AlfalfaGEDB | MsG0280010785.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010785.01

KEGG: -
GO: GO:0004672 GO:0005515 GO:0005524 GO:0006468
PFAM: PF00069 PF08263 PF13855

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010785.01.T01	XP_013465156.1	95.487	975	44	0	19	993	19	993	0	1873

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010785.01.T01	Q9SGP2	58.384	990	384	13	19	988	11	992	0	1110

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010785.01.T01	A0A072VC59	95.487	975	44	0	19	993	19	993	0.0	1873

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000360.01	MsG0280010785.01	0.845114	4.969676e-59	8.195662e-56
MsG0180000373.01	MsG0280010785.01	0.840511	8.320044e-58	1.187879e-54
MsG0180001104.01	MsG0280010785.01	0.811727	6.057795e-51	3.778601e-48
MsG0180001565.01	MsG0280010785.01	0.837049	6.537410e-57	8.391350e-54
MsG0180004147.01	MsG0280010785.01	0.804821	1.797166e-49	9.358919e-47
MsG0180004258.01	MsG0280010785.01	0.806261	8.961718e-50	4.842558e-47
MsG0180004357.01	MsG0280010785.01	0.813502	2.478572e-51	1.621467e-48
MsG0180005692.01	MsG0280010785.01	0.832763	7.850956e-56	8.860641e-53
MsG0180006023.01	MsG0280010785.01	0.824545	7.618427e-54	6.769173e-51
MsG0180006260.01	MsG0280010785.01	0.823602	1.268122e-53	1.096984e-50

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PPI

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Gene1	Gene2	Type
MsG0380017690.01	MsG0280010785.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0280010785.01.T01	MTR_2g090710	95.487	975	44	0	19	993	19	993	1873
MsG0280010785.01.T01	MTR_4g088320	60.362	994	378	11	6	988	7	995	1136
MsG0280010785.01.T01	MTR_2g014560	59.490	980	378	13	22	990	18	989	1069
MsG0280010785.01.T01	MTR_5g014720	43.529	1020	497	21	2	965	1	997	752
MsG0280010785.01.T01	MTR_3g110860	41.176	986	503	19	20	967	17	963	659
MsG0280010785.01.T01	MTR_2g010470	40.872	986	532	18	3	973	23	972	652
MsG0280010785.01.T01	MTR_6g088790	39.898	980	554	15	5	964	13	977	645
MsG0280010785.01.T01	MTR_1g069470	40.854	984	531	23	24	976	24	987	637
MsG0280010785.01.T01	MTR_1g080440	39.469	1016	553	22	1	975	1	995	624
MsG0280010785.01.T01	MTR_3g110450	39.623	1007	546	20	6	973	11	994	618

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0280010785.01.T01	AT1G28440	58.384	990	384	13	19	988	11	992	1110
MsG0280010785.01.T01	AT4G28490	57.782	983	392	13	19	983	17	994	1032
MsG0280010785.01.T01	AT5G65710	45.829	971	469	21	34	965	36	988	738
MsG0280010785.01.T01	AT1G09970	40.783	971	527	18	11	966	17	954	642
MsG0280010785.01.T01	AT5G25930	41.250	960	517	20	30	965	30	966	638
MsG0280010785.01.T01	AT1G09970	40.741	972	527	19	11	966	17	955	638
MsG0280010785.01.T01	AT4G28650	40.941	999	543	21	7	974	5	987	632
MsG0280010785.01.T01	AT3G19700	39.181	1026	550	25	1	991	1	987	614
MsG0280010785.01.T01	AT1G72180	39.232	989	532	18	8	970	20	965	608
MsG0280010785.01.T01	AT5G49660	39.099	977	500	19	21	967	26	937	605

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Find 272 sgRNAs with CRISPR-Local

