AlfalfaGEDB | MsG0280010722.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010722.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010722.01.T01	XP_013465081.1	97.287	516	14	0	1	516	1	516	0	1039

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010722.01.T01	A0A072VBX4	97.287	516	14	0	1	516	1	516	0.0	1039

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047869.01	MsG0280010722.01	0.834355	3.144531e-56	3.722552e-53
MsG0080047944.01	MsG0280010722.01	0.838142	3.428609e-57	4.550484e-54
MsG0080047957.01	MsG0280010722.01	0.844820	5.966070e-59	9.748655e-56
MsG0080047959.01	MsG0280010722.01	0.838617	2.585713e-57	3.482310e-54
MsG0080048382.01	MsG0280010722.01	0.802603	5.187973e-49	2.551988e-46
MsG0080048404.01	MsG0280010722.01	0.856511	3.061521e-62	7.326014e-59
MsG0080048461.01	MsG0280010722.01	0.830322	3.134295e-55	3.291141e-52
MsG0080048462.01	MsG0280010722.01	0.835681	1.456590e-56	1.794246e-53
MsG0080048463.01	MsG0280010722.01	0.862306	5.563609e-64	1.621736e-60
MsG0080048464.01	MsG0280010722.01	0.852971	3.251900e-61	6.916143e-58

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010722.01.T01	MTR_2g090285	97.287	516	14	0	1	516	1	516	0.0	1039

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010722.01.T01	AT4G28260	42.188	512	263	12	16	503	13	515	3.05e-131	391
MsG0280010722.01.T01	AT4G28260	42.188	512	263	12	16	503	13	515	3.05e-131	391

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Find 142 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACCATCGTCTGACG+TGG	0.599417	2:+73905936	MsG0280010722.01.T01:CDS
AAAATCATGCTCTTGAACCT+CGG	0.590936	2:-73905782	None:intergenic
AAAATTGTGCTCTCTGTCCC+AGG	0.484115	2:+73906829	MsG0280010722.01.T01:CDS
AAACCAACTTTGTTTCAAAC+AGG	0.331707	2:+73906064	MsG0280010722.01.T01:CDS
AAAGAACCGGAAACTGTAAA+TGG	0.357278	2:+73905454	MsG0280010722.01.T01:CDS
AAAGTTAGGAAAATTGGCTT+GGG	0.446570	2:+73905655	MsG0280010722.01.T01:CDS
AAATATAGAGACTGTCTGCG+AGG	0.715588	2:-73907755	None:intergenic
AACCAACTTTGTTTCAAACA+GGG	0.592567	2:+73906065	MsG0280010722.01.T01:CDS
AACGCGCTAGGGTTAGGGTT+AGG	0.344947	2:-73904602	None:intergenic
AAGAAAACGCGCTAGGGTTA+GGG	0.457562	2:-73904607	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGATTGTAACAGGTTC+TGG	+	Chr2:73906722-73906741	MsG0280010722.01.T01:CDS	30.0%
AAAGGGAAATGCTAACTTAA+TGG	-	Chr2:73906552-73906571	None:intergenic	30.0%
AAGCTATTGATGTGAAAGTT+AGG	+	Chr2:73905641-73905660	MsG0280010722.01.T01:CDS	30.0%
AATCAAAATGCTCGTCAAAA+AGG	+	Chr2:73906695-73906714	MsG0280010722.01.T01:CDS	30.0%
ACATTGAGTTACGTGAAAAT+GGG	+	Chr2:73905245-73905264	MsG0280010722.01.T01:CDS	30.0%
AGAAAATGCTGAAACAAATG+GGG	-	Chr2:73906901-73906920	None:intergenic	30.0%
ATCAAAATGCTCGTCAAAAA+GGG	+	Chr2:73906696-73906715	MsG0280010722.01.T01:CDS	30.0%
ATTTGCAGAATTGCTCAATT+GGG	+	Chr2:73907411-73907430	MsG0280010722.01.T01:CDS	30.0%
GAAAAATGAAGAGGGAAAAT+TGG	-	Chr2:73904544-73904563	None:intergenic	30.0%
GAAAGTGAAGAAAAATGAAG+AGG	-	Chr2:73904553-73904572	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	73904475	73907889	73904475	ID=MsG0280010722.01;Name=MsG0280010722.01
Chr2	mRNA	73904475	73907889	73904475	ID=MsG0280010722.01.T01;Parent=MsG0280010722.01;Name=MsG0280010722.01.T01;_AED=0.35;_eAED=0.35;_QI=658\|1\|1\|1\|1\|1\|4\|241\|516
Chr2	exon	73904475	73906239	73904475	ID=MsG0280010722.01.T01:exon:19640;Parent=MsG0280010722.01.T01
Chr2	exon	73906614	73906850	73906614	ID=MsG0280010722.01.T01:exon:19641;Parent=MsG0280010722.01.T01
Chr2	exon	73907350	73907469	73907350	ID=MsG0280010722.01.T01:exon:19642;Parent=MsG0280010722.01.T01
Chr2	exon	73907562	73907889	73907562	ID=MsG0280010722.01.T01:exon:19643;Parent=MsG0280010722.01.T01
Chr2	five_prime_UTR	73904475	73905132	73904475	ID=MsG0280010722.01.T01:five_prime_utr;Parent=MsG0280010722.01.T01
Chr2	CDS	73905133	73906239	73905133	ID=MsG0280010722.01.T01:cds;Parent=MsG0280010722.01.T01
Chr2	CDS	73906614	73906850	73906614	ID=MsG0280010722.01.T01:cds;Parent=MsG0280010722.01.T01
Chr2	CDS	73907350	73907469	73907350	ID=MsG0280010722.01.T01:cds;Parent=MsG0280010722.01.T01
Chr2	CDS	73907562	73907648	73907562	ID=MsG0280010722.01.T01:cds;Parent=MsG0280010722.01.T01
Chr2	three_prime_UTR	73907649	73907889	73907649	ID=MsG0280010722.01.T01:three_prime_utr;Parent=MsG0280010722.01.T01

