AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180000373.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000373.01.T01 MTR_1g017080 95.866 387 7 4 1 386 1 379 0.0 759
MsG0180000373.01.T01 MTR_2g024390 58.730 252 90 3 126 373 117 358 3.34e-89 274
MsG0180000373.01.T01 MTR_5g033720 56.250 240 100 2 126 363 72 308 7.80e-85 261
MsG0180000373.01.T01 MTR_5g085860 55.187 241 94 3 126 362 46 276 2.58e-71 225
MsG0180000373.01.T01 MTR_1g084060 48.413 252 117 4 126 369 19 265 1.10e-69 220
MsG0180000373.01.T01 MTR_1g084060 48.413 252 117 4 126 369 19 265 2.05e-69 221
MsG0180000373.01.T01 MTR_2g461240 33.463 257 149 5 115 349 83 339 1.99e-37 139
MsG0180000373.01.T01 MTR_1g012960 32.472 271 152 6 110 349 150 420 1.35e-35 135
MsG0180000373.01.T01 MTR_5g011070 31.418 261 139 5 122 349 23 276 1.05e-33 127
MsG0180000373.01.T01 MTR_3g106400 31.597 288 159 8 100 349 68 355 4.98e-33 127
MsG0180000373.01.T01 MTR_4g116545 32.800 250 146 5 122 349 66 315 5.23e-33 126
MsG0180000373.01.T01 MTR_3g106400 31.597 288 159 8 100 349 68 355 6.92e-33 127
MsG0180000373.01.T01 MTR_4g116545 32.800 250 146 5 122 349 66 315 1.10e-32 125
MsG0180000373.01.T01 MTR_3g106400 31.597 288 159 8 100 349 68 355 1.63e-32 127
MsG0180000373.01.T01 MTR_7g065050 39.726 73 42 1 279 351 296 366 1.33e-11 66.2
MsG0180000373.01.T01 MTR_4g019450 43.243 74 39 2 278 351 351 421 1.72e-11 66.2
MsG0180000373.01.T01 MTR_4g051532 50.909 55 27 0 297 351 409 463 4.12e-11 65.1
MsG0180000373.01.T01 MTR_3g112300 37.000 100 55 4 252 351 315 406 6.19e-11 64.3
MsG0180000373.01.T01 MTR_3g112300 37.000 100 55 4 252 351 315 406 8.42e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180000373.01.T01 AT4G08150 67.989 353 86 9 42 386 65 398 1.18e-153 439
MsG0180000373.01.T01 AT1G62360 57.736 265 103 2 105 365 100 359 1.80e-89 275
MsG0180000373.01.T01 AT1G23380 56.904 239 96 3 125 361 84 317 4.26e-85 262
MsG0180000373.01.T01 AT1G23380 56.432 241 96 4 125 361 84 319 5.01e-83 256
MsG0180000373.01.T01 AT1G70510 53.165 237 108 1 125 361 68 301 1.19e-78 244
MsG0180000373.01.T01 AT1G70510 52.282 241 108 2 125 361 68 305 2.00e-76 239
MsG0180000373.01.T01 AT5G25220 33.962 265 148 7 109 349 142 403 2.73e-36 137
MsG0180000373.01.T01 AT5G25220 33.962 265 148 7 109 349 142 403 3.09e-36 137
MsG0180000373.01.T01 AT1G62990 30.996 271 146 7 111 349 14 275 2.32e-35 131
MsG0180000373.01.T01 AT5G11060 33.603 247 137 7 127 349 124 367 6.92e-34 130
MsG0180000373.01.T01 AT4G32040 30.242 248 144 4 127 349 119 362 1.09e-32 126
MsG0180000373.01.T01 AT4G32040 30.242 248 144 4 127 349 119 362 1.26e-32 126
MsG0180000373.01.T01 AT1G19700 50.909 55 27 0 297 351 358 412 4.05e-11 65.1
MsG0180000373.01.T01 AT1G19700 50.909 55 27 0 297 351 358 412 4.05e-11 65.1
MsG0180000373.01.T01 AT1G19700 50.909 55 27 0 297 351 358 412 4.05e-11 65.1
MsG0180000373.01.T01 AT1G19700 50.909 55 27 0 297 351 358 412 4.05e-11 65.1
MsG0180000373.01.T01 AT1G19700 50.909 55 27 0 297 351 358 412 4.05e-11 65.1
MsG0180000373.01.T01 AT1G75430 49.091 55 28 0 297 351 209 263 5.18e-11 63.5
MsG0180000373.01.T01 AT2G27220 49.091 55 28 0 297 351 235 289 6.52e-11 63.9
MsG0180000373.01.T01 AT2G27220 49.091 55 28 0 297 351 235 289 6.52e-11 63.9
MsG0180000373.01.T01 AT2G27220 49.091 55 28 0 297 351 253 307 8.28e-11 63.9

Find 139 sgRNAs with CRISPR-Local

Find 557 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATATAATGAATGAAATTT+AGG 0.118791 1:+5083819 None:intergenic
TGATTGGAGCTTATAGATTT+TGG 0.131806 1:+5083932 None:intergenic
TTTCTTAAATTTGAGTTAAA+TGG 0.150949 1:-5083638 MsG0180000373.01.T01:exon
TAACTTTAGTTTGTGGTATT+TGG 0.156377 1:-5075070 MsG0180000373.01.T01:three_prime_UTR
CTCCACACACGACTCATTTA+AGG 0.162478 1:+5075093 None:intergenic
CTTGAACTTTGATTTGAATT+TGG 0.198147 1:+5083592 None:intergenic
ATCAGAAGACATGCAGTTTA+TGG 0.215872 1:-5075699 MsG0180000373.01.T01:CDS
AGTTAAACATATATGGTATT+TGG 0.219668 1:-5083665 MsG0180000373.01.T01:five_prime_UTR
CTCTCAACTTCTTAAACTTT+TGG 0.237850 1:-5083898 MsG0180000373.01.T01:five_prime_UTR
AACAATTAATATGGTCACTA+TGG 0.246085 1:+5075267 None:intergenic
TATATAAACAATCTCAAATA+TGG 0.248994 1:-5083803 MsG0180000373.01.T01:five_prime_UTR
CTTTGATTTGAATTTGGATT+TGG 0.263194 1:+5083598 None:intergenic
CATTATATGTTACTCTTTGT+TGG 0.270999 1:-5075174 MsG0180000373.01.T01:three_prime_UTR
GCTGATGGTCCCTACCGTTT+AGG 0.271349 1:-5075620 MsG0180000373.01.T01:CDS
ACCAGTTATTTATTTGCTTC+TGG 0.277102 1:+5075753 None:intergenic
TTGAGGATGAGCAATGATTT+TGG 0.278077 1:+5083237 None:intergenic
TCAACTCAATTCTCAAATAT+AGG 0.293135 1:+5083695 None:intergenic
GCAATGGAGTACAAGAAATT+TGG 0.293232 1:+5083568 None:intergenic
TATATAATGAATGAAATTTA+GGG 0.294647 1:+5083820 None:intergenic
ACAGAGTGCAGCTCTTTATA+TGG 0.322707 1:-5075657 MsG0180000373.01.T01:CDS
TCTCCAAGACATTGCTGGTT+TGG 0.331109 1:-5084060 MsG0180000373.01.T01:five_prime_UTR
CTGATGGTCCCTACCGTTTA+GGG 0.343258 1:-5075619 MsG0180000373.01.T01:CDS
CTAGACAAAAGCTACTTAAT+TGG 0.349186 1:-5076437 MsG0180000373.01.T01:CDS
ACCAAACGAGCCACCACTTC+CGG 0.349272 1:+5082895 None:intergenic
GTGGTTGACAAGACTTTGTT+TGG 0.352682 1:+5084088 None:intergenic
CAACTCAATTCTCAAATATA+GGG 0.354293 1:+5083696 None:intergenic
GATTGAAGAAAGTTGTTCAT+TGG 0.355678 1:+5083493 None:intergenic
ACCGGAAGTGGTGGCTCGTT+TGG 0.365361 1:-5082896 MsG0180000373.01.T01:CDS
TTAGTCCATTTCTCAAATTA+CGG 0.369191 1:+5075549 None:intergenic
GTGAGAGAGTTAAACATATA+TGG 0.375313 1:-5083672 MsG0180000373.01.T01:five_prime_UTR
ACCATGAATTGATCTAGTTC+TGG 0.383416 1:+5082805 None:intergenic
GATATATGAAGCGTTGATAC+TGG 0.384637 1:-5075586 MsG0180000373.01.T01:three_prime_UTR
GACAAAGAAAACAATTAATA+TGG 0.387956 1:+5075258 None:intergenic
CCCCATCTCCAAGACATTGC+TGG 0.392395 1:-5084065 MsG0180000373.01.T01:five_prime_UTR
GAGAGATGAGTGAAGATGAT+TGG 0.403579 1:+5083916 None:intergenic
TGGTATTTGGAGTGCTCATA+AGG 0.403622 1:-5075057 MsG0180000373.01.T01:three_prime_UTR
ACCAGAAGCAAATAAATAAC+TGG 0.406580 1:-5075754 MsG0180000373.01.T01:CDS
ACTCTATAAAACAACAAAGT+AGG 0.412939 1:-5083731 MsG0180000373.01.T01:five_prime_UTR
ATTATAATATATAGTTTAAG+TGG 0.417051 1:-5075426 MsG0180000373.01.T01:three_prime_UTR
TACATTTAAATAGAAGCAAC+AGG 0.425421 1:+5075230 None:intergenic
ACCAGCCGTAATTTGAGAAA+TGG 0.428135 1:-5075554 MsG0180000373.01.T01:three_prime_UTR
TGTTGCTGTTGTACTTGATC+AGG 0.432893 1:+5083445 None:intergenic
GAAAGGAAAATTACCTAAAG+AGG 0.441916 1:-5076460 MsG0180000373.01.T01:CDS
AAATCCATAGCCTCTTGTAT+AGG 0.443002 1:+5082538 None:intergenic
ATGATGATTATGCATAATAT+TGG 0.443654 1:+5083327 None:intergenic
GTAGCATTGGCTGAATCAAC+AGG 0.445109 1:-5075782 MsG0180000373.01.T01:CDS
TTACAAATGGCCTTATCCTT+CGG 0.445371 1:-5076403 MsG0180000373.01.T01:intron
ATATTTGTTCTCATTAAAGC+TGG 0.445786 1:+5083361 None:intergenic
GATTGTGTTGGTGTTGGTGT+TGG 0.454560 1:+5083533 None:intergenic
ATCATAATCATGGCCCTAAA+CGG 0.455352 1:+5075606 None:intergenic
AACAACTTTCTTCAATCAAG+TGG 0.459908 1:-5083487 MsG0180000373.01.T01:CDS
GTTGATGATTGTGTTGGTGT+TGG 0.460652 1:+5083527 None:intergenic
ACCAGCAATGTCTTGGAGAT+GGG 0.461175 1:+5084064 None:intergenic
ATTGGCTGAATCAACAGGTT+TGG 0.461797 1:-5075777 MsG0180000373.01.T01:CDS
TGAACATTATCACCAATGTC+GGG 0.462343 1:-5075525 MsG0180000373.01.T01:three_prime_UTR
TCCAGAACTAGATCAATTCA+TGG 0.462800 1:-5082806 MsG0180000373.01.T01:intron
CAAATTCAAATCAAAGTTCA+AGG 0.464843 1:-5083591 MsG0180000373.01.T01:CDS
TTGGTTGTTTCCACTAGCAA+TGG 0.467119 1:+5083552 None:intergenic
CTTAAATTTGAGTTAAATGG+AGG 0.479098 1:-5083635 MsG0180000373.01.T01:exon
