AlfalfaGEDB | MsG0080048301.01

M. sativa cultivar ZhongmuNo.1 / MsG0080048301.01

KEGG: K03294
GO: GO:0016020 GO:0022857 GO:0055085
PFAM: PF13520

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048301.01.T01	XP_024628323.1	97.534	365	9	0	1	365	1	365	0	732

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048301.01.T01	Q84MA5	73.333	360	94	1	8	365	3	362	0	561

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048301.01.T01	A0A396GQL0	97.534	365	9	0	1	365	1	365	0.0	732

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0080048301.01	0.813368	2.651811e-51	1.728506e-48
MsG0080048036.01	MsG0080048301.01	0.867697	1.130223e-65	3.982196e-62
MsG0080048301.01	MsG0080048302.01	0.858798	6.432957e-63	1.661879e-59
MsG0080048301.01	MsG0080048345.01	0.818916	1.526944e-52	1.158269e-49
MsG0080048301.01	MsG0080048347.01	0.854647	1.070819e-61	2.408112e-58
MsG0080048301.01	MsG0080048348.01	0.805587	1.242031e-49	6.596267e-47
MsG0080048301.01	MsG0080048349.01	0.816991	4.156185e-52	2.990150e-49
MsG0080048301.01	MsG0080048350.01	0.806766	7.014940e-50	3.839588e-47
MsG0080048301.01	MsG0080048352.01	0.854364	1.292685e-61	2.879782e-58
MsG0080048301.01	MsG0080049015.01	-0.800930	1.143900e-48	5.393356e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048301.01.T01	MTR_8g089320	94.034	352	21	0	14	365	13	364	0.0	689
MsG0080048301.01.T01	MTR_8g089360	78.198	344	75	0	22	365	9	352	0.0	541
MsG0080048301.01.T01	MTR_8g089360	78.198	344	75	0	22	365	26	369	0.0	541
MsG0080048301.01.T01	MTR_1g030660	68.249	337	107	0	29	365	23	359	1.10e-172	494
MsG0080048301.01.T01	MTR_2g035430	61.272	346	134	0	20	365	19	364	6.53e-157	454
MsG0080048301.01.T01	MTR_8g089340	98.148	216	4	0	150	365	1	216	6.59e-150	431
MsG0080048301.01.T01	MTR_8g461380	50.857	350	172	0	15	364	21	370	2.51e-120	360
MsG0080048301.01.T01	MTR_1g111740	44.928	345	181	1	29	364	6	350	2.84e-97	300
MsG0080048301.01.T01	MTR_8g089342	96.403	139	5	0	1	139	1	139	8.95e-96	281
MsG0080048301.01.T01	MTR_4g099270	44.578	332	180	2	35	362	5	336	3.12e-92	282

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0080048301.01.T01	AT4G21120	73.333	360	94	1	8	365	3	362	0.0	561
MsG0080048301.01.T01	AT2G34960	58.192	354	147	1	12	365	3	355	2.67e-149	434
MsG0080048301.01.T01	AT1G17120	53.846	351	162	0	14	364	22	372	1.69e-128	381
MsG0080048301.01.T01	AT4G21120	73.113	212	57	0	154	365	1	212	1.15e-110	330
MsG0080048301.01.T01	AT5G04770	41.570	344	191	2	31	364	15	358	7.93e-94	286
MsG0080048301.01.T01	AT5G04770	41.570	344	191	2	31	364	15	358	3.34e-91	285
MsG0080048301.01.T01	AT3G10600	40.922	347	195	2	28	364	11	357	9.32e-89	279
MsG0080048301.01.T01	AT3G03720	34.177	316	199	3	54	362	7	320	5.58e-57	196
MsG0080048301.01.T01	AT5G36940	33.951	324	207	3	48	364	4	327	9.41e-56	192
MsG0080048301.01.T01	AT1G58030	35.099	302	189	3	70	364	37	338	6.03e-55	191