Gene Sequence

>MsG0280010722.01.T01

ATGGGTGGGAAGTTGGAATTGGGGTCTTGTTCGAATATTGGTGCTTCGAATAATCTGAGAGAGAAAGGTGCGAGGATTATACTGAGACACATTAGAGCTCAAGGGCATCCTTACATTGAGTTACGTGAAAATGGGAAAAAGTTTATATATTTCTGTGTTTTGTGTCTTGCTCGGTGCTATAGTGATAGTGTTGTGTATGATCATTTGAAGGGTAAGCTTCATAGGTCTAGATTAGATTATGCTAGACGTACTTTGATGAAGCCGAATCCGTGGCCTTTTAGTGATGGTCTTATATTCTTTGATAATTCATCTGAGGGTGATAAAGAACCGGAAACTGTAAATGGTAACCGAAATAGATTGTTGAAGCTAATTGAAAGTGGCAACGACAGTTGTCGTGCCATTGTGGCTTTTAATGAAGAGGCTCAGTCAGATGCTCAACCAATTGCGAGGGATGATACACAAGCTGATGGTTCTATGTTGGTAATTCCATGTTTGAAGATTGCAAGTGAAGCTATTGATGTGAAAGTTAGGAAAATTGGCTTGGGGAAGATTTCTGCCAGGTTTGCTGAGAAGGATGGCTCTTTAGGGAATGAAATTAGAAGAATTTGGTGTGAATGGTTAGGAAAAGAGAATAGTCAACAAGATGACGCCGAGGTTCAAGAGCATGATTTTGCGGTTGTAGTTTTCCCATATAGTTATGATTTGGGTCGGGACAAAGTGCTTGAGGTTGAGGATGCTAAGTCATTACTCCCATCCTCCTCTATGCTAGAACTGGAAGATGAGAGGGAAAGTGGTAGAAAGAGAAAAGAACCATCGTCTGACGTGGAAGATGTTGATGAAATCCGCAGGCAGTATGCTTCAGAAGAGTCTCCACCTTTGAGGAATGGCCCCTCAACATTGACGCTTGATCAATCCAACAGTCAGCTTCTTCAAACCAACTTTGTTTCAAACAGGGCTATCAGGAAGGCAATCAGACGGCGAGAGCGCTTAGCAGCAGAGAAAGTATGCAACATCTGTCAACAAAACATGATTCCTGGTAAAGATGTAGCAGCATTTCTGAATTTGAAGACTGGAAGAGTAGTTTGCTGCAGTCGGAATCCAACTGGGGCTTTTCATGTGTTTCATACGGCCTGTGTCATACACTGGATACTCTTGTGCGAATATGAAATGATCACAGATCGTTTAGTTAATCAAAATGCTCGTCAAAAAGGGAAGAAAAAGATTGTAACAGGTTCTGGTAAAGAAGACAGGGATATAAAACATGTTTTCTGTCCAGAGTGTCAAGGTGCTGGTCTGATCATTGCAGATGGGTTGGAGCAACCAAAATTGTGCTCTCTGTCCCAGATGTTCCGACTGAAATTAAAGATCATTCTACAACGCAAAGAATGGATCAAGAGTTCTGAAGATTTGCAGAATTGCTCAATTGGGTTTCATTTCCCTTCGGAATCTGAAGAGATAGCTGAGGAAAATGTGGAGCCAATAAAAATGTTGCAGTTCTATCGTGCTGATGACGAGCATGTGGTTAGTAAGAATTGTGCGAATGTTGCATAG

Protein sequence

>MsG0280010722.01.T01

MGGKLELGSCSNIGASNNLREKGARIILRHIRAQGHPYIELRENGKKFIYFCVLCLARCYSDSVVYDHLKGKLHRSRLDYARRTLMKPNPWPFSDGLIFFDNSSEGDKEPETVNGNRNRLLKLIESGNDSCRAIVAFNEEAQSDAQPIARDDTQADGSMLVIPCLKIASEAIDVKVRKIGLGKISARFAEKDGSLGNEIRRIWCEWLGKENSQQDDAEVQEHDFAVVVFPYSYDLGRDKVLEVEDAKSLLPSSSMLELEDERESGRKRKEPSSDVEDVDEIRRQYASEESPPLRNGPSTLTLDQSNSQLLQTNFVSNRAIRKAIRRRERLAAEKVCNICQQNMIPGKDVAAFLNLKTGRVVCCSRNPTGAFHVFHTACVIHWILLCEYEMITDRLVNQNARQKGKKKIVTGSGKEDRDIKHVFCPECQGAGLIIADGLEQPKLCSLSQMFRLKLKIILQRKEWIKSSEDLQNCSIGFHFPSESEEIAEENVEPIKMLQFYRADDEHVVSKNCANVA*