AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010814.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010814.01.T01 MTR_2g091110 66.791 536 95 7 3 462 773 1301 0.0 607
MsG0280010814.01.T01 MTR_2g091110 50.000 180 86 3 3 180 731 908 5.71e-31 127
MsG0280010814.01.T01 MTR_2g091110 42.029 207 74 4 4 180 648 838 4.88e-24 106
MsG0280010814.01.T01 MTR_2g091110 35.659 258 118 5 4 219 487 738 6.37e-21 96.7
MsG0280010814.01.T01 MTR_2g091110 36.752 234 129 5 3 219 577 808 1.36e-19 92.8
MsG0280010814.01.T01 MTR_2g091110 38.342 193 88 4 3 167 335 524 6.49e-13 71.6
MsG0280010814.01.T01 MTR_2g091110 34.146 205 93 4 7 169 255 459 3.74e-11 66.2
MsG0280010814.01.T01 MTR_5g078510 59.615 520 136 7 1 462 42 545 0.0 522
MsG0280010814.01.T01 MTR_5g078510 50.526 95 46 1 73 166 1 95 4.14e-14 74.7
MsG0280010814.01.T01 MTR_5g078510 35.789 190 56 4 44 183 2 175 9.81e-12 67.4
MsG0280010814.01.T01 MTR_2g091090 59.382 453 138 6 33 463 226 654 7.49e-154 452
MsG0280010814.01.T01 MTR_2g091240 57.616 453 166 6 32 462 142 590 6.74e-152 445
MsG0280010814.01.T01 MTR_2g091250 52.324 581 154 11 3 462 716 1294 2.55e-147 452
MsG0280010814.01.T01 MTR_2g091250 41.553 219 113 4 4 207 535 753 1.64e-25 110
MsG0280010814.01.T01 MTR_2g091250 42.211 199 83 4 1 169 378 574 2.82e-23 103
MsG0280010814.01.T01 MTR_2g091250 42.408 191 84 3 3 180 646 823 2.71e-18 88.6
MsG0280010814.01.T01 MTR_2g091250 44.571 175 86 5 4 169 605 777 2.94e-18 88.6
MsG0280010814.01.T01 MTR_2g091250 35.496 262 108 8 35 235 332 593 3.00e-16 82.4
MsG0280010814.01.T01 MTR_2g091250 40.884 181 65 3 33 187 239 403 1.53e-15 80.1
MsG0280010814.01.T01 MTR_2g091105 56.376 447 179 4 32 462 241 687 4.24e-135 405
MsG0280010814.01.T01 MTR_2g091260 57.238 449 148 7 39 462 447 876 3.81e-134 408
MsG0280010814.01.T01 MTR_2g091260 41.176 153 77 2 30 169 270 422 1.68e-15 79.7
MsG0280010814.01.T01 MTR_6g045183 52.024 494 197 9 3 462 280 767 6.56e-133 402
MsG0280010814.01.T01 MTR_2g091245 50.106 471 205 8 9 462 203 660 1.07e-120 367
MsG0280010814.01.T01 MTR_2g010420 49.269 479 220 12 3 462 365 839 1.04e-118 367
MsG0280010814.01.T01 MTR_2g010420 44.872 156 82 3 15 168 307 460 1.39e-20 95.5
MsG0280010814.01.T01 MTR_2g091290 44.088 499 219 7 4 444 323 819 9.19e-107 335
MsG0280010814.01.T01 MTR_2g091290 42.446 139 77 2 32 169 310 446 1.01e-17 86.7
MsG0280010814.01.T01 MTR_2g091025 46.667 450 202 8 1 420 135 576 2.11e-104 322
MsG0280010814.01.T01 MTR_2g091080 57.995 369 92 6 1 362 449 761 1.83e-103 325
MsG0280010814.01.T01 MTR_2g091080 42.029 138 63 2 33 169 258 379 1.15e-14 77.0
MsG0280010814.01.T01 MTR_2g091080 33.824 204 110 5 7 187 245 446 5.11e-12 68.6
MsG0280010814.01.T01 MTR_2g091370 47.034 472 209 9 3 461 394 837 5.73e-103 326
MsG0280010814.01.T01 MTR_3g110385 46.250 480 204 11 3 433 332 806 2.98e-93 300
MsG0280010814.01.T01 MTR_3g110385 41.040 173 91 4 4 167 228 398 6.67e-17 84.0
MsG0280010814.01.T01 MTR_3g110385 41.758 182 72 4 33 180 216 397 9.10e-16 80.5
MsG0280010814.01.T01 MTR_2g093010 48.964 386 137 9 32 381 479 840 4.19e-86 281
MsG0280010814.01.T01 MTR_2g093010 46.043 139 72 2 32 169 311 447 3.92e-15 78.6
MsG0280010814.01.T01 MTR_2g093010 48.964 386 137 9 32 381 480 841 4.45e-86 281
MsG0280010814.01.T01 MTR_2g093010 46.043 139 72 2 32 169 312 448 3.78e-15 78.6
MsG0280010814.01.T01 MTR_2g091015 46.530 389 144 8 30 372 511 881 7.82e-80 265
MsG0280010814.01.T01 MTR_2g091015 52.713 129 58 2 32 159 278 404 8.18e-21 96.3
MsG0280010814.01.T01 MTR_2g091015 39.205 176 86 3 3 169 388 551 2.42e-15 79.3
MsG0280010814.01.T01 MTR_2g091015 33.468 248 103 8 4 191 291 536 6.05e-13 71.6
MsG0280010814.01.T01 MTR_2g091015 41.667 156 61 5 44 169 203 358 4.12e-11 65.9
MsG0280010814.01.T01 MTR_5g038810 45.989 374 170 7 12 376 149 499 7.90e-78 256