Find 308 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGAGCATGATGAATAA+TGG	0.421588	2:-75058628	None:intergenic
AAACAGTTTCCAAGACTTGC+CGG	0.398677	2:-75059810	None:intergenic
AAACTTGCTATAACAAGTTC+TGG	0.346052	2:-75059372	None:intergenic
AAAGGTCGAGTTCTTGGATA+GGG	0.553575	2:-75059032	None:intergenic
AAATCAGCCAAACTTCCATT+TGG	0.446054	2:-75060929	None:intergenic
AAATCTTGATTCTAAATACA+AGG	0.561660	2:+75061524	MsG0280010785.01.T01:CDS
AAATGTTGAGGATCCTGAAA+AGG	0.585135	2:+75060793	MsG0280010785.01.T01:CDS
AAATTTGATAATCCTAAACG+TGG	0.729629	2:-75059447	None:intergenic
AAGAAAATTAAGAGCTGGCA+AGG	0.529112	2:-75060258	None:intergenic
AAGAAGGTATTGTTCCGGGG+AGG	0.687062	2:-75059212	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGTGACATTTATAGCTT+TGG	+	Chr2:75061378-75061397	MsG0280010785.01.T01:CDS	30.0%
AGAGTATGGAGAAAAAGATT+TGG	+	Chr2:75061446-75061465	MsG0280010785.01.T01:CDS	30.0%
AGATCAAGAAAATTAAGAGC+TGG	-	Chr2:75060266-75060285	None:intergenic	30.0%
AGGTTCATATTTGTACTTAC+TGG	+	Chr2:75060512-75060531	MsG0280010785.01.T01:CDS	30.0%
ATCTTACTAGATGGAGAATT+TGG	+	Chr2:75061088-75061107	MsG0280010785.01.T01:CDS	30.0%
CAGAATATGCTTATACTCTT+AGG	+	Chr2:75061346-75061365	MsG0280010785.01.T01:intron	30.0%
CCTATTTCCAATTCAATATC+AGG	+	Chr2:75059948-75059967	MsG0280010785.01.T01:CDS	30.0%
CCTGATATTGAATTGGAAAT+AGG	-	Chr2:75059951-75059970	None:intergenic	30.0%
CTTGTAGAAAATTCACTTTC+TGG	+	Chr2:75059924-75059943	MsG0280010785.01.T01:CDS	30.0%
GAAGCTTAATGATCTTGATT+TGG	+	Chr2:75060193-75060212	MsG0280010785.01.T01:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75058619	75061731	75058619	ID=MsG0280010785.01;Name=MsG0280010785.01
Chr2	mRNA	75058619	75061731	75058619	ID=MsG0280010785.01.T01;Parent=MsG0280010785.01;Name=MsG0280010785.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|0\|0\|1\|1\|1\|2\|0\|993
Chr2	exon	75058619	75061217	75058619	ID=MsG0280010785.01.T01:exon:27690;Parent=MsG0280010785.01.T01
Chr2	exon	75061349	75061731	75061349	ID=MsG0280010785.01.T01:exon:27691;Parent=MsG0280010785.01.T01
Chr2	CDS	75058619	75061217	75058619	ID=MsG0280010785.01.T01:cds;Parent=MsG0280010785.01.T01
Chr2	CDS	75061349	75061731	75061349	ID=MsG0280010785.01.T01:cds;Parent=MsG0280010785.01.T01

