AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048301.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048301.01.T01 MTR_8g089320 94.034 352 21 0 14 365 13 364 0.0 689
MsG0080048301.01.T01 MTR_8g089360 78.198 344 75 0 22 365 9 352 0.0 541
MsG0080048301.01.T01 MTR_8g089360 78.198 344 75 0 22 365 26 369 0.0 541
MsG0080048301.01.T01 MTR_1g030660 68.249 337 107 0 29 365 23 359 1.10e-172 494
MsG0080048301.01.T01 MTR_2g035430 61.272 346 134 0 20 365 19 364 6.53e-157 454
MsG0080048301.01.T01 MTR_8g089340 98.148 216 4 0 150 365 1 216 6.59e-150 431
MsG0080048301.01.T01 MTR_8g461380 50.857 350 172 0 15 364 21 370 2.51e-120 360
MsG0080048301.01.T01 MTR_1g111740 44.928 345 181 1 29 364 6 350 2.84e-97 300
MsG0080048301.01.T01 MTR_8g089342 96.403 139 5 0 1 139 1 139 8.95e-96 281
MsG0080048301.01.T01 MTR_4g099270 44.578 332 180 2 35 362 5 336 3.12e-92 282
MsG0080048301.01.T01 MTR_4g099270 44.884 303 163 2 35 333 5 307 7.72e-86 262
MsG0080048301.01.T01 MTR_4g099270 44.444 315 171 2 52 362 1 315 4.49e-83 263
MsG0080048301.01.T01 MTR_6g027630 36.095 338 206 5 35 364 6 341 3.08e-61 206
MsG0080048301.01.T01 MTR_6g027630 36.095 338 206 5 35 364 6 341 8.04e-61 206
MsG0080048301.01.T01 MTR_7g086510 37.582 306 184 2 64 362 29 334 2.00e-59 203
MsG0080048301.01.T01 MTR_6g027680 36.156 307 187 3 66 364 39 344 2.34e-57 196
MsG0080048301.01.T01 MTR_6g027650 37.294 303 181 4 70 364 33 334 2.77e-57 197
MsG0080048301.01.T01 MTR_6g027660 32.659 346 220 4 26 364 3 342 1.46e-56 195
MsG0080048301.01.T01 MTR_7g086610 37.333 300 179 3 73 364 32 330 7.51e-56 193
MsG0080048301.01.T01 MTR_7g007850 33.433 335 198 7 42 364 24 345 1.03e-48 171
MsG0080048301.01.T01 MTR_7g007850 33.433 335 198 7 42 364 24 345 1.91e-48 171
MsG0080048301.01.T01 MTR_7g007850 33.433 335 198 7 42 364 24 345 3.89e-48 171
MsG0080048301.01.T01 MTR_7g007850 33.433 335 198 7 42 364 24 345 4.49e-48 171
MsG0080048301.01.T01 MTR_4g099270 42.365 203 113 2 164 362 1 203 1.52e-46 164
MsG0080048301.01.T01 MTR_6g027630 35.019 257 158 4 116 364 1 256 5.94e-41 151
MsG0080048301.01.T01 MTR_6g034535 41.667 96 31 1 99 194 19 89 1.07e-14 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048301.01.T01 AT4G21120 73.333 360 94 1 8 365 3 362 0.0 561
MsG0080048301.01.T01 AT2G34960 58.192 354 147 1 12 365 3 355 2.67e-149 434
MsG0080048301.01.T01 AT1G17120 53.846 351 162 0 14 364 22 372 1.69e-128 381
MsG0080048301.01.T01 AT4G21120 73.113 212 57 0 154 365 1 212 1.15e-110 330
MsG0080048301.01.T01 AT5G04770 41.570 344 191 2 31 364 15 358 7.93e-94 286
MsG0080048301.01.T01 AT5G04770 41.570 344 191 2 31 364 15 358 3.34e-91 285
MsG0080048301.01.T01 AT3G10600 40.922 347 195 2 28 364 11 357 9.32e-89 279
MsG0080048301.01.T01 AT3G03720 34.177 316 199 3 54 362 7 320 5.58e-57 196
MsG0080048301.01.T01 AT5G36940 33.951 324 207 3 48 364 4 327 9.41e-56 192
MsG0080048301.01.T01 AT1G58030 35.099 302 189 3 70 364 37 338 6.03e-55 191
MsG0080048301.01.T01 AT1G05940 32.051 312 194 4 65 364 40 345 1.53e-49 174
MsG0080048301.01.T01 AT1G05940 32.051 312 194 4 65 364 40 345 3.83e-49 173
MsG0080048301.01.T01 AT1G05940 32.051 312 194 4 65 364 40 345 6.84e-49 173
MsG0080048301.01.T01 AT3G10600 37.915 211 121 2 164 364 1 211 2.72e-44 158
MsG0080048301.01.T01 AT5G04770 38.389 211 120 2 164 364 1 211 8.70e-42 152
MsG0080048301.01.T01 AT1G05940 30.357 224 140 2 152 364 9 227 5.81e-27 111

Find 102 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGACTTCACTCCTTTC+GGG 0.224601 contig26end:+26819 MsG0080048301.01.T01:CDS
TTCAATGACTTCACTCCTTT+CGG 0.234746 contig26end:+26818 MsG0080048301.01.T01:CDS
GTTGCAGAGGGTGGCAAAAT+AGG 0.283118 contig26end:-26579 None:intergenic
TGCAGAGCTGGTGGAGATTA+AGG 0.299520 contig26end:+21330 MsG0080048301.01.T01:CDS
CTTTGATGCAGTTTCAACTA+TGG 0.326491 contig26end:+26892 MsG0080048301.01.T01:CDS
CATCTTGACCCTATTGCTAT+TGG 0.330251 contig26end:+26656 MsG0080048301.01.T01:CDS
TGCTTACTTGAGAGTAGAAA+TGG 0.338114 contig26end:+26472 MsG0080048301.01.T01:CDS
GACATTCCTATTGGTCTAGT+TGG 0.348285 contig26end:+26941 MsG0080048301.01.T01:CDS
CACAATATGAACCCTGACTA+TGG 0.355787 contig26end:+26632 MsG0080048301.01.T01:CDS
GCTAAGTACATCGTTTCATT+AGG 0.362872 contig26end:+27091 MsG0080048301.01.T01:CDS
ACTAGAGCTCCAATAGCAAT+AGG 0.367625 contig26end:-26665 None:intergenic
ATATTCAAGGAGGATGTTTC+CGG 0.371568 contig26end:-26519 None:intergenic
TCCGGAATATTTGTGCTTAC+CGG 0.375172 contig26end:+21430 MsG0080048301.01.T01:CDS
GCTGTGGAAATTCCGGTTGC+TGG 0.377288 contig26end:+21550 MsG0080048301.01.T01:CDS
TAGTGCTGTTGGAATGGATT+GGG 0.389974 contig26end:+27069 MsG0080048301.01.T01:CDS
TCCGGTAAGCACAAATATTC+CGG 0.393998 contig26end:-21431 None:intergenic
GGGTCAAGATGGCCATAGTC+AGG 0.395099 contig26end:-26644 None:intergenic
TGGTGGGACTTGATGTGGTT+TGG 0.401009 contig26end:+21388 MsG0080048301.01.T01:CDS
GAGGTGGTTGACGGCGGCGG+AGG 0.404581 contig26end:+21166 MsG0080048301.01.T01:CDS
GCATGGAATGGTCAGTTCTT+CGG 0.404608 contig26end:+26844 MsG0080048301.01.T01:CDS
AGAGTTTGCTGTGGAAATTC+CGG 0.413761 contig26end:+21543 MsG0080048301.01.T01:CDS
ATTATCTTCATAGTAATTGC+TGG 0.415527 contig26end:+26770 MsG0080048301.01.T01:CDS
TTTGGTATCGGCGCTGTTGT+CGG 0.416973 contig26end:+21406 MsG0080048301.01.T01:CDS
