AlfalfaGEDB | MsG0280010813.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010813.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010813.01.T01	RHN75818.1	87.097	62	8	0	1	62	349	410	1.90E-22	100

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010813.01.T01	A0A396JHJ4	87.097	62	8	0	1	62	349	410	9.05e-23	100

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048787.01	MsG0280010813.01	0.845282	4.476054e-59	7.422141e-56
MsG0180000065.01	MsG0280010813.01	0.805726	1.161489e-49	6.190945e-47
MsG0180000091.01	MsG0280010813.01	0.836693	8.058977e-57	1.023416e-53
MsG0180000470.01	MsG0280010813.01	0.836042	1.179798e-56	1.469180e-53
MsG0180000526.01	MsG0280010813.01	0.811890	5.581916e-51	3.496680e-48
MsG0180000651.01	MsG0280010813.01	0.806704	7.229374e-50	3.950599e-47
MsG0180000680.01	MsG0280010813.01	0.808316	3.287789e-50	1.873945e-47
MsG0180000702.01	MsG0280010813.01	0.842324	2.771377e-58	4.187216e-55
MsG0180000703.01	MsG0280010813.01	0.818017	2.441200e-52	1.806228e-49
MsG0180001063.01	MsG0280010813.01	0.804645	1.956035e-49	1.013927e-46
MsG0180001662.01	MsG0280010813.01	0.822608	2.162734e-53	1.819240e-50
MsG0180002071.01	MsG0280010813.01	0.824367	8.389684e-54	7.415860e-51
MsG0180003673.01	MsG0280010813.01	0.808707	2.713233e-50	1.562224e-47
MsG0180003686.01	MsG0280010813.01	0.809020	2.325726e-50	1.350289e-47
MsG0180004465.01	MsG0280010813.01	0.826016	3.419211e-54	3.168369e-51
MsG0180004765.01	MsG0280010813.01	0.850430	1.706646e-60	3.342363e-57
MsG0180004926.01	MsG0280010813.01	0.809542	1.797521e-50	1.058303e-47
MsG0180005050.01	MsG0280010813.01	0.800713	1.266672e-48	5.938976e-46
MsG0180005185.01	MsG0280010813.01	0.803690	3.090510e-49	1.563159e-46
MsG0180005445.01	MsG0280010813.01	0.812819	3.498745e-51	2.246802e-48
MsG0180005730.01	MsG0280010813.01	0.808184	3.508187e-50	1.992634e-47
MsG0180005732.01	MsG0280010813.01	0.801601	8.335669e-49	3.997030e-46
MsG0280010551.01	MsG0280010813.01	0.801963	7.025043e-49	3.399693e-46
MsG0280010599.01	MsG0280010813.01	0.816725	4.769463e-52	3.406142e-49
MsG0280010712.01	MsG0280010813.01	0.804152	2.477604e-49	1.268128e-46
MsG0280010722.01	MsG0280010813.01	0.825509	4.510355e-54	4.119284e-51
MsG0280010813.01	MsG0280010814.01	0.808841	2.540493e-50	1.467912e-47
MsG0280010813.01	MsG0280011032.01	0.800645	1.308029e-48	6.122581e-46
MsG0280010813.01	MsG0280011163.01	0.838842	2.261265e-57	3.066237e-54
MsG0280010813.01	MsG0280011201.01	0.831511	1.601220e-55	1.741443e-52
MsG0280010813.01	MsG0280011217.01	0.802884	4.539366e-49	2.249009e-46
MsG0280010813.01	MsG0380012034.01	0.827053	1.934687e-54	1.846807e-51
MsG0280010813.01	MsG0380012067.01	0.833461	5.264248e-56	6.066326e-53
MsG0280010813.01	MsG0380012085.01	0.809790	1.589985e-50	9.423183e-48
MsG0280010813.01	MsG0380012091.01	0.807594	4.683305e-50	2.618978e-47
MsG0280010813.01	MsG0380012362.01	0.805806	1.117324e-49	5.967547e-47
MsG0280010813.01	MsG0380012365.01	0.828101	1.083840e-54	1.066799e-51
MsG0280010813.01	MsG0380012371.01	0.820700	5.970690e-53	4.758651e-50
MsG0280010813.01	MsG0380012460.01	0.816981	4.177786e-52	3.004884e-49
MsG0280010813.01	MsG0380013176.01	0.800514	1.390536e-48	6.487231e-46