AGTCCAAACCAGCAATGTCT+TGG 0.481339 1:+5084057 None:intergenic
CATCATCAAGGAGGAGGAGG+AGG 0.483870 1:-5083307 MsG0180000373.01.T01:CDS
CACTTTGCAATGGACCCCTT+CGG 0.484187 1:-5082486 MsG0180000373.01.T01:CDS
GGTGGGAATTGCATTACAAA+TGG 0.484691 1:-5076416 MsG0180000373.01.T01:CDS
ATTAGAGAGAGAAGAGAGAG+TGG 0.484964 1:+5084027 None:intergenic
CGCTTCATATATCATAATCA+TGG 0.486017 1:+5075596 None:intergenic
TCTGCTCGAGGATCAATCTC+TGG 0.491728 1:+5076567 None:intergenic
TAAATCAAAGGAAGAGGCAC+TGG 0.492159 1:-5075727 MsG0180000373.01.T01:CDS
ACCAATGTCGGGGTGGTGGT+TGG 0.501049 1:-5075514 MsG0180000373.01.T01:three_prime_UTR
GATTGGAGCTCCACCGGAAG+TGG 0.502488 1:-5082908 MsG0180000373.01.T01:CDS
CTCTATAAAACAACAAAGTA+GGG 0.503637 1:-5083730 MsG0180000373.01.T01:five_prime_UTR
GGACCCCTTCGGATCTTCCC+TGG 0.503797 1:-5082475 MsG0180000373.01.T01:intron
TTTGTGTGTGTTGGGTAAAG+GGG 0.505097 1:+5083859 None:intergenic
AACCAGCAATGTCTTGGAGA+TGG 0.505140 1:+5084063 None:intergenic
TCCATTTCTCAAATTACGGC+TGG 0.507610 1:+5075553 None:intergenic
GACAAGCATAACATGAAACT+TGG 0.508753 1:-5075324 MsG0180000373.01.T01:three_prime_UTR
TTATAACGTACCGAAGGATA+AGG 0.509147 1:+5076393 None:intergenic
CACTATATTTCTTCAGCAAG+TGG 0.509181 1:+5076526 None:intergenic
GATTATGTTGATGATTGTGT+TGG 0.509559 1:+5083521 None:intergenic
GACAAAAGCTACTTAATTGG+TGG 0.509834 1:-5076434 MsG0180000373.01.T01:CDS
TTATATGGATGGTCATTACA+TGG 0.510806 1:-5075642 MsG0180000373.01.T01:CDS
AAGGCCTATACAAGAGGCTA+TGG 0.514686 1:-5082542 MsG0180000373.01.T01:CDS
AGCTTACATGGATTGTCAAA+AGG 0.519024 1:-5083197 MsG0180000373.01.T01:intron
TTGAACATTATCACCAATGT+CGG 0.520681 1:-5075526 MsG0180000373.01.T01:three_prime_UTR
TTCTTGTACTCCATTGCTAG+TGG 0.520994 1:-5083562 MsG0180000373.01.T01:CDS
GAGGATCAAGAGAATAGTGG+TGG 0.527205 1:-5076606 MsG0180000373.01.T01:CDS
ACAATTAATATGGTCACTAT+GGG 0.527439 1:+5075268 None:intergenic
AATTCACGGTCTTCTGCTCG+AGG 0.528363 1:+5076555 None:intergenic
GGGCATTGACAGGGTGGAGA+AGG 0.530619 1:+5083953 None:intergenic
CACTTGCTGAAGAAATATAG+TGG 0.533238 1:-5076525 MsG0180000373.01.T01:CDS
TAATATATAGTTTAAGTGGA+AGG 0.538110 1:-5075422 MsG0180000373.01.T01:three_prime_UTR
GAAGAGGATCAAGAGAATAG+TGG 0.545053 1:-5076609 MsG0180000373.01.T01:CDS
GCTTCACCACTAGAACTGCT+TGG 0.545490 1:+5083274 None:intergenic
TCCAACCACCACCCCGACAT+TGG 0.547179 1:+5075513 None:intergenic
TATGTAGATTGGAGCTCCAC+CGG 0.547316 1:-5082914 MsG0180000373.01.T01:intron
GGAATCAGAGAAGGTAGCAT+TGG 0.547951 1:-5075795 MsG0180000373.01.T01:CDS
TATTTGTTCTCATTAAAGCT+GGG 0.551107 1:+5083362 None:intergenic
TATCACCAATGTCGGGGTGG+TGG 0.551798 1:-5075518 MsG0180000373.01.T01:three_prime_UTR
ATGCATAATCATCATCATCA+AGG 0.555030 1:-5083319 MsG0180000373.01.T01:CDS
ATAAACTGCATGTCTTCTGA+TGG 0.556878 1:+5075701 None:intergenic
AGACATGCAGTTTATGGTGA+TGG 0.558113 1:-5075693 MsG0180000373.01.T01:CDS
GGTTCATAAATCAAAGGAAG+AGG 0.559927 1:-5075733 MsG0180000373.01.T01:CDS
CATCATCATCAAGGAGGAGG+AGG 0.560744 1:-5083310 MsG0180000373.01.T01:CDS
CAGCTAAATACACTTTGCAA+TGG 0.562110 1:-5082496 MsG0180000373.01.T01:CDS
TAATCATGGCCCTAAACGGT+AGG 0.564867 1:+5075610 None:intergenic
TGTGGAGTAACTTTAGTTTG+TGG 0.569486 1:-5075077 MsG0180000373.01.T01:three_prime_UTR
TGGAGCTCCACCGGAAGTGG+TGG 0.570424 1:-5082905 MsG0180000373.01.T01:CDS
CCAGCAATGTCTTGGAGATG+GGG 0.572717 1:+5084065 None:intergenic
TGTAAAAGACTAGAGTATTG+AGG 0.573212 1:+5083220 None:intergenic
AGTGCAGCTCTTTATATGGA+TGG 0.581356 1:-5075653 MsG0180000373.01.T01:CDS
AGAGAGAGAAGAGAGAGTGG+TGG 0.585750 1:+5084030 None:intergenic
GGGAGTCCAAGCAGTTCTAG+TGG 0.587384 1:-5083280 MsG0180000373.01.T01:CDS
CACCTTAAATGAGTCGTGTG+TGG 0.591522 1:-5075095 MsG0180000373.01.T01:three_prime_UTR
ATAACTGGTTCATAAATCAA+AGG 0.592016 1:-5075739 MsG0180000373.01.T01:CDS
ACAAAAGCTACTTAATTGGT+GGG 0.596461 1:-5076433 MsG0180000373.01.T01:CDS
AATCATCATCATCAAGGAGG+AGG 0.600518 1:-5083313 MsG0180000373.01.T01:CDS
ACTCACCAGGGAAGATCCGA+AGG 0.608503 1:+5082470 None:intergenic
ATTAACAAGGCCTATACAAG+AGG 0.622954 1:-5082548 MsG0180000373.01.T01:CDS
AGGCGTTGGTTCATCAGAAG+AGG 0.623533 1:-5076625 MsG0180000373.01.T01:CDS
AATCATGGCCCTAAACGGTA+GGG 0.623950 1:+5075611 None:intergenic
ATGCAGTTTATGGTGATGGA+TGG 0.624056 1:-5075689 MsG0180000373.01.T01:CDS
CACACACGACTCATTTAAGG+TGG 0.624330 1:+5075096 None:intergenic
ATATAAAGAGCTGCACTCTG+TGG 0.627158 1:+5075659 None:intergenic
AAACGAGCCACCACTTCCGG+TGG 0.627824 1:+5082898 None:intergenic
AGTTGTCACCACCAGAGTGT+AGG 0.630793 1:+5075197 None:intergenic
CAGCAATGTCTTGGAGATGG+GGG 0.638446 1:+5084066 None:intergenic
GATGGTCATTACATGGCTGA+TGG 0.643940 1:-5075635 MsG0180000373.01.T01:CDS
CACTATATAGGAATCAGAGA+AGG 0.647456 1:-5075804 MsG0180000373.01.T01:intron
CATGCTTGTGAAGTATAGAG+AGG 0.648293 1:-5082572 MsG0180000373.01.T01:CDS
TACGCACTCCTACACTCTGG+TGG 0.666943 1:-5075205 MsG0180000373.01.T01:three_prime_UTR
CATTATCACCAATGTCGGGG+TGG 0.670905 1:-5075521 MsG0180000373.01.T01:three_prime_UTR
TTATCTTCAATATGAAACGT+CGG 0.671203 1:-5075489 MsG0180000373.01.T01:three_prime_UTR
GAACATTATCACCAATGTCG+GGG 0.675009 1:-5075524 MsG0180000373.01.T01:three_prime_UTR
CTAAGCAAGAGTTTGAAGCA+AGG 0.676115 1:-5082867 MsG0180000373.01.T01:CDS
CTCACCAGGGAAGATCCGAA+GGG 0.678902 1:+5082471 None:intergenic
CATAATCATCATCATCAAGG+AGG 0.690149 1:-5083316 MsG0180000373.01.T01:CDS
AATTACGCACTCCTACACTC+TGG 0.698051 1:-5075208 MsG0180000373.01.T01:three_prime_UTR
TTATGCATAATATTGGTGTG+TGG 0.710252 1:+5083334 None:intergenic
AGTATAGAGAGGAATTAACA+AGG 0.714149 1:-5082561 MsG0180000373.01.T01:CDS
TCACCAGGGAAGATCCGAAG+GGG 0.724320 1:+5082472 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTTAAAAATATATTATAA+AGG + Chr1:5080781-5080800 None:intergenic 0.0%
!! ATAATAAAAAATATAAAAAA+AGG + Chr1:5081298-5081317 None:intergenic 0.0%
!! ATTAAAATATATATAAAAAA+TGG + Chr1:5076113-5076132 None:intergenic 0.0%
!! TTAAAATATATATAAAAAAT+GGG + Chr1:5076112-5076131 None:intergenic 0.0%
!! AAATAATATAGATAGTAATA+GGG + Chr1:5079693-5079712 None:intergenic 10.0%
!! AAGTTATTTATACTTAAAAA+TGG - Chr1:5081031-5081050 MsG0180000373.01.T01:intron 10.0%
!! AATCTATAAAAAAAATACTT+TGG - Chr1:5082147-5082166 MsG0180000373.01.T01:intron 10.0%
!! ATAGAGTATAAATAATTATA+CGG - Chr1:5081915-5081934 MsG0180000373.01.T01:intron 10.0%
!! ATTATAATATATAGTTTAAG+TGG - Chr1:5083653-5083672 MsG0180000373.01.T01:five_prime_UTR 10.0%
!! TAAGTTAAAAAAAATGATTA+AGG + Chr1:5080020-5080039 None:intergenic 10.0%
!! TAAGTTAAAAAATATGATTA+AGG + Chr1:5080358-5080377 None:intergenic 10.0%
!! TATATAATGAATGAAATTTA+GGG + Chr1:5075262-5075281 None:intergenic 10.0%
!! TTATAGAGTAATAAAAATTA+TGG + Chr1:5075337-5075356 None:intergenic 10.0%
!! TTATATAATGAATGAAATTT+AGG + Chr1:5075263-5075282 None:intergenic 10.0%
!! TTCATTTATAAATAATTAGA+TGG + Chr1:5079265-5079284 None:intergenic 10.0%
!! TTTAAACTTAATATTTATCA+TGG + Chr1:5076372-5076391 None:intergenic 10.0%
!!! AAAAAAAAAAAAAAGTATGT+TGG + Chr1:5077670-5077689 None:intergenic 10.0%
!!! AAAAAAAAAAAAAGTATGTT+GGG + Chr1:5077669-5077688 None:intergenic 10.0%
!!! CATGTAATTTTTTTATTAAT+AGG + Chr1:5083147-5083166 None:intergenic 10.0%
!!! TAATTACATGATATTTTTTA+GGG - Chr1:5081525-5081544 MsG0180000373.01.T01:intron 10.0%
!!! TTAATCTTTTAACTTAATTT+TGG - Chr1:5079178-5079197 MsG0180000373.01.T01:intron 10.0%
!!! TTAATTACATGATATTTTTT+AGG - Chr1:5081524-5081543 MsG0180000373.01.T01:intron 10.0%
!! AAATATCAGGATAATAAATA+AGG - Chr1:5081056-5081075 MsG0180000373.01.T01:intron 15.0%
!! AAGGAGTAATAAAAAAAATA+AGG - Chr1:5078150-5078169 MsG0180000373.01.T01:intron 15.0%