GGCTAAGGAGCATGCAGGTC+CGG 0.426445 contig26end:+21459 MsG0080048301.01.T01:CDS
ATTGATCCAACTAGACCAAT+AGG 0.431013 contig26end:-26947 None:intergenic
TTCACTCCTTTCGGGTTGCA+TGG 0.432881 contig26end:+26827 MsG0080048301.01.T01:CDS
ACTATTATACGAAAATCATC+AGG 0.434415 contig26end:-26608 None:intergenic
TTAGTGCTGTTGGAATGGAT+TGG 0.443178 contig26end:+27068 MsG0080048301.01.T01:CDS
ATCGGCGCTGTTGTCGGCTC+CGG 0.443812 contig26end:+21412 MsG0080048301.01.T01:CDS
GACTTGATGTGGTTTGGTAT+CGG 0.444489 contig26end:+21394 MsG0080048301.01.T01:CDS
TGAAGGATCGTTTGTTGAAA+CGG 0.451718 contig26end:+21296 MsG0080048301.01.T01:CDS
GGAGGAGTCGTTTAAGAGTT+GGG 0.454594 contig26end:+21234 MsG0080048301.01.T01:CDS
GGAAACACCTCTCCGGTTGA+AGG 0.459143 contig26end:+21279 MsG0080048301.01.T01:CDS
CACCAGCTCTGCATGATCAC+TGG 0.459328 contig26end:-21320 None:intergenic
GTGTTGTCGTTTGTCATCTC+CGG 0.461483 contig26end:+21487 MsG0080048301.01.T01:CDS
TCCTTTCGGGTTGCATGGAA+TGG 0.461688 contig26end:+26832 MsG0080048301.01.T01:CDS
CGGAGGAGTCGTTTAAGAGT+TGG 0.463490 contig26end:+21233 MsG0080048301.01.T01:CDS
AAAGGAATGACAACGGTTTG+TGG 0.464118 contig26end:+27121 MsG0080048301.01.T01:CDS
GCAACTGAGAAAGGAGCATC+AGG 0.468881 contig26end:-27043 None:intergenic
GGAGAGGTGGTTGACGGCGG+CGG 0.471520 contig26end:+21163 MsG0080048301.01.T01:CDS
CCTGGTAGAGACATTCCTAT+TGG 0.474972 contig26end:+26932 MsG0080048301.01.T01:CDS
CAACTCTTAAACGACTCCTC+CGG 0.477205 contig26end:-21232 None:intergenic
GCACTAAAAGCAACTGAGAA+AGG 0.478246 contig26end:-27052 None:intergenic
GCGGTTGGAGAGGTGGTTGA+CGG 0.480185 contig26end:+21157 MsG0080048301.01.T01:CDS
TCAACAAACGATCCTTCAAC+CGG 0.481067 contig26end:-21291 None:intergenic
GTTGAAGATGGAAGAGCCTT+TGG 0.481809 contig26end:-26717 None:intergenic
AGATGAAGAAGACACTGAAT+TGG 0.481831 contig26end:+21368 MsG0080048301.01.T01:CDS
TAAGAGAAAGTACCAGCAAC+CGG 0.485484 contig26end:-21562 None:intergenic
GATGTTTCCGGCAGCTATGA+AGG 0.485872 contig26end:-26507 None:intergenic
ATCCTCCTTGAATATGTCAT+AGG 0.488387 contig26end:+26527 MsG0080048301.01.T01:CDS
AACTCTTAAACGACTCCTCC+GGG 0.489247 contig26end:-21231 None:intergenic
ACGCCGCGGTAGCTCGATCA+TGG 0.494424 contig26end:+26552 MsG0080048301.01.T01:CDS
AAACTACGGAAAATCTATCA+TGG 0.496080 contig26end:+21258 MsG0080048301.01.T01:CDS
CCAATAGGAATGTCTCTACC+AGG 0.501633 contig26end:-26932 None:intergenic
CTAGAGCTCCAATAGCAATA+GGG 0.517338 contig26end:-26664 None:intergenic
GTCCAGTGATCATGCAGAGC+TGG 0.525971 contig26end:+21318 MsG0080048301.01.T01:CDS
GCTTACTTGAGAGTAGAAAT+GGG 0.528942 contig26end:+26473 MsG0080048301.01.T01:CDS
TTTGTTGCCTTCATAGCTGC+CGG 0.530560 contig26end:+26500 MsG0080048301.01.T01:CDS
CTTGCAGTTTACAGCACCAA+AGG 0.534562 contig26end:+26701 MsG0080048301.01.T01:CDS
CTATCATGGAAACACCTCTC+CGG 0.545103 contig26end:+21272 MsG0080048301.01.T01:CDS
TGTGGCTATGTAGTTGAAGA+TGG 0.545536 contig26end:-26729 None:intergenic
CGTTGCCTATGACATATTCA+AGG 0.547193 contig26end:-26532 None:intergenic
CAGGAACATGGCGGTTGGAG+AGG 0.548690 contig26end:+21147 None:intergenic
ACAAACGACAACACAACTGC+CGG 0.550560 contig26end:-21478 None:intergenic
TGATAACAAAGCAGATATAC+CGG 0.555679 contig26end:-21506 None:intergenic
CAGTGATCATGCAGAGCTGG+TGG 0.560746 contig26end:+21321 MsG0080048301.01.T01:CDS
GTAAACTGCAAGGGCTGTGA+TGG 0.563586 contig26end:-26690 None:intergenic
CATAGTCAGGGTTCATATTG+TGG 0.563878 contig26end:-26631 None:intergenic
TGAAGAAGACACTGAATTGG+TGG 0.564541 contig26end:+21371 MsG0080048301.01.T01:CDS
CTTTGGTGCTGTAAACTGCA+AGG 0.567605 contig26end:-26700 None:intergenic
GAAAACAGGAACATGGCGGT+TGG 0.569132 contig26end:+21142 None:intergenic
ATTTGTGCTTACCGGACTTG+AGG 0.572133 contig26end:+21438 MsG0080048301.01.T01:CDS
CAATAGCAATAGGGTCAAGA+TGG 0.574940 contig26end:-26655 None:intergenic
GCTTACCGGACTTGAGGCTA+AGG 0.575661 contig26end:+21444 MsG0080048301.01.T01:CDS
TTTAAGAGTTGGGAAAACTA+CGG 0.577286 contig26end:+21244 MsG0080048301.01.T01:CDS
GAACATGGCGGTTGGAGAGG+TGG 0.581100 contig26end:+21150 None:intergenic
TGAATTGGTGGGACTTGATG+TGG 0.581666 contig26end:+21383 MsG0080048301.01.T01:CDS
GTTTCATTAGGTGCTTTGAA+AGG 0.590596 contig26end:+27103 MsG0080048301.01.T01:CDS
GCAGAGGGTGGCAAAATAGG+AGG 0.598124 contig26end:-26576 None:intergenic
ATGCTCCTTAGCCTCAAGTC+CGG 0.602400 contig26end:-21449 None:intergenic
CTTGAGGCTAAGGAGCATGC+AGG 0.604195 contig26end:+21454 MsG0080048301.01.T01:CDS
GGCGGAGGAGTACGTAGAAG+AGG 0.614194 contig26end:+21181 MsG0080048301.01.T01:CDS
GTGGAGATTAAGGCTAGGAG+TGG 0.614966 contig26end:+21340 MsG0080048301.01.T01:CDS
ACCATTCCATGCAACCCGAA+AGG 0.616795 contig26end:-26833 None:intergenic
TTTGGTGCTGTAAACTGCAA+GGG 0.618827 contig26end:-26699 None:intergenic
GGTCAAGATGGCCATAGTCA+GGG 0.621031 contig26end:-26643 None:intergenic
GAAGAAGACACTGAATTGGT+GGG 0.623639 contig26end:+21372 MsG0080048301.01.T01:CDS
GTTGGAGAGGTGGTTGACGG+CGG 0.625310 contig26end:+21160 MsG0080048301.01.T01:CDS
AGCTGGTGGAGATTAAGGCT+AGG 0.626254 contig26end:+21335 MsG0080048301.01.T01:CDS
AATATAAGCAAAGAAAAGAA+CGG 0.627891 contig26end:-26867 None:intergenic
TGCTTTGAAAGGAATGACAA+CGG 0.638848 contig26end:+27114 MsG0080048301.01.T01:CDS
CTATTATACGAAAATCATCA+GGG 0.647038 contig26end:-26607 None:intergenic
