AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010016.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010016.01.T01 MTR_2g076340 98.295 352 6 0 80 431 56 407 0.0 721
MsG0280010016.01.T01 MTR_3g072330 56.012 341 149 1 80 419 49 389 1.98e-137 399
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010016.01.T01 AT3G14930 80.980 347 66 0 80 426 60 406 0.0 603
MsG0280010016.01.T01 AT3G14930 80.980 347 66 0 80 426 60 406 0.0 603
MsG0280010016.01.T01 AT3G14930 81.155 329 62 0 98 426 1 329 0.0 572
MsG0280010016.01.T01 AT2G40490 52.691 353 166 1 68 419 42 394 1.33e-134 392

Find 122 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACTTGTTCTTTATATAAA+TGG 0.110324 2:+62863515 MsG0280010016.01.T01:CDS
CTGGTAGTTCAAGCCATTTC+TGG 0.153540 2:+62864700 MsG0280010016.01.T01:three_prime_UTR
GAACTTTCAGATTGTAAATT+TGG 0.179718 2:+62863469 MsG0280010016.01.T01:intron
TTATTGCTTCAATTTCAATT+AGG 0.210841 2:-62860364 None:intergenic
GACACTGGAGTTGATGTTAT+TGG 0.226105 2:+62863566 MsG0280010016.01.T01:CDS
ACGCTCTGAGGAGGGATTAA+AGG 0.251035 2:+62862337 MsG0280010016.01.T01:CDS
TAGTTTACCTCTTTGATATA+AGG 0.260471 2:-62862785 None:intergenic
TATTGCTTCAATTTCAATTA+GGG 0.261235 2:-62860363 None:intergenic
TAAAGAACAAGTGGTGTATC+TGG 0.272940 2:-62863506 None:intergenic
CTGCATGATAAATTAATTAG+AGG 0.292119 2:+62864852 MsG0280010016.01.T01:three_prime_UTR
ATACAGCACCACACATTCTA+AGG 0.323236 2:+62862627 MsG0280010016.01.T01:CDS
ATTACTATCAGATCCTCTTT+TGG 0.323417 2:+62862034 MsG0280010016.01.T01:intron
GAACACCATGCCCAAGATTA+AGG 0.327102 2:-62864534 None:intergenic
ACCTCTGAATTTCTTCTGTT+AGG 0.334578 2:-62863694 None:intergenic
TGATTCAACTCGGCATTGTT+AGG 0.344228 2:-62859335 None:intergenic
GTTGGATTCTTTCACCTCAT+TGG 0.345088 2:-62859297 None:intergenic
AGCCATTTCTGGAAGAGTTC+AGG 0.359288 2:+62864711 MsG0280010016.01.T01:three_prime_UTR
TAGAAATTTCTTTGCAGCCT+TGG 0.361660 2:+62862198 MsG0280010016.01.T01:CDS
CTTGGGCATGGTGTTCTTGT+TGG 0.374900 2:+62864541 MsG0280010016.01.T01:CDS
AATTGAAATTGAAGCAATAA+AGG 0.376534 2:+62860367 MsG0280010016.01.T01:CDS
ACTCGACTGGACAGTGGATA+TGG 0.377098 2:+62863589 MsG0280010016.01.T01:CDS
CTTTATTATACTCAAACATA+TGG 0.380738 2:-62864882 None:intergenic
TGTATGGCACATGCTCTTAA+TGG 0.381907 2:-62862609 None:intergenic
GCATACAAATATTTGATTCA+TGG 0.385365 2:+62862720 MsG0280010016.01.T01:CDS
GTTCTTTATATAAATGGAAA+TGG 0.386673 2:+62863521 MsG0280010016.01.T01:CDS
TTCAGGGTTGTGAGGTCTGC+AGG 0.389800 2:+62864496 MsG0280010016.01.T01:intron
CATGCCGGAGGACGGCTAAC+AGG 0.394517 2:-62862077 None:intergenic
CCTCTGAATTTCTTCTGTTA+GGG 0.395997 2:-62863693 None:intergenic
AGACAACACATCCTTAATCT+TGG 0.400361 2:+62864523 MsG0280010016.01.T01:CDS
AACCTGAACTCTTCCAGAAA+TGG 0.413215 2:-62864713 None:intergenic
TTCATAGAAACTTGCGATGA+TGG 0.413316 2:-62859273 None:intergenic
GAGAAAATAATTACTCCATC+AGG 0.416476 2:-62862233 None:intergenic
CATACAAATATTTGATTCAT+GGG 0.420865 2:+62862721 MsG0280010016.01.T01:CDS
CGTATCGGTGACTGTATAAC+AGG 0.424760 2:-62862317 None:intergenic
CTAAGCTTGTCAAAGTCAAT+CGG 0.426657 2:-62862368 None:intergenic
GAAGAAGAAGATTAGGTAGC+GGG 0.442728 2:+62863618 MsG0280010016.01.T01:CDS
TCTTCTGTTAGGGCAGTAAG+AGG 0.448836 2:-62863683 None:intergenic
CTTACACCTCTACCTGCATT+CGG 0.449149 2:+62862263 MsG0280010016.01.T01:CDS
AGAAGATTAGGTAGCGGGAT+TGG 0.454956 2:+62863623 MsG0280010016.01.T01:CDS
AAATGTGCAACAGCTTCTTC+AGG 0.457455 2:-62864568 None:intergenic
TTACACCTCTACCTGCATTC+GGG 0.464392 2:+62862264 MsG0280010016.01.T01:CDS
GACAACACATCCTTAATCTT+GGG 0.466437 2:+62864524 MsG0280010016.01.T01:CDS
GAGTCGAGCTCAGACGAGTT+CGG 0.468486 2:+62860319 MsG0280010016.01.T01:CDS
GACAACTGCCGCCTCATATG+TGG 0.470143 2:+62862747 MsG0280010016.01.T01:CDS
TTAGAATGTGTGGTGCTGTA+TGG 0.470252 2:-62862625 None:intergenic
GACCAGAGTTCCCACATATG+AGG 0.473769 2:-62862758 None:intergenic
GCTGATGGAAGAAGAAGATT+AGG 0.476250 2:+62863611 MsG0280010016.01.T01:CDS
TGTGGGAGCACCTTGGACAT+TGG 0.478006 2:+62862544 MsG0280010016.01.T01:CDS
CTCGCAGCCTTAACCAAAAG+AGG 0.480396 2:-62862047 None:intergenic
GACATTGGCAACGTATATAG+TGG 0.481356 2:+62862559 MsG0280010016.01.T01:CDS
GGCAACGTATATAGTGGAAG+GGG 0.484531 2:+62862565 MsG0280010016.01.T01:CDS
GCTTCAATTTCAATTAGGGT+TGG 0.490284 2:-62860359 None:intergenic
CAGTCGTCTCTGACCTCTCT+CGG 0.502489 2:-62862166 None:intergenic
AGAGGGGAGAATAAAGAAGC+AGG 0.503530 2:-62863665 None:intergenic
CGCCTCATATGTGGGAACTC+TGG 0.505272 2:+62862756 MsG0280010016.01.T01:CDS
CAGAAATGGCTTGAACTACC+AGG 0.509682 2:-62864699 None:intergenic
TCATAGAAACTTGCGATGAT+GGG 0.511003 2:-62859272 None:intergenic
AGGTTTCAGCTCATCAAAGT+TGG 0.511289 2:-62859315 None:intergenic
TCTGACCTCTCTCGGAAGGA+TGG 0.513347 2:-62862158 None:intergenic
GCATGGATGATGCGCCAAGC+AGG 0.516013 2:+62862095 MsG0280010016.01.T01:CDS
CTGTTAGCCGTCCTCCGGCA+TGG 0.518001 2:+62862078 MsG0280010016.01.T01:CDS
AGATCCTGTTAGCCGTCCTC+CGG 0.522619 2:+62862073 MsG0280010016.01.T01:CDS
CACATTTCTTTGATGTCGCG+AGG 0.528865 2:+62864584 MsG0280010016.01.T01:CDS
CAAATATTTGATTCATGGGG+TGG 0.529717 2:+62862725 MsG0280010016.01.T01:CDS
TCTGCTTTCTCATTTGTCAA+AGG 0.532489 2:+62862652 MsG0280010016.01.T01:CDS
TTGTCACTTTCAGGGTTGTG+AGG 0.534765 2:+62864488 MsG0280010016.01.T01:intron