!! AATATATATGTAAAATGAGA+AGG + Chr1:5082787-5082806 None:intergenic 15.0%
!! AATTAATCTAAGGATAATTA+TGG + Chr1:5079492-5079511 None:intergenic 15.0%
!! AATTTAAATGTCTCTTATAT+AGG - Chr1:5079977-5079996 MsG0180000373.01.T01:intron 15.0%
!! AGATAATTAAAGATATCTAA+AGG + Chr1:5080544-5080563 None:intergenic 15.0%
!! ATAAGTCATAAATTAACAAT+TGG - Chr1:5081575-5081594 MsG0180000373.01.T01:intron 15.0%
!! ATTAATACATATACAAACAA+AGG + Chr1:5078928-5078947 None:intergenic 15.0%
!! ATTTAAATGTCTCTTATATA+GGG - Chr1:5079978-5079997 MsG0180000373.01.T01:intron 15.0%
!! CTAATTATTTATAAATGAAG+AGG - Chr1:5079266-5079285 MsG0180000373.01.T01:intron 15.0%
!! CTCTAATAAATAAGATTAAA+AGG + Chr1:5079346-5079365 None:intergenic 15.0%
!! CTTAAAAAAATATATAAAGG+TGG + Chr1:5081768-5081787 None:intergenic 15.0%
!! GAAATAATATAGATAGTAAT+AGG + Chr1:5079694-5079713 None:intergenic 15.0%
!! GAACAACTATTATTATTATT+AGG - Chr1:5079586-5079605 MsG0180000373.01.T01:intron 15.0%
!! GCACTTAAAAAAATATATAA+AGG + Chr1:5081771-5081790 None:intergenic 15.0%
!! TAAGTCATAAATTAACAATT+GGG - Chr1:5081576-5081595 MsG0180000373.01.T01:intron 15.0%
!! TATATAAACAATCTCAAATA+TGG - Chr1:5075276-5075295 MsG0180000373.01.T01:three_prime_UTR 15.0%
!! TATCCTTATAATTAAGTTTA+AGG - Chr1:5079766-5079785 MsG0180000373.01.T01:intron 15.0%
!! TTATTTATTAGAGACATTTA+GGG - Chr1:5079353-5079372 MsG0180000373.01.T01:intron 15.0%
!!! AAAAAAAAAAAAGTATGTTG+GGG + Chr1:5077668-5077687 None:intergenic 15.0%
!!! AGTAATAAAATTTACTTTTG+TGG + Chr1:5082946-5082965 None:intergenic 15.0%
!!! ATTTCGCTTTTAATAATTTT+TGG - Chr1:5080798-5080817 MsG0180000373.01.T01:intron 15.0%
!!! ATTTTAATTAAAAACGTGTT+TGG + Chr1:5079836-5079855 None:intergenic 15.0%
!!! ATTTTTTATTGTTGCTAAAA+CGG - Chr1:5077163-5077182 MsG0180000373.01.T01:intron 15.0%
!!! CTATGAAAAATTTATAGTTT+TGG - Chr1:5077549-5077568 MsG0180000373.01.T01:intron 15.0%
!!! TTTCTTAAATTTGAGTTAAA+TGG - Chr1:5075441-5075460 MsG0180000373.01.T01:three_prime_UTR 15.0%
!!! TTTTTAAATTGTTATCATGA+TGG + Chr1:5076083-5076102 None:intergenic 15.0%
!! AAAAAATGATTAAGGACTAA+AGG + Chr1:5080012-5080031 None:intergenic 20.0%
!! AAAATATGATTAAGGACTAA+AGG + Chr1:5080350-5080369 None:intergenic 20.0%
!! AAAGTTAATTAGCAACTTTA+AGG - Chr1:5081472-5081491 MsG0180000373.01.T01:intron 20.0%
!! AAATATCATCTTCACTTATA+TGG + Chr1:5076914-5076933 None:intergenic 20.0%
!! AAGATCCTTAAAAAAAAAAG+AGG - Chr1:5078666-5078685 MsG0180000373.01.T01:intron 20.0%
!! AAGTCATAAATTAACAATTG+GGG - Chr1:5081577-5081596 MsG0180000373.01.T01:intron 20.0%
!! AAGTTAGTAGTATTAATTAG+GGG - Chr1:5078970-5078989 MsG0180000373.01.T01:intron 20.0%
!! AATATCATATAAGAAGTTGT+TGG + Chr1:5077861-5077880 None:intergenic 20.0%
!! AATATCATCTTCACTTATAT+GGG + Chr1:5076913-5076932 None:intergenic 20.0%
!! AATTACTTAGACATTAATGT+TGG - Chr1:5082390-5082409 MsG0180000373.01.T01:intron 20.0%
!! ACAAGTTAGTAGTATTAATT+AGG - Chr1:5078968-5078987 MsG0180000373.01.T01:intron 20.0%
!! ACATTCATTTACAACTATTA+CGG - Chr1:5081444-5081463 MsG0180000373.01.T01:intron 20.0%
!! AGAAAGGAAAAAAAAAACTA+TGG + Chr1:5083226-5083245 None:intergenic 20.0%
!! AGGAAAAGTTGTTAATAATA+TGG + Chr1:5079640-5079659 None:intergenic 20.0%
!! AGTATAAATAATTATACGGA+AGG - Chr1:5081919-5081938 MsG0180000373.01.T01:intron 20.0%
!! AGTTAAACATATATGGTATT+TGG - Chr1:5075414-5075433 MsG0180000373.01.T01:three_prime_UTR 20.0%
!! ATGATGATTATGCATAATAT+TGG + Chr1:5075755-5075774 None:intergenic 20.0%
!! ATTCTAATATCATCTTAGAA+CGG + Chr1:5082130-5082149 None:intergenic 20.0%
!! CAAGTTAGTAGTATTAATTA+GGG - Chr1:5078969-5078988 MsG0180000373.01.T01:intron 20.0%
!! CTTATTTATTAGAGACATTT+AGG - Chr1:5079352-5079371 MsG0180000373.01.T01:intron 20.0%
!! GACAAAGAAAACAATTAATA+TGG + Chr1:5083824-5083843 None:intergenic 20.0%
!! GAGATGAAAATACTTATAAA+TGG + Chr1:5078417-5078436 None:intergenic 20.0%
!! GAGTAATAAAAATTATGGAA+AGG + Chr1:5075332-5075351 None:intergenic 20.0%
!! TAAACAAACTATATGTAGAT+TGG - Chr1:5076154-5076173 MsG0180000373.01.T01:intron 20.0%
!! TAAAGTTGCTAATTAACTTT+AGG + Chr1:5081472-5081491 None:intergenic 20.0%
!! TAATATATAGTTTAAGTGGA+AGG - Chr1:5083657-5083676 MsG0180000373.01.T01:five_prime_UTR 20.0%
!! TAGTAATAAAAGTTGTTACA+AGG + Chr1:5079660-5079679 None:intergenic 20.0%
!! TATACTTATGACATTATAGT+TGG + Chr1:5078283-5078302 None:intergenic 20.0%
!! TATATTCGAAACAAATGAAT+TGG + Chr1:5083061-5083080 None:intergenic 20.0%
!! TATCTAAATCCTTTATCATT+TGG - Chr1:5080979-5080998 MsG0180000373.01.T01:intron 20.0%
!! TCACCTTAAACTTAATTATA+AGG + Chr1:5079772-5079791 None:intergenic 20.0%
!! TGAGAGTTTAAATTAATCTA+AGG + Chr1:5079502-5079521 None:intergenic 20.0%
!! TTATTAGAACTTATAGATTG+TGG - Chr1:5076436-5076455 MsG0180000373.01.T01:CDS 20.0%
!! TTTCAGTCAGAAATTAAATT+CGG - Chr1:5076050-5076069 MsG0180000373.01.T01:intron 20.0%
!!! AAAAATTACATGTTGCATTT+TGG - Chr1:5083155-5083174 MsG0180000373.01.T01:intron 20.0%
!!! AAAATTTTGTAAAAAAGTGG+TGG - Chr1:5081738-5081757 MsG0180000373.01.T01:intron 20.0%
!!! AAATTTTGTAAAAAAGTGGT+GGG - Chr1:5081739-5081758 MsG0180000373.01.T01:intron 20.0%
!!! CTAGCAATAAAGTTTTAAAA+AGG - Chr1:5078513-5078532 MsG0180000373.01.T01:intron 20.0%
!!! CTTTTTGAGTCAAAAAAAAT+AGG + Chr1:5082333-5082352 None:intergenic 20.0%
!!! GTCAAAATTTTGTAAAAAAG+TGG - Chr1:5081735-5081754 MsG0180000373.01.T01:intron 20.0%
!!! TAAAATTTACTTTTGTGGTT+CGG + Chr1:5082941-5082960 None:intergenic 20.0%
!!! TATATCTGGTTTAATATAGA+CGG - Chr1:5079937-5079956 MsG0180000373.01.T01:intron 20.0%
!!! TATCTGGTTTAAAATATAGA+AGG - Chr1:5080274-5080293 MsG0180000373.01.T01:intron 20.0%
!!! TATTTTTAATTTGACGTGTT+TGG - Chr1:5079413-5079432 MsG0180000373.01.T01:intron 20.0%
!!! TCAATTCTCTATTTTCTTTT+GGG - Chr1:5077416-5077435 MsG0180000373.01.T01:intron 20.0%
!!! TGTGAAATAATGTTTTCATT+CGG - Chr1:5081987-5082006 MsG0180000373.01.T01:intron 20.0%
!!! TGTTATTATTATTAGGTTGT+AGG - Chr1:5079550-5079569 MsG0180000373.01.T01:intron 20.0%
!!! TTCAATTCTCTATTTTCTTT+TGG - Chr1:5077415-5077434 MsG0180000373.01.T01:intron 20.0%
!!! TTTATGATTTTGACGTTTAT+GGG - Chr1:5080953-5080972 MsG0180000373.01.T01:intron 20.0%
!!! TTTGGTTCAATTTTTAAGAA+GGG - Chr1:5079431-5079450 MsG0180000373.01.T01:intron 20.0%
!!! TTTTATGATTTTGACGTTTA+TGG - Chr1:5080952-5080971 MsG0180000373.01.T01:intron 20.0%
! AAACTTTATTGCTAGTTGTT+CGG + Chr1:5078508-5078527 None:intergenic 25.0%
! AAATATGATCAAAGTATGTC+AGG + Chr1:5077951-5077970 None:intergenic 25.0%
! AAATGAAATCAAATGTCCAA+AGG + Chr1:5077066-5077085 None:intergenic 25.0%
! AAATGGTGTTTATGTTTAAC+AGG - Chr1:5076471-5076490 MsG0180000373.01.T01:CDS 25.0%
! AACAATTAATATGGTCACTA+TGG + Chr1:5083815-5083834 None:intergenic 25.0%
! AATGAAATCAAATGTCCAAA+GGG + Chr1:5077065-5077084 None:intergenic 25.0%
! AATGAATGTAGAAGTGATAT+CGG + Chr1:5081433-5081452 None:intergenic 25.0%
! ACAATTAATATGGTCACTAT+GGG + Chr1:5083814-5083833 None:intergenic 25.0%
! ACATCTATCTATCTATAAGT+GGG - Chr1:5082055-5082074 MsG0180000373.01.T01:intron 25.0%
! ACGAACTCATAAATTAATTC+TGG - Chr1:5076740-5076759 MsG0180000373.01.T01:intron 25.0%
! ACTCATAAGCATGTATTTAT+CGG + Chr1:5080619-5080638 None:intergenic 25.0%
! ACTCTATAAAACAACAAAGT+AGG - Chr1:5075348-5075367 MsG0180000373.01.T01:three_prime_UTR 25.0%
! ATAATGCATATAGTCAAACA+AGG - Chr1:5080669-5080688 MsG0180000373.01.T01:intron 25.0%
! ATATTTGTTCTCATTAAAGC+TGG + Chr1:5075721-5075740 None:intergenic 25.0%
! ATGCATCTAGTAATTTGAAA+AGG - Chr1:5079016-5079035 MsG0180000373.01.T01:intron 25.0%
! ATTATCATATAAGCTGTTGT+TGG - Chr1:5077995-5078014 MsG0180000373.01.T01:intron 25.0%