MsG0280010813.01	MsG0380013363.01	0.805423	1.344853e-49	7.112086e-47
MsG0280010813.01	MsG0380014251.01	0.802479	5.501674e-49	2.697773e-46
MsG0280010813.01	MsG0380014468.01	0.807549	4.787197e-50	2.674058e-47
MsG0280010813.01	MsG0380014537.01	0.810040	1.404857e-50	8.380597e-48
MsG0280010813.01	MsG0380014701.01	0.803674	3.113997e-49	1.574323e-46
MsG0280010813.01	MsG0380014948.01	0.806714	7.194985e-50	3.932834e-47
MsG0280010813.01	MsG0380014949.01	0.820574	6.382162e-53	5.068845e-50
MsG0280010813.01	MsG0380015039.01	0.816412	5.603341e-52	3.967559e-49
MsG0280010813.01	MsG0380015332.01	0.822652	2.112853e-53	1.779316e-50
MsG0280010813.01	MsG0380015374.01	0.801771	7.694985e-49	3.705784e-46
MsG0280010813.01	MsG0380015436.01	0.801168	1.022547e-48	4.850228e-46
MsG0280010813.01	MsG0380015893.01	0.807500	4.902845e-50	2.735306e-47
MsG0280010813.01	MsG0380015980.01	0.815164	1.063389e-51	7.276300e-49
MsG0280010813.01	MsG0380016387.01	0.817699	2.879469e-52	2.112042e-49
MsG0280010813.01	MsG0380016407.01	0.840257	9.694829e-58	1.373254e-54
MsG0280010813.01	MsG0380016517.01	0.825848	3.747578e-54	3.456322e-51
MsG0280010813.01	MsG0380016737.01	0.816309	5.910052e-52	4.173288e-49
MsG0280010813.01	MsG0380017244.01	0.800421	1.452600e-48	6.761094e-46
MsG0280010813.01	MsG0380017461.01	0.800988	1.112967e-48	5.255594e-46
MsG0280010813.01	MsG0380017584.01	0.807364	5.240938e-50	2.913445e-47
MsG0280010813.01	MsG0380017589.01	0.809346	1.980223e-50	1.159837e-47
MsG0280010813.01	MsG0480018251.01	0.816135	6.464264e-52	4.542723e-49
MsG0280010813.01	MsG0480018778.01	0.800527	1.382374e-48	6.451113e-46
MsG0280010813.01	MsG0480018883.01	0.811046	8.515933e-51	5.217337e-48
MsG0280010813.01	MsG0480019035.01	0.812387	4.349712e-51	2.761895e-48
MsG0280010813.01	MsG0480019297.01	0.800937	1.140175e-48	5.376785e-46
MsG0280010813.01	MsG0480019453.01	0.835671	1.465212e-56	1.804268e-53
MsG0280010813.01	MsG0480019970.01	0.816886	4.388224e-52	3.147773e-49
MsG0280010813.01	MsG0480020499.01	0.823800	1.139518e-53	9.913298e-51
MsG0280010813.01	MsG0480020505.01	0.810327	1.217752e-50	7.318919e-48
MsG0280010813.01	MsG0480020540.01	0.810569	1.080130e-50	6.533447e-48
MsG0280010813.01	MsG0480020739.01	0.812272	4.608487e-51	2.917230e-48
MsG0280010813.01	MsG0480020887.01	0.818379	2.021113e-52	1.510572e-49
MsG0280010813.01	MsG0480021195.01	0.810428	1.158563e-50	6.981529e-48
MsG0280010813.01	MsG0480021501.01	0.803926	2.760795e-49	1.404983e-46
MsG0280010813.01	MsG0480021796.01	0.811532	6.678112e-51	4.144197e-48
MsG0280010813.01	MsG0480021918.01	0.838331	3.064457e-57	4.090804e-54
MsG0280010813.01	MsG0480022259.01	0.801994	6.924944e-49	3.353921e-46
MsG0280010813.01	MsG0480022261.01	0.800486	1.409179e-48	6.569515e-46
MsG0280010813.01	MsG0480022262.01	0.801294	9.637044e-49	4.585679e-46
MsG0280010813.01	MsG0480022985.01	0.812523	4.062942e-51	2.589162e-48
MsG0280010813.01	MsG0480022986.01	0.806137	9.520545e-50	5.127982e-47
MsG0280010813.01	MsG0480023145.01	0.807773	4.290773e-50	2.410804e-47
MsG0280010813.01	MsG0480023172.01	0.802473	5.517995e-49	2.705389e-46
MsG0280010813.01	MsG0480023251.01	0.808683	2.745144e-50	1.579623e-47
MsG0280010813.01	MsG0480023354.01	0.806574	7.701524e-50	4.194630e-47