CTTCTGTTAGGGCAGTAAGA+GGG 0.535185 2:-62863682 None:intergenic
AAAGAACAAGTGGTGTATCT+GGG 0.541095 2:-62863505 None:intergenic
TAGCCATGTACCTTCCTGCT+TGG 0.546091 2:-62862109 None:intergenic
TTCTGTTAGGGCAGTAAGAG+GGG 0.546842 2:-62863681 None:intergenic
TAAGCTTGTCAAAGTCAATC+GGG 0.548224 2:-62862367 None:intergenic
AGATTAAGGATGTGTTGTCT+AGG 0.548882 2:-62864520 None:intergenic
CCAGGAAAAGTGAGTACAGC+AGG 0.549326 2:-62864681 None:intergenic
GGAAGAAGAAGATTAGGTAG+CGG 0.558618 2:+62863617 MsG0280010016.01.T01:CDS
TCGATCCCGAATGCAGGTAG+AGG 0.560715 2:-62862269 None:intergenic
CGAATGCAGGTAGAGGTGTA+AGG 0.561238 2:-62862262 None:intergenic
ATTATACTCAAACATATGGA+AGG 0.561320 2:-62864878 None:intergenic
TCAAAGTCGATCCCGAATGC+AGG 0.561442 2:-62862275 None:intergenic
GCTTGGCGCATCATCCATGC+CGG 0.565380 2:-62862092 None:intergenic
CGTCTCTGACCTCTCTCGGA+AGG 0.569014 2:-62862162 None:intergenic
CTTTGACATAGAAGATGTGA+GGG 0.572515 2:+62862292 MsG0280010016.01.T01:CDS
GCGCCAAGCAGGAAGGTACA+TGG 0.572903 2:+62862106 MsG0280010016.01.T01:CDS
CGTTGGACTATGATTCAACT+CGG 0.575515 2:-62859345 None:intergenic
AACATCCATCCTTCCGAGAG+AGG 0.577108 2:+62862153 MsG0280010016.01.T01:CDS
AATCCCTCCTCAGAGCGTAT+CGG 0.581435 2:-62862332 None:intergenic
GCATCATCCATGCCGGAGGA+CGG 0.583208 2:-62862085 None:intergenic
TTGGCAACGTATATAGTGGA+AGG 0.583350 2:+62862563 MsG0280010016.01.T01:CDS
TTGATGTTATTGGACTCGAC+TGG 0.583463 2:+62863576 MsG0280010016.01.T01:CDS
CTTTATATAAATGGAAATGG+TGG 0.584814 2:+62863524 MsG0280010016.01.T01:CDS
AGCAGAGTCCTTAGAATGTG+TGG 0.585181 2:-62862635 None:intergenic
CCATTTATATAAAGAACAAG+TGG 0.585667 2:-62863515 None:intergenic
ACAACTGCCGCCTCATATGT+GGG 0.588080 2:+62862748 MsG0280010016.01.T01:CDS
ACTTAAGATCCTGCGGCAAG+AGG 0.593099 2:+62862406 MsG0280010016.01.T01:CDS
GTCAAAGCCTTATATCAAAG+AGG 0.596608 2:+62862778 MsG0280010016.01.T01:CDS
CACATCCTTAATCTTGGGCA+TGG 0.600175 2:+62864529 MsG0280010016.01.T01:CDS
ATATACGTTGCCAATGTCCA+AGG 0.600785 2:-62862554 None:intergenic
TGGCAACGTATATAGTGGAA+GGG 0.603156 2:+62862564 MsG0280010016.01.T01:CDS
TGGACAGTGGATATGGCTGA+TGG 0.608369 2:+62863596 MsG0280010016.01.T01:CDS
TCACCGATACGCTCTGAGGA+GGG 0.608994 2:+62862329 MsG0280010016.01.T01:CDS
TTGCTGCATGAGAATCAAGA+AGG 0.609186 2:-62864740 None:intergenic
GTCACCGATACGCTCTGAGG+AGG 0.616864 2:+62862328 MsG0280010016.01.T01:CDS
ACTTTGACATAGAAGATGTG+AGG 0.620333 2:+62862291 MsG0280010016.01.T01:CDS
GATTGGTGTGCAAGGAAACG+TGG 0.621871 2:+62863640 MsG0280010016.01.T01:CDS
TGTCTATCATACGCTCGAGA+AGG 0.625970 2:-62863547 None:intergenic
TGGCGCATCATCCATGCCGG+AGG 0.630576 2:-62862089 None:intergenic
TCAGGCCTAAAAGCTTTCCA+AGG 0.632316 2:-62862215 None:intergenic
CTCGAGCGTATGATAGACAC+TGG 0.632830 2:+62863551 MsG0280010016.01.T01:CDS
AGTGAGCCCCAGATTCCACT+TGG 0.635817 2:-62862697 None:intergenic
GGTAGCGGGATTGGTGTGCA+AGG 0.635971 2:+62863632 MsG0280010016.01.T01:CDS
GAGGGGAGAATAAAGAAGCA+GGG 0.636691 2:-62863664 None:intergenic
GGATGATGCGCCAAGCAGGA+AGG 0.641154 2:+62862099 MsG0280010016.01.T01:CDS
TCCCACAAAACCTAAAACAG+CGG 0.645378 2:-62862528 None:intergenic
ATACAAATATTTGATTCATG+GGG 0.650037 2:+62862722 MsG0280010016.01.T01:CDS
CCCTAACAGAAGAAATTCAG+AGG 0.651466 2:+62863693 MsG0280010016.01.T01:CDS
CAGAGTTCCCACATATGAGG+CGG 0.665889 2:-62862755 None:intergenic
GAGAATCACTTAAGATCCTG+CGG 0.672224 2:+62862399 MsG0280010016.01.T01:CDS
AAGTTTCTATGAAGCCAATG+AGG 0.674069 2:+62859283 MsG0280010016.01.T01:CDS
TATTGGACTCGACTGGACAG+TGG 0.685653 2:+62863583 MsG0280010016.01.T01:CDS
ACAGTCACCGATACGCTCTG+AGG 0.696424 2:+62862325 MsG0280010016.01.T01:CDS
GGAAAAGTGAGTACAGCAGG+TGG 0.701187 2:-62864678 None:intergenic
GCAACGTATATAGTGGAAGG+GGG 0.725564 2:+62862566 MsG0280010016.01.T01:CDS
TTTGACATAGAAGATGTGAG+GGG 0.768540 2:+62862293 MsG0280010016.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATAAATAGAAAATTCT+AGG + Chr2:62863392-62863411 MsG0280010016.01.T01:intron 10.0%
!!! AAAGAATTTGTTATTTAATT+TGG + Chr2:62864901-62864920 MsG0280010016.01.T01:three_prime_UTR 10.0%
!!! GTTTGTTTTAATAAATTAAA+GGG + Chr2:62860109-62860128 MsG0280010016.01.T01:intron 10.0%
!!! TAATTTTTCTATTTAAATGA+AGG + Chr2:62861593-62861612 MsG0280010016.01.T01:intron 10.0%
!!! TGTTTGTTTTAATAAATTAA+AGG + Chr2:62860108-62860127 MsG0280010016.01.T01:intron 10.0%
!! CATATTGTTTATATTTCATT+GGG + Chr2:62863335-62863354 MsG0280010016.01.T01:intron 15.0%
!! CTTCTATATATTATGATAAA+GGG + Chr2:62861347-62861366 MsG0280010016.01.T01:intron 15.0%
!! TATCATTGAAAATAATGTTA+CGG + Chr2:62861894-62861913 MsG0280010016.01.T01:intron 15.0%
!! TCATATTGTTTATATTTCAT+TGG + Chr2:62863334-62863353 MsG0280010016.01.T01:intron 15.0%
!! TCTTCTATATATTATGATAA+AGG + Chr2:62861346-62861365 MsG0280010016.01.T01:intron 15.0%
!! TTAGTTTCAATATTATGAAT+TGG + Chr2:62864270-62864289 MsG0280010016.01.T01:intron 15.0%
!!! AAAAAATATTTTTAGCCTAA+TGG - Chr2:62860523-62860542 None:intergenic 15.0%
!!! ATTAGGCTAAAAATATTTTT+TGG + Chr2:62860522-62860541 MsG0280010016.01.T01:intron 15.0%
!!! TGTTTGATTGATTTAAAATT+AGG + Chr2:62860453-62860472 MsG0280010016.01.T01:intron 15.0%
!! AAAATTACTAAAGAGCAAAT+GGG - Chr2:62859392-62859411 None:intergenic 20.0%