! CAAAAATAAAGTCAAATGGA+TGG - Chr1:5079055-5079074 MsG0180000373.01.T01:intron 25.0%
! CAAATTCAAATCAAAGTTCA+AGG - Chr1:5075488-5075507 MsG0180000373.01.T01:three_prime_UTR 25.0%
! CAACTCAATTCTCAAATATA+GGG + Chr1:5075386-5075405 None:intergenic 25.0%
! CATTATATGTTACTCTTTGT+TGG - Chr1:5083905-5083924 MsG0180000373.01.T01:five_prime_UTR 25.0%
! CTCTATAAAACAACAAAGTA+GGG - Chr1:5075349-5075368 MsG0180000373.01.T01:three_prime_UTR 25.0%
! CTGACAAAATTATTCTTCTA+GGG - Chr1:5077245-5077264 MsG0180000373.01.T01:intron 25.0%
! CTTAAAAATGGCAAAATATC+AGG - Chr1:5081043-5081062 MsG0180000373.01.T01:intron 25.0%
! GAAACAGAAAAAAATTCATC+TGG + Chr1:5077143-5077162 None:intergenic 25.0%
! GAATTGAAAAGTGATTAAGA+CGG + Chr1:5077403-5077422 None:intergenic 25.0%
! GATAAAAAATGTAGCGATTA+GGG + Chr1:5076954-5076973 None:intergenic 25.0%
! TAAAAACATCAAAGACATCA+AGG + Chr1:5080410-5080429 None:intergenic 25.0%
! TAAAAGGAGTAATTATCAAG+TGG + Chr1:5079330-5079349 None:intergenic 25.0%
! TAAATTGTTATCATGATGGT+GGG + Chr1:5076079-5076098 None:intergenic 25.0%
! TAATCTAAGGATAATTATGG+CGG + Chr1:5079489-5079508 None:intergenic 25.0%
! TAATTAATCAACCAACTCTA+AGG + Chr1:5081675-5081694 None:intergenic 25.0%
! TACATCTATCTATCTATAAG+TGG - Chr1:5082054-5082073 MsG0180000373.01.T01:intron 25.0%
! TACATTTAAATAGAAGCAAC+AGG + Chr1:5083852-5083871 None:intergenic 25.0%
! TATACAAACAAAGGACAATA+TGG + Chr1:5078919-5078938 None:intergenic 25.0%
! TATTTGTTCTCATTAAAGCT+GGG + Chr1:5075720-5075739 None:intergenic 25.0%
! TCAACTAGGTCATATAATAA+TGG - Chr1:5078123-5078142 MsG0180000373.01.T01:intron 25.0%
! TCAACTCAATTCTCAAATAT+AGG + Chr1:5075387-5075406 None:intergenic 25.0%
! TCTCAAAGTTATATTCTTCT+TGG - Chr1:5083243-5083262 MsG0180000373.01.T01:CDS 25.0%
! TCTGACAAAATTATTCTTCT+AGG - Chr1:5077244-5077263 MsG0180000373.01.T01:intron 25.0%
! TGAGTAGATGATAAAAATGA+AGG - Chr1:5082434-5082453 MsG0180000373.01.T01:intron 25.0%
! TGATAAAAAATGTAGCGATT+AGG + Chr1:5076955-5076974 None:intergenic 25.0%
! TGCATCTAGTAATTTGAAAA+GGG - Chr1:5079017-5079036 MsG0180000373.01.T01:intron 25.0%
! TTAAATTGTTATCATGATGG+TGG + Chr1:5076080-5076099 None:intergenic 25.0%
! TTAATCTCAAATTTAGTGGA+AGG - Chr1:5075994-5076013 MsG0180000373.01.T01:intron 25.0%
! TTACAAAGGAAAGTCAAAAT+AGG - Chr1:5081137-5081156 MsG0180000373.01.T01:intron 25.0%
! TTAGTCCATTTCTCAAATTA+CGG + Chr1:5083533-5083552 None:intergenic 25.0%
! TTATCTTCAATATGAAACGT+CGG - Chr1:5083590-5083609 MsG0180000373.01.T01:CDS 25.0%
! TTGGTTAATCTCAAATTTAG+TGG - Chr1:5075990-5076009 MsG0180000373.01.T01:intron 25.0%
!! AAGTCTTATATGATCCTATA+TGG + Chr1:5082033-5082052 None:intergenic 25.0%
!! AATGATTTTCTAATCCAATC+AGG - Chr1:5081079-5081098 MsG0180000373.01.T01:intron 25.0%
!! ACATAAGTTGACTTAAAGTA+TGG + Chr1:5080856-5080875 None:intergenic 25.0%
!! AGTCTTATATGATCCTATAT+GGG + Chr1:5082032-5082051 None:intergenic 25.0%
!! ATAACTGGTTCATAAATCAA+AGG - Chr1:5083340-5083359 MsG0180000373.01.T01:CDS 25.0%
!! ATTATTTTCATGCCAACTTT+TGG - Chr1:5078704-5078723 MsG0180000373.01.T01:intron 25.0%
!! CATCTAAGGTACAAATTTAA+GGG + Chr1:5081808-5081827 None:intergenic 25.0%
!! CTCAAATATGGTTTTCATTA+GGG - Chr1:5075288-5075307 MsG0180000373.01.T01:three_prime_UTR 25.0%
!! CTTAAATTTGAGTTAAATGG+AGG - Chr1:5075444-5075463 MsG0180000373.01.T01:three_prime_UTR 25.0%
!! GAAGAATATAACTTTGAGAA+AGG + Chr1:5083242-5083261 None:intergenic 25.0%
!! TCTCAAATATGGTTTTCATT+AGG - Chr1:5075287-5075306 MsG0180000373.01.T01:three_prime_UTR 25.0%
!! TTATTTTCATGCCAACTTTT+GGG - Chr1:5078705-5078724 MsG0180000373.01.T01:intron 25.0%
!! TTTATACCTATCCTTTTAGA+GGG - Chr1:5077091-5077110 MsG0180000373.01.T01:intron 25.0%
!! TTTTATACCTATCCTTTTAG+AGG - Chr1:5077090-5077109 MsG0180000373.01.T01:intron 25.0%
!! TTTTCCTTTCTTTTTCTTCT+TGG + Chr1:5082609-5082628 None:intergenic 25.0%
!!! AAGCAATCACAAGTTATTTT+TGG + Chr1:5084088-5084107 None:intergenic 25.0%
!!! ACACACCTCTTTTTTTTTTA+AGG + Chr1:5078674-5078693 None:intergenic 25.0%
!!! ACTTAATTTTGGTTGAAACT+TGG - Chr1:5079189-5079208 MsG0180000373.01.T01:intron 25.0%
!!! CGATATTCGCTTTTTTTTAT+CGG + Chr1:5082815-5082834 None:intergenic 25.0%
!!! CTTGAACTTTGATTTGAATT+TGG + Chr1:5075490-5075509 None:intergenic 25.0%
!!! CTTTGATTTGAATTTGGATT+TGG + Chr1:5075484-5075503 None:intergenic 25.0%
!!! GTTTGGTTCAATTTTTAAGA+AGG - Chr1:5079430-5079449 MsG0180000373.01.T01:intron 25.0%
!!! TAACTTTAGTTTGTGGTATT+TGG - Chr1:5084009-5084028 MsG0180000373.01.T01:five_prime_UTR 25.0%
!!! TATTAATTAGGGGTATGTTT+TGG - Chr1:5078980-5078999 MsG0180000373.01.T01:intron 25.0%
!!! TTATGATTTTGACGTTTATG+GGG - Chr1:5080954-5080973 MsG0180000373.01.T01:intron 25.0%
!!! TTGGTTCAATTTTTAAGAAG+GGG - Chr1:5079432-5079451 MsG0180000373.01.T01:intron 25.0%
!!! TTTATTTTATCCTATCTCGT+TGG - Chr1:5081172-5081191 MsG0180000373.01.T01:intron 25.0%
AAAAACAATGTTTGTGTGTG+TGG - Chr1:5081834-5081853 MsG0180000373.01.T01:intron 30.0%
AAAGCTGGGTAATGAAAAAT+CGG + Chr1:5075706-5075725 None:intergenic 30.0%
AACAACTTTCTTCAATCAAG+TGG - Chr1:5075592-5075611 MsG0180000373.01.T01:three_prime_UTR 30.0%
AACTTTATTGCTAGTTGTTC+GGG + Chr1:5078507-5078526 None:intergenic 30.0%
AAGAAAGGATGCAAAACAAA+GGG + Chr1:5077614-5077633 None:intergenic 30.0%
AAGGAAAGTCAAAATAGGAT+AGG - Chr1:5081142-5081161 MsG0180000373.01.T01:intron 30.0%
AAGTCAAAAGTCATGTTAAC+AGG - Chr1:5078449-5078468 MsG0180000373.01.T01:intron 30.0%
AATATCATCTTAGAACGGTT+GGG + Chr1:5082125-5082144 None:intergenic 30.0%
ACAAAAGCTACTTAATTGGT+GGG - Chr1:5082646-5082665 MsG0180000373.01.T01:intron 30.0%
ACCAGAAGCAAATAAATAAC+TGG - Chr1:5083325-5083344 MsG0180000373.01.T01:CDS 30.0%
ACCAGATATATCAATCTTTG+TGG + Chr1:5079927-5079946 None:intergenic 30.0%
ACCAGTTATTTATTTGCTTC+TGG + Chr1:5083329-5083348 None:intergenic 30.0%
ACTCAGGATAGAAATTACAA+AGG - Chr1:5081123-5081142 MsG0180000373.01.T01:intron 30.0%
ACTCTTTCTCATCATTACAT+TGG - Chr1:5077365-5077384 MsG0180000373.01.T01:intron 30.0%
AGAACTAACTCATGTATGTT+GGG + Chr1:5078392-5078411 None:intergenic 30.0%
AGTATAGAGAGGAATTAACA+AGG - Chr1:5076518-5076537 MsG0180000373.01.T01:CDS 30.0%
ATCAAACATGAGATTTAAGC+AGG - Chr1:5081198-5081217 MsG0180000373.01.T01:intron 30.0%
ATGAAATCAAATGTCCAAAG+GGG + Chr1:5077064-5077083 None:intergenic 30.0%
ATGCATAATCATCATCATCA+AGG - Chr1:5075760-5075779 MsG0180000373.01.T01:CDS 30.0%
ATGGAACATATATCACATTG+TGG + Chr1:5083207-5083226 None:intergenic 30.0%
CAAATGGATGGTTAGAAATA+GGG - Chr1:5079067-5079086 MsG0180000373.01.T01:intron 30.0%
CCAGATATATCAATCTTTGT+GGG + Chr1:5079926-5079945 None:intergenic 30.0%
CCTTAAATTTGTACCTTAGA+TGG - Chr1:5081806-5081825 MsG0180000373.01.T01:intron 30.0%
CGCAAAAAATCGAATATTCT+TGG - Chr1:5082833-5082852 MsG0180000373.01.T01:CDS 30.0%
CGCTTCATATATCATAATCA+TGG + Chr1:5083486-5083505 None:intergenic 30.0%
CTAGACAAAAGCTACTTAAT+TGG - Chr1:5082642-5082661 MsG0180000373.01.T01:intron 30.0%
CTATAGATATACGCGAATTT+GGG + Chr1:5082292-5082311 None:intergenic 30.0%
CTGTTTGATCCAAATGATAA+AGG + Chr1:5080991-5081010 None:intergenic 30.0%
CTTCTTAACAAGTGTCATAA+CGG + Chr1:5078559-5078578 None:intergenic 30.0%
CTTTCCAAGAAGAAAAAGAA+AGG - Chr1:5082602-5082621 MsG0180000373.01.T01:intron 30.0%
GAAAGGAAAATTACCTAAAG+AGG - Chr1:5082619-5082638 MsG0180000373.01.T01:intron 30.0%
GACTATATGCATTATTCACA+TGG + Chr1:5080664-5080683 None:intergenic 30.0%
GATTGAAGAAAGTTGTTCAT+TGG + Chr1:5075589-5075608 None:intergenic 30.0%
GCATCTAGTAATTTGAAAAG+GGG - Chr1:5079018-5079037 MsG0180000373.01.T01:intron 30.0%
GCTTTATAAATCAACTTGCA+AGG + Chr1:5082251-5082270 None:intergenic 30.0%
GGGACAAAAATAAAGTCAAA+TGG - Chr1:5079051-5079070 MsG0180000373.01.T01:intron 30.0%
