGTGATGATTGGTCA+AGG + Chr1:57582147-57582166 MsG0180003156.01.T01:intron 40.0%
! TGATGATTGGTCAAGGTGAT+TGG + Chr1:57582154-57582173 MsG0180003156.01.T01:intron 40.0%
! TGCTCTGAATTCTAAAAGGG+AGG + Chr1:57580544-57580563 MsG0180003156.01.T01:five_prime_UTR 40.0%
! TGTGTAACGGGAAGAAGTTA+AGG - Chr1:57581036-57581055 None:intergenic 40.0%
! TTTGAGGTTCAATGCCCTTT+GGG + Chr1:57583417-57583436 MsG0180003156.01.T01:CDS 40.0%
! TTTTCTGTGAACCATGGATC+AGG + Chr1:57583726-57583745 MsG0180003156.01.T01:intron 40.0%
! TTTTGAATGATCGGTACTGC+AGG + Chr1:57583831-57583850 MsG0180003156.01.T01:intron 40.0%
!! ACGTTGTGTTACTTTGCTCA+AGG - Chr1:57580243-57580262 None:intergenic 40.0%
!! CTGCATCTGTTTCTGTTCAT+TGG + Chr1:57584391-57584410 MsG0180003156.01.T01:CDS 40.0%
!! TCTGTTTCTGTTCATTGGGT+AGG + Chr1:57584396-57584415 MsG0180003156.01.T01:CDS 40.0%
!! TTTAGTTTGGTAGCCAATCG+GGG + Chr1:57580409-57580428 MsG0180003156.01.T01:five_prime_UTR 40.0%
!!! TCTAAGATTTTGGAACAGCG+CGG + Chr1:57583931-57583950 MsG0180003156.01.T01:CDS 40.0%
!!! TCTTTCCTTTTTTCCACGTC+AGG - Chr1:57580722-57580741 None:intergenic 40.0%
!!! TTTTGAGGTTCAATGCCCTT+TGG + Chr1:57583416-57583435 MsG0180003156.01.T01:CDS 40.0%
AAAGAAAGAAGGGTGGTGAG+TGG - Chr1:57582584-57582603 None:intergenic 45.0%
AAATCGATGGTTCCCGATGA+TGG + Chr1:57583580-57583599 MsG0180003156.01.T01:CDS 45.0%
AACATCTCTTGGGACAGGTT+TGG - Chr1:57584550-57584569 None:intergenic 45.0%
AAGCCTCAGGTACTTTGAGT+AGG + Chr1:57583676-57583695 MsG0180003156.01.T01:intron 45.0%
AATCGATGGTTCCCGATGAT+GGG + Chr1:57583581-57583600 MsG0180003156.01.T01:CDS 45.0%
ACATCTCTTGGGACAGGTTT+GGG - Chr1:57584549-57584568 None:intergenic 45.0%
ACCATGACACCATAAACTCC+TGG - Chr1:57584274-57584293 None:intergenic 45.0%
ACGTGCAGAAGTTGAGAACT+CGG + Chr1:57584656-57584675 MsG0180003156.01.T01:CDS 45.0%
ACGTTGACACCAACATGTGT+CGG + Chr1:57583272-57583291 MsG0180003156.01.T01:intron 45.0%
ACTGCACAAATGAGGTCCTT+CGG - Chr1:57584945-57584964 None:intergenic 45.0%
ACTTTAGTGCAGTTCTCCCA+TGG - Chr1:57585382-57585401 None:intergenic 45.0%
AGTACCTGAGGCTTAAGTTC+AGG - Chr1:57583670-57583689 None:intergenic 45.0%
ATTACCGGTAGTGAAGTGGA+AGG - Chr1:57582515-57582534 None:intergenic 45.0%
ATTTGCAGTGGCAGATTGGA+AGG - Chr1:57582053-57582072 None:intergenic 45.0%
CAATGCTAAGCAAGTGACAG+AGG + Chr1:57583903-57583922 MsG0180003156.01.T01:CDS 45.0%
CAATGTCCTTGTCCCATTTC+TGG - Chr1:57583624-57583643 None:intergenic 45.0%
CCACTGCAGTAATTCCTCTT+GGG - Chr1:57584431-57584450 None:intergenic 45.0%
CCCATGTGACAAGTGATGAT+TGG + Chr1:57582141-57582160 MsG0180003156.01.T01:intron 45.0%
CGGAGTGACTAAACTAACCA+AGG + Chr1:57582344-57582363 MsG0180003156.01.T01:intron 45.0%
CTGAGGCATGCAGAATCTTA+GGG - Chr1:57584477-57584496 None:intergenic 45.0%
GAAGGAATGGGAGAAGAAGA+AGG - Chr1:57582492-57582511 None:intergenic 45.0%
GAATAGCTCGGCATCATTTC+CGG - Chr1:57584245-57584264 None:intergenic 45.0%
GCGGCAATAGGATCGAATTA+AGG + Chr1:57582407-57582426 MsG0180003156.01.T01:intron 45.0%
GGACAAGGACATTGTCATTG+AGG + Chr1:57583630-57583649 MsG0180003156.01.T01:CDS 45.0%
GTTTATACTCCTTCTCGTGG+TGG - Chr1:57580347-57580366 None:intergenic 45.0%
GTTTCCTGAACTTAAGCCTC+AGG + Chr1:57583663-57583682 MsG0180003156.01.T01:CDS 45.0%
TCAAGAATTCAAGCCCCGAT+TGG - Chr1:57580425-57580444 None:intergenic 45.0%
TCAGCAATCAACCTTCACCT+TGG - Chr1:57582364-57582383 None:intergenic 45.0%
TCCTGGAATGCTGAATAGCT+CGG - Chr1:57584257-57584276 None:intergenic 45.0%