!! AACAAAAAGTAATTGATTAC+TGG + Chr2:62860838-62860857 MsG0280010016.01.T01:intron 20.0%
!! AACAAGTACATAAATATCAT+AGG - Chr2:62859788-62859807 None:intergenic 20.0%
!! AATTGAAATTGAAGCAATAA+AGG + Chr2:62860367-62860386 MsG0280010016.01.T01:CDS 20.0%
!! ATACAAATATTTGATTCATG+GGG + Chr2:62862722-62862741 MsG0280010016.01.T01:CDS 20.0%
!! CATACAAATATTTGATTCAT+GGG + Chr2:62862721-62862740 MsG0280010016.01.T01:CDS 20.0%
!! CTTTATTATACTCAAACATA+TGG - Chr2:62864885-62864904 None:intergenic 20.0%
!! GTAATATAAGAAATGAGAAA+AGG - Chr2:62863442-62863461 None:intergenic 20.0%
!! GTATGTATGAATTGAAATTA+GGG + Chr2:62859546-62859565 MsG0280010016.01.T01:intron 20.0%
!! GTTCTTTATATAAATGGAAA+TGG + Chr2:62863521-62863540 MsG0280010016.01.T01:CDS 20.0%
!! TAAAATTACTAAAGAGCAAA+TGG - Chr2:62859393-62859412 None:intergenic 20.0%
!! TAATTTAGTGCAAATATCTT+TGG - Chr2:62859912-62859931 None:intergenic 20.0%
!! TATTGCTTCAATTTCAATTA+GGG - Chr2:62860366-62860385 None:intergenic 20.0%
!! TGTATGTATGAATTGAAATT+AGG + Chr2:62859545-62859564 MsG0280010016.01.T01:intron 20.0%
!! TTATTGCTTCAATTTCAATT+AGG - Chr2:62860367-62860386 None:intergenic 20.0%
!! TTGAAAAGATTTAGATATTG+TGG + Chr2:62860986-62861005 MsG0280010016.01.T01:intron 20.0%
!!! AAACCTAAAACAATTTTATC+AGG - Chr2:62862836-62862855 None:intergenic 20.0%
!!! AATATTTTTTGGTTCAACTA+AGG + Chr2:62860533-62860552 MsG0280010016.01.T01:intron 20.0%
!!! AATTTCTTTTGTTGAAGAAA+GGG + Chr2:62862889-62862908 MsG0280010016.01.T01:intron 20.0%
!!! ACTTTTTTAGGTTATAATGA+AGG + Chr2:62861087-62861106 MsG0280010016.01.T01:intron 20.0%
!!! ATACCTGATAAAATTGTTTT+AGG + Chr2:62862830-62862849 MsG0280010016.01.T01:intron 20.0%
!!! TTTACGTTGTTTTAAAACAA+AGG + Chr2:62861516-62861535 MsG0280010016.01.T01:intron 20.0%
! AAAAAAACGATAAGTAGTGA+GGG - Chr2:62862493-62862512 None:intergenic 25.0%
! AAAAAGTGACAAAAAGATGA+GGG - Chr2:62861381-62861400 None:intergenic 25.0%
! AATAAAATCATTGACCTAGT+CGG - Chr2:62860074-62860093 None:intergenic 25.0%
! AGAAATGAAAGGATAATGAA+GGG - Chr2:62861930-62861949 None:intergenic 25.0%
! AGATCCAATAAATATGAGTA+AGG + Chr2:62861317-62861336 MsG0280010016.01.T01:intron 25.0%
! AGTGATAGAAATGTTTCTTA+AGG + Chr2:62864223-62864242 MsG0280010016.01.T01:intron 25.0%
! ATAATCACAAATCACAAGAT+AGG - Chr2:62859483-62859502 None:intergenic 25.0%
! ATATCAAAGAGGTAAACTAA+AGG + Chr2:62862789-62862808 MsG0280010016.01.T01:intron 25.0%
! ATCCAATAAATATGAGTAAG+GGG + Chr2:62861319-62861338 MsG0280010016.01.T01:intron 25.0%
! ATTACACAAAAATTGCCATT+AGG + Chr2:62860505-62860524 MsG0280010016.01.T01:intron 25.0%
! ATTATACTCAAACATATGGA+AGG - Chr2:62864881-62864900 None:intergenic 25.0%
! ATTTCTGAATTATGATGCTA+TGG + Chr2:62859510-62859529 MsG0280010016.01.T01:intron 25.0%
! CCACTTGTTCTTTATATAAA+TGG + Chr2:62863515-62863534 MsG0280010016.01.T01:CDS 25.0%
! CCATTTATATAAAGAACAAG+TGG - Chr2:62863518-62863537 None:intergenic 25.0%
! CTGACTTTGTAGAAAAATTA+AGG - Chr2:62861736-62861755 None:intergenic 25.0%
! CTGCATGATAAATTAATTAG+AGG + Chr2:62864852-62864871 MsG0280010016.01.T01:three_prime_UTR 25.0%
! CTTTATATAAATGGAAATGG+TGG + Chr2:62863524-62863543 MsG0280010016.01.T01:CDS 25.0%
! CTTTCTTCAACAAAAGAAAT+TGG - Chr2:62862890-62862909 None:intergenic 25.0%
! GAACTTTCAGATTGTAAATT+TGG + Chr2:62863469-62863488 MsG0280010016.01.T01:intron 25.0%
! GATCCAATAAATATGAGTAA+GGG + Chr2:62861318-62861337 MsG0280010016.01.T01:intron 25.0%
! GCATACAAATATTTGATTCA+TGG + Chr2:62862720-62862739 MsG0280010016.01.T01:CDS 25.0%
! GTAAATGTGTAACAGATTTA+TGG + Chr2:62861460-62861479 MsG0280010016.01.T01:intron 25.0%
! TAAAAAAACGATAAGTAGTG+AGG - Chr2:62862494-62862513 None:intergenic 25.0%
! TAAAAAGTGACAAAAAGATG+AGG - Chr2:62861382-62861401 None:intergenic 25.0%
! TAAACAAAAAAGATGCAGAA+AGG - Chr2:62864105-62864124 None:intergenic 25.0%
! TAGTTTACCTCTTTGATATA+AGG - Chr2:62862788-62862807 None:intergenic 25.0%
! TATGTTATTGGATAACTATG+TGG + Chr2:62860902-62860921 MsG0280010016.01.T01:intron 25.0%
! TTATCAGGTATGAAAGAAAT+GGG - Chr2:62862821-62862840 None:intergenic 25.0%
! TTCAAAAAAGGTTCAACAAT+TGG - Chr2:62861056-62861075 None:intergenic 25.0%
! TTTATCAGGTATGAAAGAAA+TGG - Chr2:62862822-62862841 None:intergenic 25.0%
!! CAATTTCTTTTGTTGAAGAA+AGG + Chr2:62862888-62862907 MsG0280010016.01.T01:intron 25.0%
!! TGATAATGAACCTTCAAAAA+AGG - Chr2:62861068-62861087 None:intergenic 25.0%
!! TTGTAAATTTTTGCTGCAAA+TGG + Chr2:62863202-62863221 MsG0280010016.01.T01:intron 25.0%
!!! AATTGATTACTGGCATTTTT+TGG + Chr2:62860848-62860867 MsG0280010016.01.T01:intron 25.0%
!!! AATTGTTGAACCTTTTTTGA+AGG + Chr2:62861055-62861074 MsG0280010016.01.T01:intron 25.0%
!!! AGGTTCATTATCACTTTTTT+AGG + Chr2:62861075-62861094 MsG0280010016.01.T01:intron 25.0%
!!! ATTGATTACTGGCATTTTTT+GGG + Chr2:62860849-62860868 MsG0280010016.01.T01:intron 25.0%
!!! TACTTATCGTTTTTTTAGGT+TGG + Chr2:62862497-62862516 MsG0280010016.01.T01:intron 25.0%
!!! TCACTACTTATCGTTTTTTT+AGG + Chr2:62862493-62862512 MsG0280010016.01.T01:intron 25.0%
!!! TGGTTATTTTGCTATGTTAT+TGG + Chr2:62860890-62860909 MsG0280010016.01.T01:intron 25.0%
!!! TGGTTTTAGTTGTTGAAATT+TGG + Chr2:62860815-62860834 MsG0280010016.01.T01:intron 25.0%
!!! TGTCACTTTTTACTCTTTTA+TGG + Chr2:62861390-62861409 MsG0280010016.01.T01:intron 25.0%