GTAAAACATCAAAGACATCA+AGG + Chr1:5080072-5080091 None:intergenic 30.0%
GTAATTTCTATCCTGAGTAT+AGG + Chr1:5081121-5081140 None:intergenic 30.0%
GTCATTTATTGTAGAACAGA+GGG - Chr1:5078211-5078230 MsG0180000373.01.T01:intron 30.0%
GTGAGAGAGTTAAACATATA+TGG - Chr1:5075407-5075426 MsG0180000373.01.T01:three_prime_UTR 30.0%
TAAGAAAGGATGCAAAACAA+AGG + Chr1:5077615-5077634 None:intergenic 30.0%
TAATATCATCTTAGAACGGT+TGG + Chr1:5082126-5082145 None:intergenic 30.0%
TAGATCAATTCATGGTACAA+GGG - Chr1:5076281-5076300 MsG0180000373.01.T01:intron 30.0%
TATCACATTGTGGTTTAGTT+TGG + Chr1:5083197-5083216 None:intergenic 30.0%
TCAAACAGGTCATCTAATAA+GGG + Chr1:5077912-5077931 None:intergenic 30.0%
TCAAATGGATGGTTAGAAAT+AGG - Chr1:5079066-5079085 MsG0180000373.01.T01:intron 30.0%
TCCTTTCTTACAAAACACAT+TGG - Chr1:5077625-5077644 MsG0180000373.01.T01:intron 30.0%
TGAAAAGGGGTTTAGATTTA+GGG - Chr1:5079031-5079050 MsG0180000373.01.T01:intron 30.0%
TGAGATATGGACACAAAAAA+TGG + Chr1:5079232-5079251 None:intergenic 30.0%
TGGACATATGATCACTATAT+AGG - Chr1:5083263-5083282 MsG0180000373.01.T01:CDS 30.0%
TGTTATTGAAAGTCCCATAT+AGG - Chr1:5082016-5082035 MsG0180000373.01.T01:intron 30.0%
TTATATGGATGGTCATTACA+TGG - Chr1:5083437-5083456 MsG0180000373.01.T01:CDS 30.0%
TTATGCATAATATTGGTGTG+TGG + Chr1:5075748-5075767 None:intergenic 30.0%
TTGAAAAGGGGTTTAGATTT+AGG - Chr1:5079030-5079049 MsG0180000373.01.T01:intron 30.0%
TTGAACATTATCACCAATGT+CGG - Chr1:5083553-5083572 MsG0180000373.01.T01:CDS 30.0%
TTTATAAAGCCGAAGTTAGT+AGG - Chr1:5082261-5082280 MsG0180000373.01.T01:intron 30.0%
! AAAAAAAAGTATGTTGGGGT+TGG + Chr1:5077664-5077683 None:intergenic 30.0%
! AAAAGTGCAAATTGTCAAAC+AGG + Chr1:5077926-5077945 None:intergenic 30.0%
! AAGAAGTGTGAAAAAAGCAA+AGG + Chr1:5078846-5078865 None:intergenic 30.0%
! AGAAGTGTGAAAAAAGCAAA+GGG + Chr1:5078845-5078864 None:intergenic 30.0%
! ATAAAGTATTACTACTCACC+AGG + Chr1:5076625-5076644 None:intergenic 30.0%
! CAAACAAGGTCTATCATTTT+GGG - Chr1:5080683-5080702 MsG0180000373.01.T01:intron 30.0%
! CAGCAAAACATTGATTAACA+AGG + Chr1:5077274-5077293 None:intergenic 30.0%
! CCATACAAAATTGAGTTGTA+AGG + Chr1:5082091-5082110 None:intergenic 30.0%
! CCATCTAAGGTACAAATTTA+AGG + Chr1:5081809-5081828 None:intergenic 30.0%
! CCTTACAACTCAATTTTGTA+TGG - Chr1:5082088-5082107 MsG0180000373.01.T01:intron 30.0%
! CTAGGTCATATAATAATGGA+CGG - Chr1:5078127-5078146 MsG0180000373.01.T01:intron 30.0%
! CTCTCAACTTCTTAAACTTT+TGG - Chr1:5075181-5075200 MsG0180000373.01.T01:three_prime_UTR 30.0%
! GAATAATTTTGTCAGAACTC+AGG + Chr1:5077240-5077259 None:intergenic 30.0%
! GACACTTGTTAAGAAGTTTA+AGG - Chr1:5078563-5078582 MsG0180000373.01.T01:intron 30.0%
! GATTGGAGCTTATAGATTTT+GGG + Chr1:5075149-5075168 None:intergenic 30.0%
! TAAAGTATTACTACTCACCA+GGG + Chr1:5076624-5076643 None:intergenic 30.0%
! TAGTCTTTTACAAGCTTACA+TGG - Chr1:5075870-5075889 MsG0180000373.01.T01:intron 30.0%
! TCAAACAAGGTCTATCATTT+TGG - Chr1:5080682-5080701 MsG0180000373.01.T01:intron 30.0%
! TCCAATGTGTTTTGTAAGAA+AGG + Chr1:5077629-5077648 None:intergenic 30.0%
! TGATTGGAGCTTATAGATTT+TGG + Chr1:5075150-5075169 None:intergenic 30.0%
! TGGTGATGTAAAATACTTAC+TGG + Chr1:5080825-5080844 None:intergenic 30.0%
!! GATTATGTTGATGATTGTGT+TGG + Chr1:5075561-5075580 None:intergenic 30.0%
!! GTTGTTTTGTAAAAACCGTT+AGG - Chr1:5082868-5082887 MsG0180000373.01.T01:CDS 30.0%
!! TCAACTGTGTCATTTAACAT+GGG + Chr1:5077734-5077753 None:intergenic 30.0%
!! TGGTGTCATTTAATGAGATA+TGG + Chr1:5079245-5079264 None:intergenic 30.0%
!! TGTAAAAGACTAGAGTATTG+AGG + Chr1:5075862-5075881 None:intergenic 30.0%
!! TTCAATTTTTAAGAAGGGGA+GGG - Chr1:5079436-5079455 MsG0180000373.01.T01:intron 30.0%
!! TTGAAAGCATGTGAGATTTT+TGG + Chr1:5076866-5076885 None:intergenic 30.0%
!! TTTTGCTGACTAAAAACTCT+CGG - Chr1:5077286-5077305 MsG0180000373.01.T01:intron 30.0%
!!! AGGGGGTATATTTTGTTTTA+TGG - Chr1:5076300-5076319 MsG0180000373.01.T01:intron 30.0%
!!! CATTACATTGGTCAGTTTTT+TGG - Chr1:5077377-5077396 MsG0180000373.01.T01:intron 30.0%
!!! GTATTTTTTTTTGTCCCCTT+TGG - Chr1:5077047-5077066 MsG0180000373.01.T01:intron 30.0%
!!! GTTTAGTTTGGATCGATTTT+TGG + Chr1:5083185-5083204 None:intergenic 30.0%
!!! TGTTTTTCGAGAGTTTTGAA+GGG - Chr1:5079378-5079397 MsG0180000373.01.T01:intron 30.0%
!!! TTCGCTTTTTTTTATCGGTT+TGG + Chr1:5082810-5082829 None:intergenic 30.0%
!!! TTGTTTTTTCTCTCCATCTA+AGG + Chr1:5081822-5081841 None:intergenic 30.0%
AAAAACCTTAGTGCATTGCA+TGG + Chr1:5081275-5081294 None:intergenic 35.0%
AAAACCTTAGTGCATTGCAT+GGG + Chr1:5081274-5081293 None:intergenic 35.0%
AAATCCATAGCCTCTTGTAT+AGG + Chr1:5076544-5076563 None:intergenic 35.0%
AATAGTGCACATTGTCAACT+AGG - Chr1:5078189-5078208 MsG0180000373.01.T01:intron 35.0%
AGAAGAAAGTTGTGACATTG+TGG - Chr1:5078325-5078344 MsG0180000373.01.T01:intron 35.0%
AGATCAATTCATGGTACAAG+GGG - Chr1:5076282-5076301 MsG0180000373.01.T01:intron 35.0%
AGGTCATCCACATGAAATAA+AGG + Chr1:5081400-5081419 None:intergenic 35.0%
ATAAACTGCATGTCTTCTGA+TGG + Chr1:5083381-5083400 None:intergenic 35.0%
ATCAATCTTTGTGGGCTTAA+GGG + Chr1:5080253-5080272 None:intergenic 35.0%
ATCAGAAGACATGCAGTTTA+TGG - Chr1:5083380-5083399 MsG0180000373.01.T01:CDS 35.0%
ATCATAATCATGGCCCTAAA+CGG + Chr1:5083476-5083495 None:intergenic 35.0%
ATTAACAAGGCCTATACAAG+AGG - Chr1:5076531-5076550 MsG0180000373.01.T01:CDS 35.0%
CACTATATAGGAATCAGAGA+AGG - Chr1:5083275-5083294 MsG0180000373.01.T01:CDS 35.0%
CACTATATTTCTTCAGCAAG+TGG + Chr1:5082556-5082575 None:intergenic 35.0%
CAGCTAAATACACTTTGCAA+TGG - Chr1:5076583-5076602 MsG0180000373.01.T01:CDS 35.0%
CATAATCATCATCATCAAGG+AGG - Chr1:5075763-5075782 MsG0180000373.01.T01:CDS 35.0%
CCCACAAAGATTGATATATC+TGG - Chr1:5079923-5079942 MsG0180000373.01.T01:intron 35.0%
CTAAAAACTCTCGGGTTTAT+CGG - Chr1:5077295-5077314 MsG0180000373.01.T01:intron 35.0%
CTAGATCAATTCATGGTACA+AGG - Chr1:5076280-5076299 MsG0180000373.01.T01:intron 35.0%
CTTAAAGTATGGTCGAAAAG+TGG + Chr1:5080845-5080864 None:intergenic 35.0%
GAAATCTGATCTGATCCTAA+CGG + Chr1:5082886-5082905 None:intergenic 35.0%
GAAGTGTGAAAAAAGCAAAG+GGG + Chr1:5078844-5078863 None:intergenic 35.0%
GACAAAAGCTACTTAATTGG+TGG - Chr1:5082645-5082664 MsG0180000373.01.T01:intron 35.0%
GACAAGCATAACATGAAACT+TGG - Chr1:5083755-5083774 MsG0180000373.01.T01:five_prime_UTR 35.0%
GAGAACTAACTCATGTATGT+TGG + Chr1:5078393-5078412 None:intergenic 35.0%
GCAATGGAGTACAAGAAATT+TGG + Chr1:5075514-5075533 None:intergenic 35.0%
GCTATAGATATACGCGAATT+TGG + Chr1:5082293-5082312 None:intergenic 35.0%
GGGTTAGAAATTATCCTGAT+TGG + Chr1:5081096-5081115 None:intergenic 35.0%
GGTCATTTATTGTAGAACAG+AGG - Chr1:5078210-5078229 MsG0180000373.01.T01:intron 35.0%
GGTTCATAAATCAAAGGAAG+AGG - Chr1:5083346-5083365 MsG0180000373.01.T01:CDS 35.0%
GGTTGTAGGTTGTATTATCT+TGG - Chr1:5079564-5079583 MsG0180000373.01.T01:intron 35.0%
GTCAAACAGGTCATCTAATA+AGG + Chr1:5077913-5077932 None:intergenic 35.0%
TAGAAGTGATATCGGATACA+AGG + Chr1:5081425-5081444 None:intergenic 35.0%
TATAGTTGGCCAATATCAGA+TGG + Chr1:5078269-5078288 None:intergenic 35.0%
TATCAATCTTTGTGGGCTTA+AGG + Chr1:5080254-5080273 None:intergenic 35.0%
TATTTCACATGACCAATGCA+TGG + Chr1:5081976-5081995 None:intergenic 35.0%
TCACACTTCTTAAGAAAAGC+TGG - Chr1:5078855-5078874 MsG0180000373.01.T01:intron 35.0%
TCCAGAACTAGATCAATTCA+TGG - Chr1:5076273-5076292 MsG0180000373.01.T01:intron 35.0%
TCTATAGTTGTCCCAAAAGT+TGG + Chr1:5078719-5078738 None:intergenic 35.0%
TGAACATTATCACCAATGTC+GGG - Chr1:5083554-5083573 MsG0180000373.01.T01:CDS 35.0%