CATAGCCACAATGTTCCACA+TGG 0.652539 contig26end:+26742 MsG0080048301.01.T01:CDS
TGGAGATTAAGGCTAGGAGT+GGG 0.659365 contig26end:+21341 MsG0080048301.01.T01:CDS
TTGTTATACAGAGTTTGCTG+TGG 0.663078 contig26end:+21534 MsG0080048301.01.T01:CDS
GGTCCATGATCGAGCTACCG+CGG 0.680216 contig26end:-26555 None:intergenic
GACAGCCATGTGGAACATTG+TGG 0.684798 contig26end:-26747 None:intergenic
CAATAGGAATGTCTCTACCA+GGG 0.688021 contig26end:-26931 None:intergenic
AAACGATCCTTCAACCGGAG+AGG 0.694839 contig26end:-21286 None:intergenic
TGAAGATAATGACAGCCATG+TGG 0.711409 contig26end:-26757 None:intergenic
TGCCTATGACATATTCAAGG+AGG 0.723417 contig26end:-26529 None:intergenic
ATATGTCATAGGCAACGCCG+CGG 0.783643 contig26end:+26538 MsG0080048301.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAAAATATATATATGAT+GGG + contig26end:23831-23850 MsG0080048301.01.T01:intron 10.0%
!! ATAAGAAACATATTAAAAAA+CGG + contig26end:24050-24069 MsG0080048301.01.T01:intron 10.0%
!! ATATTAAAATTGTTTGATTA+TGG - contig26end:24984-25003 None:intergenic 10.0%
!! CTTAAATATTTATTAAAAAG+AGG - contig26end:24688-24707 None:intergenic 10.0%
!! TAATAAAATTCAATAGTTTA+AGG + contig26end:24853-24872 MsG0080048301.01.T01:intron 10.0%
!!! AAAGAATAATTACTAATTTT+AGG - contig26end:24114-24133 None:intergenic 10.0%
!!! ATAATTATTTTTTTTTGAAG+AGG + contig26end:26356-26375 MsG0080048301.01.T01:intron 10.0%
!!! ATAATTTTTGTTATTTTTGA+AGG - contig26end:26271-26290 None:intergenic 10.0%
!!! TGTTGTAAAATTATAAATTT+TGG - contig26end:22197-22216 None:intergenic 10.0%
!! AAAAAAAAAACTACATTTGA+TGG - contig26end:22522-22541 None:intergenic 15.0%
!! AAAACATAAAATTGAAAATG+TGG + contig26end:24828-24847 MsG0080048301.01.T01:intron 15.0%
!! ATTAAAAAAAGCAATTTGAT+GGG + contig26end:24242-24261 MsG0080048301.01.T01:intron 15.0%
!! CACATAAAATATATATATGA+TGG + contig26end:23830-23849 MsG0080048301.01.T01:intron 15.0%
!! GAATATAAAAATACAACAAA+AGG + contig26end:21721-21740 MsG0080048301.01.T01:intron 15.0%
!!! AAAACATTAGTGAAATTTTA+TGG - contig26end:23147-23166 None:intergenic 15.0%
!!! AACTATAAAAATATGGATTA+AGG - contig26end:21917-21936 None:intergenic 15.0%
!!! AATTTAAATTGTTTTTTGAG+AGG - contig26end:24922-24941 None:intergenic 15.0%
!!! ACATATTTTTCTAAATACTT+TGG + contig26end:21963-21982 MsG0080048301.01.T01:intron 15.0%
!!! ATAATTTTACAACATTGTAA+GGG + contig26end:22203-22222 MsG0080048301.01.T01:intron 15.0%
!!! ATCAAATTGCTTTTTTTAAT+GGG - contig26end:24242-24261 None:intergenic 15.0%
!!! ATTTCTTTTAAAAAATGAAG+AGG - contig26end:25600-25619 None:intergenic 15.0%
!!! TATAATTTTACAACATTGTA+AGG + contig26end:22202-22221 MsG0080048301.01.T01:intron 15.0%
!!! TTGTAGTTATCTTTTTATTA+TGG + contig26end:23165-23184 MsG0080048301.01.T01:intron 15.0%
!!! TTTCTTTTAAAAAATGAAGA+GGG - contig26end:25599-25618 None:intergenic 15.0%
!!! TTTTCAAAAAAAACTGTTTT+TGG - contig26end:25015-25034 None:intergenic 15.0%
!! AATATAAGCAAAGAAAAGAA+CGG - contig26end:26870-26889 None:intergenic 20.0%
!! ACTTGTAAAAAAAATGAAGT+TGG - contig26end:23036-23055 None:intergenic 20.0%
!! AGTTTACAAAATTTATTGCT+AGG - contig26end:22027-22046 None:intergenic 20.0%
!! ATTCTTATAAAAGACTAATG+TGG + contig26end:22728-22747 MsG0080048301.01.T01:intron 20.0%
!! CATTAAAAAAAGCAATTTGA+TGG + contig26end:24241-24260 MsG0080048301.01.T01:intron 20.0%
!! TAAAACTGAAATATTAGTTG+TGG - contig26end:24616-24635 None:intergenic 20.0%
!! TACTCATAATAAATTGCTAA+AGG + contig26end:26228-26247 MsG0080048301.01.T01:intron 20.0%
!! TCCTATGAACTATAAAAATA+TGG - contig26end:21924-21943 None:intergenic 20.0%
!! TGTCAAAAGTTGTTAAAAAA+TGG - contig26end:26068-26087 None:intergenic 20.0%
!! TTAAAAAAAGCAATTTGATG+GGG + contig26end:24243-24262 MsG0080048301.01.T01:intron 20.0%
!!! AAGTTTACTAAATTTTACTC+CGG + contig26end:21841-21860 MsG0080048301.01.T01:intron 20.0%
!!! AATAGAAGTAGAAGTATAAA+TGG - contig26end:25930-25949 None:intergenic 20.0%
!!! AATGTAGTTTTTTTTTTGTC+AGG + contig26end:22525-22544 MsG0080048301.01.T01:intron 20.0%
!!! ATCAAAACAACTAAACTTTT+CGG + contig26end:21754-21773 MsG0080048301.01.T01:intron 20.0%
!!! ATTAATTGTGTTGGTTTAAT+AGG - contig26end:22064-22083 None:intergenic 20.0%
!!! ATTTTTAAAAGTAGAGAAGT+GGG - contig26end:22933-22952 None:intergenic 20.0%
!!! CATCAAATTGCTTTTTTTAA+TGG - contig26end:24243-24262 None:intergenic 20.0%
!!! TAATTTTACAACATTGTAAG+GGG + contig26end:22204-22223 MsG0080048301.01.T01:intron 20.0%
!!! TCCATATTTTTATAGTTCAT+AGG + contig26end:21920-21939 MsG0080048301.01.T01:intron 20.0%
!!! TCTATCATAGTATTGTTATT+TGG + contig26end:25836-25855 MsG0080048301.01.T01:intron 20.0%
!!! TTAATTGTGTTGGTTTAATA+GGG - contig26end:22063-22082 None:intergenic 20.0%
!!! TTGTTTTTCTTTCATTTGAT+TGG - contig26end:26167-26186 None:intergenic 20.0%
!!! TTTATTTTGAGTGGATATTT+GGG - contig26end:22171-22190 None:intergenic 20.0%
!!! TTTTAATATTCCATCTAGAA+TGG - contig26end:22466-22485 None:intergenic 20.0%
!!! TTTTTCTCAGCAATTAAATT+AGG + contig26end:22826-22845 MsG0080048301.01.T01:intron 20.0%
!!! TTTTTTTGACAAGATTTTCT+TGG + contig26end:23511-23530 MsG0080048301.01.T01:intron 20.0%
! AAAAAGAACTAAGAAAGAGA+CGG + contig26end:25102-25121 MsG0080048301.01.T01:intron 25.0%
! AAACATATTAAAAAACGGTC+TGG + contig26end:24055-24074 MsG0080048301.01.T01:intron 25.0%