AACATCAGTTTCTCATTATG+TGG - Chr2:62864035-62864054 None:intergenic 30.0%
AACCCCTTACTCATATTTAT+TGG - Chr2:62861324-62861343 None:intergenic 30.0%
AATGGTTACTTGCTTAATTC+TGG + Chr2:62861118-62861137 MsG0280010016.01.T01:intron 30.0%
ACTATGTGGTAAGAATCAAA+AGG + Chr2:62860916-62860935 MsG0280010016.01.T01:intron 30.0%
AGTACAATGTGTTCAAATAG+TGG - Chr2:62863882-62863901 None:intergenic 30.0%
AGTCAGTTAAGCAAATACTA+GGG - Chr2:62864163-62864182 None:intergenic 30.0%
ATAATGAAGGCTCTTTCTAA+TGG + Chr2:62861100-62861119 MsG0280010016.01.T01:intron 30.0%
ATGTTGTCAATTGCATATAG+TGG - Chr2:62863973-62863992 None:intergenic 30.0%
CAGAAATGAAAGGATAATGA+AGG - Chr2:62861931-62861950 None:intergenic 30.0%
CTATGTGGTAAGAATCAAAA+GGG + Chr2:62860917-62860936 MsG0280010016.01.T01:intron 30.0%
CTCATTGTGATGAATAAGAT+TGG + Chr2:62864410-62864429 MsG0280010016.01.T01:intron 30.0%
GAAATGAGAAAAGGAGAAAT+TGG - Chr2:62863433-62863452 None:intergenic 30.0%
GACACGAATGATAAAGTTAA+TGG - Chr2:62863734-62863753 None:intergenic 30.0%
GAGAAAATAATTACTCCATC+AGG - Chr2:62862236-62862255 None:intergenic 30.0%
GTAGTTTAACAACATTAGAG+AGG + Chr2:62859944-62859963 MsG0280010016.01.T01:intron 30.0%
GTGAGAAGGTGATTAAATTA+AGG - Chr2:62861550-62861569 None:intergenic 30.0%
GTTAATCATTTGTGACACAA+AGG - Chr2:62861688-62861707 None:intergenic 30.0%
GTTATTGCCATATATGTTCT+AGG + Chr2:62863765-62863784 MsG0280010016.01.T01:intron 30.0%
TAGATATTGTGGAATACTTG+AGG + Chr2:62860997-62861016 MsG0280010016.01.T01:intron 30.0%
TATCAGGTATGAAAGAAATG+GGG - Chr2:62862820-62862839 None:intergenic 30.0%
TATGTGGTAAGAATCAAAAG+GGG + Chr2:62860918-62860937 MsG0280010016.01.T01:intron 30.0%
TCTGAGAATGATATCTTTCA+AGG + Chr2:62861247-62861266 MsG0280010016.01.T01:intron 30.0%
TGCTGAATCATTTATAGAAG+TGG + Chr2:62860556-62860575 MsG0280010016.01.T01:intron 30.0%
TGTTAAGAGATGAATGAAAC+AGG - Chr2:62861214-62861233 None:intergenic 30.0%
TTAAGAACTATCTAAGAGCA+TGG + Chr2:62860631-62860650 MsG0280010016.01.T01:intron 30.0%
TTAAGCCAAAAACTGCAAAT+TGG - Chr2:62861636-62861655 None:intergenic 30.0%
TTTAATGTTCACGAACAACT+CGG - Chr2:62860221-62860240 None:intergenic 30.0%
TTTGAAGATTGAAGATTCAG+AGG + Chr2:62860761-62860780 MsG0280010016.01.T01:intron 30.0%
TTTGTAGAAAGTGATTGAGT+TGG + Chr2:62860795-62860814 MsG0280010016.01.T01:intron 30.0%
! AAGAGCATGGTCTTAAATTA+CGG + Chr2:62860644-62860663 MsG0280010016.01.T01:intron 30.0%
! AGATTACATTGTTTTCCAAG+TGG + Chr2:62862682-62862701 MsG0280010016.01.T01:CDS 30.0%
! ATTACTATCAGATCCTCTTT+TGG + Chr2:62862034-62862053 MsG0280010016.01.T01:intron 30.0%
! ATTTATGTACTTGTTTGCTG+AGG + Chr2:62859793-62859812 MsG0280010016.01.T01:intron 30.0%
! CAATTTAAAACCATGCTCTT+AGG - Chr2:62861810-62861829 None:intergenic 30.0%
! GCATAGTTTGTAGTATTGTA+AGG - Chr2:62859997-62860016 None:intergenic 30.0%
!! ATGATTACTTGTCACTTTCA+GGG + Chr2:62864480-62864499 MsG0280010016.01.T01:intron 30.0%
!! TATGATTACTTGTCACTTTC+AGG + Chr2:62864479-62864498 MsG0280010016.01.T01:intron 30.0%
!!! AAGAGCATGGTTTTAAATTG+CGG + Chr2:62861810-62861829 MsG0280010016.01.T01:intron 30.0%
!!! CAGAAAAGTTGTAGTTTTGA+AGG + Chr2:62861416-62861435 MsG0280010016.01.T01:intron 30.0%
!!! CCTTTTTTTTAACTCGAGTT+CGG - Chr2:62860248-62860267 None:intergenic 30.0%
!!! TTATCGTTTTTTTAGGTTGG+TGG + Chr2:62862500-62862519 MsG0280010016.01.T01:intron 30.0%
!!! TTGATTACTGGCATTTTTTG+GGG + Chr2:62860850-62860869 MsG0280010016.01.T01:intron 30.0%
!!! TTTGACAAGCTTAGTTTTGT+AGG + Chr2:62862377-62862396 MsG0280010016.01.T01:CDS 30.0%
AAAATTCGGTTGCAACATGT+CGG + Chr2:62862430-62862449 MsG0280010016.01.T01:intron 35.0%
AAAGAACAAGTGGTGTATCT+GGG - Chr2:62863508-62863527 None:intergenic 35.0%
AACAGAAGAAATTCAGAGGT+TGG + Chr2:62863697-62863716 MsG0280010016.01.T01:intron 35.0%
AACTGAAATTAGTGACACGA+AGG + Chr2:62864187-62864206 MsG0280010016.01.T01:intron 35.0%
AAGTTTCTATGAAGCCAATG+AGG + Chr2:62859283-62859302 MsG0280010016.01.T01:CDS 35.0%
ACCTCTGAATTTCTTCTGTT+AGG - Chr2:62863697-62863716 None:intergenic 35.0%
ACGCTAACAACATACTTGTA+CGG + Chr2:62859878-62859897 MsG0280010016.01.T01:intron 35.0%
ACTGAAATTAGTGACACGAA+GGG + Chr2:62864188-62864207 MsG0280010016.01.T01:intron 35.0%
ACTTTGACATAGAAGATGTG+AGG + Chr2:62862291-62862310 MsG0280010016.01.T01:CDS 35.0%
AGACAACACATCCTTAATCT+TGG + Chr2:62864523-62864542 MsG0280010016.01.T01:CDS 35.0%
AGATTAAGGATGTGTTGTCT+AGG - Chr2:62864523-62864542 None:intergenic 35.0%
AGTCTCTCCTAGAACATATA+TGG - Chr2:62863775-62863794 None:intergenic 35.0%
CAAATATTTGATTCATGGGG+TGG + Chr2:62862725-62862744 MsG0280010016.01.T01:CDS 35.0%
CACCATGTCATACAAAACTT+TGG - Chr2:62864333-62864352 None:intergenic 35.0%
CAGTCAGTTAAGCAAATACT+AGG - Chr2:62864164-62864183 None:intergenic 35.0%
CCGAACTCGAGTTAAAAAAA+AGG + Chr2:62860245-62860264 MsG0280010016.01.T01:intron 35.0%
CCTCTGAATTTCTTCTGTTA+GGG - Chr2:62863696-62863715 None:intergenic 35.0%
CTAAATTAGCCCACCTAAAT+TGG - Chr2:62863067-62863086 None:intergenic 35.0%
CTAAGCTTGTCAAAGTCAAT+CGG - Chr2:62862371-62862390 None:intergenic 35.0%
CTCATTATGTGGAATCATCA+AGG - Chr2:62864024-62864043 None:intergenic 35.0%
CTGTGAATGATTGATTAACC+AGG + Chr2:62860394-62860413 MsG0280010016.01.T01:intron 35.0%