MsG0280010814.01.T01 MTR_2g091030 49.419 344 140 8 34 359 261 588 1.96e-70 234
MsG0280010814.01.T01 MTR_2g091335 49.711 346 145 7 31 359 271 604 8.84e-70 233
MsG0280010814.01.T01 MTR_2g010420 44.681 376 186 11 3 359 365 737 3.15e-69 234
MsG0280010814.01.T01 MTR_2g010420 44.872 156 82 3 15 168 307 460 1.80e-20 95.1
MsG0280010814.01.T01 MTR_2g091070 59.615 208 83 1 214 420 2 209 3.07e-67 214
MsG0280010814.01.T01 MTR_2g104190 43.257 393 144 9 15 405 307 622 6.54e-67 226
MsG0280010814.01.T01 MTR_2g091285 45.455 341 168 6 34 359 252 589 6.64e-64 217
MsG0280010814.01.T01 MTR_2g090980 49.071 269 112 5 115 381 293 538 8.31e-64 216
MsG0280010814.01.T01 MTR_2g103620 42.258 310 105 9 69 359 124 378 1.75e-53 184
MsG0280010814.01.T01 MTR_8g467200 38.035 397 206 8 75 457 32 402 7.75e-52 182
MsG0280010814.01.T01 MTR_2g103640 40.000 290 130 6 67 332 84 353 6.86e-47 166
MsG0280010814.01.T01 MTR_2g091010 35.934 487 220 15 3 461 314 736 9.47e-46 169
MsG0280010814.01.T01 MTR_2g091040 74.286 105 27 0 359 463 422 526 1.28e-45 166
MsG0280010814.01.T01 MTR_2g091040 41.892 222 90 4 33 239 226 423 5.51e-32 128
MsG0280010814.01.T01 MTR_4g046660 43.985 266 137 4 195 457 419 675 4.62e-42 159
MsG0280010814.01.T01 MTR_4g084930 60.204 98 37 2 361 458 37 132 3.26e-29 112
MsG0280010814.01.T01 MTR_8g107320 35.648 216 92 4 131 346 36 204 7.82e-29 113
MsG0280010814.01.T01 MTR_8g106540 31.683 303 151 8 69 369 43 291 4.92e-24 102
MsG0280010814.01.T01 MTR_2g091280 43.668 229 99 8 3 205 321 545 2.62e-23 103
MsG0280010814.01.T01 MTR_2g091280 50.327 153 66 3 32 183 281 424 1.92e-22 100
MsG0280010814.01.T01 MTR_2g091280 42.767 159 84 4 3 156 474 630 8.79e-14 74.3
MsG0280010814.01.T01 MTR_2g091280 47.552 143 72 2 32 173 563 703 2.18e-13 72.8
MsG0280010814.01.T01 MTR_7g056317 67.010 97 31 1 276 372 1 96 9.00e-22 90.5
MsG0280010814.01.T01 MTR_2g090640 49.606 127 61 2 34 157 145 271 2.14e-21 97.4
MsG0280010814.01.T01 MTR_2g090640 41.398 186 65 5 33 187 232 404 1.78e-17 85.5
MsG0280010814.01.T01 MTR_2g090640 42.135 178 73 4 3 152 243 418 3.23e-16 81.3
MsG0280010814.01.T01 MTR_2g091325 43.750 176 88 3 4 170 321 494 2.91e-21 97.1
MsG0280010814.01.T01 MTR_2g091325 39.899 198 93 4 3 187 292 476 6.71e-19 89.7
MsG0280010814.01.T01 MTR_2g091325 44.048 168 82 4 3 169 260 416 1.71e-18 88.6
MsG0280010814.01.T01 MTR_2g091325 40.936 171 80 5 4 153 377 547 3.81e-12 68.9
MsG0280010814.01.T01 MTR_4g084920 40.127 157 58 4 141 294 168 291 2.95e-19 89.0
MsG0280010814.01.T01 MTR_7g056313 49.593 123 59 2 32 153 248 368 4.10e-18 86.3
MsG0280010814.01.T01 MTR_7g056313 43.373 166 82 4 34 191 208 369 3.81e-17 83.2
MsG0280010814.01.T01 MTR_7g056313 40.385 156 63 4 44 169 173 328 8.42e-11 63.9
MsG0280010814.01.T01 MTR_2g091330 41.611 149 74 2 34 169 269 417 7.44e-16 80.5
MsG0280010814.01.T01 MTR_2g091330 41.667 132 55 2 32 163 435 544 8.18e-13 70.9
MsG0280010814.01.T01 MTR_2g091330 40.132 152 82 3 3 153 447 590 3.17e-12 68.9
MsG0280010814.01.T01 MTR_2g091360 44.800 125 56 3 34 157 41 153 7.65e-16 79.0
MsG0280010814.01.T01 MTR_4g095080 30.364 247 144 8 230 450 190 434 9.63e-15 77.0
MsG0280010814.01.T01 MTR_2g091315 39.521 167 79 3 32 178 388 552 7.06e-13 71.2
MsG0280010814.01.T01 MTR_2g091315 42.969 128 68 3 15 137 426 553 1.30e-12 70.1
MsG0280010814.01.T01 MTR_5g094400 23.988 346 218 10 144 457 49 381 2.25e-12 69.7
MsG0280010814.01.T01 MTR_2g091005 42.157 102 37 2 361 462 530 609 6.82e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010814.01.T01 AT5G48385 30.818 159 103 2 307 462 302 456 4.34e-13 71.6
MsG0280010814.01.T01 AT5G16320 24.576 236 172 4 230 463 131 362 4.99e-11 65.1

Find 78 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAATCAGTTTGGCATTC+TGG 0.156163 2:-75373103 None:intergenic