Gene Sequence

>MsG0280010785.01.T01

ATGGTTGAACCATTATTCATCATGCTCCTTTTTCTCTTTCTCTCCCTAATCTCTCCCACACTCTCTCTCAACCAAGAAGGTCTCTTCCTCCTCCAAGCCAAACTCCATCTCTCTGATCCCTCCAACACTCTCTCCAACTGGAACCCTAACGACTCATCTCCGTGCAACTGGACCGGCATCCTTTGCAACAATCTCACAAACTCAGTCACCTCCATCAACCTCCCTAACTCCGATCTCTCCGGTCCTTTCCCCGTCTCCCTCTGCCGTCTCCCTCATCTCTCCCATCTCTCCCTCCCCAACAACAACCTTAACTCCACTCTCCCCACCACCATCTCCACTTGCACCACTCTCCGCCATCTTAACCTCTCCCTCAACCTTTTCTCCGGCAATATCCCTCACACTCTCTCTGACCTCCCTATCCAAGAACTCGACCTTTCCTTCAACAACTTCTCCGGCAACATCCCACAATCCTTCAGCAACTTCCAACAACTCCAAACAATCTCCCTCGTCAACAACCTCTTGACCGGAACAATACCTTCCTCTCTAAGCAATGTTTCATCTCTTAAGCACCTTCATCTCGCTTACAACAACTTCCTCCCCGGAACAATACCTTCTTCTCTCGGAAACCTCACCAACCTTGAAACTCTATGGCTTGCTGGTTGCAACCTTGTTGGTCCTATTCCAAATTCTTTTCGAAAACTTGTTCATCTTAAGAATCTTGATTTGTCCCGGAACATGCTCAACGGAACTATACCAGAACTTGTTATAGCAAGTTTAACCAGCATTGTTCAACTTGAGCTTTACACAAACTCTTTCTCCGGCGCGCTACCACGTTTAGGATTATCAAATTTGACTCGTTTGGAAAGATTTGATGCTTCGGATAACGAGTTAACTGGGACTATTCCTGATGAGTTGTGTAGTTTGAAGAATCTGGGGTCTCTTGGTTTGTACTATAACCGACTCGAGGGTTCTCTGCCGGAGAGTTTAGCGTCGTCGGAGAGTTTATACGAGCTTCTTTTGTTCAACAACACACTCTCAGGGAAGTTGCCGAGTGGTTTGGGAAGTAACTCAAGGTTGCAGTTGATTGATGTTTCGTTTAATCGTTTTTCCGGCGAGATTCCGGCAGGTTTGTGTCGGCAGGGAAGGTTAGAGGAGTTGTTATTGATTAATAATTTGTTTTCCGGGGAAATTCCGGCAAGTCTTGGAAACTGTTTGAGCTTAACAAGAGTTAGACTTGGGAACAATAATCTCTCTGGTGTTGTTCCTTCTGGTTTTTGGGGTTTGCCTCATGTGTATCTACTTGAGCTTGTAGAAAATTCACTTTCTGGGCCTATTTCCAATTCAATATCAGGAGCCAGTAATCTTTCAATTTTGTTGATTTCTGGGAATAGGATTAATGGATCAATTCCTGATTCAATTGGGTCATTGTCCAATCTTGGAGAGTTTGTTGCTAGCAGTAATAGTCTTACCGGTCCAATTCCGACCGGTATGGTTAAATTAAGCCAGTTGAATAGGCTTGTTCTTAGGGATAATCAATTTTCTGGTGAGATTCCTCATGGTGTTGGTGATTGGAAGAAGCTTAATGATCTTGATTTGGCTAATAATAGGATTGTTGGTAATATTCCTAGTGAATTAGGAACCTTGCCAGCTCTTAATTTTCTTGATCTTTCTGGTAATTTACTTTCTGGTGAAATTCCAATGGAGTTGCAGAATTTGAAGCTTGATTTTTTTAACTTGTCAAATAATCAGCTTTCTGGAGAAATTCCTCCTCTTTATGCTAATGAGAATTATAGGGATAGTTTTGTAGGAAATATTGGTCTCTGTGGCGATATCTCTGGATTGTGTCCAAATTTGGGTGAGAAAGATAAGAATAGGAGCTATGTGTGGGTTTTCAGGTTCATATTTGTACTTACTGGTGCTGTGTTAATTGTTGGGTTGACATGGTTTTACCTCAAATTCCAGAATTTCAAGAAGATGAAGAAAGGATTCAGTATACCGAAGTGGAGGTCGTTTCATAAACTAGGCTTTAGCGAGTTTGAGATTGTTAAATTGATGAGTGAAGATAACGTGATAGGCAGCGGATCTTCTGGGAAGGTTTACAAAGTGGTGTTGAGTAATGGAGAGGCAGTGGCAGTGAAGAAATTGTGGGGAGCAGCAACTAAGATAGAAAGTGGAAATGTTGAGGATCCTGAAAAGGATGAATTTGAAGTTGAAGTTGAAACATTGGGAAAGATTAGGCACAAGAATATTGTAAGGTTATGGTGTTGTTATAACAGTGGAGATAGTAAACTCTTAGTTTATGAGTACATGCCAAATGGAAGTTTGGCTGATTTGTTGCATAGTAGCAAGAAAAACTTGTTGGATTGGCCAACTAGACTTAAAATTGCTGTTGATGCTGCTGAGGGACTTTCTTATTTGCATCATGATTGTATTGTTCCTATTGTTCATAGGGATGTAAAATCTAGTAATATCTTACTAGATGGAGAATTTGGTGCAAAAATTGCTGATTTTGGTGTTGCTAAATTTGTTAGAAATGTTAGCAAAGGGACAGAAGAACCCATGTCAATGATTGCAGGATCTTGTGGTTACATTGCACCAGAATATGCTTATACTCTTAGGGTGAATGAAAAGAGTGACATTTATAGCTTTGGAGTAGTGATTTTGGAGTTAGTAACTGGAAAACACCCTATTGATCAAGAGTATGGAGAAAAAGATTTGGTAAAATGGGTTTCTTCCAAATTGAATGAGGAAGGTCAAGATCAAGTGATTGATCCAAATCTTGATTCTAAATACAAGGAAGAAATAAGCAAAGTACTCAAGGTGGGGATTCTTTGCACAAGCTCTCTTCCCATAAACCGTCCTTCAATGCGCAGAGTGGTGAATATGCTGCAGGAAGTAACAGCAGTTATCAAGTCCAGAAGTGGAAAATTTTCTCCTTACTATCAAGAAGTAGTCTCTAATAATGATCATTTAGAAGCATAG