CTTTGACATAGAAGATGTGA+GGG + Chr2:62862292-62862311 MsG0280010016.01.T01:CDS 35.0%
GAATTATGATGCTATGGTTC+TGG + Chr2:62859516-62859535 MsG0280010016.01.T01:intron 35.0%
GACAACACATCCTTAATCTT+GGG + Chr2:62864524-62864543 MsG0280010016.01.T01:CDS 35.0%
GACAATTAACTCGTTGAACT+TGG + Chr2:62859615-62859634 MsG0280010016.01.T01:intron 35.0%
GAGTTGTATATAGTTCGACT+CGG + Chr2:62859703-62859722 MsG0280010016.01.T01:intron 35.0%
GCATATGAGACAGAAATGAA+AGG - Chr2:62861941-62861960 None:intergenic 35.0%
GCTTCAATTTCAATTAGGGT+TGG - Chr2:62860362-62860381 None:intergenic 35.0%
GTAAATCATTTGCGACACAA+AGG - Chr2:62861572-62861591 None:intergenic 35.0%
GTATACGCTATAGCTGTATT+TGG - Chr2:62863937-62863956 None:intergenic 35.0%
GTATGAATTGAAATTAGGGC+TGG + Chr2:62859550-62859569 MsG0280010016.01.T01:intron 35.0%
TAAAGAACAAGTGGTGTATC+TGG - Chr2:62863509-62863528 None:intergenic 35.0%
TAAGCTTGTCAAAGTCAATC+GGG - Chr2:62862370-62862389 None:intergenic 35.0%
TACTTGCTTAATTCTGGTGA+AGG + Chr2:62861124-62861143 MsG0280010016.01.T01:intron 35.0%
TAGAAATTTCTTTGCAGCCT+TGG + Chr2:62862198-62862217 MsG0280010016.01.T01:CDS 35.0%
TAGTATATACGTAACCCACT+TGG + Chr2:62862966-62862985 MsG0280010016.01.T01:intron 35.0%
TATGATTCCTCTTGGTTAGT+TGG + Chr2:62863132-62863151 MsG0280010016.01.T01:intron 35.0%
TCAATTGCATATAGTGGCTA+TGG - Chr2:62863967-62863986 None:intergenic 35.0%
TCATAGAAACTTGCGATGAT+GGG - Chr2:62859275-62859294 None:intergenic 35.0%
TCTGCTTTCTCATTTGTCAA+AGG + Chr2:62862652-62862671 MsG0280010016.01.T01:CDS 35.0%
TGGTTTAATCAGTCAGACTT+GGG + Chr2:62864290-62864309 MsG0280010016.01.T01:intron 35.0%
TTACTAAAGAGCAAATGGGA+TGG - Chr2:62859388-62859407 None:intergenic 35.0%
TTCATAGAAACTTGCGATGA+TGG - Chr2:62859276-62859295 None:intergenic 35.0%
TTCATCTCTTAACACTGCTT+TGG + Chr2:62861220-62861239 MsG0280010016.01.T01:intron 35.0%
TTGGTTTAATCAGTCAGACT+TGG + Chr2:62864289-62864308 MsG0280010016.01.T01:intron 35.0%
TTTCTGAGCTCTGTATAGTT+AGG + Chr2:62862925-62862944 MsG0280010016.01.T01:intron 35.0%
TTTGACATAGAAGATGTGAG+GGG + Chr2:62862293-62862312 MsG0280010016.01.T01:CDS 35.0%
! AATTTTGTACATTGCTGCGT+CGG + Chr2:62864786-62864805 MsG0280010016.01.T01:three_prime_UTR 35.0%
! ATACAAAACTTTGGCCTTTC+TGG - Chr2:62864324-62864343 None:intergenic 35.0%
! ATCAAAGAGATTTTGCTTCC+TGG - Chr2:62860415-62860434 None:intergenic 35.0%
! ATGGTCTTAAATTACGGTTG+CGG + Chr2:62860650-62860669 MsG0280010016.01.T01:intron 35.0%
! ATTGTTTTCCAAGTGGAATC+TGG + Chr2:62862689-62862708 MsG0280010016.01.T01:CDS 35.0%
! GCTACTACTATTTTCCTTAG+TGG + Chr2:62860039-62860058 MsG0280010016.01.T01:intron 35.0%
! GTCAAAGCCTTATATCAAAG+AGG + Chr2:62862778-62862797 MsG0280010016.01.T01:CDS 35.0%
! TGAGACCAATTTGCAGTTTT+TGG + Chr2:62861628-62861647 MsG0280010016.01.T01:intron 35.0%
! TTGTTTTCCAAGTGGAATCT+GGG + Chr2:62862690-62862709 MsG0280010016.01.T01:CDS 35.0%
!! ATCAGATCCTCTTTTGGTTA+AGG + Chr2:62862040-62862059 MsG0280010016.01.T01:intron 35.0%
!! GGGTTGGTAAATAATTTGAC+TGG + Chr2:62863165-62863184 MsG0280010016.01.T01:intron 35.0%
!! TGTCGGCACTTTTTATATCA+TGG + Chr2:62862447-62862466 MsG0280010016.01.T01:intron 35.0%
!!! AGTGTTGTTGCTGCTATTTT+TGG + Chr2:62860955-62860974 MsG0280010016.01.T01:intron 35.0%
!!! TGATTACTGGCATTTTTTGG+GGG + Chr2:62860851-62860870 MsG0280010016.01.T01:intron 35.0%
AAAACCTCAAGCAACAAGCA+TGG - Chr2:62860744-62860763 None:intergenic 40.0%
AAATGTGCAACAGCTTCTTC+AGG - Chr2:62864571-62864590 None:intergenic 40.0%
AACCTGAACTCTTCCAGAAA+TGG - Chr2:62864716-62864735 None:intergenic 40.0%
AGGTTTCAGCTCATCAAAGT+TGG - Chr2:62859318-62859337 None:intergenic 40.0%
ATACAGCACCACACATTCTA+AGG + Chr2:62862627-62862646 MsG0280010016.01.T01:CDS 40.0%
ATATACGTTGCCAATGTCCA+AGG - Chr2:62862557-62862576 None:intergenic 40.0%
ATTCTCTCCAGTGCCAATTT+AGG + Chr2:62863051-62863070 MsG0280010016.01.T01:intron 40.0%
CAAGAGGAATCATAGAGACT+TGG - Chr2:62863126-62863145 None:intergenic 40.0%
CAAGTCTCTATGATTCCTCT+TGG + Chr2:62863124-62863143 MsG0280010016.01.T01:intron 40.0%
CACTAAATTAGTCCCACATC+GGG + Chr2:62859922-62859941 MsG0280010016.01.T01:intron 40.0%
CAGTTAAGCAAATACTAGGG+AGG - Chr2:62864160-62864179 None:intergenic 40.0%
CCCTAACAGAAGAAATTCAG+AGG + Chr2:62863693-62863712 MsG0280010016.01.T01:CDS 40.0%
CGCTAACAACATACTTGTAC+GGG + Chr2:62859879-62859898 MsG0280010016.01.T01:intron 40.0%
CGTTGGACTATGATTCAACT+CGG - Chr2:62859348-62859367 None:intergenic 40.0%
GAAACTGATGTTTCATCACG+TGG + Chr2:62864043-62864062 MsG0280010016.01.T01:intron 40.0%
GAACCAACTCGACAATAGTT+CGG + Chr2:62859582-62859601 MsG0280010016.01.T01:intron 40.0%
GAAGAAGAAGATTAGGTAGC+GGG + Chr2:62863618-62863637 MsG0280010016.01.T01:CDS 40.0%
GACATTGGCAACGTATATAG+TGG + Chr2:62862559-62862578 MsG0280010016.01.T01:CDS 40.0%
GAGAATCACTTAAGATCCTG+CGG + Chr2:62862399-62862418 MsG0280010016.01.T01:CDS 40.0%
GAGTTGTCAATTGCAGATCA+TGG + Chr2:62863804-62863823 MsG0280010016.01.T01:intron 40.0%
GCACTAAATTAGTCCCACAT+CGG + Chr2:62859921-62859940 MsG0280010016.01.T01:intron 40.0%
GCTGATGGAAGAAGAAGATT+AGG + Chr2:62863611-62863630 MsG0280010016.01.T01:CDS 40.0%
GGAAGAAGAAGATTAGGTAG+CGG + Chr2:62863617-62863636 MsG0280010016.01.T01:CDS 40.0%
GTGGTGATAAATGCATTACC+AGG + Chr2:62864062-62864081 MsG0280010016.01.T01:intron 40.0%