CGATCCATCAAAACTTGTTT+TGG 0.185401 2:+75371902 MsG0280010814.01.T01:CDS
CGTGGAGCTGTTTGGATGCC+TGG 0.284801 2:+75372223 MsG0280010814.01.T01:CDS
GAAGCAGACCCGCAGATTCT+AGG 0.295234 2:-75373341 None:intergenic
AGACAATACTGAAAATTCTT+TGG 0.311409 2:+75372094 MsG0280010814.01.T01:CDS
CTCTCACAAGGTTCAATATC+TGG 0.316877 2:-75372026 None:intergenic
AGATCAAGAAATTGCTAGTC+TGG 0.345057 2:+75373287 MsG0280010814.01.T01:CDS
GTTGTTCCAGCAGATAGATT+TGG 0.356437 2:-75371989 None:intergenic
TTGATTTAAACTTCTTCAAT+TGG 0.365697 2:-75370580 None:intergenic
AAATAAGCTAATGTAAGAAA+TGG 0.371185 2:+75373427 MsG0280010814.01.T01:three_prime_UTR
TTTCGATGAAGATGAAGTTC+TGG 0.371612 2:+75372166 MsG0280010814.01.T01:CDS
CCAACTTATATGCAAAATAA+AGG 0.375327 2:+75371029 MsG0280010814.01.T01:CDS
TTGATTCATGCTTCTTCACT+CGG 0.380428 2:-75370918 None:intergenic
CTTGAGCTAAAAGCACATAA+AGG 0.381897 2:+75373387 MsG0280010814.01.T01:CDS
TGGTGGAATAAGTTTGCAAT+TGG 0.382720 2:+75371809 MsG0280010814.01.T01:CDS
AATAAGCTAATGTAAGAAAT+GGG 0.387128 2:+75373428 MsG0280010814.01.T01:three_prime_UTR
TCTAAAGATAACCAACTTGT+AGG 0.392565 2:+75370557 MsG0280010814.01.T01:CDS
TCCTTAGCTTGTTCTATCAA+TGG 0.393542 2:-75370446 None:intergenic
GACTGTTCTACAATGCATTT+CGG 0.400701 2:+75373311 MsG0280010814.01.T01:CDS
GATCATTCAAGTCGTGCCTT+TGG 0.412926 2:+75371789 MsG0280010814.01.T01:CDS
AAAATTGCCGTGGAGCTGTT+TGG 0.424002 2:+75372215 MsG0280010814.01.T01:CDS
TTTAGATTCCACTCCTTCAC+TGG 0.430384 2:-75370498 None:intergenic
ACTAGCAATTTCTTGATCTC+TGG 0.433462 2:-75373283 None:intergenic
CATAATTCCAGAGGGTCAAA+AGG 0.444501 2:+75371941 MsG0280010814.01.T01:CDS
AACCAACTCCGTTGAAATCA+AGG 0.446102 2:+75373142 MsG0280010814.01.T01:CDS
ACTGCTCTCACAAATCAGTT+TGG 0.447345 2:-75373111 None:intergenic
AACCTTGATTTCAACGGAGT+TGG 0.457408 2:-75373144 None:intergenic
CATTCAAGTCGTGCCTTTGG+TGG 0.464298 2:+75371792 MsG0280010814.01.T01:CDS
TAGACTGTAACTCCTTCCCT+TGG 0.466707 2:-75370538 None:intergenic
CAATACTGAAAATTCTTTGG+CGG 0.473974 2:+75372097 MsG0280010814.01.T01:CDS
GGTGGAATAAGTTTGCAATT+GGG 0.475465 2:+75371810 MsG0280010814.01.T01:CDS
ATAGTAGTGTATAAGTTAGC+AGG 0.478744 2:-75373461 None:intergenic
AGTGAAGGGCATAAAATCAA+TGG 0.500382 2:+75371086 MsG0280010814.01.T01:CDS
TGATTACCAAATCTATCTGC+TGG 0.502562 2:+75371983 MsG0280010814.01.T01:CDS
TCTTCAATTGGCCTACAAGT+TGG 0.502924 2:-75370568 None:intergenic
GATCAAGAAATTGCTAGTCT+GGG 0.505230 2:+75373288 MsG0280010814.01.T01:CDS
GTGGAGCTGTTTGGATGCCT+GGG 0.508191 2:+75372224 MsG0280010814.01.T01:CDS
ATATGCAGTTGCATCTTACA+TGG 0.508808 2:+75371764 MsG0280010814.01.T01:intron
ATCTGCGGGTCTGCTTCATA+AGG 0.510731 2:+75373347 MsG0280010814.01.T01:CDS
AGAATTTGAAATTCTAGTGA+AGG 0.519000 2:+75370948 MsG0280010814.01.T01:CDS
TTGATTTAAAGTCCTCAACT+TGG 0.529306 2:-75371145 None:intergenic
GGAGTTTGAATCAAAAGAGA+AGG 0.529370 2:+75371050 MsG0280010814.01.T01:CDS
TAGATTCAAGCTCCTTCACT+CGG 0.531255 2:-75370876 None:intergenic
TCTAAAGAGGATGACTTTGA+AGG 0.531728 2:+75370895 MsG0280010814.01.T01:CDS
AGCAATTGAAAGGACAGTTA+AGG 0.536768 2:+75370822 MsG0280010814.01.T01:CDS
GGAATTTGAAGAACAAGTGA+AGG 0.538542 2:+75371071 MsG0280010814.01.T01:CDS
GCCATTGATAGAACAAGCTA+AGG 0.541219 2:+75370445 MsG0280010814.01.T01:CDS
AAGAAGCTGTTTGAAAGCCA+AGG 0.543636 2:+75370521 MsG0280010814.01.T01:CDS
GGCGCAAGCAAGAAAACTGA+TGG 0.551669 2:+75371831 MsG0280010814.01.T01:CDS
GAAGGAGCTTGAATCTAAAG+AGG 0.560447 2:+75370882 MsG0280010814.01.T01:CDS
TTTGACCCTCTGGAATTATG+GGG 0.562374 2:-75371938 None:intergenic
CTTGATAGCCAGTGAAGGAG+TGG 0.562641 2:+75370490 MsG0280010814.01.T01:CDS
ATAATTCCAGAGGGTCAAAA+GGG 0.569842 2:+75371942 MsG0280010814.01.T01:CDS
CTTATACACTACTATTGTTG+AGG 0.574242 2:+75373469 MsG0280010814.01.T01:three_prime_UTR
TCAAAACAGAAGCAATTGAA+AGG 0.575242 2:+75370812 MsG0280010814.01.T01:CDS