TGAAGTGGAAGGGAAGGAAT+GGG - Chr1:57582504-57582523 None:intergenic 45.0%
TGCAGGCAGAAACAGAACAA+CGG + Chr1:57583848-57583867 MsG0180003156.01.T01:intron 45.0%
TGGGTTTATACTCCTTCTCG+TGG - Chr1:57580350-57580369 None:intergenic 45.0%
TGTCAACGTGTCAATGTGTC+TGG - Chr1:57583261-57583280 None:intergenic 45.0%
TGTCACTGTTCTGATGCTCA+AGG + Chr1:57580612-57580631 MsG0180003156.01.T01:five_prime_UTR 45.0%
TTACCGGTAGTGAAGTGGAA+GGG - Chr1:57582514-57582533 None:intergenic 45.0%
TTCCGATCTCGATCACACAA+TGG + Chr1:57583115-57583134 MsG0180003156.01.T01:CDS 45.0%
TTCTTGAACCCACCCATCAT+CGG - Chr1:57583596-57583615 None:intergenic 45.0%
! ATATAGCGGAGGAGTTGACA+TGG + Chr1:57584114-57584133 MsG0180003156.01.T01:CDS 45.0%
! TCCAGGAGTTTATGGTGTCA+TGG + Chr1:57584270-57584289 MsG0180003156.01.T01:CDS 45.0%
! TCTGAAACATCTCTTGGGAC+AGG - Chr1:57584555-57584574 None:intergenic 45.0%
! TCTGAGGCATGCAGAATCTT+AGG - Chr1:57584478-57584497 None:intergenic 45.0%
!! CAGAGAATAGCTCGCTTTTG+AGG + Chr1:57583401-57583420 MsG0180003156.01.T01:CDS 45.0%
!! GGAGTTTATGGTGTCATGGT+TGG + Chr1:57584274-57584293 MsG0180003156.01.T01:intron 45.0%
!! TGGTGCTGACCATTCTCTTA+AGG + Chr1:57585577-57585596 MsG0180003156.01.T01:CDS 45.0%
!!! CTAAGATTTTGGAACAGCGC+GGG + Chr1:57583932-57583951 MsG0180003156.01.T01:CDS 45.0%
!!! TAAGATTTTGGAACAGCGCG+GGG + Chr1:57583933-57583952 MsG0180003156.01.T01:CDS 45.0%
!!! AATATCTATAATTTTAAAAA+AGG - Chr1:57582268-57582287 None:intergenic 5.0%
AAGAATCTCCCACCACGAGA+AGG + Chr1:57580335-57580354 MsG0180003156.01.T01:five_prime_UTR 50.0%
AGAAGAAGAAGGGTGGTGAG+TGG - Chr1:57582481-57582500 None:intergenic 50.0%
AGAGAATGGTCAGCACCAGA+AGG - Chr1:57585575-57585594 None:intergenic 50.0%
CCCAAGAGGAATTACTGCAG+TGG + Chr1:57584428-57584447 MsG0180003156.01.T01:intron 50.0%
CTCAGTTCCCACAGACATGA+TGG - Chr1:57583548-57583567 None:intergenic 50.0%
CTTCCCTTCCACTTCACTAC+CGG + Chr1:57582508-57582527 MsG0180003156.01.T01:intron 50.0%
GAATGGGAGAAGAAGAAGGG+TGG - Chr1:57582488-57582507 None:intergenic 50.0%
GAGAATGGTCAGCACCAGAA+GGG - Chr1:57585574-57585593 None:intergenic 50.0%
GCAGGCAGAAACAGAACAAC+GGG + Chr1:57583849-57583868 MsG0180003156.01.T01:intron 50.0%
GCCAACTTGCAGATGAAGAG+CGG + Chr1:57585804-57585823 MsG0180003156.01.T01:CDS 50.0%
GCCACTGCAGTAATTCCTCT+TGG - Chr1:57584432-57584451 None:intergenic 50.0%
GCGAGCTATTCTCTGTGTCA+TGG - Chr1:57583396-57583415 None:intergenic 50.0%
GCGATATGAGGCTTCCCAAA+GGG - Chr1:57583434-57583453 None:intergenic 50.0%
GCGTGATATCCGACACATGT+TGG - Chr1:57583284-57583303 None:intergenic 50.0%
GGGTGGATATACACACCAGA+TGG - Chr1:57585554-57585573 None:intergenic 50.0%
GGTGTGTATATCCACCCTTC+TGG + Chr1:57585557-57585576 MsG0180003156.01.T01:CDS 50.0%
GTGAAGTGGAAGGGAAGGAA+TGG - Chr1:57582505-57582524 None:intergenic 50.0%
GTGTCTGTGTCAGTGCTTCA+TGG - Chr1:57583233-57583252 None:intergenic 50.0%
TACTGGTGTTCTCAACTGGC+AGG + Chr1:57583464-57583483 MsG0180003156.01.T01:CDS 50.0%
TCTTGAACCCACCCATCATC+GGG - Chr1:57583595-57583614 None:intergenic 50.0%
!! TTACCACAAGGTGCTGGCAA+AGG + Chr1:57584142-57584161 MsG0180003156.01.T01:CDS 50.0%
AAGAAGGGTGGTGAGTGGTG+AGG - Chr1:57582476-57582495 None:intergenic 55.0%
AATGGTCAGCACCAGAAGGG+TGG - Chr1:57585571-57585590 None:intergenic 55.0%
CGGTAGTGAAGTGGAAGGGA+AGG - Chr1:57582510-57582529 None:intergenic 55.0%
CTTGCAGATGAAGAGCGGCA+TGG + Chr1:57585809-57585828 MsG0180003156.01.T01:CDS 55.0%