GTTAAGAACACCTAAGAGCA+TGG + Chr2:62861797-62861816 MsG0280010016.01.T01:intron 40.0%
GTTGGATTCTTTCACCTCAT+TGG - Chr2:62859300-62859319 None:intergenic 40.0%
GTTGTTAAACTACCCGATGT+GGG - Chr2:62859937-62859956 None:intergenic 40.0%
TAGCAATGGGATATACTCGT+TGG - Chr2:62859365-62859384 None:intergenic 40.0%
TATACGTAACCCACTTGGAT+TGG + Chr2:62862971-62862990 MsG0280010016.01.T01:intron 40.0%
TCACAATGAGTGTTCGCATT+TGG - Chr2:62864400-62864419 None:intergenic 40.0%
TCATTCGTGTCGTCATTCTA+TGG + Chr2:62863743-62863762 MsG0280010016.01.T01:intron 40.0%
TCCCACAAAACCTAAAACAG+CGG - Chr2:62862531-62862550 None:intergenic 40.0%
TCTGCAATTGACAACTCAAG+TGG - Chr2:62863801-62863820 None:intergenic 40.0%
TGATTCAACTCGGCATTGTT+AGG - Chr2:62859338-62859357 None:intergenic 40.0%
TGTATGGCACATGCTCTTAA+TGG - Chr2:62862612-62862631 None:intergenic 40.0%
TGTGGAATACTTGAGGAACA+AGG + Chr2:62861004-62861023 MsG0280010016.01.T01:intron 40.0%
TGTTGTTAAACTACCCGATG+TGG - Chr2:62859938-62859957 None:intergenic 40.0%
TTCGTACTATGGCAAAATGC+AGG + Chr2:62860687-62860706 MsG0280010016.01.T01:intron 40.0%
TTGATGTTATTGGACTCGAC+TGG + Chr2:62863576-62863595 MsG0280010016.01.T01:CDS 40.0%
TTGCAGATCATGGAAAGTAG+CGG + Chr2:62863814-62863833 MsG0280010016.01.T01:intron 40.0%
TTGCTGCATGAGAATCAAGA+AGG - Chr2:62864743-62864762 None:intergenic 40.0%
TTTGTGACACAAAGGTGAGA+AGG - Chr2:62861680-62861699 None:intergenic 40.0%
! AAAACCATGCTTGTTGCTTG+AGG + Chr2:62860737-62860756 MsG0280010016.01.T01:intron 40.0%
! ATTCCTCTTGGTTAGTTGGT+TGG + Chr2:62863136-62863155 MsG0280010016.01.T01:intron 40.0%
! GGGGAAAAAGGTGAACTTTT+TGG + Chr2:62860870-62860889 MsG0280010016.01.T01:intron 40.0%
! TGCATTTTGCCATAGTACGA+AGG - Chr2:62860688-62860707 None:intergenic 40.0%
! TGGCAACGTATATAGTGGAA+GGG + Chr2:62862564-62862583 MsG0280010016.01.T01:CDS 40.0%
! TGTTTTCCAAGTGGAATCTG+GGG + Chr2:62862691-62862710 MsG0280010016.01.T01:CDS 40.0%
! TTGGCAACGTATATAGTGGA+AGG + Chr2:62862563-62862582 MsG0280010016.01.T01:CDS 40.0%
!! GAACTATTGTCGAGTTGGTT+CGG - Chr2:62859583-62859602 None:intergenic 40.0%
!! GACACTGGAGTTGATGTTAT+TGG + Chr2:62863566-62863585 MsG0280010016.01.T01:CDS 40.0%
!! GGCCAAAGTTTTGTATGACA+TGG + Chr2:62864328-62864347 MsG0280010016.01.T01:intron 40.0%
!! TTAGAATGTGTGGTGCTGTA+TGG - Chr2:62862628-62862647 None:intergenic 40.0%
!!! ATGGTTTTAAATTGCGGTCG+CGG + Chr2:62861816-62861835 MsG0280010016.01.T01:intron 40.0%
!!! GGTGAAGGAGTGTTTTCTTA+AGG + Chr2:62861139-62861158 MsG0280010016.01.T01:intron 40.0%
!!! GTTGTTGCTGCTATTTTTGG+AGG + Chr2:62860958-62860977 MsG0280010016.01.T01:intron 40.0%
!!! TGGCATTTTTTGGGGGAAAA+AGG + Chr2:62860858-62860877 MsG0280010016.01.T01:intron 40.0%
AGAGGGGAGAATAAAGAAGC+AGG - Chr2:62863668-62863687 None:intergenic 45.0%
AGCAAATGGGATGGTAGCAA+TGG - Chr2:62859379-62859398 None:intergenic 45.0%
AGCAGAGTCCTTAGAATGTG+TGG - Chr2:62862638-62862657 None:intergenic 45.0%
ATATAGTGGCTATGGCGTAG+CGG - Chr2:62863959-62863978 None:intergenic 45.0%
ATCATCAAGGAGAGTCGCTT+AGG - Chr2:62864011-62864030 None:intergenic 45.0%
ATGCAGAAAGGACATTCGCT+AGG - Chr2:62864093-62864112 None:intergenic 45.0%
CACATCCTTAATCTTGGGCA+TGG + Chr2:62864529-62864548 MsG0280010016.01.T01:CDS 45.0%
CACATTTCTTTGATGTCGCG+AGG + Chr2:62864584-62864603 MsG0280010016.01.T01:CDS 45.0%
CAGAAATGGCTTGAACTACC+AGG - Chr2:62864702-62864721 None:intergenic 45.0%
CAGCTCAAGTTCAGCTCATT+TGG - Chr2:62859649-62859668 None:intergenic 45.0%
CTGCGGCAAGAGGTAAAATT+CGG + Chr2:62862416-62862435 MsG0280010016.01.T01:intron 45.0%
CTGGTAGTTCAAGCCATTTC+TGG + Chr2:62864700-62864719 MsG0280010016.01.T01:three_prime_UTR 45.0%
CTTACACCTCTACCTGCATT+CGG + Chr2:62862263-62862282 MsG0280010016.01.T01:CDS 45.0%
CTTCTGTTAGGGCAGTAAGA+GGG - Chr2:62863685-62863704 None:intergenic 45.0%
GAACACCATGCCCAAGATTA+AGG - Chr2:62864537-62864556 None:intergenic 45.0%
GAGGGGAGAATAAAGAAGCA+GGG - Chr2:62863667-62863686 None:intergenic 45.0%
GATACACGCATCTTAGACAC+TGG - Chr2:62864132-62864151 None:intergenic 45.0%
GCAAATGGGATGGTAGCAAT+GGG - Chr2:62859378-62859397 None:intergenic 45.0%
GTTCCGAACTATTGTCGAGT+TGG - Chr2:62859588-62859607 None:intergenic 45.0%
TAAGCGTGCTTGTGACTTCA+AGG + Chr2:62863276-62863295 MsG0280010016.01.T01:intron 45.0%
TCAGGCCTAAAAGCTTTCCA+AGG - Chr2:62862218-62862237 None:intergenic 45.0%
TCTCCAGTGCCAATTTAGGT+GGG + Chr2:62863055-62863074 MsG0280010016.01.T01:intron 45.0%
TCTTCTGTTAGGGCAGTAAG+AGG - Chr2:62863686-62863705 None:intergenic 45.0%
TGTCTATCATACGCTCGAGA+AGG - Chr2:62863550-62863569 None:intergenic 45.0%
TGTTCACGAACAACTCGGTT+CGG - Chr2:62860216-62860235 None:intergenic 45.0%
TGTTGCGAACCTTCGTACTA+TGG + Chr2:62860676-62860695 MsG0280010016.01.T01:intron 45.0%
TTACACCTCTACCTGCATTC+GGG + Chr2:62862264-62862283 MsG0280010016.01.T01:CDS 45.0%
TTCTGTTAGGGCAGTAAGAG+GGG - Chr2:62863684-62863703 None:intergenic 45.0%
TTTGCGACACAAAGGTGAGA+AGG - Chr2:62861564-62861583 None:intergenic 45.0%
! AACTTTGGCCTTTCTGGCAA+AGG - Chr2:62864318-62864337 None:intergenic 45.0%
! AGCCATTTCTGGAAGAGTTC+AGG + Chr2:62864711-62864730 MsG0280010016.01.T01:three_prime_UTR 45.0%
! AGTGGTCTTAAAGACCGACT+AGG + Chr2:62860057-62860076 MsG0280010016.01.T01:intron 45.0%