AGAAGCAATTTGAAGAACGA+TGG 0.578241 2:+75371171 MsG0280010814.01.T01:CDS
GACAACAGCCTAGAATCTGC+GGG 0.580715 2:+75373333 MsG0280010814.01.T01:CDS
GGGCATAAAATCAATGGAGG+AGG 0.583270 2:+75371092 MsG0280010814.01.T01:CDS
CAGAAGAACCTTGATTTCAA+CGG 0.584171 2:-75373150 None:intergenic
AGGAGCTCAAATCAAAATTG+AGG 0.584645 2:+75370423 MsG0280010814.01.T01:CDS
TGCTCTGCACAAAATTGCCG+TGG 0.597313 2:+75372205 MsG0280010814.01.T01:CDS
TTGCAAACTTATTCCACCAA+AGG 0.603660 2:-75371805 None:intergenic
TTGTTAAGCGTCTTATCATG+AGG 0.609658 2:+75372994 MsG0280010814.01.T01:CDS
ATAAGCTAATGTAAGAAATG+GGG 0.612623 2:+75373429 MsG0280010814.01.T01:three_prime_UTR
AGAAGCTGTTTGAAAGCCAA+GGG 0.615446 2:+75370522 MsG0280010814.01.T01:CDS
CAGGCATCCAAACAGCTCCA+CGG 0.619055 2:-75372222 None:intergenic
GCTGTTTGAAAGCCAAGGGA+AGG 0.620349 2:+75370526 MsG0280010814.01.T01:CDS
GGACAACAGCCTAGAATCTG+CGG 0.622530 2:+75373332 MsG0280010814.01.T01:CDS
GCATTGCGAAAGCATGAGGA+AGG 0.624462 2:+75370403 None:intergenic
AGCAACTTGATAGCCAGTGA+AGG 0.626347 2:+75370485 MsG0280010814.01.T01:CDS
GCATTTCGAAAGCCAAGTTG+AGG 0.630511 2:+75371133 MsG0280010814.01.T01:CDS
ATCAAGAAATTGCTAGTCTG+GGG 0.646733 2:+75373289 MsG0280010814.01.T01:CDS
AAACTCTGTTTGCAAAACCC+AGG 0.651184 2:-75372241 None:intergenic
GAATTTGAAGAACAAGTGAA+GGG 0.651910 2:+75371072 MsG0280010814.01.T01:CDS
TGCATATAACTTGACTGACA+AGG 0.669736 2:+75373049 MsG0280010814.01.T01:CDS
GAAGGGCATAAAATCAATGG+AGG 0.690243 2:+75371089 MsG0280010814.01.T01:CDS
CTGAACCCCATAATTCCAGA+GGG 0.696990 2:+75371933 MsG0280010814.01.T01:CDS
ACTGAACCCCATAATTCCAG+AGG 0.700899 2:+75371932 MsG0280010814.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATATATACGTGAT+TGG - Chr2:75372582-75372601 None:intergenic 15.0%
!! ATTTGAAAATGATATAGTAA+AGG + Chr2:75372441-75372460 MsG0280010814.01.T01:intron 15.0%
!!! AATAAATCCTTTTAAGAAAT+CGG + Chr2:75372736-75372755 MsG0280010814.01.T01:intron 15.0%
!!! TATTTTGATATGTATAAATG+TGG - Chr2:75372548-75372567 None:intergenic 15.0%
!! AAATAAGCTAATGTAAGAAA+TGG + Chr2:75373427-75373446 MsG0280010814.01.T01:three_prime_UTR 20.0%
!! AAGGAAAAAATATATTGATG+GGG + Chr2:75371292-75371311 MsG0280010814.01.T01:intron 20.0%
!! AATAAGCTAATGTAAGAAAT+GGG + Chr2:75373428-75373447 MsG0280010814.01.T01:three_prime_UTR 20.0%
!! CAAGGAAAAAATATATTGAT+GGG + Chr2:75371291-75371310 MsG0280010814.01.T01:intron 20.0%
!! TATTAAGAATTAAGTAGATC+AGG - Chr2:75371414-75371433 None:intergenic 20.0%
!! TATTTATAACTAAGATGCAA+GGG - Chr2:75373230-75373249 None:intergenic 20.0%
!! TCAAGGAAAAAATATATTGA+TGG + Chr2:75371290-75371309 MsG0280010814.01.T01:intron 20.0%
!! TTATTTATAACTAAGATGCA+AGG - Chr2:75373231-75373250 None:intergenic 20.0%
!! TTGATTTAAACTTCTTCAAT+TGG - Chr2:75370583-75370602 None:intergenic 20.0%
!!! ACATAAAGGTTTTTAGTTTT+GGG + Chr2:75373401-75373420 MsG0280010814.01.T01:exon 20.0%
!!! ATGTAGTTTTAATTACATTG+AGG + Chr2:75371565-75371584 MsG0280010814.01.T01:intron 20.0%
!!! TGTAGTTTTAATTACATTGA+GGG + Chr2:75371566-75371585 MsG0280010814.01.T01:intron 20.0%
! AAATTGAACTGATACGTAAT+TGG + Chr2:75372826-75372845 MsG0280010814.01.T01:intron 25.0%
! AGACAATACTGAAAATTCTT+TGG + Chr2:75372094-75372113 MsG0280010814.01.T01:CDS 25.0%
! ATAAGCTAATGTAAGAAATG+GGG + Chr2:75373429-75373448 MsG0280010814.01.T01:three_prime_UTR 25.0%
! CCAACTTATATGCAAAATAA+AGG + Chr2:75371029-75371048 MsG0280010814.01.T01:CDS 25.0%
! GCAAAAAAGGAATCATTTAA+CGG + Chr2:75372703-75372722 MsG0280010814.01.T01:intron 25.0%
! TAAAACCAGAGAACAAAAAA+CGG - Chr2:75372511-75372530 None:intergenic 25.0%
! TTAAGAGAAAATTGACATCT+CGG + Chr2:75372882-75372901 MsG0280010814.01.T01:intron 25.0%
! TTAGACTCAATTTCTTCATT+TGG - Chr2:75370666-75370685 None:intergenic 25.0%