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Find 102 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGATCCTTCAACCGGAG+AGG	0.694839	contig26end:-21286	None:intergenic
AAACTACGGAAAATCTATCA+TGG	0.496080	contig26end:+21258	MsG0080048301.01.T01:CDS
AAAGGAATGACAACGGTTTG+TGG	0.464118	contig26end:+27121	MsG0080048301.01.T01:CDS
AACTCTTAAACGACTCCTCC+GGG	0.489247	contig26end:-21231	None:intergenic
AATATAAGCAAAGAAAAGAA+CGG	0.627891	contig26end:-26867	None:intergenic
ACAAACGACAACACAACTGC+CGG	0.550560	contig26end:-21478	None:intergenic
ACCATTCCATGCAACCCGAA+AGG	0.616795	contig26end:-26833	None:intergenic
ACGCCGCGGTAGCTCGATCA+TGG	0.494424	contig26end:+26552	MsG0080048301.01.T01:CDS
ACTAGAGCTCCAATAGCAAT+AGG	0.367625	contig26end:-26665	None:intergenic
ACTATTATACGAAAATCATC+AGG	0.434415	contig26end:-26608	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAAGCAATTTGATGGG+GGG	+	contig26end:24245-24264	MsG0080048301.01.T01:intron	30.0%
AAACGACTCTTATCTTAAGA+CGG	+	contig26end:22431-22450	MsG0080048301.01.T01:intron	30.0%
AAACTACGGAAAATCTATCA+TGG	+	contig26end:21258-21277	MsG0080048301.01.T01:CDS	30.0%
AAAGACTGACAAAATTGTCA+AGG	+	contig26end:23228-23247	MsG0080048301.01.T01:intron	30.0%
AATACTACTACCAATTCCTT+TGG	-	contig26end:25651-25670	None:intergenic	30.0%
AATGTCCTAATAACACTTGA+AGG	-	contig26end:24426-24445	None:intergenic	30.0%
AGACAATTATTTCAAGACGA+AGG	-	contig26end:22311-22330	None:intergenic	30.0%
AGATGAAAGATTAAAAACGC+AGG	-	contig26end:23095-23114	None:intergenic	30.0%
ATACACGAGTTTGAAGAAAA+TGG	+	contig26end:23590-23609	MsG0080048301.01.T01:intron	30.0%
CATTAGAAGACAAATGCAAA+AGG	+	contig26end:23912-23931	MsG0080048301.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
contig26end	gene	21154	27147	21154	ID=MsG0080048301.01;Name=MsG0080048301.01
contig26end	mRNA	21154	27147	21154	ID=MsG0080048301.01.T01;Parent=MsG0080048301.01;Name=MsG0080048301.01.T01;_AED=0.42;_eAED=0.42;_QI=0\|0\|0\|1\|1\|0.5\|2\|0\|367
contig26end	exon	21154	21571	21154	ID=MsG0080048301.01.T01:exon:22974;Parent=MsG0080048301.01.T01
contig26end	exon	26462	27147	26462	ID=MsG0080048301.01.T01:exon:22973;Parent=MsG0080048301.01.T01
contig26end	CDS	21154	21571	21154	ID=MsG0080048301.01.T01:cds;Parent=MsG0080048301.01.T01
contig26end	CDS	26462	27147	26462	ID=MsG0080048301.01.T01:cds;Parent=MsG0080048301.01.T01

Gene Sequence

>MsG0080048301.01.T01

ATGGCGGTTGGAGAGGTGGTTGACGGCGGCGGAGGAGTACGTAGAAGAGGATGTACGTTTCAGAAAAACGACTTCTTCCCGGAGGAGTCGTTTAAGAGTTGGGAAAACTACGGAAAATCTATCATGGAAACACCTCTCCGGTTGAAGGATCGTTTGTTGAAACGGTCCAGTGATCATGCAGAGCTGGTGGAGATTAAGGCTAGGAGTGGGAATGAGATGAAGAAGACACTGAATTGGTGGGACTTGATGTGGTTTGGTATCGGCGCTGTTGTCGGCTCCGGAATATTTGTGCTTACCGGACTTGAGGCTAAGGAGCATGCAGGTCCGGCAGTTGTGTTGTCGTTTGTCATCTCCGGTATATCTGCTTTGTTATCAGTGTTTTGTTATACAGAGTTTGCTGTGGAAATTCCGGTTGCTGGTGGATCATTTGCTTACTTGAGAGTAGAAATGGGAGATTTTGTTGCCTTCATAGCTGCCGGAAACATCCTCCTTGAATATGTCATAGGCAACGCCGCGGTAGCTCGATCATGGACCTCCTATTTTGCCACCCTCTGCAACAAAAACCCTGATGATTTTCGTATAATAGTCCACAATATGAACCCTGACTATGGCCATCTTGACCCTATTGCTATTGGAGCTCTAGTAGCCATCACAGCCCTTGCAGTTTACAGCACCAAAGGCTCTTCCATCTTCAACTACATAGCCACAATGTTCCACATGGCTGTCATTATCTTCATAGTAATTGCTGGTCTCAGCAAAGCCAAAACCGAAAACTTCAATGACTTCACTCCTTTCGGGTTGCATGGAATGGTCAGTTCTTCGGCCGTTCTTTTCTTTGCTTATATTGGCTTTGATGCAGTTTCAACTATGGCTGAAGAAACTAAAAACCCTGGTAGAGACATTCCTATTGGTCTAGTTGGATCAATGACTATTACAACAGCAATATATTGCTTACTAGCAGCAACACTTTGTCTTATGCAGAATTACAAAGAACTTGATCCTGATGCTCCTTTCTCAGTTGCTTTTAGTGCTGTTGGAATGGATTGGGCTAAGTACATCGTTTCATTAGGTGCTTTGAAAGGAATGACAACGGTTTGTGGTTAG

Protein sequence

>MsG0080048301.01.T01

MAVGEVVDGGGGVRRRGCTFQKNDFFPEESFKSWENYGKSIMETPLRLKDRLLKRSSDHAELVEIKARSGNEMKKTLNWWDLMWFGIGAVVGSGIFVLTGLEAKEHAGPAVVLSFVISGISALLSVFCYTEFAVEIPVAGGSFAYLRVEMGDFVAFIAAGNILLEYVIGNAAVARSWTSYFATLCNKNPDDFRIIVHNMNPDYGHLDPIAIGALVAITALAVYSTKGSSIFNYIATMFHMAVIIFIVIAGLSKAKTENFNDFTPFGLHGMVSSSAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMTITTAIYCLLAATLCLMQNYKELDPDAPFSVAFSAVGMDWAKYIVSLGALKGMTTVCG*