GAGACTGAGGGAAAGCTACC+TGG + Chr1:57584196-57584215 MsG0180003156.01.T01:CDS 55.0%
GCCGAGCTATTCAGCATTCC+AGG + Chr1:57584253-57584272 MsG0180003156.01.T01:CDS 55.0%
GCCGCTCTTCATCTGCAAGT+TGG - Chr1:57585808-57585827 None:intergenic 55.0%
GCTAGCGAGTTCCTGATCCA+TGG - Chr1:57583740-57583759 None:intergenic 55.0%
GGCGATATGAGGCTTCCCAA+AGG - Chr1:57583435-57583454 None:intergenic 55.0%
GTAGGTAAGCAACGCCCAAG+AGG + Chr1:57584414-57584433 MsG0180003156.01.T01:intron 55.0%
TGACCTTTGCCAGCACCTTG+TGG - Chr1:57584148-57584167 None:intergenic 55.0%
! GTGGGTTGTCATTAGCGACG+TGG + Chr1:57582116-57582135 MsG0180003156.01.T01:intron 55.0%
!! GATGGTTCCCGATGATGGGT+GGG + Chr1:57583585-57583604 MsG0180003156.01.T01:CDS 55.0%
!! CCTCAGAGCGCTGTGCATCT+GGG + Chr1:57584491-57584510 MsG0180003156.01.T01:intron 60.0%
!! CGATGGTTCCCGATGATGGG+TGG + Chr1:57583584-57583603 MsG0180003156.01.T01:CDS 60.0%
CCCAGATGCACAGCGCTCTG+AGG - Chr1:57584494-57584513 None:intergenic 65.0%
!! GCCTCAGAGCGCTGTGCATC+TGG + Chr1:57584490-57584509 MsG0180003156.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 57580233 57585892 57580233 ID=MsG0180003156.01;Name=MsG0180003156.01
Chr1 mRNA 57580233 57585892 57580233 ID=MsG0180003156.01.T01;Parent=MsG0180003156.01;Name=MsG0180003156.01.T01;_AED=0.45;_eAED=0.49;_QI=575|0.71|0.62|1|0.85|0.75|8|0|396
Chr1 exon 57580233 57580784 57580233 ID=MsG0180003156.01.T01:exon:3526;Parent=MsG0180003156.01.T01
Chr1 five_prime_UTR 57580233 57580784 57580233 ID=MsG0180003156.01.T01:five_prime_utr;Parent=MsG0180003156.01.T01
Chr1 five_prime_UTR 57583054 57583076 57583054 ID=MsG0180003156.01.T01:five_prime_utr;Parent=MsG0180003156.01.T01
Chr1 CDS 57583077 57583136 57583077 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 CDS 57583385 57583684 57583385 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 CDS 57583853 57583954 57583853 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 CDS 57584097 57584291 57584097 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 CDS 57584366 57584417 57584366 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 CDS 57584574 57584710 57584574 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 CDS 57585548 57585892 57585548 ID=MsG0180003156.01.T01:cds;Parent=MsG0180003156.01.T01
Chr1 mRNA 57582389 57585892 57582389 ID=MsG0180003156.01.T02;Parent=MsG0180003156.01;Name=MsG0180003156.01.T02;_AED=0.46;_eAED=0.51;_QI=164|0.71|0.62|1|0.85|0.75|8|0|396
Chr1 exon 57582389 57582529 57582389 ID=MsG0180003156.01.T02:exon:3534;Parent=MsG0180003156.01.T02
Chr1 five_prime_UTR 57582389 57582529 57582389 ID=MsG0180003156.01.T02:five_prime_utr;Parent=MsG0180003156.01.T02
Chr1 five_prime_UTR 57583054 57583076 57583054 ID=MsG0180003156.01.T02:five_prime_utr;Parent=MsG0180003156.01.T02
Chr1 CDS 57583077 57583136 57583077 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Chr1 CDS 57583385 57583684 57583385 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Chr1 CDS 57583853 57583954 57583853 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Chr1 CDS 57584097 57584291 57584097 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Chr1 CDS 57584366 57584417 57584366 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Chr1 CDS 57584574 57584710 57584574 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Chr1 CDS 57585548 57585892 57585548 ID=MsG0180003156.01.T02:cds;Parent=MsG0180003156.01.T02
Gene Sequence