! ACAGAAATCATTAATTGTGT+TGG - contig26end:22073-22092 None:intergenic 25.0%
! ACTATTATACGAAAATCATC+AGG - contig26end:26611-26630 None:intergenic 25.0%
! ACTTAAAACGACAACTAAAA+AGG + contig26end:26316-26335 MsG0080048301.01.T01:intron 25.0%
! ATAAGAATTATCAACACATG+CGG - contig26end:22716-22735 None:intergenic 25.0%
! ATGAAAGGAGATATTAAGAA+AGG - contig26end:24590-24609 None:intergenic 25.0%
! ATTATCTTCATAGTAATTGC+TGG + contig26end:26770-26789 MsG0080048301.01.T01:CDS 25.0%
! CAACAAATTCTTAATAACTC+CGG + contig26end:23060-23079 MsG0080048301.01.T01:intron 25.0%
! CTAAATGTTCAAATAGTTTG+AGG + contig26end:25549-25568 MsG0080048301.01.T01:intron 25.0%
! CTATTATACGAAAATCATCA+GGG - contig26end:26610-26629 None:intergenic 25.0%
! GAAGTTATTATTTGTTTGTG+TGG - contig26end:23413-23432 None:intergenic 25.0%
! TAAAAAAAGCAATTTGATGG+GGG + contig26end:24244-24263 MsG0080048301.01.T01:intron 25.0%
! TATTAGTTGTGGTTAATGAA+AGG - contig26end:24605-24624 None:intergenic 25.0%
! TGAAAGGAGATATTAAGAAA+GGG - contig26end:24589-24608 None:intergenic 25.0%
! TGTCTGTATTATCTTTACTT+GGG - contig26end:25083-25102 None:intergenic 25.0%
! TTGTCTGTATTATCTTTACT+TGG - contig26end:25084-25103 None:intergenic 25.0%
!! AATCTTTCATCTATTTGTTG+TGG + contig26end:23103-23122 MsG0080048301.01.T01:intron 25.0%
!! ACTATTTTGCCAATTTTTCT+TGG - contig26end:23283-23302 None:intergenic 25.0%
!! AGTGATATTTGTACAACTTT+TGG - contig26end:26209-26228 None:intergenic 25.0%
!! ATTCTTATTTGTTGAATACG+TGG - contig26end:23801-23820 None:intergenic 25.0%
!! ATTTGAACCTATTGCAATTT+TGG - contig26end:25205-25224 None:intergenic 25.0%
!! CTATAGAAACATTTTATAGC+CGG - contig26end:21863-21882 None:intergenic 25.0%
!! GTTCTTTTCTTTGCTTATAT+TGG + contig26end:26869-26888 MsG0080048301.01.T01:CDS 25.0%
!! TAAAACCTTCAAGTGTTATT+AGG + contig26end:24418-24437 MsG0080048301.01.T01:intron 25.0%
!! TCTAATGATAATGTAGCAAA+TGG + contig26end:25621-25640 MsG0080048301.01.T01:intron 25.0%
!! TGACAATAAGAAACTTTTAC+CGG + contig26end:21661-21680 MsG0080048301.01.T01:intron 25.0%
!! TTCTTATTTGTTGAATACGT+GGG - contig26end:23800-23819 None:intergenic 25.0%
!!! ATATTTTGGCTTTGTTTACT+CGG - contig26end:23975-23994 None:intergenic 25.0%
!!! CAGTCTTTAATTTTACAAGT+CGG - contig26end:23216-23235 None:intergenic 25.0%
!!! CATTTTTAAAAGTAGAGAAG+TGG - contig26end:22934-22953 None:intergenic 25.0%
!!! CTTTAAGAGTATCTTTACAT+TGG + contig26end:23331-23350 MsG0080048301.01.T01:intron 25.0%
!!! CTTTATTTTGAGTGGATATT+TGG - contig26end:22172-22191 None:intergenic 25.0%
!!! TAGCAGTTTGATTTTGATAT+TGG + contig26end:26402-26421 MsG0080048301.01.T01:intron 25.0%
!!! TTTTAAAGGAATTCCACATT+TGG - contig26end:22771-22790 None:intergenic 25.0%
AAAAAAAGCAATTTGATGGG+GGG + contig26end:24245-24264 MsG0080048301.01.T01:intron 30.0%
AAACGACTCTTATCTTAAGA+CGG + contig26end:22431-22450 MsG0080048301.01.T01:intron 30.0%
AAACTACGGAAAATCTATCA+TGG + contig26end:21258-21277 MsG0080048301.01.T01:CDS 30.0%
AAAGACTGACAAAATTGTCA+AGG + contig26end:23228-23247 MsG0080048301.01.T01:intron 30.0%
AATACTACTACCAATTCCTT+TGG - contig26end:25651-25670 None:intergenic 30.0%
AATGTCCTAATAACACTTGA+AGG - contig26end:24426-24445 None:intergenic 30.0%
AGACAATTATTTCAAGACGA+AGG - contig26end:22311-22330 None:intergenic 30.0%
AGATGAAAGATTAAAAACGC+AGG - contig26end:23095-23114 None:intergenic 30.0%
ATACACGAGTTTGAAGAAAA+TGG + contig26end:23590-23609 MsG0080048301.01.T01:intron 30.0%
CATTAGAAGACAAATGCAAA+AGG + contig26end:23912-23931 MsG0080048301.01.T01:intron 30.0%
CGGAGTTATTAAGAATTTGT+TGG - contig26end:23062-23081 None:intergenic 30.0%
GACAATTATTTCAAGACGAA+GGG - contig26end:22310-22329 None:intergenic 30.0%
GTCTGTATTATCTTTACTTG+GGG - contig26end:25082-25101 None:intergenic 30.0%
GTGATTTAAAAAACATCGTG+AGG + contig26end:23877-23896 MsG0080048301.01.T01:intron 30.0%
GTTCAAATAGTTTGAGGATT+AGG + contig26end:25555-25574 MsG0080048301.01.T01:intron 30.0%
TAAAAAACATCGTGAGGAAA+AGG + contig26end:23883-23902 MsG0080048301.01.T01:intron 30.0%
TAGAGAGAGAGGAAAAAAAA+AGG - contig26end:26134-26153 None:intergenic 30.0%
TCTGTATTATCTTTACTTGG+GGG - contig26end:25081-25100 None:intergenic 30.0%
TGATAACAAAGCAGATATAC+CGG - contig26end:21509-21528 None:intergenic 30.0%
TTATATCTACTTCGAGTAAC+CGG - contig26end:21683-21702 None:intergenic 30.0%
TTATCAGGGATAATAAGTAC+AGG - contig26end:22620-22639 None:intergenic 30.0%
TTCCTCTAATAGTAATAGAC+AGG + contig26end:23674-23693 MsG0080048301.01.T01:intron 30.0%
TTGCTAGGATTAACAATACT+TGG - contig26end:22012-22031 None:intergenic 30.0%
TTTAAGAGTTGGGAAAACTA+CGG + contig26end:21244-21263 MsG0080048301.01.T01:CDS 30.0%
! AGTGAAGTCATTGAAGTTTT+CGG - contig26end:26813-26832 None:intergenic 30.0%
! AGTTTGAGGATTAGGATTTT+TGG + contig26end:25563-25582 MsG0080048301.01.T01:intron 30.0%
! TAATTTTACAAGTCGGAGAA+AGG - contig26end:23209-23228 None:intergenic 30.0%
! TACCAAATGAGTTTAGCTTA+GGG - contig26end:22854-22873 None:intergenic 30.0%
!! GTTGATTTCAACGTTTTTGA+GGG - contig26end:23761-23780 None:intergenic 30.0%
!! TGAGTTGATAATTCCAAATG+TGG + contig26end:22755-22774 MsG0080048301.01.T01:intron 30.0%
!!! TTTTGGTGCTTTATTTTGAG+TGG - contig26end:22180-22199 None:intergenic 30.0%
AAAGTCTTGGAGAAGTCAAA+AGG - contig26end:22266-22285 None:intergenic 35.0%