Protein sequence

>MsG0280010785.01.T01

MVEPLFIMLLFLFLSLISPTLSLNQEGLFLLQAKLHLSDPSNTLSNWNPNDSSPCNWTGILCNNLTNSVTSINLPNSDLSGPFPVSLCRLPHLSHLSLPNNNLNSTLPTTISTCTTLRHLNLSLNLFSGNIPHTLSDLPIQELDLSFNNFSGNIPQSFSNFQQLQTISLVNNLLTGTIPSSLSNVSSLKHLHLAYNNFLPGTIPSSLGNLTNLETLWLAGCNLVGPIPNSFRKLVHLKNLDLSRNMLNGTIPELVIASLTSIVQLELYTNSFSGALPRLGLSNLTRLERFDASDNELTGTIPDELCSLKNLGSLGLYYNRLEGSLPESLASSESLYELLLFNNTLSGKLPSGLGSNSRLQLIDVSFNRFSGEIPAGLCRQGRLEELLLINNLFSGEIPASLGNCLSLTRVRLGNNNLSGVVPSGFWGLPHVYLLELVENSLSGPISNSISGASNLSILLISGNRINGSIPDSIGSLSNLGEFVASSNSLTGPIPTGMVKLSQLNRLVLRDNQFSGEIPHGVGDWKKLNDLDLANNRIVGNIPSELGTLPALNFLDLSGNLLSGEIPMELQNLKLDFFNLSNNQLSGEIPPLYANENYRDSFVGNIGLCGDISGLCPNLGEKDKNRSYVWVFRFIFVLTGAVLIVGLTWFYLKFQNFKKMKKGFSIPKWRSFHKLGFSEFEIVKLMSEDNVIGSGSSGKVYKVVLSNGEAVAVKKLWGAATKIESGNVEDPEKDEFEVEVETLGKIRHKNIVRLWCCYNSGDSKLLVYEYMPNGSLADLLHSSKKNLLDWPTRLKIAVDAAEGLSYLHHDCIVPIVHRDVKSSNILLDGEFGAKIADFGVAKFVRNVSKGTEEPMSMIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKHPIDQEYGEKDLVKWVSSKLNEEGQDQVIDPNLDSKYKEEISKVLKVGILCTSSLPINRPSMRRVVNMLQEVTAVIKSRSGKFSPYYQEVVSNNDHLEA*