! CGTATCGGTGACTGTATAAC+AGG - Chr2:62862320-62862339 None:intergenic 45.0%
! GCAACGTATATAGTGGAAGG+GGG + Chr2:62862566-62862585 MsG0280010016.01.T01:CDS 45.0%
! GGCAACGTATATAGTGGAAG+GGG + Chr2:62862565-62862584 MsG0280010016.01.T01:CDS 45.0%
! TGCAGCCTTGGAAAGCTTTT+AGG + Chr2:62862210-62862229 MsG0280010016.01.T01:CDS 45.0%
! TGGAAAGCTTTTAGGCCTGA+TGG + Chr2:62862218-62862237 MsG0280010016.01.T01:CDS 45.0%
!! AGAAGATTAGGTAGCGGGAT+TGG + Chr2:62863623-62863642 MsG0280010016.01.T01:CDS 45.0%
!! GTCGGTCTTTAAGACCACTA+AGG - Chr2:62860056-62860075 None:intergenic 45.0%
!! TGTATATAGTTCGACTCGGC+TGG + Chr2:62859707-62859726 MsG0280010016.01.T01:intron 45.0%
!! TTGTCACTTTCAGGGTTGTG+AGG + Chr2:62864488-62864507 MsG0280010016.01.T01:intron 45.0%
!!! GCCGCTGTTTTAGGTTTTGT+GGG + Chr2:62862527-62862546 MsG0280010016.01.T01:CDS 45.0%
!!! TGCCGCTGTTTTAGGTTTTG+TGG + Chr2:62862526-62862545 MsG0280010016.01.T01:CDS 45.0%
AACATCCATCCTTCCGAGAG+AGG + Chr2:62862153-62862172 MsG0280010016.01.T01:CDS 50.0%
AATCCCTCCTCAGAGCGTAT+CGG - Chr2:62862335-62862354 None:intergenic 50.0%
ACAACTGCCGCCTCATATGT+GGG + Chr2:62862748-62862767 MsG0280010016.01.T01:CDS 50.0%
ACTCGACTGGACAGTGGATA+TGG + Chr2:62863589-62863608 MsG0280010016.01.T01:CDS 50.0%
ACTTAAGATCCTGCGGCAAG+AGG + Chr2:62862406-62862425 MsG0280010016.01.T01:CDS 50.0%
ATGTGACCCTGCTGAGATAC+AGG + Chr2:62861963-62861982 MsG0280010016.01.T01:intron 50.0%
CAGAGTTCCCACATATGAGG+CGG - Chr2:62862758-62862777 None:intergenic 50.0%
CAGCCAACCAACTAACCAAG+AGG - Chr2:62863142-62863161 None:intergenic 50.0%
CCAGGAAAAGTGAGTACAGC+AGG - Chr2:62864684-62864703 None:intergenic 50.0%
CTCGAGCGTATGATAGACAC+TGG + Chr2:62863551-62863570 MsG0280010016.01.T01:CDS 50.0%
CTCGCAGCCTTAACCAAAAG+AGG - Chr2:62862050-62862069 None:intergenic 50.0%
CTCTCCAGTGCCAATTTAGG+TGG + Chr2:62863054-62863073 MsG0280010016.01.T01:intron 50.0%
CTCTTGCCTGTATCTCAGCA+GGG - Chr2:62861972-62861991 None:intergenic 50.0%
CTTGGGCATGGTGTTCTTGT+TGG + Chr2:62864541-62864560 MsG0280010016.01.T01:CDS 50.0%
GAATCGAACATGAGACCACG+AGG - Chr2:62863035-62863054 None:intergenic 50.0%
GACATTCGCTAGGAAGATCC+TGG - Chr2:62864083-62864102 None:intergenic 50.0%
GACCAGAGTTCCCACATATG+AGG - Chr2:62862761-62862780 None:intergenic 50.0%
GAGTCGCTTAGGAACTACTC+TGG - Chr2:62864000-62864019 None:intergenic 50.0%
GATTGGTGTGCAAGGAAACG+TGG + Chr2:62863640-62863659 MsG0280010016.01.T01:CDS 50.0%
GGAAAAGTGAGTACAGCAGG+TGG - Chr2:62864681-62864700 None:intergenic 50.0%
TAGCCATGTACCTTCCTGCT+TGG - Chr2:62862112-62862131 None:intergenic 50.0%
TAGCCCACCTAAATTGGCAC+TGG - Chr2:62863061-62863080 None:intergenic 50.0%
TATTGGACTCGACTGGACAG+TGG + Chr2:62863583-62863602 MsG0280010016.01.T01:CDS 50.0%
TCAAAGTCGATCCCGAATGC+AGG - Chr2:62862278-62862297 None:intergenic 50.0%
TCTCTTGCCTGTATCTCAGC+AGG - Chr2:62861973-62861992 None:intergenic 50.0%
TGGACAGTGGATATGGCTGA+TGG + Chr2:62863596-62863615 MsG0280010016.01.T01:CDS 50.0%
! CGAATGCAGGTAGAGGTGTA+AGG - Chr2:62862265-62862284 None:intergenic 50.0%
! CGAATTTTACCTCTTGCCGC+AGG - Chr2:62862418-62862437 None:intergenic 50.0%
! CTCTTGGTTAGTTGGTTGGC+TGG + Chr2:62863140-62863159 MsG0280010016.01.T01:intron 50.0%
!! ACGCTCTGAGGAGGGATTAA+AGG + Chr2:62862337-62862356 MsG0280010016.01.T01:CDS 50.0%
!! CCTGCTGTACTCACTTTTCC+TGG + Chr2:62864681-62864700 MsG0280010016.01.T01:three_prime_UTR 50.0%
!! CTTTTGGTTAAGGCTGCGAG+AGG + Chr2:62862050-62862069 MsG0280010016.01.T01:CDS 50.0%
!! GTGGTATTGACTTGGGACCT+GGG + Chr2:62862998-62863017 MsG0280010016.01.T01:intron 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG + Chr2:62862991-62863010 MsG0280010016.01.T01:intron 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG + Chr2:62862990-62863009 MsG0280010016.01.T01:intron 50.0%
!!! TAGGTTTTGTGGGAGCACCT+TGG + Chr2:62862537-62862556 MsG0280010016.01.T01:CDS 50.0%
ACAGTCACCGATACGCTCTG+AGG + Chr2:62862325-62862344 MsG0280010016.01.T01:CDS 55.0%
ACCACCAGGCCAATCCAAGT+GGG - Chr2:62862983-62863002 None:intergenic 55.0%
AGATCCTGTTAGCCGTCCTC+CGG + Chr2:62862073-62862092 MsG0280010016.01.T01:CDS 55.0%
AGTGAGCCCCAGATTCCACT+TGG - Chr2:62862700-62862719 None:intergenic 55.0%
CAGTCGTCTCTGACCTCTCT+CGG - Chr2:62862169-62862188 None:intergenic 55.0%
CGCCTCATATGTGGGAACTC+TGG + Chr2:62862756-62862775 MsG0280010016.01.T01:CDS 55.0%
GACAACTGCCGCCTCATATG+TGG + Chr2:62862747-62862766 MsG0280010016.01.T01:CDS 55.0%
GAGTCGAGCTCAGACGAGTT+CGG + Chr2:62860319-62860338 MsG0280010016.01.T01:CDS 55.0%
GGTCCCAAGTCAATACCACC+AGG - Chr2:62862997-62863016 None:intergenic 55.0%
TACCACCAGGCCAATCCAAG+TGG - Chr2:62862984-62863003 None:intergenic 55.0%
TCGAACATGAGACCACGAGG+AGG - Chr2:62863032-62863051 None:intergenic 55.0%
TCGATCCCGAATGCAGGTAG+AGG - Chr2:62862272-62862291 None:intergenic 55.0%
TCTGACCTCTCTCGGAAGGA+TGG - Chr2:62862161-62862180 None:intergenic 55.0%
TTCAGGGTTGTGAGGTCTGC+AGG + Chr2:62864496-62864515 MsG0280010016.01.T01:intron 55.0%
! GGTTAGTTGGTTGGCTGGCT+GGG + Chr2:62863145-62863164 MsG0280010016.01.T01:intron 55.0%
! TGGTTAGTTGGTTGGCTGGC+TGG + Chr2:62863144-62863163 MsG0280010016.01.T01:intron 55.0%
