AlfalfaGEDB | MsG0280010016.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010016.01

KEGG: K01599
GO: GO:0004853 GO:0006779
PFAM: PF01208

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010016.01.T01	XP_039686627.1	98.295	352	6	0	80	431	57	408	0	722

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010016.01.T01	Q93ZB6	80.98	347	66	0	80	426	60	406	0	603

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010016.01.T01	G7IH45	98.295	352	6	0	80	431	56	407	0.0	721

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0280010016.01	0.856611	2.862356e-62	6.871266e-59
MsG0080047945.01	MsG0280010016.01	0.848250	6.909967e-60	1.260315e-56
MsG0080047955.01	MsG0280010016.01	0.872229	3.733034e-67	1.550041e-63
MsG0080047956.01	MsG0280010016.01	0.871183	8.296485e-67	3.315665e-63
MsG0080048059.01	MsG0280010016.01	0.854448	1.222429e-61	2.730839e-58
MsG0080048068.01	MsG0280010016.01	0.828202	1.025161e-54	1.012005e-51
MsG0080048528.01	MsG0280010016.01	0.874427	6.811482e-68	3.065325e-64
MsG0080048611.01	MsG0280010016.01	0.832127	1.128619e-55	1.249851e-52
MsG0080048776.01	MsG0280010016.01	0.900430	7.385689e-78	9.550520e-74
MsG0080048777.01	MsG0280010016.01	0.906395	1.554076e-80	2.627529e-76

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010016.01.T01	MTR_2g076340	98.295	352	6	0	80	431	56	407	0.0	721
MsG0280010016.01.T01	MTR_3g072330	56.012	341	149	1	80	419	49	389	1.98e-137	399

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010016.01.T01	AT3G14930	80.980	347	66	0	80	426	60	406	0.0	603
MsG0280010016.01.T01	AT3G14930	80.980	347	66	0	80	426	60	406	0.0	603
MsG0280010016.01.T01	AT3G14930	81.155	329	62	0	98	426	1	329	0.0	572
MsG0280010016.01.T01	AT2G40490	52.691	353	166	1	68	419	42	394	1.33e-134	392

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Find 122 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAACAAGTGGTGTATCT+GGG	0.541095	2:-62863505	None:intergenic
AAATGTGCAACAGCTTCTTC+AGG	0.457455	2:-62864568	None:intergenic
AACATCCATCCTTCCGAGAG+AGG	0.577108	2:+62862153	MsG0280010016.01.T01:CDS
AACCTGAACTCTTCCAGAAA+TGG	0.413215	2:-62864713	None:intergenic
AAGTTTCTATGAAGCCAATG+AGG	0.674069	2:+62859283	MsG0280010016.01.T01:CDS
AATCCCTCCTCAGAGCGTAT+CGG	0.581435	2:-62862332	None:intergenic
AATTGAAATTGAAGCAATAA+AGG	0.376534	2:+62860367	MsG0280010016.01.T01:CDS
ACAACTGCCGCCTCATATGT+GGG	0.588080	2:+62862748	MsG0280010016.01.T01:CDS
ACAGTCACCGATACGCTCTG+AGG	0.696424	2:+62862325	MsG0280010016.01.T01:CDS
ACCTCTGAATTTCTTCTGTT+AGG	0.334578	2:-62863694	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACATCAGTTTCTCATTATG+TGG	-	Chr2:62864035-62864054	None:intergenic	30.0%
AACCCCTTACTCATATTTAT+TGG	-	Chr2:62861324-62861343	None:intergenic	30.0%
AATGGTTACTTGCTTAATTC+TGG	+	Chr2:62861118-62861137	MsG0280010016.01.T01:intron	30.0%
ACTATGTGGTAAGAATCAAA+AGG	+	Chr2:62860916-62860935	MsG0280010016.01.T01:intron	30.0%
AGTACAATGTGTTCAAATAG+TGG	-	Chr2:62863882-62863901	None:intergenic	30.0%
AGTCAGTTAAGCAAATACTA+GGG	-	Chr2:62864163-62864182	None:intergenic	30.0%
ATAATGAAGGCTCTTTCTAA+TGG	+	Chr2:62861100-62861119	MsG0280010016.01.T01:intron	30.0%
ATGTTGTCAATTGCATATAG+TGG	-	Chr2:62863973-62863992	None:intergenic	30.0%
CAGAAATGAAAGGATAATGA+AGG	-	Chr2:62861931-62861950	None:intergenic	30.0%
CTATGTGGTAAGAATCAAAA+GGG	+	Chr2:62860917-62860936	MsG0280010016.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	62859263	62864922	62859263	ID=MsG0280010016.01;Name=MsG0280010016.01
Chr2	mRNA	62859263	62864922	62859263	ID=MsG0280010016.01.T01;Parent=MsG0280010016.01;Name=MsG0280010016.01.T01;_AED=0.50;_eAED=0.50;_QI=0\|0.6\|0.66\|1\|1\|1\|6\|265\|431
Chr2	exon	62859263	62859368	62859263	ID=MsG0280010016.01.T01:exon:4750;Parent=MsG0280010016.01.T01
Chr2	exon	62860267	62860395	62860267	ID=MsG0280010016.01.T01:exon:4751;Parent=MsG0280010016.01.T01
Chr2	exon	62862045	62862427	62862045	ID=MsG0280010016.01.T01:exon:4752;Parent=MsG0280010016.01.T01
Chr2	exon	62862515	62862799	62862515	ID=MsG0280010016.01.T01:exon:4753;Parent=MsG0280010016.01.T01
Chr2	exon	62863479	62863714	62863479	ID=MsG0280010016.01.T01:exon:4754;Parent=MsG0280010016.01.T01
Chr2	exon	62864501	62864922	62864501	ID=MsG0280010016.01.T01:exon:4755;Parent=MsG0280010016.01.T01
Chr2	CDS	62859263	62859368	62859263	ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2	CDS	62860267	62860395	62860267	ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2	CDS	62862045	62862427	62862045	ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2	CDS	62862515	62862799	62862515	ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2	CDS	62863479	62863714	62863479	ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2	CDS	62864501	62864657	62864501	ID=MsG0280010016.01.T01:cds;Parent=MsG0280010016.01.T01
Chr2	three_prime_UTR	62864658	62864922	62864658	ID=MsG0280010016.01.T01:three_prime_utr;Parent=MsG0280010016.01.T01