TGCTATAAGATCTCTCACAT+TGG - Chr1:5082176-5082195 MsG0180000373.01.T01:intron 35.0%
TGGTCGATAATTAGTACTCA+AGG + Chr1:5079310-5079329 None:intergenic 35.0%
TTATAACGTACCGAAGGATA+AGG + Chr1:5082689-5082708 None:intergenic 35.0%
TTCAAGAGAAAAAGAGGGTT+TGG - Chr1:5075971-5075990 MsG0180000373.01.T01:intron 35.0%
! AAAAACGTGTTTGGTTCACA+AGG + Chr1:5079827-5079846 None:intergenic 35.0%
! AAACCCTCTTTTTCTCTTGA+AGG + Chr1:5075972-5075991 None:intergenic 35.0%
! AACCCTCTTTTTCTCTTGAA+GGG + Chr1:5075971-5075990 None:intergenic 35.0%
! AAGTGTGATTTTGTGTGTGT+TGG + Chr1:5075232-5075251 None:intergenic 35.0%
! ACATCATGTGAAAGTTTTGC+TGG - Chr1:5075098-5075117 MsG0180000373.01.T01:three_prime_UTR 35.0%
! ACCATGAATTGATCTAGTTC+TGG + Chr1:5076277-5076296 None:intergenic 35.0%
! AGCTTACATGGATTGTCAAA+AGG - Chr1:5075882-5075901 MsG0180000373.01.T01:intron 35.0%
! AGTGTGATTTTGTGTGTGTT+GGG + Chr1:5075231-5075250 None:intergenic 35.0%
! ATATCAATCTTTGTGGGCTA+AGG + Chr1:5079920-5079939 None:intergenic 35.0%
! ATTTTGTGTGTGTTGGGTAA+AGG + Chr1:5075225-5075244 None:intergenic 35.0%
! CAAAATTGAGTTGTAAGGTG+AGG + Chr1:5082086-5082105 None:intergenic 35.0%
! CACTTGCTGAAGAAATATAG+TGG - Chr1:5082554-5082573 MsG0180000373.01.T01:CDS 35.0%
! GATGATAAAAATGAAGGCGT+TGG - Chr1:5082440-5082459 MsG0180000373.01.T01:intron 35.0%
! TATCAATCTTTGTGGGCTAA+GGG + Chr1:5079919-5079938 None:intergenic 35.0%
! TTGAGGATGAGCAATGATTT+TGG + Chr1:5075845-5075864 None:intergenic 35.0%
! TTTGCTGACTAAAAACTCTC+GGG - Chr1:5077287-5077306 MsG0180000373.01.T01:intron 35.0%
! TTTTGTGTGTGTTGGGTAAA+GGG + Chr1:5075224-5075243 None:intergenic 35.0%
!! GATATATGAAGCGTTGATAC+TGG - Chr1:5083493-5083512 MsG0180000373.01.T01:CDS 35.0%
!! GCAAGTGGTTTTTCAATTCA+CGG + Chr1:5082541-5082560 None:intergenic 35.0%
!! GTCAACTGTGTCATTTAACA+TGG + Chr1:5077735-5077754 None:intergenic 35.0%
!! GTCATATAATAATGGACGGA+AGG - Chr1:5078131-5078150 MsG0180000373.01.T01:intron 35.0%
!! GTTCAATTTTTAAGAAGGGG+AGG - Chr1:5079435-5079454 MsG0180000373.01.T01:intron 35.0%
!! TCAATTTTTAAGAAGGGGAG+GGG - Chr1:5079437-5079456 MsG0180000373.01.T01:intron 35.0%
!! TGTGGAGTAACTTTAGTTTG+TGG - Chr1:5084002-5084021 MsG0180000373.01.T01:five_prime_UTR 35.0%
!! TTACAAATGGCCTTATCCTT+CGG - Chr1:5082676-5082695 MsG0180000373.01.T01:intron 35.0%
!!! ATAGATTTTGGGCATTGACA+GGG + Chr1:5075138-5075157 None:intergenic 35.0%
!!! CTGTTTTTCGAGAGTTTTGA+AGG - Chr1:5079377-5079396 MsG0180000373.01.T01:intron 35.0%
!!! GTTTTTCGAGAGTTTTGAAG+GGG - Chr1:5079379-5079398 MsG0180000373.01.T01:intron 35.0%
!!! TATAGATTTTGGGCATTGAC+AGG + Chr1:5075139-5075158 None:intergenic 35.0%
!!! TGTGGTTTTAGACGTTGAAA+TGG - Chr1:5076454-5076473 MsG0180000373.01.T01:CDS 35.0%
AAAGTATGTTGGGGTTGGAT+TGG + Chr1:5077659-5077678 None:intergenic 40.0%
AACTTCAAGTATGTTGGGGT+TGG + Chr1:5077703-5077722 None:intergenic 40.0%
AAGTGTCCTTAGGCACTTAA+GGG + Chr1:5078640-5078659 None:intergenic 40.0%
AATCATCATCATCAAGGAGG+AGG - Chr1:5075766-5075785 MsG0180000373.01.T01:CDS 40.0%
ACAACAATGCTCCCTCTAAA+AGG + Chr1:5077105-5077124 None:intergenic 40.0%
ACAGAGTGCAGCTCTTTATA+TGG - Chr1:5083422-5083441 MsG0180000373.01.T01:CDS 40.0%
ACAGGTCATCTAATAAGGGA+CGG + Chr1:5077908-5077927 None:intergenic 40.0%
ACCAGCCGTAATTTGAGAAA+TGG - Chr1:5083525-5083544 MsG0180000373.01.T01:CDS 40.0%
ACTGAACTCTACCTTAGAGT+TGG - Chr1:5081661-5081680 MsG0180000373.01.T01:intron 40.0%
AGACATGCAGTTTATGGTGA+TGG - Chr1:5083386-5083405 MsG0180000373.01.T01:CDS 40.0%
AGGGAACTTCAAGTATGTTG+GGG + Chr1:5077707-5077726 None:intergenic 40.0%
AGTGCAGCTCTTTATATGGA+TGG - Chr1:5083426-5083445 MsG0180000373.01.T01:CDS 40.0%
ATATAAAGAGCTGCACTCTG+TGG + Chr1:5083423-5083442 None:intergenic 40.0%
ATTAGAGAGAGAAGAGAGAG+TGG + Chr1:5075055-5075074 None:intergenic 40.0%
ATTGGCTGAATCAACAGGTT+TGG - Chr1:5083302-5083321 MsG0180000373.01.T01:CDS 40.0%
CATGCTTGTGAAGTATAGAG+AGG - Chr1:5076507-5076526 MsG0180000373.01.T01:CDS 40.0%
CTCACATGCTTTCAAATCGT+GGG - Chr1:5076871-5076890 MsG0180000373.01.T01:intron 40.0%
CTCCTAATTCTCGAACCAAA+CGG - Chr1:5079892-5079911 MsG0180000373.01.T01:intron 40.0%
GAAAGTTGTGACATTGTGGT+TGG - Chr1:5078329-5078348 MsG0180000373.01.T01:intron 40.0%
GAACATTATCACCAATGTCG+GGG - Chr1:5083555-5083574 MsG0180000373.01.T01:CDS 40.0%
GAAGAATGTGAGAAGAGAGT+AGG + Chr1:5082716-5082735 None:intergenic 40.0%
GAAGAGGATCAAGAGAATAG+TGG - Chr1:5082470-5082489 MsG0180000373.01.T01:intron 40.0%
GAGAGATGAGTGAAGATGAT+TGG + Chr1:5075166-5075185 None:intergenic 40.0%
GAGGGAACTTCAAGTATGTT+GGG + Chr1:5077708-5077727 None:intergenic 40.0%
GATCAATTCATGGTACAAGG+GGG - Chr1:5076283-5076302 MsG0180000373.01.T01:intron 40.0%
GGAGATTTATAACGTACCGA+AGG + Chr1:5082695-5082714 None:intergenic 40.0%
GGTGGGAATTGCATTACAAA+TGG - Chr1:5082663-5082682 MsG0180000373.01.T01:intron 40.0%
GTCATTTAACATGGGTAGGA+GGG + Chr1:5077726-5077745 None:intergenic 40.0%
GTGAGTCAATAACCATGCAT+TGG - Chr1:5081961-5081980 MsG0180000373.01.T01:intron 40.0%
GTGGTTGACAAGACTTTGTT+TGG + Chr1:5074994-5075013 None:intergenic 40.0%
TAAAACGGAAATCCACACGT+TGG - Chr1:5077178-5077197 MsG0180000373.01.T01:intron 40.0%
TATGTGTGTCTGAGTCAACT+AGG - Chr1:5078109-5078128 MsG0180000373.01.T01:intron 40.0%
TCCATTTCTCAAATTACGGC+TGG + Chr1:5083529-5083548 None:intergenic 40.0%
TCGGTTTCGAAGGATTCATT+GGG - Chr1:5077314-5077333 MsG0180000373.01.T01:intron 40.0%
TCTCACATGCTTTCAAATCG+TGG - Chr1:5076870-5076889 MsG0180000373.01.T01:intron 40.0%
TCTTGCTAACAAGTGTCCTT+AGG + Chr1:5078650-5078669 None:intergenic 40.0%
TGCCCTTCAAGAGAAAAAGA+GGG - Chr1:5075966-5075985 MsG0180000373.01.T01:intron 40.0%
TGGATGGTTAGAAATAGGGA+CGG - Chr1:5079071-5079090 MsG0180000373.01.T01:intron 40.0%
TTACGCTTGGGCATATGTTA+AGG - Chr1:5077446-5077465 MsG0180000373.01.T01:intron 40.0%
TTCTATCCTGAGTATAGGCT+GGG + Chr1:5081116-5081135 None:intergenic 40.0%
TTCTTGTACTCCATTGCTAG+TGG - Chr1:5075517-5075536 MsG0180000373.01.T01:three_prime_UTR 40.0%
TTGGGCAAATGTTTACGCTT+GGG - Chr1:5077434-5077453 MsG0180000373.01.T01:intron 40.0%
TTTCTATCCTGAGTATAGGC+TGG + Chr1:5081117-5081136 None:intergenic 40.0%
TTTGGGCAAATGTTTACGCT+TGG - Chr1:5077433-5077452 MsG0180000373.01.T01:intron 40.0%
TTTGTGTGTGTTGGGTAAAG+GGG + Chr1:5075223-5075242 None:intergenic 40.0%
! AATGCTCCCTCTAAAAGGAT+AGG + Chr1:5077100-5077119 None:intergenic 40.0%
! AGCTTTTGTCTAGCCTCTTT+AGG + Chr1:5082635-5082654 None:intergenic 40.0%
! ATCGGTTTCGAAGGATTCAT+TGG - Chr1:5077313-5077332 MsG0180000373.01.T01:intron 40.0%
! CTAAGCAAGAGTTTGAAGCA+AGG - Chr1:5076212-5076231 MsG0180000373.01.T01:intron 40.0%
! CTTGTTATCTTGTGCCCTTA+GGG + Chr1:5077590-5077609 None:intergenic 40.0%
! GAAGGATTCATTGGGTTTTG+TGG - Chr1:5077322-5077341 MsG0180000373.01.T01:intron 40.0%
! GGCTGTTCCTTTATTTCATG+TGG - Chr1:5081390-5081409 MsG0180000373.01.T01:intron 40.0%
! GTCTGTTTGGTTCGAGAATT+AGG + Chr1:5079897-5079916 None:intergenic 40.0%
! GTTTGGTTCGAGAATTAGGA+GGG + Chr1:5079893-5079912 None:intergenic 40.0%
! TAAATCAAAGGAAGAGGCAC+TGG - Chr1:5083352-5083371 MsG0180000373.01.T01:CDS 40.0%
! TCGAGTGTTTCTGAACATAC+TGG - Chr1:5076831-5076850 MsG0180000373.01.T01:intron 40.0%
! TCTTGTTATCTTGTGCCCTT+AGG + Chr1:5077591-5077610 None:intergenic 40.0%
! TCTTTTTCTCTTGAAGGGCA+GGG + Chr1:5075966-5075985 None:intergenic 40.0%
! TGGTATTTGGAGTGCTCATA+AGG - Chr1:5084022-5084041 MsG0180000373.01.T01:five_prime_UTR 40.0%
! TGTCATTTAACATGGGTAGG+AGG + Chr1:5077727-5077746 None:intergenic 40.0%
! TGTTGCTGTTGTACTTGATC+AGG + Chr1:5075637-5075656 None:intergenic 40.0%
! TGTTTGGTTCGAGAATTAGG+AGG + Chr1:5079894-5079913 None:intergenic 40.0%