AAATGGAGAACCAAAGGAAT+TGG + contig26end:25638-25657 MsG0080048301.01.T01:intron 35.0%
AACGTCACCAAAATTGCAAT+AGG + contig26end:25195-25214 MsG0080048301.01.T01:intron 35.0%
ACAATATGACTGATGAATGG+AGG - contig26end:23389-23408 None:intergenic 35.0%
ACTATGATAGAAAACCCACT+TGG - contig26end:25827-25846 None:intergenic 35.0%
AGATGAAGAAGACACTGAAT+TGG + contig26end:21368-21387 MsG0080048301.01.T01:CDS 35.0%
AGGTTGACAAAGAATGACTA+TGG - contig26end:23705-23724 None:intergenic 35.0%
ATATGAGCACCAGCTAAATA+TGG + contig26end:25051-25070 MsG0080048301.01.T01:intron 35.0%
ATATTCAAGGAGGATGTTTC+CGG - contig26end:26522-26541 None:intergenic 35.0%
ATCCTCCTTGAATATGTCAT+AGG + contig26end:26527-26546 MsG0080048301.01.T01:CDS 35.0%
ATTGATCCAACTAGACCAAT+AGG - contig26end:26950-26969 None:intergenic 35.0%
CTATGATAGAAAACCCACTT+GGG - contig26end:25826-25845 None:intergenic 35.0%
CTGTATTATCTTTACTTGGG+GGG - contig26end:25080-25099 None:intergenic 35.0%
CTTTGATGCAGTTTCAACTA+TGG + contig26end:26892-26911 MsG0080048301.01.T01:CDS 35.0%
GATTCAGTGCCAAGAAAAAT+TGG + contig26end:23271-23290 MsG0080048301.01.T01:intron 35.0%
GCTAAGTACATCGTTTCATT+AGG + contig26end:27091-27110 MsG0080048301.01.T01:CDS 35.0%
GCTTACTTGAGAGTAGAAAT+GGG + contig26end:26473-26492 MsG0080048301.01.T01:CDS 35.0%
GGTACAATATGACTGATGAA+TGG - contig26end:23392-23411 None:intergenic 35.0%
GGTTGACAAAGAATGACTAT+GGG - contig26end:23704-23723 None:intergenic 35.0%
GTCAAAAACAATAGAGAGAG+AGG - contig26end:26145-26164 None:intergenic 35.0%
GTTGACAAAGAATGACTATG+GGG - contig26end:23703-23722 None:intergenic 35.0%
TATCAACTGAGCTACACTTA+CGG + contig26end:22641-22660 MsG0080048301.01.T01:intron 35.0%
TGCTTACTTGAGAGTAGAAA+TGG + contig26end:26472-26491 MsG0080048301.01.T01:CDS 35.0%
TTCAATGACTTCACTCCTTT+CGG + contig26end:26818-26837 MsG0080048301.01.T01:CDS 35.0%
TTCCCTAAGCTAAACTCATT+TGG + contig26end:22849-22868 MsG0080048301.01.T01:intron 35.0%
TTGACAAAGAATGACTATGG+GGG - contig26end:23702-23721 None:intergenic 35.0%
! ATCATCTTTGTTGTGTGAAC+AGG - contig26end:23725-23744 None:intergenic 35.0%
! CACTTTTCACTCTCTTATTC+AGG + contig26end:26440-26459 MsG0080048301.01.T01:intron 35.0%
! CTACCAAATGAGTTTAGCTT+AGG - contig26end:22855-22874 None:intergenic 35.0%
! GCAATTTTTCCAAAGACCAA+TGG + contig26end:25268-25287 MsG0080048301.01.T01:intron 35.0%
! GTCATTGAAGTTTTCGGTTT+TGG - contig26end:26807-26826 None:intergenic 35.0%
! GTTTCATTAGGTGCTTTGAA+AGG + contig26end:27103-27122 MsG0080048301.01.T01:CDS 35.0%
! TGAAGGATCGTTTGTTGAAA+CGG + contig26end:21296-21315 MsG0080048301.01.T01:CDS 35.0%
! TTGGTCTTTGGAAAAATTGC+CGG - contig26end:25268-25287 None:intergenic 35.0%
! TTTTCACTCTCTTATTCAGG+TGG + contig26end:26443-26462 MsG0080048301.01.T01:intron 35.0%
!! AGCTCAGTTGATAGTTATCA+GGG - contig26end:22634-22653 None:intergenic 35.0%
!! AGTGTTTCTGAATTTTTCGC+TGG + contig26end:24271-24290 MsG0080048301.01.T01:intron 35.0%
!! ATGAGATAGAGAGAGTACTA+CGG + contig26end:22130-22149 MsG0080048301.01.T01:intron 35.0%
!! CAAGAGTTTTGATGTCTATG+AGG + contig26end:25865-25884 MsG0080048301.01.T01:intron 35.0%
!! GGTTGATTTCAACGTTTTTG+AGG - contig26end:23762-23781 None:intergenic 35.0%
!! TAGCTCAGTTGATAGTTATC+AGG - contig26end:22635-22654 None:intergenic 35.0%
!! TGCTTTGAAAGGAATGACAA+CGG + contig26end:27114-27133 MsG0080048301.01.T01:CDS 35.0%
!! TTGTTATACAGAGTTTGCTG+TGG + contig26end:21534-21553 MsG0080048301.01.T01:CDS 35.0%
!!! CTCTTTTTAGTCTTACGTCA+AGG + contig26end:24550-24569 MsG0080048301.01.T01:intron 35.0%
!!! TTCTCACGCTAGATTTTTTC+TGG + contig26end:23430-23449 MsG0080048301.01.T01:intron 35.0%
AAAGGAATGACAACGGTTTG+TGG + contig26end:27121-27140 MsG0080048301.01.T01:CDS 40.0%
AAAGTTAACGAGTGCCTTCA+AGG - contig26end:24218-24237 None:intergenic 40.0%
ACATTTAGCAGTGCAGTACT+AGG - contig26end:25537-25556 None:intergenic 40.0%
ACTAGAGCTCCAATAGCAAT+AGG - contig26end:26668-26687 None:intergenic 40.0%
ACTGATGAATGGAGGAATCT+TGG - contig26end:23381-23400 None:intergenic 40.0%
AGATTCACACGCATTATGTG+TGG + contig26end:22561-22580 MsG0080048301.01.T01:intron 40.0%
AGTCGGAGAAAGGAATTAAC+AGG - contig26end:23199-23218 None:intergenic 40.0%
ATCAACTGAGCTACACTTAC+GGG + contig26end:22642-22661 MsG0080048301.01.T01:intron 40.0%
CAAAGACCAATGGTGTCTTT+GGG + contig26end:25278-25297 MsG0080048301.01.T01:intron 40.0%
CAATAGCAATAGGGTCAAGA+TGG - contig26end:26658-26677 None:intergenic 40.0%
CAATAGGAATGTCTCTACCA+GGG - contig26end:26934-26953 None:intergenic 40.0%
CACAATATGAACCCTGACTA+TGG + contig26end:26632-26651 MsG0080048301.01.T01:CDS 40.0%
CATAGTCAGGGTTCATATTG+TGG - contig26end:26634-26653 None:intergenic 40.0%
CATCTTGACCCTATTGCTAT+TGG + contig26end:26656-26675 MsG0080048301.01.T01:CDS 40.0%
CGAATAAGATTGATCTCGAG+TGG + contig26end:21782-21801 MsG0080048301.01.T01:intron 40.0%
CGCCTGTCTATTACTATTAG+AGG - contig26end:23679-23698 None:intergenic 40.0%
CGTAAAATATCCATGTTGCC+AGG + contig26end:25232-25251 MsG0080048301.01.T01:intron 40.0%
CGTTGCCTATGACATATTCA+AGG - contig26end:26535-26554 None:intergenic 40.0%
CTAAATAGCCCACCCTAAAT+TGG + contig26end:25726-25745 MsG0080048301.01.T01:intron 40.0%
CTAGAGCTCCAATAGCAATA+GGG - contig26end:26667-26686 None:intergenic 40.0%