! TTTACCCAGTTTATTACTTA+CGG + Chr2:75372378-75372397 MsG0280010814.01.T01:intron 25.0%
!! AGAATTTGAAATTCTAGTGA+AGG + Chr2:75370948-75370967 MsG0280010814.01.T01:CDS 25.0%
!!! ATATATTTTTTCCTTGACAC+AGG - Chr2:75371287-75371306 None:intergenic 25.0%
!!! ATTTCCAAAACAAGTTTTGA+TGG - Chr2:75371909-75371928 None:intergenic 25.0%
!!! CACATAAAGGTTTTTAGTTT+TGG + Chr2:75373400-75373419 MsG0280010814.01.T01:exon 25.0%
!!! CCTTTATTTTGCATATAAGT+TGG - Chr2:75371032-75371051 None:intergenic 25.0%
!!! GTAGTTTTAATTACATTGAG+GGG + Chr2:75371567-75371586 MsG0280010814.01.T01:intron 25.0%
AAGGAATCATTTAACGGTAA+TGG + Chr2:75372709-75372728 MsG0280010814.01.T01:intron 30.0%
AGAAGTTTAAATCAAACCAG+AGG + Chr2:75370588-75370607 MsG0280010814.01.T01:intron 30.0%
AGAGAATAAGTTCAAAGCAA+AGG + Chr2:75371211-75371230 MsG0280010814.01.T01:intron 30.0%
AGGAATCATTTAACGGTAAT+GGG + Chr2:75372710-75372729 MsG0280010814.01.T01:intron 30.0%
ATAGTAGTGTATAAGTTAGC+AGG - Chr2:75373464-75373483 None:intergenic 30.0%
CAATACTGAAAATTCTTTGG+CGG + Chr2:75372097-75372116 MsG0280010814.01.T01:CDS 30.0%
CACAAACTGTCAAACTAATT+TGG + Chr2:75371500-75371519 MsG0280010814.01.T01:intron 30.0%
CTAAAAATAGTTGCACCAAT+AGG - Chr2:75371604-75371623 None:intergenic 30.0%
CTTATACACTACTATTGTTG+AGG + Chr2:75373469-75373488 MsG0280010814.01.T01:three_prime_UTR 30.0%
GAAGAAATTGAGTCTAAAGA+AGG + Chr2:75370669-75370688 MsG0280010814.01.T01:intron 30.0%
GAAGTTTAAATCAAACCAGA+GGG + Chr2:75370589-75370608 MsG0280010814.01.T01:intron 30.0%
GAATTTGAAGAACAAGTGAA+GGG + Chr2:75371072-75371091 MsG0280010814.01.T01:CDS 30.0%
TCAAAACAGAAGCAATTGAA+AGG + Chr2:75370812-75370831 MsG0280010814.01.T01:CDS 30.0%
TCATCATCATCATCATTAAG+AGG - Chr2:75371381-75371400 None:intergenic 30.0%
TCTAAAGATAACCAACTTGT+AGG + Chr2:75370557-75370576 MsG0280010814.01.T01:CDS 30.0%
TTACAAGAAAAGTGGTTTGA+AGG + Chr2:75371248-75371267 MsG0280010814.01.T01:intron 30.0%
! CAAATTAGTTTGACAGTTTG+TGG - Chr2:75371502-75371521 None:intergenic 30.0%
! TTGATTTAAAGTCCTCAACT+TGG - Chr2:75371148-75371167 None:intergenic 30.0%
!! ATGATAAAATGGAGGCATTT+CGG - Chr2:75372676-75372695 None:intergenic 30.0%
!! CAAAACAAGTTTTGATGGAT+CGG - Chr2:75371904-75371923 None:intergenic 30.0%
!! GAAGCATTTTGAAAATCAAG+TGG + Chr2:75370778-75370797 MsG0280010814.01.T01:intron 30.0%
!!! TCTAAAGAGAAGCATTTTGA+TGG + Chr2:75370853-75370872 MsG0280010814.01.T01:CDS 30.0%
ACTAGCAATTTCTTGATCTC+TGG - Chr2:75373286-75373305 None:intergenic 35.0%
AGAAGCAATTTGAAGAACGA+TGG + Chr2:75371171-75371190 MsG0280010814.01.T01:CDS 35.0%
AGATCAAGAAATTGCTAGTC+TGG + Chr2:75373287-75373306 MsG0280010814.01.T01:CDS 35.0%
AGCAATTGAAAGGACAGTTA+AGG + Chr2:75370822-75370841 MsG0280010814.01.T01:CDS 35.0%
AGCTCAACTTACAAGAAAAG+TGG + Chr2:75371240-75371259 MsG0280010814.01.T01:intron 35.0%
AGGAGCTCAAATCAAAATTG+AGG + Chr2:75370423-75370442 MsG0280010814.01.T01:CDS 35.0%
ATAATTCCAGAGGGTCAAAA+GGG + Chr2:75371942-75371961 MsG0280010814.01.T01:CDS 35.0%
ATATGCAGTTGCATCTTACA+TGG + Chr2:75371764-75371783 MsG0280010814.01.T01:intron 35.0%
ATTGATGGGGAAAAAGAATC+AGG + Chr2:75371305-75371324 MsG0280010814.01.T01:intron 35.0%
CAGAAGAACCTTGATTTCAA+CGG - Chr2:75373153-75373172 None:intergenic 35.0%
GACTGTTCTACAATGCATTT+CGG + Chr2:75373311-75373330 MsG0280010814.01.T01:CDS 35.0%
GAGCATAAATCAAAAGAGAG+AGG + Chr2:75370719-75370738 MsG0280010814.01.T01:intron 35.0%
GAGTTGTCCGATTTCTTAAA+AGG - Chr2:75372746-75372765 None:intergenic 35.0%
GGAATTTGAAGAACAAGTGA+AGG + Chr2:75371071-75371090 MsG0280010814.01.T01:CDS 35.0%
GGAGTTTGAATCAAAAGAGA+AGG + Chr2:75371050-75371069 MsG0280010814.01.T01:CDS 35.0%
GGTGGAATAAGTTTGCAATT+GGG + Chr2:75371810-75371829 MsG0280010814.01.T01:CDS 35.0%
GTGCAAAGATACAAAGATCA+AGG + Chr2:75372786-75372805 MsG0280010814.01.T01:intron 35.0%