Gene Sequence

>MsG0280010016.01.T01

ATGAACAATCCCATCATCGCAAGTTTCTATGAAGCCAATGAGGTGAAAGAATCCAACTTTGATGAGCTGAAACCTAACAATGCCGAGTTGAATCATAGTCCAACGAGTTCGTATCGAACTCGAGTCGAGTTTCGAGCTGAGCTGATTCTTATCGAGTTGAGTCGAGCTCAGACGAGTTCGGTTCGACTCGACTCATTTCCAACCCTAATTGAAATTGAAGCAATAAAGGAAAACTATCCTCTTTTGGTTAAGGCTGCGAGAGGAGATCCTGTTAGCCGTCCTCCGGCATGGATGATGCGCCAAGCAGGAAGGTACATGGCTATTTACAGAAAGTTAGCTGAGAAACATCCATCCTTCCGAGAGAGGTCAGAGACGACTGATCTCATTGTAGAAATTTCTTTGCAGCCTTGGAAAGCTTTTAGGCCTGATGGAGTAATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTCGGGATCGACTTTGACATAGAAGATGTGAGGGGACCTGTTATACAGTCACCGATACGCTCTGAGGAGGGATTAAAGGTTTTACACCCGATTGACTTTGACAAGCTTAGTTTTGTAGGAGAATCACTTAAGATCCTGCGGCAAGAGGTTGGTGGTGATGCCGCTGTTTTAGGTTTTGTGGGAGCACCTTGGACATTGGCAACGTATATAGTGGAAGGGGGTACGACACGTACATATACAACCATTAAGAGCATGTGCCATACAGCACCACACATTCTAAGGACTCTGCTTTCTCATTTGTCAAAGGCGATAGCAGATTACATTGTTTTCCAAGTGGAATCTGGGGCTCACTGCATACAAATATTTGATTCATGGGGTGGACAACTGCCGCCTCATATGTGGGAACTCTGGTCAAAGCCTTATATCAAAGAGATTGTAAATTTGGTCAAGAAAAAGTGCCCAGATACACCACTTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCGTATGATAGACACTGGAGTTGATGTTATTGGACTCGACTGGACAGTGGATATGGCTGATGGAAGAAGAAGATTAGGTAGCGGGATTGGTGTGCAAGGAAACGTGGACCCTGCTTCTTTATTCTCCCCTCTTACTGCCCTAACAGAAGAAATTCAGAGGGTTGTGAGGTCTGCAGGACCTAGACAACACATCCTTAATCTTGGGCATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGATGTCGCGAGGAGCTTGAAGTTTGACACTCTCTCTCAAAATAACACTGCAAATGTAGCTTAA

Protein sequence

>MsG0280010016.01.T01

MNNPIIASFYEANEVKESNFDELKPNNAELNHSPTSSYRTRVEFRAELILIELSRAQTSSVRLDSFPTLIEIEAIKENYPLLVKAARGDPVSRPPAWMMRQAGRYMAIYRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIDFDIEDVRGPVIQSPIRSEEGLKVLHPIDFDKLSFVGESLKILRQEVGGDAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPHILRTLLSHLSKAIADYIVFQVESGAHCIQIFDSWGGQLPPHMWELWSKPYIKEIVNLVKKKCPDTPLVLYINGNGGLLERMIDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPASLFSPLTALTEEIQRVVRSAGPRQHILNLGHGVLVGTPEEAVAHFFDVARSLKFDTLSQNNTANVA*