>MsG0180003156.01.T01

ATGGATAGACTCAAATCTTCTGCGCGGCTCATGATTGTTTCCGATCTCGATCACACAATGGTTGATCACCATGACACAGAGAATAGCTCGCTTTTGAGGTTCAATGCCCTTTGGGAAGCCTCATATCGCCACGATTCTTTACTGGTGTTCTCAACTGGCAGGTCGCCTTTACTCTACAAACAACTGAGGAAAGAGAAGCCTATGATAACTCCAGATATAACCATCATGTCTGTGGGAACTGAGATTACTTATGGAAAATCGATGGTTCCCGATGATGGGTGGGTTCAAGAATTGAACCAGAAATGGGACAAGGACATTGTCATTGAGGAAGCAAGCAAGTTTCCTGAACTTAAGCCTCAGGCAGAAACAGAACAACGGGCACACAAAGTTAGCTTTTATGTAGAGAAAGACAATGCTAAGCAAGTGACAGAGGCTCTTTCTAAGATTTTGGAACAGCGCGGGTTGGATGTTAAAATAATATATAGCGGAGGAGTTGACATGGATATATTACCACAAGGTGCTGGCAAAGGTCAAGCTCTTGCCTATTTGCTTAAAAAGTTTGAGACTGAGGGAAAGCTACCTGGTAATACTCTAGTATGTGGTGACTCCGGAAATGATGCCGAGCTATTCAGCATTCCAGGAGTTTATGGTGTCATGTCTAAAATTGGGATGTCTTTGCATGCTGCATCTGTTTCTGTTCATTGGGTAGACATTGGACAAGAACAGAGTGTTGAAAATGTGTCTGCAGTTCAAGAAATAGTGAACTTTTGTCTGTTAAGTGAAAAGTGGAGACGTGCAGAAGTTGAGAACTCGGAGCTGTTTATTGCTGCTATAAAGGCATCCACTGATCCATCTGGTGTGTATATCCACCCTTCTGGTGCTGACCATTCTCTTAAGGAGTATATAAATATTTTGAGAAAGGTGTATGGTAACAAACAGGGGAAACAGTTTAGGATATGGTTGGACAATGTGTTGGCTACACAGATAAGTTCGGATATATGGCTGGTGAAGTTTGATAAATGGGAGTTACACGGTATGAGTTTGCTCTACTTTTTATTATTTATGTTCATTTCATTCCCCCTCTTTTATATCTCTCGAACTTGCCAACTTGCAGATGAAGAGCGGCATGGTTGTGTTGTCACTACCATACTAAGAAAGGTATGTGTAATGCATAAGTATTTTATGGAGTGA