GAAGAAGACACTGAATTGGT+GGG + contig26end:21372-21391 MsG0080048301.01.T01:CDS 40.0%
GACTCTTATCTTAAGACGGA+TGG + contig26end:22435-22454 MsG0080048301.01.T01:intron 40.0%
GATAATAAGTACAGGAGTCG+GGG - contig26end:22612-22631 None:intergenic 40.0%
GCACTAAAAGCAACTGAGAA+AGG - contig26end:27055-27074 None:intergenic 40.0%
GCTGAAGAAACTAAAAACCC+TGG + contig26end:26914-26933 MsG0080048301.01.T01:CDS 40.0%
GGATAATAAGTACAGGAGTC+GGG - contig26end:22613-22632 None:intergenic 40.0%
GGGATAATAAGTACAGGAGT+CGG - contig26end:22614-22633 None:intergenic 40.0%
TCAACAAACGATCCTTCAAC+CGG - contig26end:21294-21313 None:intergenic 40.0%
TCAATGACTTCACTCCTTTC+GGG + contig26end:26819-26838 MsG0080048301.01.T01:CDS 40.0%
TCAGAAAAACGACTTCTTCC+CGG + contig26end:21213-21232 MsG0080048301.01.T01:CDS 40.0%
TCCGGAATATTTGTGCTTAC+CGG + contig26end:21430-21449 MsG0080048301.01.T01:CDS 40.0%
TCCGGTAAGCACAAATATTC+CGG - contig26end:21434-21453 None:intergenic 40.0%
TCTTATCTTAAGACGGATGG+AGG + contig26end:22438-22457 MsG0080048301.01.T01:intron 40.0%
TCTTGGAGAAGTCAAAAGGT+AGG - contig26end:22262-22281 None:intergenic 40.0%
TGAAGAAGACACTGAATTGG+TGG + contig26end:21371-21390 MsG0080048301.01.T01:CDS 40.0%
TGAAGATAATGACAGCCATG+TGG - contig26end:26760-26779 None:intergenic 40.0%
TGCCTATGACATATTCAAGG+AGG - contig26end:26532-26551 None:intergenic 40.0%
TGTAGCAAATGGAGAACCAA+AGG + contig26end:25632-25651 MsG0080048301.01.T01:intron 40.0%
TGTGGCTATGTAGTTGAAGA+TGG - contig26end:26732-26751 None:intergenic 40.0%
! ATCAGGGTTTTTGTTGCAGA+GGG - contig26end:26594-26613 None:intergenic 40.0%
! GACATTCCTATTGGTCTAGT+TGG + contig26end:26941-26960 MsG0080048301.01.T01:CDS 40.0%
! TAGTGCTGTTGGAATGGATT+GGG + contig26end:27069-27088 MsG0080048301.01.T01:CDS 40.0%
! TTAGTGCTGTTGGAATGGAT+TGG + contig26end:27068-27087 MsG0080048301.01.T01:CDS 40.0%
!! AGAGTTTGCTGTGGAAATTC+CGG + contig26end:21543-21562 MsG0080048301.01.T01:CDS 40.0%
!! AGGATGCTTAAAGAGTATCC+CGG - contig26end:24094-24113 None:intergenic 40.0%
!! ATGGTATTGACTTGGGTCAT+GGG - contig26end:25795-25814 None:intergenic 40.0%
!! GACTTGATGTGGTTTGGTAT+CGG + contig26end:21394-21413 MsG0080048301.01.T01:CDS 40.0%
!! TAAGAGAAAGTACCAGCAAC+CGG - contig26end:21565-21584 None:intergenic 40.0%
!! TGCTTTTAGTGCTGTTGGAA+TGG + contig26end:27063-27082 MsG0080048301.01.T01:CDS 40.0%
!! TTTGGTGCTGTAAACTGCAA+GGG - contig26end:26702-26721 None:intergenic 40.0%
!!! TCAGTTGCTTTTAGTGCTGT+TGG + contig26end:27058-27077 MsG0080048301.01.T01:CDS 40.0%
!!! TTTTTTGTCAGGTAGCCTAG+TGG + contig26end:22536-22555 MsG0080048301.01.T01:intron 40.0%
AAAACGCAGGCACTAGAATC+CGG - contig26end:23082-23101 None:intergenic 45.0%
AACTCTTAAACGACTCCTCC+GGG - contig26end:21234-21253 None:intergenic 45.0%
AAGTAGAGAAGTGGGATGTC+TGG - contig26end:22925-22944 None:intergenic 45.0%
ACAAACGACAACACAACTGC+CGG - contig26end:21481-21500 None:intergenic 45.0%
ACGCATTATGTGTGGAGAAG+TGG + contig26end:22569-22588 MsG0080048301.01.T01:intron 45.0%
ACTAGGACTTAGGGTGTGTT+TGG - contig26end:25520-25539 None:intergenic 45.0%
ATTTGTGCTTACCGGACTTG+AGG + contig26end:21438-21457 MsG0080048301.01.T01:CDS 45.0%
CAACTCTTAAACGACTCCTC+CGG - contig26end:21235-21254 None:intergenic 45.0%
CAGTGCAGTACTAGGACTTA+GGG - contig26end:25529-25548 None:intergenic 45.0%
CATAGCCACAATGTTCCACA+TGG + contig26end:26742-26761 MsG0080048301.01.T01:CDS 45.0%
CATTATGTGTGGAGAAGTGG+GGG + contig26end:22572-22591 MsG0080048301.01.T01:intron 45.0%
CCAAAGACCAATGGTGTCTT+TGG + contig26end:25277-25296 MsG0080048301.01.T01:intron 45.0%
CCAATAGGAATGTCTCTACC+AGG - contig26end:26935-26954 None:intergenic 45.0%
CCTGGTAGAGACATTCCTAT+TGG + contig26end:26932-26951 MsG0080048301.01.T01:CDS 45.0%
CGAAGGGAGTAATATGCATG+AGG - contig26end:22294-22313 None:intergenic 45.0%
CGCATTATGTGTGGAGAAGT+GGG + contig26end:22570-22589 MsG0080048301.01.T01:intron 45.0%
CGTGGGCAATTTCATCTGTA+TGG - contig26end:23783-23802 None:intergenic 45.0%
CTAGGACTTAGGGTGTGTTT+GGG - contig26end:25519-25538 None:intergenic 45.0%
CTATCATGGAAACACCTCTC+CGG + contig26end:21272-21291 MsG0080048301.01.T01:CDS 45.0%
CTTGCAGTTTACAGCACCAA+AGG + contig26end:26701-26720 MsG0080048301.01.T01:CDS 45.0%
GATAGAAAACCCACTTGGGT+TGG - contig26end:25822-25841 None:intergenic 45.0%
GATGGAGGAACCATTCTAGA+TGG + contig26end:22453-22472 MsG0080048301.01.T01:intron 45.0%
GATTGATCTCGAGTGGTTAG+TGG + contig26end:21789-21808 MsG0080048301.01.T01:intron 45.0%
GCATGAGGTTGTCAAAGTCT+TGG - contig26end:22279-22298 None:intergenic 45.0%
GCATGGAATGGTCAGTTCTT+CGG + contig26end:26844-26863 MsG0080048301.01.T01:CDS 45.0%
GCATTATGTGTGGAGAAGTG+GGG + contig26end:22571-22590 MsG0080048301.01.T01:intron 45.0%
GGAGGAGTCGTTTAAGAGTT+GGG + contig26end:21234-21253 MsG0080048301.01.T01:CDS 45.0%
GTTGAAGATGGAAGAGCCTT+TGG - contig26end:26720-26739 None:intergenic 45.0%
TGAATTGGTGGGACTTGATG+TGG + contig26end:21383-21402 MsG0080048301.01.T01:CDS 45.0%
TGACAACGGTTTGTGGTTAG+TGG + contig26end:27128-27147 MsG0080048301.01.T01:CDS 45.0%
TGACCCAAGTCAATACCATC+AGG + contig26end:25796-25815 MsG0080048301.01.T01:intron 45.0%
TGAGCACCAGCTAAATATGG+TGG + contig26end:25054-25073 MsG0080048301.01.T01:intron 45.0%
TGGAGATTAAGGCTAGGAGT+GGG + contig26end:21341-21360 MsG0080048301.01.T01:CDS 45.0%