TAAGTTCAAAGCAAAGGTGA+AGG + Chr2:75371217-75371236 MsG0280010814.01.T01:intron 35.0%
TATCATTGAAGGGGCAAAAA+AGG + Chr2:75372690-75372709 MsG0280010814.01.T01:intron 35.0%
TCTAAAGAGGATGACTTTGA+AGG + Chr2:75370895-75370914 MsG0280010814.01.T01:CDS 35.0%
TGATTACCAAATCTATCTGC+TGG + Chr2:75371983-75372002 MsG0280010814.01.T01:CDS 35.0%
TGCATATAACTTGACTGACA+AGG + Chr2:75373049-75373068 MsG0280010814.01.T01:CDS 35.0%
TGGTGGAATAAGTTTGCAAT+TGG + Chr2:75371809-75371828 MsG0280010814.01.T01:CDS 35.0%
TTGATTCATGCTTCTTCACT+CGG - Chr2:75370921-75370940 None:intergenic 35.0%
TTGATTTATGCTCCTTCACT+CGG - Chr2:75370712-75370731 None:intergenic 35.0%
TTGCAAACTTATTCCACCAA+AGG - Chr2:75371808-75371827 None:intergenic 35.0%
TTGCCCCTTCAATGATAAAA+TGG - Chr2:75372687-75372706 None:intergenic 35.0%
TTGTTAAGCGTCTTATCATG+AGG + Chr2:75372994-75373013 MsG0280010814.01.T01:CDS 35.0%
TTTCGATGAAGATGAAGTTC+TGG + Chr2:75372166-75372185 MsG0280010814.01.T01:CDS 35.0%
! AGTGAAGGGCATAAAATCAA+TGG + Chr2:75371086-75371105 MsG0280010814.01.T01:CDS 35.0%
! ATCAAGAAATTGCTAGTCTG+GGG + Chr2:75373289-75373308 MsG0280010814.01.T01:CDS 35.0%
! CCTCCATTTTATCATTGAAG+GGG + Chr2:75372681-75372700 MsG0280010814.01.T01:intron 35.0%
! CTTGAGCTAAAAGCACATAA+AGG + Chr2:75373387-75373406 MsG0280010814.01.T01:CDS 35.0%
! GATCAAGAAATTGCTAGTCT+GGG + Chr2:75373288-75373307 MsG0280010814.01.T01:CDS 35.0%
! GCCTCCATTTTATCATTGAA+GGG + Chr2:75372680-75372699 MsG0280010814.01.T01:intron 35.0%
! TGCCTCCATTTTATCATTGA+AGG + Chr2:75372679-75372698 MsG0280010814.01.T01:intron 35.0%
!! CGATCCATCAAAACTTGTTT+TGG + Chr2:75371902-75371921 MsG0280010814.01.T01:CDS 35.0%
!! CTTTTGACTCTAACTCAACT+TGG - Chr2:75371005-75371024 None:intergenic 35.0%
!! GCATTTTGAAAATCAAGTGG+AGG + Chr2:75370781-75370800 MsG0280010814.01.T01:intron 35.0%
!! TCCTTAGCTTGTTCTATCAA+TGG - Chr2:75370449-75370468 None:intergenic 35.0%
!!! AATGCTTTTTCTCTCTCACA+AGG - Chr2:75372041-75372060 None:intergenic 35.0%
!!! TTTTGACCCTCTGGAATTAT+GGG - Chr2:75371942-75371961 None:intergenic 35.0%
!!! TTTTGCCGTTTTTTGTTCTC+TGG + Chr2:75372503-75372522 MsG0280010814.01.T01:intron 35.0%
AAACTCTGTTTGCAAAACCC+AGG - Chr2:75372244-75372263 None:intergenic 40.0%
AACCAACTCCGTTGAAATCA+AGG + Chr2:75373142-75373161 MsG0280010814.01.T01:CDS 40.0%
AACCTTGATTTCAACGGAGT+TGG - Chr2:75373147-75373166 None:intergenic 40.0%
AAGAAGCTGTTTGAAAGCCA+AGG + Chr2:75370521-75370540 MsG0280010814.01.T01:CDS 40.0%
ACCCACCGTAAGTAATAAAC+TGG - Chr2:75372386-75372405 None:intergenic 40.0%
ACCCAGTTTATTACTTACGG+TGG + Chr2:75372381-75372400 MsG0280010814.01.T01:intron 40.0%
ACTGCTCTCACAAATCAGTT+TGG - Chr2:75373114-75373133 None:intergenic 40.0%
AGAAGCTGTTTGAAAGCCAA+GGG + Chr2:75370522-75370541 MsG0280010814.01.T01:CDS 40.0%
AGAAGGAAGCAACTTCTTGA+AGG + Chr2:75370686-75370705 MsG0280010814.01.T01:intron 40.0%
ATCCTGAGTGCAAATAGGAA+TGG - Chr2:75372351-75372370 None:intergenic 40.0%
CACAAATCAGTTTGGCATTC+TGG - Chr2:75373106-75373125 None:intergenic 40.0%
CATAATTCCAGAGGGTCAAA+AGG + Chr2:75371941-75371960 MsG0280010814.01.T01:CDS 40.0%
CCCACCGTAAGTAATAAACT+GGG - Chr2:75372385-75372404 None:intergenic 40.0%
CCCAGTTTATTACTTACGGT+GGG + Chr2:75372382-75372401 MsG0280010814.01.T01:intron 40.0%
CCCCTTCAATGATAAAATGG+AGG - Chr2:75372684-75372703 None:intergenic 40.0%
CTCTCACAAGGTTCAATATC+TGG - Chr2:75372029-75372048 None:intergenic 40.0%
GAAGGAGCTTGAATCTAAAG+AGG + Chr2:75370882-75370901 MsG0280010814.01.T01:CDS 40.0%
GAGTGCAAATAGGAATGGTA+GGG - Chr2:75372346-75372365 None:intergenic 40.0%
GCCATTGATAGAACAAGCTA+AGG + Chr2:75370445-75370464 MsG0280010814.01.T01:CDS 40.0%
GGGTATGTGTGAAAATGGAA+TGG - Chr2:75373210-75373229 None:intergenic 40.0%
GTTACTGTGTACTTGAACTC+AGG + Chr2:75373254-75373273 MsG0280010814.01.T01:intron 40.0%