>MsG0180003156.01.T02

ATGGATAGACTCAAATCTTCTGCGCGGCTCATGATTGTTTCCGATCTCGATCACACAATGGTTGATCACCATGACACAGAGAATAGCTCGCTTTTGAGGTTCAATGCCCTTTGGGAAGCCTCATATCGCCACGATTCTTTACTGGTGTTCTCAACTGGCAGGTCGCCTTTACTCTACAAACAACTGAGGAAAGAGAAGCCTATGATAACTCCAGATATAACCATCATGTCTGTGGGAACTGAGATTACTTATGGAAAATCGATGGTTCCCGATGATGGGTGGGTTCAAGAATTGAACCAGAAATGGGACAAGGACATTGTCATTGAGGAAGCAAGCAAGTTTCCTGAACTTAAGCCTCAGGCAGAAACAGAACAACGGGCACACAAAGTTAGCTTTTATGTAGAGAAAGACAATGCTAAGCAAGTGACAGAGGCTCTTTCTAAGATTTTGGAACAGCGCGGGTTGGATGTTAAAATAATATATAGCGGAGGAGTTGACATGGATATATTACCACAAGGTGCTGGCAAAGGTCAAGCTCTTGCCTATTTGCTTAAAAAGTTTGAGACTGAGGGAAAGCTACCTGGTAATACTCTAGTATGTGGTGACTCCGGAAATGATGCCGAGCTATTCAGCATTCCAGGAGTTTATGGTGTCATGTCTAAAATTGGGATGTCTTTGCATGCTGCATCTGTTTCTGTTCATTGGGTAGACATTGGACAAGAACAGAGTGTTGAAAATGTGTCTGCAGTTCAAGAAATAGTGAACTTTTGTCTGTTAAGTGAAAAGTGGAGACGTGCAGAAGTTGAGAACTCGGAGCTGTTTATTGCTGCTATAAAGGCATCCACTGATCCATCTGGTGTGTATATCCACCCTTCTGGTGCTGACCATTCTCTTAAGGAGTATATAAATATTTTGAGAAAGGTGTATGGTAACAAACAGGGGAAACAGTTTAGGATATGGTTGGACAATGTGTTGGCTACACAGATAAGTTCGGATATATGGCTGGTGAAGTTTGATAAATGGGAGTTACACGGTATGAGTTTGCTCTACTTTTTATTATTTATGTTCATTTCATTCCCCCTCTTTTATATCTCTCGAACTTGCCAACTTGCAGATGAAGAGCGGCATGGTTGTGTTGTCACTACCATACTAAGAAAGGTATGTGTAATGCATAAGTATTTTATGGAGTGA

Protein sequence

>MsG0180003156.01.T01

MDRLKSSARLMIVSDLDHTMVDHHDTENSSLLRFNALWEASYRHDSLLVFSTGRSPLLYKQLRKEKPMITPDITIMSVGTEITYGKSMVPDDGWVQELNQKWDKDIVIEEASKFPELKPQAETEQRAHKVSFYVEKDNAKQVTEALSKILEQRGLDVKIIYSGGVDMDILPQGAGKGQALAYLLKKFETEGKLPGNTLVCGDSGNDAELFSIPGVYGVMSKIGMSLHAASVSVHWVDIGQEQSVENVSAVQEIVNFCLLSEKWRRAEVENSELFIAAIKASTDPSGVYIHPSGADHSLKEYINILRKVYGNKQGKQFRIWLDNVLATQISSDIWLVKFDKWELHGMSLLYFLLFMFISFPLFYISRTCQLADEERHGCVVTTILRKVCVMHKYFME*

>MsG0180003156.01.T02

MDRLKSSARLMIVSDLDHTMVDHHDTENSSLLRFNALWEASYRHDSLLVFSTGRSPLLYKQLRKEKPMITPDITIMSVGTEITYGKSMVPDDGWVQELNQKWDKDIVIEEASKFPELKPQAETEQRAHKVSFYVEKDNAKQVTEALSKILEQRGLDVKIIYSGGVDMDILPQGAGKGQALAYLLKKFETEGKLPGNTLVCGDSGNDAELFSIPGVYGVMSKIGMSLHAASVSVHWVDIGQEQSVENVSAVQEIVNFCLLSEKWRRAEVENSELFIAAIKASTDPSGVYIHPSGADHSLKEYINILRKVYGNKQGKQFRIWLDNVLATQISSDIWLVKFDKWELHGMSLLYFLLFMFISFPLFYISRTCQLADEERHGCVVTTILRKVCVMHKYFME*