TGTGTTTGGGAAGAGGGTTT+AGG - contig26end:25506-25525 None:intergenic 45.0%
TTAGGGTGTGTTTGGGAAGA+GGG - contig26end:25512-25531 None:intergenic 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG + contig26end:25295-25314 MsG0080048301.01.T01:intron 45.0%
TTTGGGAAGAGGGTTTAGGA+GGG - contig26end:25314-25295 None:intergenic 45.0%
TTTGTTGCCTTCATAGCTGC+CGG + contig26end:26500-26519 MsG0080048301.01.T01:CDS 45.0%
! ATTCTCTCCGGTGCCAATTT+AGG - contig26end:25742-25761 None:intergenic 45.0%
! CAATGGTGTCTTTGGGAAGA+GGG + contig26end:25285-25304 MsG0080048301.01.T01:intron 45.0%
! CATCAGGGTTTTTGTTGCAG+AGG - contig26end:26595-26614 None:intergenic 45.0%
! GTGTTGTCGTTTGTCATCTC+CGG + contig26end:21487-21506 MsG0080048301.01.T01:CDS 45.0%
! TGTCTTTGGGAAGAGGGTTT+AGG + contig26end:25291-25310 MsG0080048301.01.T01:intron 45.0%
! TTCTCTCCGGTGCCAATTTA+GGG - contig26end:25741-25760 None:intergenic 45.0%
!! ATGCTTAAAGAGTATCCCGG+AGG - contig26end:24091-24110 None:intergenic 45.0%
!! CCAAAGACACCATTGGTCTT+TGG - contig26end:25280-25299 None:intergenic 45.0%
!! CTTTGGTGCTGTAAACTGCA+AGG - contig26end:26703-26722 None:intergenic 45.0%
!! GATGGTATTGACTTGGGTCA+TGG - contig26end:25796-25815 None:intergenic 45.0%
!! GTGCTTAAAGAGTGCCTTGA+AGG + contig26end:24201-24220 MsG0080048301.01.T01:intron 45.0%
!! TGGCCTGATGGTATTGACTT+GGG - contig26end:25802-25821 None:intergenic 45.0%
!! TTGGCCTGATGGTATTGACT+TGG - contig26end:25803-25822 None:intergenic 45.0%
!! TTAAATATTTATTAAAAAGA+GGG - contig26end:24687-24706 None:intergenic 5.0%
!!! AAATATAATTCTTTATATTT+TGG - contig26end:23989-24008 None:intergenic 5.0%
!!! GAATTTTTTTTTTTTTTTAA+AGG - contig26end:22785-22804 None:intergenic 5.0%
AAACGATCCTTCAACCGGAG+AGG - contig26end:21289-21308 None:intergenic 50.0%
AAGAGGGTTTAGGAGGGGAA+GGG - contig26end:25496-25515 None:intergenic 50.0%
ACCATTCCATGCAACCCGAA+AGG - contig26end:26836-26855 None:intergenic 50.0%
AGCTGGTGGAGATTAAGGCT+AGG + contig26end:21335-21354 MsG0080048301.01.T01:CDS 50.0%
ATATGTCATAGGCAACGCCG+CGG + contig26end:26538-26557 MsG0080048301.01.T01:CDS 50.0%
ATGCTCCTTAGCCTCAAGTC+CGG - contig26end:21452-21471 None:intergenic 50.0%
CCTCTTCCCAAAGACACCAT+TGG - contig26end:25287-25306 None:intergenic 50.0%
CGGAGGAGTCGTTTAAGAGT+TGG + contig26end:21233-21252 MsG0080048301.01.T01:CDS 50.0%
CTTAGGGTGTGTTTGGGAAG+AGG - contig26end:25513-25532 None:intergenic 50.0%
GAAAAACGACTTCTTCCCGG+AGG + contig26end:21216-21235 MsG0080048301.01.T01:CDS 50.0%
GAAAAATTGCCGGCAGAGAG+GGG - contig26end:25258-25277 None:intergenic 50.0%
GACAGCCATGTGGAACATTG+TGG - contig26end:26750-26769 None:intergenic 50.0%
GATGTTTCCGGCAGCTATGA+AGG - contig26end:26510-26529 None:intergenic 50.0%
GCAGTGCAGTACTAGGACTT+AGG - contig26end:25530-25549 None:intergenic 50.0%
GGAAAAATTGCCGGCAGAGA+GGG - contig26end:25259-25278 None:intergenic 50.0%
GGTCAAGATGGCCATAGTCA+GGG - contig26end:26646-26665 None:intergenic 50.0%
GTAAACTGCAAGGGCTGTGA+TGG - contig26end:26693-26712 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCTC+CGG - contig26end:25754-25773 None:intergenic 50.0%
GTGGAGATTAAGGCTAGGAG+TGG + contig26end:21340-21359 MsG0080048301.01.T01:CDS 50.0%
GTTGCAGAGGGTGGCAAAAT+AGG - contig26end:26582-26601 None:intergenic 50.0%
GTTTGGGAAGAGGGTTTAGG+AGG - contig26end:25503-25522 None:intergenic 50.0%
TCGAACCTGAGACCTTGTAG+AGG + contig26end:25761-25780 MsG0080048301.01.T01:intron 50.0%
TGCAGAGCTGGTGGAGATTA+AGG + contig26end:21330-21349 MsG0080048301.01.T01:CDS 50.0%
TGCGTGTGAATCTAGCCACT+AGG - contig26end:22554-22573 None:intergenic 50.0%
TGGAAAAATTGCCGGCAGAG+AGG - contig26end:25260-25279 None:intergenic 50.0%
TGGTGGGACTTGATGTGGTT+TGG + contig26end:21388-21407 MsG0080048301.01.T01:CDS 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG + contig26end:25296-25315 MsG0080048301.01.T01:intron 50.0%
TTGGGAAGAGGGTTTAGGAG+GGG - contig26end:25315-25296 None:intergenic 50.0%
! AGGGTTTTTGTTGCAGAGGG+TGG - contig26end:26591-26610 None:intergenic 50.0%
! CCAATGGTGTCTTTGGGAAG+AGG + contig26end:25284-25303 MsG0080048301.01.T01:intron 50.0%
! CTTTGGGAAGAGGGTTTAGG+AGG + contig26end:25294-25313 MsG0080048301.01.T01:intron 50.0%
!! GCAACTGAGAAAGGAGCATC+AGG - contig26end:27046-27065 None:intergenic 50.0%
!! TCCTTTCGGGTTGCATGGAA+TGG + contig26end:26832-26851 MsG0080048301.01.T01:CDS 50.0%
!! TTCACTCCTTTCGGGTTGCA+TGG + contig26end:26827-26846 MsG0080048301.01.T01:CDS 50.0%
!! TTTGGTATCGGCGCTGTTGT+CGG + contig26end:21406-21425 MsG0080048301.01.T01:CDS 50.0%
AAGAGGGTTTAGGAGGGGAG+GGG + contig26end:25301-25320 MsG0080048301.01.T01:intron 55.0%
ACCATCAGGCCAACCCAAGT+GGG + contig26end:25810-25829 MsG0080048301.01.T01:intron 55.0%
AGCCCACCCTAAATTGGCAC+CGG + contig26end:25732-25751 MsG0080048301.01.T01:intron 55.0%
AGGAGTCGGGGTTCGAATCT+CGG - contig26end:22600-22619 None:intergenic 55.0%
CACCAGCTCTGCATGATCAC+TGG - contig26end:21323-21342 None:intergenic 55.0%
CAGTGATCATGCAGAGCTGG+TGG + contig26end:21321-21340 MsG0080048301.01.T01:CDS 55.0%
GAAGAGGGTTTAGGAGGGGA+AGG - contig26end:25319-25300 None:intergenic 55.0%
GAAGAGGGTTTAGGAGGGGA+GGG + contig26end:25300-25319 MsG0080048301.01.T01:intron 55.0%
GCAGAGGGTGGCAAAATAGG+AGG - contig26end:26579-26598 None:intergenic 55.0%