GTTGTTCCAGCAGATAGATT+TGG - Chr2:75371992-75372011 None:intergenic 40.0%
TACCATTCCTATTTGCACTC+AGG + Chr2:75372346-75372365 MsG0280010814.01.T01:intron 40.0%
TAGATTCAAGCTCCTTCACT+CGG - Chr2:75370879-75370898 None:intergenic 40.0%
TAGATTCCAGTTCCTTCAGT+TGG - Chr2:75370754-75370773 None:intergenic 40.0%
TCAAAAGAGAGAGGATTCGA+AGG + Chr2:75370728-75370747 MsG0280010814.01.T01:intron 40.0%
TCAAACCAGAGGGAATTTGA+AGG + Chr2:75370599-75370618 MsG0280010814.01.T01:intron 40.0%
TGAGTGCAAATAGGAATGGT+AGG - Chr2:75372347-75372366 None:intergenic 40.0%
TTTAGATTCCACTCCTTCAC+TGG - Chr2:75370501-75370520 None:intergenic 40.0%
! GAAGGGCATAAAATCAATGG+AGG + Chr2:75371089-75371108 MsG0280010814.01.T01:CDS 40.0%
! GGTTTTGCAAACAGAGTTTC+TGG + Chr2:75372245-75372264 MsG0280010814.01.T01:CDS 40.0%
! TCTTCAATTGGCCTACAAGT+TGG - Chr2:75370571-75370590 None:intergenic 40.0%
! TGCAAGGGTATGTGTGAAAA+TGG - Chr2:75373215-75373234 None:intergenic 40.0%
!! TTTGACCCTCTGGAATTATG+GGG - Chr2:75371941-75371960 None:intergenic 40.0%
!!! CTTTTGACCCTCTGGAATTA+TGG - Chr2:75371943-75371962 None:intergenic 40.0%
!!! GGAGTTGAGTCACTTTTCAA+CGG + Chr2:75371852-75371871 MsG0280010814.01.T01:CDS 40.0%
AAAATTGCCGTGGAGCTGTT+TGG + Chr2:75372215-75372234 MsG0280010814.01.T01:CDS 45.0%
AAGTCAAGGATCCTGTGTCA+AGG + Chr2:75371273-75371292 MsG0280010814.01.T01:intron 45.0%
ACCTCATCCTGAGTGCAAAT+AGG - Chr2:75372356-75372375 None:intergenic 45.0%
ACTGAACCCCATAATTCCAG+AGG + Chr2:75371932-75371951 MsG0280010814.01.T01:CDS 45.0%
CGAAGCAGCTGGAATCTAAA+AGG + Chr2:75370627-75370646 MsG0280010814.01.T01:intron 45.0%
CTGAACCCCATAATTCCAGA+GGG + Chr2:75371933-75371952 MsG0280010814.01.T01:CDS 45.0%
GATCATTCAAGTCGTGCCTT+TGG + Chr2:75371789-75371808 MsG0280010814.01.T01:CDS 45.0%
GCATTTCGAAAGCCAAGTTG+AGG + Chr2:75371133-75371152 MsG0280010814.01.T01:CDS 45.0%
GGGCATAAAATCAATGGAGG+AGG + Chr2:75371092-75371111 MsG0280010814.01.T01:CDS 45.0%
GTGGTTTGAAGGACAAGTCA+AGG + Chr2:75371259-75371278 MsG0280010814.01.T01:intron 45.0%
GTGTACTTGAACTCAGGATC+AGG + Chr2:75373260-75373279 MsG0280010814.01.T01:intron 45.0%
TACTTACGGTGGGTGATGTT+TGG + Chr2:75372392-75372411 MsG0280010814.01.T01:intron 45.0%
TAGACTGTAACTCCTTCCCT+TGG - Chr2:75370541-75370560 None:intergenic 45.0%
TCCTATTTGCACTCAGGATG+AGG + Chr2:75372352-75372371 MsG0280010814.01.T01:intron 45.0%
! AGCAACTTGATAGCCAGTGA+AGG + Chr2:75370485-75370504 MsG0280010814.01.T01:CDS 45.0%
! GCAATTTTGTGCAGAGCAAC+AGG - Chr2:75372203-75372222 None:intergenic 45.0%
! GGGGCACTTAATAGTCCTAT+TGG + Chr2:75371586-75371605 MsG0280010814.01.T01:intron 45.0%
! TTATCTCCCTTTTGACCCTC+TGG - Chr2:75371951-75371970 None:intergenic 45.0%
ACTTCTTGAAGGCCGAGTGA+AGG + Chr2:75370697-75370716 MsG0280010814.01.T01:intron 50.0%
AGGATTCGAAGGCCAACTGA+AGG + Chr2:75370739-75370758 MsG0280010814.01.T01:intron 50.0%
ATCTGCGGGTCTGCTTCATA+AGG + Chr2:75373347-75373366 MsG0280010814.01.T01:CDS 50.0%
CATTCAAGTCGTGCCTTTGG+TGG + Chr2:75371792-75371811 MsG0280010814.01.T01:CDS 50.0%
GACAACAGCCTAGAATCTGC+GGG + Chr2:75373333-75373352 MsG0280010814.01.T01:CDS 50.0%
GCTGTTTGAAAGCCAAGGGA+AGG + Chr2:75370526-75370545 MsG0280010814.01.T01:CDS 50.0%
GGACAACAGCCTAGAATCTG+CGG + Chr2:75373332-75373351 MsG0280010814.01.T01:CDS 50.0%
GGCGCAAGCAAGAAAACTGA+TGG + Chr2:75371831-75371850 MsG0280010814.01.T01:CDS 50.0%
TAGATTCCAGCTGCTTCGCT+TGG - Chr2:75370625-75370644 None:intergenic 50.0%
TGCTCTGCACAAAATTGCCG+TGG + Chr2:75372205-75372224 MsG0280010814.01.T01:CDS 50.0%
! CTTGATAGCCAGTGAAGGAG+TGG + Chr2:75370490-75370509 MsG0280010814.01.T01:CDS 50.0%
! CTTGGCCTTCAAATTCCCTC+TGG - Chr2:75370607-75370626 None:intergenic 50.0%
!! GCATTTTGATGGCCGAGTGA+AGG + Chr2:75370864-75370883 MsG0280010814.01.T01:CDS 50.0%
CAGGCATCCAAACAGCTCCA+CGG - Chr2:75372225-75372244 None:intergenic 55.0%