!! ACAACTCGGTTCGGCTCGTT+AGG - Chr2:62860207-62860226 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+TGG + Chr2:62862997-62863016 MsG0280010016.01.T01:intron 55.0%
!! GGTGGTGATGCCGCTGTTTT+AGG + Chr2:62862518-62862537 MsG0280010016.01.T01:CDS 55.0%
!! GTAACCCACTTGGATTGGCC+TGG + Chr2:62862976-62862995 MsG0280010016.01.T01:intron 55.0%
!! TCACCGATACGCTCTGAGGA+GGG + Chr2:62862329-62862348 MsG0280010016.01.T01:CDS 55.0%
!! TGTGGGAGCACCTTGGACAT+TGG + Chr2:62862544-62862563 MsG0280010016.01.T01:CDS 55.0%
CGTCTCTGACCTCTCTCGGA+AGG - Chr2:62862165-62862184 None:intergenic 60.0%
CTTGGGCGCCTTTGCCAGAA+AGG + Chr2:62864307-62864326 MsG0280010016.01.T01:intron 60.0%
GCATCATCCATGCCGGAGGA+CGG - Chr2:62862088-62862107 None:intergenic 60.0%
GCATGGATGATGCGCCAAGC+AGG + Chr2:62862095-62862114 MsG0280010016.01.T01:CDS 60.0%
GCTTGGCGCATCATCCATGC+CGG - Chr2:62862095-62862114 None:intergenic 60.0%
GGATGATGCGCCAAGCAGGA+AGG + Chr2:62862099-62862118 MsG0280010016.01.T01:CDS 60.0%
! AGTTGGTTGGCTGGCTGGGT+TGG + Chr2:62863149-62863168 MsG0280010016.01.T01:intron 60.0%
! GCGCCAAGCAGGAAGGTACA+TGG + Chr2:62862106-62862125 MsG0280010016.01.T01:CDS 60.0%
!! ACCCACTTGGATTGGCCTGG+TGG + Chr2:62862979-62862998 MsG0280010016.01.T01:intron 60.0%
!! GGTAGCGGGATTGGTGTGCA+AGG + Chr2:62863632-62863651 MsG0280010016.01.T01:CDS 60.0%
!! GTCACCGATACGCTCTGAGG+AGG + Chr2:62862328-62862347 MsG0280010016.01.T01:CDS 60.0%
CATGCCGGAGGACGGCTAAC+AGG - Chr2:62862080-62862099 None:intergenic 65.0%
CTGTTAGCCGTCCTCCGGCA+TGG + Chr2:62862078-62862097 MsG0280010016.01.T01:CDS 65.0%
TGGCGCATCATCCATGCCGG+AGG - Chr2:62862092-62862111 None:intergenic 65.0%
! ACGAGGAGGAGCACACTCCC+AGG - Chr2:62863018-62863037 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+TGG + Chr2:62863017-62863036 MsG0280010016.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 62859263 62864922 62859263 ID=MsG0280010016.01;Name=MsG0280010016.01
Chr2 mRNA 62859263 62864922 62859263 ID=MsG0280010016.01.T01;Parent=MsG0280010016.01;Name=MsG0280010016.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0.6|0.66|1|1|1|6|265|431
Chr2 exon 62859263 62859368 62859263 ID=MsG0280010016.01.T01:exon:4750;Parent=MsG0280010016.01.T01
Chr2 exon 62860267 62860395 62860267 ID=MsG0280010016.01.T01:exon:4751;Parent=MsG0280010016.01.T01
Chr2 exon 62862045 62862427 62862045 ID=MsG0280010016.01.T01:exon:4752;Parent=MsG0280010016.01.T01
Chr2 exon 62862515 62862799 62862515 ID=MsG0280010016.01.T01:exon:4753;Parent=MsG0280010016.01.T01
Chr2 exon 62863479 62863714 62863479 ID=MsG0280010016.01.T01:exon:4754;Parent=MsG0280010016.01.T01
Chr2 exon 62864501 62864922 62864501 ID=MsG0280010016.01.T01:exon:4755;Parent=MsG0280010016.01.T01
Chr2 CDS 62859263 62859368 62859263 ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2 CDS 62860267 62860395 62860267 ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2 CDS 62862045 62862427 62862045 ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2 CDS 62862515 62862799 62862515 ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2 CDS 62863479 62863714 62863479 ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2 CDS 62864501 62864657 62864501 ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2 three_prime_UTR 62864658 62864922 62864658 ID=MsG0280010016.01.T01:three_prime_utr;Parent=MsG0280010016.01.T01
Gene Sequence

>MsG0280010016.01.T01

ATGAACAATCCCATCATCGCAAGTTTCTATGAAGCCAATGAGGTGAAAGAATCCAACTTTGATGAGCTGAAACCTAACAATGCCGAGTTGAATCATAGTCCAACGAGTTCGTATCGAACTCGAGTCGAGTTTCGAGCTGAGCTGATTCTTATCGAGTTGAGTCGAGCTCAGACGAGTTCGGTTCGACTCGACTCATTTCCAACCCTAATTGAAATTGAAGCAATAAAGGAAAACTATCCTCTTTTGGTTAAGGCTGCGAGAGGAGATCCTGTTAGCCGTCCTCCGGCATGGATGATGCGCCAAGCAGGAAGGTACATGGCTATTTACAGAAAGTTAGCTGAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACGACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTTAGGCCTGATGGAGTAATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTCGGGATCGACTTTGACATAGAAGATGTGAGGGGACCTGTTATACAGTCACCGATACGCTCTGAGGAGGGATTAAAGGTTTTACACCCGATTGACTTTGACAAGCTTAGTTTTGTAGGAGAATCACTTAAGATCCTGCGGCAAGAGGTTGGTGGTGATGCCGCTGTTTTAGGTTTTGTGGGAGCACCTTGGACATTGGCAACGTATATAGTGGAAGGGGGTACGACACGTACATATACAACCATTAAGAGCATGTGCCATACAGCACCACACATTCTAAGGACTCTGCTTTCTCATTTGTCAAAGGCGATAGCAGATTACATTGTTTTCCAAGTGGAATCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTGCCGCCTCATATGTGGGAACTCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAGTGCCCAGATACACCACTTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGATAGACACTGGAGTTGATGTTATTGGACTCGACTGGACAGTGGATATGGCTGATGGAAGAAGAAGATTAGGTAGCGGGATTGGTGTGCAAGGAAACGTGGACCCTGCTTCTTTATTCTCCCCTCTTACTGCCCTAACAGAAGAAATTCAGAGGGTTGTGAGGTCTGCAGGACCTAGACAACACATCCTTAATCTTGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGATGTCGCGAGGAGCTTGAAGTTTGACACTCTCTCTCAAAATAACACTGCAAATGTAGCTTAA

Protein sequence

>MsG0280010016.01.T01

MNNPIIASFYEANEVKESNFDELKPNNAELNHSPTSSYRTRVEFRAELILIELSRAQTSSVRLDSFPTLIEIEAIKENYPLLVKAARGDPVSRPPAWMMRQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLSFVGESLKILRQEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPHILRTLLSHLSKAIADYIVFQVESGAHCIQIFDSWGGQLPPHMWELWSKPYIKEIVNLVKKKCPDTPLVLYINGNGGLLERMIDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLTALTEEIQRVVRSAGPRQHILNLGHGVLVGTPEEAVAHFFDVARSLKFDTLSQNNTANVA*