GCTGTGGAAATTCCGGTTGC+TGG + contig26end:21550-21569 MsG0080048301.01.T01:CDS 55.0%
GCTTACCGGACTTGAGGCTA+AGG + contig26end:21444-21463 MsG0080048301.01.T01:CDS 55.0%
GGAAACACCTCTCCGGTTGA+AGG + contig26end:21279-21298 MsG0080048301.01.T01:CDS 55.0%
GGGTCAAGATGGCCATAGTC+AGG - contig26end:26647-26666 None:intergenic 55.0%
GTCCAGTGATCATGCAGAGC+TGG + contig26end:21318-21337 MsG0080048301.01.T01:CDS 55.0%
GTCTGGTTAACGAGTGCCTC+CGG + contig26end:24072-24091 MsG0080048301.01.T01:intron 55.0%
GTGCTCCTCTACAAGGTCTC+AGG - contig26end:25769-25788 None:intergenic 55.0%
TACCATCAGGCCAACCCAAG+TGG + contig26end:25809-25828 MsG0080048301.01.T01:intron 55.0%
TCTGGTTAACGAGTGCCTCC+GGG + contig26end:24073-24092 MsG0080048301.01.T01:intron 55.0%
! CTCCGGTGCCAATTTAGGGT+GGG - contig26end:25737-25756 None:intergenic 55.0%
! CTTGAGGCTAAGGAGCATGC+AGG + contig26end:21454-21473 MsG0080048301.01.T01:CDS 55.0%
! TCTCCGGTGCCAATTTAGGG+TGG - contig26end:25738-25757 None:intergenic 55.0%
! TGGGAGTGTGCTCCTCTACA+AGG - contig26end:25776-25795 None:intergenic 55.0%
AGGGTTTAGGAGGGGAAGGG+AGG - contig26end:25493-25512 None:intergenic 60.0%
GCGGTTGGAGAGGTGGTTGA+CGG + contig26end:21157-21176 MsG0080048301.01.T01:CDS 60.0%
GGAAGAGGGTTTAGGAGGGG+AGG + contig26end:25299-25318 MsG0080048301.01.T01:intron 60.0%
GGGGGGCCACCATATTTAGC+TGG - contig26end:25063-25082 None:intergenic 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG - contig26end:25492-25511 None:intergenic 60.0%
GGTCCATGATCGAGCTACCG+CGG - contig26end:26558-26577 None:intergenic 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG - contig26end:25491-25510 None:intergenic 60.0%
GTTGGAGAGGTGGTTGACGG+CGG + contig26end:21160-21179 MsG0080048301.01.T01:CDS 60.0%
! GGCGGAGGAGTACGTAGAAG+AGG + contig26end:21181-21200 MsG0080048301.01.T01:CDS 60.0%
! GGCTAAGGAGCATGCAGGTC+CGG + contig26end:21459-21478 MsG0080048301.01.T01:CDS 60.0%
!! ACCCACTTGGGTTGGCCTGA+TGG - contig26end:25814-25833 None:intergenic 60.0%
ACGCCGCGGTAGCTCGATCA+TGG + contig26end:26552-26571 MsG0080048301.01.T01:CDS 65.0%
AGGGTTTAGGAGGGGAGGGG+AGG + contig26end:25304-25323 MsG0080048301.01.T01:intron 65.0%
CAGAGAGGGGCCTGGCAACA+TGG - contig26end:25245-25264 None:intergenic 65.0%
GGGTTTAGGAGGGGAGGGGA+GGG + contig26end:25305-25324 MsG0080048301.01.T01:intron 65.0%
GGTTTAGGAGGGGAGGGGAG+GGG + contig26end:25306-25325 MsG0080048301.01.T01:intron 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG - contig26end:25488-25507 None:intergenic 65.0%
!! ATCGGCGCTGTTGTCGGCTC+CGG + contig26end:21412-21431 MsG0080048301.01.T01:CDS 65.0%
ATTGCCGGCAGAGAGGGGCC+TGG - contig26end:25253-25272 None:intergenic 70.0%
GGAGAGGTGGTTGACGGCGG+CGG + contig26end:21163-21182 MsG0080048301.01.T01:CDS 70.0%
GTTGCCAGGCCCCTCTCTGC+CGG + contig26end:25246-25265 MsG0080048301.01.T01:intron 70.0%
TTAGGAGGGGAGGGGAGGGG+AGG + contig26end:25309-25328 MsG0080048301.01.T01:intron 70.0%
GAGGTGGTTGACGGCGGCGG+AGG + contig26end:21166-21185 MsG0080048301.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
contig26end gene 21154 27147 21154 ID=MsG0080048301.01;Name=MsG0080048301.01
contig26end mRNA 21154 27147 21154 ID=MsG0080048301.01.T01;Parent=MsG0080048301.01;Name=MsG0080048301.01.T01;_AED=0.42;_eAED=0.42;_QI=0|0|0|1|1|0.5|2|0|367
contig26end exon 21154 21571 21154 ID=MsG0080048301.01.T01:exon:22974;Parent=MsG0080048301.01.T01
contig26end exon 26462 27147 26462 ID=MsG0080048301.01.T01:exon:22973;Parent=MsG0080048301.01.T01
contig26end CDS 21154 21571 21154 ID=MsG0080048301.01.T01:cds;Parent=MsG0080048301.01.T01
contig26end CDS 26462 27147 26462 ID=MsG0080048301.01.T01:cds;Parent=MsG0080048301.01.T01
Gene Sequence

>MsG0080048301.01.T01

ATGGCGGTTGGAGAGGTGGTTGACGGCGGCGGAGGAGTACGTAGAAGAGGATGTACGTTTCAGAAAAACGACTTCTTCCCGGAGGAGTCGTTTAAGAGTTGGGAAAACTACGGAAAATCTATCATGGAAACACCTCTCCGGTTGAAGGATCGTTTGTTGAAACGGTCCAGTGATCATGCAGAGCTGGTGGAGATTAAGGCTAGGAGTGGGAATGAGATGAAGAAGACACTGAATTGGTGGGACTTGATGTGGTTTGGTATCGGCGCTGTTGTCGGCTCCGGAATATTTGTGCTTACCGGACTTGAGGCTAAGGAGCATGCAGGTCCGGCAGTTGTGTTGTCGTTTGTCATCTCCGGTATATCTGCTTTGTTATCAGTGTTTTGTTATACAGAGTTTGCTGTGGAAATTCCGGTTGCTGGTGGATCATTTGCTTACTTGAGAGTAGAAATGGGAGATTTTGTTGCCTTCATAGCTGCCGGAAACATCCTCCTTGAATATGTCATAGGCAACGCCGCGGTAGCTCGATCATGGACCTCCTATTTTGCCACCCTCTGCAACAAAAACCCTGATGATTTTCGTATAATAGTCCACAATATGAACCCTGACTATGGCCATCTTGACCCTATTGCTATTGGAGCTCTAGTAGCCATCACAGCCCTTGCAGTTTACAGCACCAAAGGCTCTTCCATCTTCAACTACATAGCCACAATGTTCCACATGGCTGTCATTATCTTCATAGTAATTGCTGGTCTCAGCAAAGCCAAAACCGAAAACTTCAATGACTTCACTCCTTTCGGGTTGCATGGAATGGTCAGTTCTTCGGCCGTTCTTTTCTTTGCTTATATTGGCTTTGATGCAGTTTCAACTATGGCTGAAGAAACTAAAAACCCTGGTAGAGACATTCCTATTGGTCTAGTTGGATCAATGACTATTACAACAGCAATATATTGCTTACTAGCAGCAACACTTTGTCTTATGCAGAATTACAAAGAACTTGATCCTGATGCTCCTTTCTCAGTTGCTTTTAGTGCTGTTGGAATGGATTGGGCTAAGTACATCGTTTCATTAGGTGCTTTGAAAGGAATGACAACGGTTTGTGGTTAG

Protein sequence

>MsG0080048301.01.T01

MAVGEVVDGGGGVRRRGCTFQKNDFFPEESFKSWENYGKSIMETPLRLKDRLLKRSSDHAELVEIKARSGNEMKKTLNWWDLMWFGIGAVVGSGIFVLTGLEAKEHAGPAVVLSFVISGISALLSVFCYTEFAVEIPVAGGSFAYLRVEMGDFVAFIAAGNILLEYVIGNAAVARSWTSYFATLCNKNPDDFRIIVHNMNPDYGHLDPIAIGALVAITALAVYSTKGSSIFNYIATMFHMAVIIFIVIAGLSKAKTENFNDFTPFGLHGMVSSSAVLFFAYIGFDAVSTMAEETKNPGRDIPIGLVGSMTITTAIYCLLAATLCLMQNYKELDPDAPFSVAFSAVGMDWAKYIVSLGALKGMTTVCG*