CGAAGGCCAACTGAAGGAAC+TGG + Chr2:75370745-75370764 MsG0280010814.01.T01:intron 55.0%
GAAGCAGACCCGCAGATTCT+AGG - Chr2:75373344-75373363 None:intergenic 55.0%
GTGGAGCTGTTTGGATGCCT+GGG + Chr2:75372224-75372243 MsG0280010814.01.T01:CDS 55.0%
CGTGGAGCTGTTTGGATGCC+TGG + Chr2:75372223-75372242 MsG0280010814.01.T01:CDS 60.0%
TGAAGGCCAAGCGAAGCAGC+TGG + Chr2:75370616-75370635 MsG0280010814.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 75370416 75373530 75370416 ID=MsG0280010814.01;Name=MsG0280010814.01
Chr2 mRNA 75370416 75373530 75370416 ID=MsG0280010814.01.T01;Parent=MsG0280010814.01;Name=MsG0280010814.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0.5|0.6|1|1|1|5|114|463
Chr2 exon 75370416 75370591 75370416 ID=MsG0280010814.01.T01:exon:11630;Parent=MsG0280010814.01.T01
Chr2 exon 75370798 75371204 75370798 ID=MsG0280010814.01.T01:exon:11631;Parent=MsG0280010814.01.T01
Chr2 exon 75371772 75372266 75371772 ID=MsG0280010814.01.T01:exon:11632;Parent=MsG0280010814.01.T01
Chr2 exon 75372991 75373163 75372991 ID=MsG0280010814.01.T01:exon:11633;Parent=MsG0280010814.01.T01
Chr2 exon 75373276 75373530 75373276 ID=MsG0280010814.01.T01:exon:11634;Parent=MsG0280010814.01.T01
Chr2 CDS 75370416 75370591 75370416 ID=MsG0280010814.01.T01:cds;Parent=MsG0280010814.01.T01
Chr2 CDS 75370798 75371204 75370798 ID=MsG0280010814.01.T01:cds;Parent=MsG0280010814.01.T01
Chr2 CDS 75371772 75372266 75371772 ID=MsG0280010814.01.T01:cds;Parent=MsG0280010814.01.T01
Chr2 CDS 75372991 75373163 75372991 ID=MsG0280010814.01.T01:cds;Parent=MsG0280010814.01.T01
Chr2 CDS 75373276 75373416 75373276 ID=MsG0280010814.01.T01:cds;Parent=MsG0280010814.01.T01
Chr2 three_prime_UTR 75373417 75373530 75373417 ID=MsG0280010814.01.T01:three_prime_utr;Parent=MsG0280010814.01.T01
Gene Sequence

>MsG0280010814.01.T01

ATGAGGAAGGAGCTCAAATCAAAATTGAGGCCATTGATAGAACAAGCTAAGGAATTGACTCTAAAGAGAAGCAACTTGATAGCCAGTGAAGGAGTGGAATCTAAAAAGAAGCTGTTTGAAAGCCAAGGGAAGGAGTTACAGTCTAAAGATAACCAACTTGTAGGCCAATTGAAGAATGGAGGAGTTCAAATCAAAACAGAAGCAATTGAAAGGACAGTTAAGGAACTTGAGTCTAAAGAGAAGCATTTTGATGGCCGAGTGAAGGAGCTTGAATCTAAAGAGGATGACTTTGAAGGCCGAGTGAAGAAGCATGAATCAAAAGAGAGAGAATTTGAAATTCTAGTGAAGGAGCTGCAATCTAAAAAGAAGCAAGTTGAAAACCAAGTTGAGTTAGAGTCAAAAGATAACCAACTTATATGCAAAATAAAGGAGTTTGAATCAAAAGAGAAGGAATTTGAAGAACAAGTGAAGGGCATAAAATCAATGGAGGAGGAACTCGAATCAAAAAGAAGCATTTCGAAAGCCAAGTTGAGGACTTTAAATCAAAAGAGAAGCAATTTGAAGAACGATGGAATAAACTTGATTGCATCTTACATGGATGATCATTCAAGTCGTGCCTTTGGTGGAATAAGTTTGCAATTGGGCGCAAGCAAGAAAACTGATGGAGTTGAGTCACTTTTCAACGGTGTTTTAGTTAATCTGCAAGAATCATCCGATCCATCAAAACTTGTTTTGGAAATGATACTGAACCCCATAATTCCAGAGGGTCAAAAGGGAGATAATGTGATTATTACTGATTACCAAATCTATCTGCTGGAACAACTGCTGAGAATCTCACCAGATATTGAACCTTGTGAGAGAGAAAAAGCATTGAAGCTAGCATATGATTTAAAAGAAAACATGAAAGACAATACTGAAAATTCTTTGGCGGTTCTTGCTTTTCTGCTGCTTTTGTCAATTTATAAATTGCTTGATTCTTTCGATGAAGATGAAGTTCTGGATCTTTTTGCACCTGTTGCTCTGCACAAAATTGCCGTGGAGCTGTTTGGATGCCTGGGTTTTGCAAACAGAGTTTCTGATTTTGTTAAGCGTCTTATCATGAGGAAGCAAATTGTTGAAGCTGTTCAATTCAGTTGTGCATATAACTTGACTGACAAGGATCAATTAGTTGATATGTTGCGAGAACACGTCCAGAATGCCAAACTGATTTGTGAGAGCAGTTGCAAGAAAACCAACTCCGTTGAAATCAAGGATCAGGCCAGAGATCAAGAAATTGCTAGTCTGGGGACTGTTCTACAATGCATTTCGGACAACAGCCTAGAATCTGCGGGTCTGCTTCATAAGGAGATCGACTATCGCATTCTTGAGCTAAAAGCACATAAAGGTTTTTAG

Protein sequence

>MsG0280010814.01.T01

MRKELKSKLRPLIEQAKELTLKRSNLIASEGVESKKKLFESQGKELQSKDNQLVGQLKNGGVQIKTEAIERTVKELESKEKHFDGRVKELESKEDDFEGRVKKHESKEREFEILVKELQSKKKQVENQVELESKDNQLICKIKEFESKEKEFEEQVKGIKSMEEELESKRSISKAKLRTLNQKRSNLKNDGINLIASYMDDHSSRAFGGISLQLGASKKTDGVESLFNGVLVNLQESSDPSKLVLEMILNPIIPEGQKGDNVIITDYQIYLLEQLLRISPDIEPCEREKALKLAYDLKENMKDNTENSLAVLAFLLLLSIYKLLDSFDEDEVLDLFAPVALHKIAVELFGCLGFANRVSDFVKRLIMRKQIVEAVQFSCAYNLTDKDQLVDMLREHVQNAKLICESSCKKTNSVEIKDQARDQEIASLGTVLQCISDNSLESAGLLHKEIDYRILELKAHKGF*