! TTCGATTTGCACTGTGATGT+CGG - Chr1:5076397-5076416 MsG0180000373.01.T01:intron 40.0%
! TTGGTTGTTTCCACTAGCAA+TGG + Chr1:5075530-5075549 None:intergenic 40.0%
! TTTGGTTCGAGAATTAGGAG+GGG + Chr1:5079892-5079911 None:intergenic 40.0%
!! ACTCTAAGGTAGAGTTCAGT+CGG + Chr1:5081661-5081680 None:intergenic 40.0%
!! AGCAAAGGGGTGTTACATTA+AGG + Chr1:5078831-5078850 None:intergenic 40.0%
!! ATGCAGTTTATGGTGATGGA+TGG - Chr1:5083390-5083409 MsG0180000373.01.T01:CDS 40.0%
!! ATTCCTTAACTTGTGCCCTA+AGG - Chr1:5077572-5077591 MsG0180000373.01.T01:intron 40.0%
!! CTGTGTCATTTAACATGGGT+AGG + Chr1:5077730-5077749 None:intergenic 40.0%
!! GCAAAGGGGTGTTACATTAA+GGG + Chr1:5078830-5078849 None:intergenic 40.0%
!! GTTGATGATTGTGTTGGTGT+TGG + Chr1:5075555-5075574 None:intergenic 40.0%
!! TGGTTCGGTTCAGTTTAGTT+TGG + Chr1:5082926-5082945 None:intergenic 40.0%
!! TTCCTTAACTTGTGCCCTAA+GGG - Chr1:5077573-5077592 MsG0180000373.01.T01:intron 40.0%
!!! GTCTATCATTTTGGGACAGT+GGG - Chr1:5080691-5080710 MsG0180000373.01.T01:intron 40.0%
AACCAGCAATGTCTTGGAGA+TGG + Chr1:5075019-5075038 None:intergenic 45.0%
AAGGCCTATACAAGAGGCTA+TGG - Chr1:5076537-5076556 MsG0180000373.01.T01:CDS 45.0%
AATCATGGCCCTAAACGGTA+GGG + Chr1:5083471-5083490 None:intergenic 45.0%
AATTACGCACTCCTACACTC+TGG - Chr1:5083871-5083890 MsG0180000373.01.T01:five_prime_UTR 45.0%
ACCAGCAATGTCTTGGAGAT+GGG + Chr1:5075018-5075037 None:intergenic 45.0%
AGAACAGAGGGAGTAGTACT+TGG - Chr1:5078223-5078242 MsG0180000373.01.T01:intron 45.0%
AGAGGATCGTTGCATACTCA+AGG - Chr1:5079284-5079303 MsG0180000373.01.T01:intron 45.0%
AGTCCAAACCAGCAATGTCT+TGG + Chr1:5075025-5075044 None:intergenic 45.0%
ATGGTTAGAAATAGGGACGG+AGG - Chr1:5079074-5079093 MsG0180000373.01.T01:intron 45.0%
ATGTCTCTCGATGTGATGCA+CGG - Chr1:5081368-5081387 MsG0180000373.01.T01:intron 45.0%
CAAGTGTCCTTAGGCACTTA+AGG + Chr1:5078641-5078660 None:intergenic 45.0%
CACACACGACTCATTTAAGG+TGG + Chr1:5083986-5084005 None:intergenic 45.0%
CACCTTAAATGAGTCGTGTG+TGG - Chr1:5083984-5084003 MsG0180000373.01.T01:five_prime_UTR 45.0%
CATGTATGTTGGGTAGCACT+TGG + Chr1:5078382-5078401 None:intergenic 45.0%
CTCCACACACGACTCATTTA+AGG + Chr1:5083989-5084008 None:intergenic 45.0%
CTGCCCTTCAAGAGAAAAAG+AGG - Chr1:5075965-5075984 MsG0180000373.01.T01:intron 45.0%
GAACAGAGGGAGTAGTACTT+GGG - Chr1:5078224-5078243 MsG0180000373.01.T01:intron 45.0%
GAGGATCAAGAGAATAGTGG+TGG - Chr1:5082473-5082492 MsG0180000373.01.T01:intron 45.0%
GAGTAGTACTTGGGTGACAT+TGG - Chr1:5078233-5078252 MsG0180000373.01.T01:intron 45.0%
GATGGTCATTACATGGCTGA+TGG - Chr1:5083444-5083463 MsG0180000373.01.T01:CDS 45.0%
GGAATCAGAGAAGGTAGCAT+TGG - Chr1:5083284-5083303 MsG0180000373.01.T01:CDS 45.0%
GGAGGGAACTTCAAGTATGT+TGG + Chr1:5077709-5077728 None:intergenic 45.0%
GTAGAGTTCAGTCGGAAGTA+AGG + Chr1:5081653-5081672 None:intergenic 45.0%
GTCATCTAATAAGGGACGGA+GGG + Chr1:5077904-5077923 None:intergenic 45.0%
GTGATATCGGATACAAGGTC+AGG + Chr1:5081420-5081439 None:intergenic 45.0%
GTGCCAATGCCATCTGATAT+TGG - Chr1:5078257-5078276 MsG0180000373.01.T01:intron 45.0%
GTGTTACATTAAGGGACGGA+GGG + Chr1:5078822-5078841 None:intergenic 45.0%
GTTTGATGCACCAACGAGAT+AGG + Chr1:5081185-5081204 None:intergenic 45.0%
TAATCATGGCCCTAAACGGT+AGG + Chr1:5083472-5083491 None:intergenic 45.0%
TATGTAGATTGGAGCTCCAC+CGG - Chr1:5076165-5076184 MsG0180000373.01.T01:intron 45.0%
TGGCCAATATCAGATGGCAT+TGG + Chr1:5078263-5078282 None:intergenic 45.0%
TGGGATGAGCCTACTAACTT+CGG + Chr1:5082273-5082292 None:intergenic 45.0%
TGGTTAGAAATAGGGACGGA+GGG - Chr1:5079075-5079094 MsG0180000373.01.T01:intron 45.0%
TGTCACTGATGTGTGAGTGA+CGG - Chr1:5076781-5076800 MsG0180000373.01.T01:intron 45.0%
TTCAAATCGTGGGAGCAGAA+GGG - Chr1:5076881-5076900 MsG0180000373.01.T01:intron 45.0%
TTCTAACCCAGCCTATACTC+AGG - Chr1:5081107-5081126 MsG0180000373.01.T01:intron 45.0%
TTTCAAATCGTGGGAGCAGA+AGG - Chr1:5076880-5076899 MsG0180000373.01.T01:intron 45.0%
! ATGTTGGGGTTGGATTGGAA+TGG + Chr1:5077654-5077673 None:intergenic 45.0%
! CGTTTGGTTCGAGAATTAGG+AGG + Chr1:5080228-5080247 None:intergenic 45.0%
! CTCTTTTTCTCTTGAAGGGC+AGG + Chr1:5075967-5075986 None:intergenic 45.0%
! GTCCGTTTGGTTCGAGAATT+AGG + Chr1:5080231-5080250 None:intergenic 45.0%
! TCTCCAAGACATTGCTGGTT+TGG - Chr1:5075019-5075038 MsG0180000373.01.T01:three_prime_UTR 45.0%
! TGCGTTTGATGGTCAGGATA+GGG + Chr1:5081251-5081270 None:intergenic 45.0%
!! AGGGGTGTTACATTAAGGGA+CGG + Chr1:5078826-5078845 None:intergenic 45.0%
!! GATTGTGTTGGTGTTGGTGT+TGG + Chr1:5075549-5075568 None:intergenic 45.0%
!! GTAGCATTGGCTGAATCAAC+AGG - Chr1:5083297-5083316 MsG0180000373.01.T01:CDS 45.0%
!!! GGTCTATCATTTTGGGACAG+TGG - Chr1:5080690-5080709 MsG0180000373.01.T01:intron 45.0%
!!! TTTCGAGAGTTTTGAAGGGG+AGG - Chr1:5079382-5079401 MsG0180000373.01.T01:intron 45.0%
!! CAATAATAAATATTATTATA+AGG + Chr1:5079532-5079551 None:intergenic 5.0%
!! TAAAATATATATAAAAAATG+GGG + Chr1:5076111-5076130 None:intergenic 5.0%
!!! ATTTTAATAAAAAGTATATT+TGG + Chr1:5080734-5080753 None:intergenic 5.0%
!!! CTTTTTATTAAAATTATTAT+TGG - Chr1:5080740-5080759 MsG0180000373.01.T01:intron 5.0%
!!! TACTTTTTTTTTTTTTTTTA+AGG - Chr1:5077673-5077692 MsG0180000373.01.T01:intron 5.0%
!!! TTATTATTGTTATTATTATT+AGG - Chr1:5079543-5079562 MsG0180000373.01.T01:intron 5.0%
AACATAGAGTCGCCAACGTG+TGG + Chr1:5077193-5077212 None:intergenic 50.0%
AATTCACGGTCTTCTGCTCG+AGG + Chr1:5082527-5082546 None:intergenic 50.0%
ACACGTTGGCGACTCTATGT+TGG - Chr1:5077192-5077211 MsG0180000373.01.T01:intron 50.0%
AGAGAGAGAAGAGAGAGTGG+TGG + Chr1:5075052-5075071 None:intergenic 50.0%
AGTTGTCACCACCAGAGTGT+AGG + Chr1:5083885-5083904 None:intergenic 50.0%
CAAGTGCCCTTAAGTGCCTA+AGG - Chr1:5078631-5078650 MsG0180000373.01.T01:intron 50.0%
CACGTTGGCGACTCTATGTT+GGG - Chr1:5077193-5077212 MsG0180000373.01.T01:intron 50.0%
CACTTTGCAATGGACCCCTT+CGG - Chr1:5076593-5076612 MsG0180000373.01.T01:CDS 50.0%
CAGCAATGTCTTGGAGATGG+GGG + Chr1:5075016-5075035 None:intergenic 50.0%
CATCACATCGAGAGACATGC+GGG + Chr1:5081366-5081385 None:intergenic 50.0%
CATCATCATCAAGGAGGAGG+AGG - Chr1:5075769-5075788 MsG0180000373.01.T01:CDS 50.0%
CATTATCACCAATGTCGGGG+TGG - Chr1:5083558-5083577 MsG0180000373.01.T01:CDS 50.0%
CATTGCATGGGTGCGTTTGA+TGG + Chr1:5081262-5081281 None:intergenic 50.0%
CCAGCAATGTCTTGGAGATG+GGG + Chr1:5075017-5075036 None:intergenic 50.0%
CTGATGGTCCCTACCGTTTA+GGG - Chr1:5083460-5083479 MsG0180000373.01.T01:CDS 50.0%
GCATCACATCGAGAGACATG+CGG + Chr1:5081367-5081386 None:intergenic 50.0%
GCTTCACCACTAGAACTGCT+TGG + Chr1:5075808-5075827 None:intergenic 50.0%
GGTCATCTAATAAGGGACGG+AGG + Chr1:5077905-5077924 None:intergenic 50.0%
GTCACTGATGTGTGAGTGAC+GGG - Chr1:5076782-5076801 MsG0180000373.01.T01:intron 50.0%
GTTCGAGAATTAGGAGGGGA+GGG + Chr1:5079888-5079907 None:intergenic 50.0%
TCTGCTCGAGGATCAATCTC+TGG + Chr1:5082515-5082534 None:intergenic 50.0%
TGCCCTTAGGGCACAAGTTA+AGG + Chr1:5077578-5077597 None:intergenic 50.0%
TGTCTCTCGATGTGATGCAC+GGG - Chr1:5081369-5081388 MsG0180000373.01.T01:intron 50.0%
TTCGAGAATTAGGAGGGGAG+GGG + Chr1:5079887-5079906 None:intergenic 50.0%
! AGGGAGGGGAGGGATTTTAA+CGG + Chr1:5080197-5080216 None:intergenic 50.0%
! CAGAACTCAGGAGCTAGCTT+TGG + Chr1:5077228-5077247 None:intergenic 50.0%
! GGTGTTACATTAAGGGACGG+AGG + Chr1:5078823-5078842 None:intergenic 50.0%
! GTGCGTTTGATGGTCAGGAT+AGG + Chr1:5081252-5081271 None:intergenic 50.0%
! GTGTTTGGTTCACAAGGCGA+GGG + Chr1:5079821-5079840 None:intergenic 50.0%
! TGTTTGGTTCACAAGGCGAG+GGG + Chr1:5079820-5079839 None:intergenic 50.0%
! TTGTGGGCTAAGGGTCTGTT+TGG + Chr1:5079910-5079929 None:intergenic 50.0%
!! AGGCGTTGGTTCATCAGAAG+AGG - Chr1:5082454-5082473 MsG0180000373.01.T01:intron 50.0%
!! AGGGATTTTAACGGAGGGGA+GGG + Chr1:5079864-5079883 None:intergenic 50.0%
!! AGGGGAGGGATTTTAACGGA+GGG + Chr1:5079869-5079888 None:intergenic 50.0%
!! CTCGGGTTTATCGGTTTCGA+AGG - Chr1:5077304-5077323 MsG0180000373.01.T01:intron 50.0%
!! TTTTAAGAAGGGGAGGGGAG+AGG - Chr1:5079442-5079461 MsG0180000373.01.T01:intron 50.0%
!!! AGAGTTTTGAAGGGGAGGAG+AGG - Chr1:5079387-5079406 MsG0180000373.01.T01:intron 50.0%
!!! AGTTTTGAAGGGGAGGAGAG+GGG - Chr1:5079389-5079408 MsG0180000373.01.T01:intron 50.0%
!!! GAGTTTTGAAGGGGAGGAGA+GGG - Chr1:5079388-5079407 MsG0180000373.01.T01:intron 50.0%
!!! GATTTTGGGCATTGACAGGG+TGG + Chr1:5075135-5075154 None:intergenic 50.0%
AATCGTGGGAGCAGAAGGGT+AGG - Chr1:5076885-5076904 MsG0180000373.01.T01:intron 55.0%
ACCAAACGAGCCACCACTTC+CGG + Chr1:5076187-5076206 None:intergenic 55.0%
ACTCACCAGGGAAGATCCGA+AGG + Chr1:5076612-5076631 None:intergenic 55.0%
AGAATTAGGAGGGGAGGGGA+AGG + Chr1:5079883-5079902 None:intergenic 55.0%
AGAATTAGGAGGGGAGGGGA+GGG + Chr1:5079883-5079902 None:intergenic 55.0%
ATCGTGGGAGCAGAAGGGTA+GGG - Chr1:5076886-5076905 MsG0180000373.01.T01:intron 55.0%
CAATGTCTTGGAGATGGGGG+TGG + Chr1:5075013-5075032 None:intergenic 55.0%
CATCATCAAGGAGGAGGAGG+AGG - Chr1:5075772-5075791 MsG0180000373.01.T01:CDS 55.0%
CCCCATCTCCAAGACATTGC+TGG - Chr1:5075014-5075033 MsG0180000373.01.T01:three_prime_UTR 55.0%
CGCACCCATGCAATGCACTA+AGG - Chr1:5081267-5081286 MsG0180000373.01.T01:intron 55.0%
CTCACCAGGGAAGATCCGAA+GGG + Chr1:5076611-5076630 None:intergenic 55.0%
GAATTAGGAGGGGAGGGGAA+GGG + Chr1:5080216-5080235 None:intergenic 55.0%
GATGGTCAGGATAGGGAGAC+AGG + Chr1:5081244-5081263 None:intergenic 55.0%
GCTGATGGTCCCTACCGTTT+AGG - Chr1:5083459-5083478 MsG0180000373.01.T01:CDS 55.0%
GGTTCGAGAATTAGGAGGGG+AGG + Chr1:5079889-5079908 None:intergenic 55.0%
TACGCACTCCTACACTCTGG+TGG - Chr1:5083874-5083893 MsG0180000373.01.T01:five_prime_UTR 55.0%
TATCACCAATGTCGGGGTGG+TGG - Chr1:5083561-5083580 MsG0180000373.01.T01:CDS 55.0%
TCACCAGGGAAGATCCGAAG+GGG + Chr1:5076610-5076629 None:intergenic 55.0%
TGTGGGCTTAAGGGTCCGTT+TGG + Chr1:5080244-5080263 None:intergenic 55.0%
! CATGGGTGCGTTTGATGGTC+AGG + Chr1:5081257-5081276 None:intergenic 55.0%
! CGTGTTTGGTTCACAAGGCG+AGG + Chr1:5079822-5079841 None:intergenic 55.0%
! GGGAGTCCAAGCAGTTCTAG+TGG - Chr1:5075799-5075818 MsG0180000373.01.T01:intron 55.0%
! GGGGAGGGGAGGGATTTTAA+CGG + Chr1:5079873-5079892 None:intergenic 55.0%
!! GAGGGATTTTAACGGAGGGG+AGG + Chr1:5079865-5079884 None:intergenic 55.0%
!! GAGGGGAGGGATTTTAACGG+AGG + Chr1:5079870-5079889 None:intergenic 55.0%
!! GGGATTTTAACGGAGGGGAG+GGG + Chr1:5079863-5079882 None:intergenic 55.0%
!! GGGGAGGGATTTTAACGGAG+GGG + Chr1:5079868-5079887 None:intergenic 55.0%
AAACGAGCCACCACTTCCGG+TGG + Chr1:5076184-5076203 None:intergenic 60.0%
AAGAAGGGGAGGGGAGAGGA+AGG - Chr1:5079446-5079465 MsG0180000373.01.T01:intron 60.0%
AAGGAGGAGGAGGAGGAGGA+GGG - Chr1:5075779-5075798 MsG0180000373.01.T01:CDS 60.0%
ACCGGAAGTGGTGGCTCGTT+TGG - Chr1:5076183-5076202 MsG0180000373.01.T01:intron 60.0%
AGAAGGGGAGGGGAGAGGAA+GGG - Chr1:5079447-5079466 MsG0180000373.01.T01:intron 60.0%
CATCAAGGAGGAGGAGGAGG+AGG - Chr1:5075775-5075794 MsG0180000373.01.T01:CDS 60.0%
GAGAATTAGGAGGGGAGGGG+AGG + Chr1:5079884-5079903 None:intergenic 60.0%
GATTGGAGCTCCACCGGAAG+TGG - Chr1:5076171-5076190 MsG0180000373.01.T01:intron 60.0%
TCCAACCACCACCCCGACAT+TGG + Chr1:5083569-5083588 None:intergenic 60.0%
TTGGTTCACAAGGCGAGGGG+AGG + Chr1:5079817-5079836 None:intergenic 60.0%
! ACCAATGTCGGGGTGGTGGT+TGG - Chr1:5083565-5083584 MsG0180000373.01.T01:CDS 60.0%
!! GGGCATTGACAGGGTGGAGA+AGG + Chr1:5075129-5075148 None:intergenic 60.0%
CAAGGAGGAGGAGGAGGAGG+AGG - Chr1:5075778-5075797 MsG0180000373.01.T01:CDS 65.0%
GGACCCCTTCGGATCTTCCC+TGG - Chr1:5076604-5076623 MsG0180000373.01.T01:CDS 65.0%
TAGGAGGGGAGGGGAAGGGA+GGG + Chr1:5080212-5080231 None:intergenic 65.0%
TGGAGCTCCACCGGAAGTGG+TGG - Chr1:5076174-5076193 MsG0180000373.01.T01:intron 65.0%
TTAGGAGGGGAGGGGAAGGG+AGG + Chr1:5080213-5080232 None:intergenic 65.0%
AGGAGGGGAGGGGAAGGGAG+GGG + Chr1:5080211-5080230 None:intergenic 70.0%
AGGGGAGGGGAAGGGAGGGG+AGG + Chr1:5080208-5080227 None:intergenic 75.0%
GGGGAGGGGAAGGGAGGGGA+GGG + Chr1:5080207-5080226 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr1 gene 5074989 5084112 5074989 ID=MsG0180000373.01;Name=MsG0180000373.01
Chr1 mRNA 5074989 5084112 5074989 ID=MsG0180000373.01.T01;Parent=MsG0180000373.01;Name=MsG0180000373.01.T01;_AED=0.49;_eAED=0.49;_QI=471|1|1|1|1|1|5|624|386
Chr1 exon 5083198 5084112 5083198 ID=MsG0180000373.01.T01:exon:5098;Parent=MsG0180000373.01.T01
Chr1 exon 5082807 5082929 5082807 ID=MsG0180000373.01.T01:exon:5099;Parent=MsG0180000373.01.T01
Chr1 exon 5082476 5082608 5082476 ID=MsG0180000373.01.T01:exon:5100;Parent=MsG0180000373.01.T01
Chr1 exon 5076404 5076660 5076404 ID=MsG0180000373.01.T01:exon:5101;Parent=MsG0180000373.01.T01
Chr1 exon 5074989 5075816 5074989 ID=MsG0180000373.01.T01:exon:5102;Parent=MsG0180000373.01.T01
Chr1 five_prime_UTR 5083642 5084112 5083642 ID=MsG0180000373.01.T01:five_prime_utr;Parent=MsG0180000373.01.T01
Chr1 CDS 5083198 5083641 5083198 ID=MsG0180000373.01.T01:cds;Parent=MsG0180000373.01.T01
Chr1 CDS 5082807 5082929 5082807 ID=MsG0180000373.01.T01:cds;Parent=MsG0180000373.01.T01
Chr1 CDS 5082476 5082608 5082476 ID=MsG0180000373.01.T01:cds;Parent=MsG0180000373.01.T01
Chr1 CDS 5076404 5076660 5076404 ID=MsG0180000373.01.T01:cds;Parent=MsG0180000373.01.T01
Chr1 CDS 5075613 5075816 5075613 ID=MsG0180000373.01.T01:cds;Parent=MsG0180000373.01.T01
Chr1 three_prime_UTR 5074989 5075612 5074989 ID=MsG0180000373.01.T01:three_prime_utr;Parent=MsG0180000373.01.T01
Gene Sequence

>MsG0180000373.01.T01

ATGGAGGAATACACTAATAATCCAAATCCAAATTCAAATCAAAGTTCAAGGCCAAATTTCTTGTACTCCATTGCTAGTGGAAACAACCAACACCAACACCAACACAATCATCAACATAATCAGATTCCAATGAACAACTTTCTTCAATCAAGTGGATCAGACAATTGTTTTCAACCTGATCAAGTACAACAGCAACACTCTGCTGTGAAAACTGAAGCAAATAGTACTTCACAACTTCACACTCCGATTTTTCATTACCCAGCTTTAATGAGAACAAATATTATTCCACACACCAATATTATGCATAATCATCATCATCAAGGAGGAGGAGGAGGAGGAGGGAGTCCAAGCAGTTCTAGTGGTGAAGCTGAAGCTATAAAAGCCAAAATCATTGCTCATCCTCAATACTCTAGTCTTTTACAAGCTTACATGGATTGTCAAAAGATTGGAGCTCCACCGGAAGTGGTGGCTCGTTTGGTTGCGTCTAAGCAAGAGTTTGAAGCAAGGCAAAGATCTTCAGTTAACTCAAGAGAAGCTTCTAAAGATCCAGAACTAGATCAATTCATGGAAGCATATTATGACATGCTTGTGAAGTATAGAGAGGAATTAACAAGGCCTATACAAGAGGCTATGGATTTCATGAGAAGAATAGAAACTCAGCTAAATACACTTTGCAATGGACCCCTTCGGATCTTCCCTGATGATAAAAATGAAGGCGTTGGTTCATCAGAAGAGGATCAAGAGAATAGTGGTGGAGAAACAGATCAACTTCCAGAGATTGATCCTCGAGCAGAAGACCGTGAATTGAAAAACCACTTGCTGAAGAAATATAGTGGTTACTTGAGTAGTCTTAAGCAAGAACTTTCCAAGAAGAAAAAGAAAGGAAAATTACCTAAAGAGGCTAGACAAAAGCTACTTAATTGGTGGGAATTGCATTACAAATGGCCTTATCCTTCGGAATCAGAGAAGGTAGCATTGGCTGAATCAACAGGTTTGGACCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCAGAAGACATGCAGTTTATGGTGATGGATGGACTGCATCCACAGAGTGCAGCTCTTTATATGGATGGTCATTACATGGCTGATGGTCCCTACCGTTTAGGGCCATGA
Protein sequence

>MsG0180000373.01.T01

MEEYTNNPNPNSNQSSRPNFLYSIASGNNQHQHQHNHQHNQIPMNNFLQSSGSDNCFQPDQVQQQHSAVKTEANSTSQLHTPIFHYPALMRTNIIPHTNIMHNHHHQGGGGGGGSPSSSSGEAEAIKAKIIAHPQYSSLLQAYMDCQKIGAPPEVVARLVASKQEFEARQRSSVNSREASKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNTLCNGPLRIFPDDKNEGVGSSEEDQENSGGETDQLPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKEARQKLLNWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLHPQSAALYMDGHYMADGPYRLGP*