MsG0280010813.01	MsG0480023488.01	0.834309	3.228384e-56	3.816628e-53
MsG0280010813.01	MsG0480023873.01	0.816036	6.801992e-52	4.767236e-49
MsG0280010813.01	MsG0580024038.01	0.818869	1.564836e-52	1.185408e-49
MsG0280010813.01	MsG0580024304.01	0.825588	4.319890e-54	3.954311e-51
MsG0280010813.01	MsG0580024781.01	0.824326	8.577663e-54	7.572990e-51
MsG0280010813.01	MsG0580025332.01	0.800741	1.249883e-48	5.864740e-46
MsG0280010813.01	MsG0580025723.01	0.849418	3.275973e-60	6.205876e-57
MsG0280010813.01	MsG0580025987.01	0.819510	1.118328e-52	8.623419e-50
MsG0280010813.01	MsG0580027745.01	0.819400	1.184559e-52	9.105811e-50
MsG0280010813.01	MsG0580027947.01	0.802139	6.464538e-49	3.142581e-46
MsG0280010813.01	MsG0580029008.01	0.807116	5.913227e-50	3.266052e-47
MsG0280010813.01	MsG0580029704.01	0.808778	2.620499e-50	1.511619e-47
MsG0280010813.01	MsG0580029925.01	0.804575	2.022209e-49	1.046361e-46
MsG0280010813.01	MsG0580029926.01	0.807616	4.633406e-50	2.592614e-47
MsG0280010813.01	MsG0580030142.01	0.800151	1.649048e-48	7.622477e-46
MsG0280010813.01	MsG0680030364.01	0.805371	1.378801e-49	7.281986e-47
MsG0280010813.01	MsG0680030674.01	0.824260	8.890444e-54	7.834232e-51
MsG0280010813.01	MsG0680030677.01	0.801645	8.167093e-49	3.920618e-46
MsG0280010813.01	MsG0680030880.01	0.821912	3.137556e-53	2.587022e-50
MsG0280010813.01	MsG0680030881.01	0.804289	2.320166e-49	1.191702e-46
MsG0280010813.01	MsG0680031561.01	0.802514	5.411845e-49	2.656033e-46
MsG0280010813.01	MsG0680032058.01	0.809429	1.900327e-50	1.115499e-47
MsG0280010813.01	MsG0680032801.01	0.820315	7.317805e-53	5.770512e-50
MsG0280010813.01	MsG0680032933.01	0.803506	3.375346e-49	1.699193e-46
MsG0280010813.01	MsG0680033302.01	0.813125	2.998796e-51	1.941588e-48
MsG0280010813.01	MsG0680034739.01	0.845917	3.010193e-59	5.095012e-56
MsG0280010813.01	MsG0680034891.01	0.802699	4.955107e-49	2.443529e-46
MsG0280010813.01	MsG0680035005.01	0.826599	2.483537e-54	2.339590e-51
MsG0280010813.01	MsG0680035034.01	0.810735	9.941137e-51	6.040286e-48
MsG0280010813.01	MsG0680035040.01	0.809456	1.875407e-50	1.101628e-47
MsG0280010813.01	MsG0680035123.01	0.815897	7.305008e-52	5.099900e-49
MsG0280010813.01	MsG0680035216.01	0.801530	8.619408e-49	4.125932e-46
MsG0280010813.01	MsG0680035580.01	0.831573	1.546468e-55	1.685045e-52
MsG0280010813.01	MsG0780036018.01	0.800728	1.258058e-48	5.900985e-46
MsG0280010813.01	MsG0780036602.01	0.822748	2.006503e-53	1.694460e-50
MsG0280010813.01	MsG0780036789.01	0.800802	1.214693e-48	5.708288e-46
MsG0280010813.01	MsG0780037144.01	0.807726	4.390478e-50	2.463846e-47
MsG0280010813.01	MsG0780037146.01	0.815157	1.067705e-51	7.304368e-49
MsG0280010813.01	MsG0780037630.01	0.801252	9.830855e-49	4.672911e-46
MsG0280010813.01	MsG0780038401.01	0.830916	2.242304e-55	2.396093e-52
MsG0280010813.01	MsG0780038439.01	0.821719	3.477782e-53	2.851826e-50
MsG0280010813.01	MsG0780038691.01	0.810148	1.331541e-50	7.965231e-48
MsG0280010813.01	MsG0780038828.01	0.821245	4.474409e-53	3.620573e-50
MsG0280010813.01	MsG0780038907.01	0.802148	6.436334e-49	3.129676e-46
MsG0280010813.01	MsG0780039170.01	0.802361	5.819718e-49	2.845317e-46
MsG0280010813.01	MsG0780039171.01	0.816394	5.657922e-52	4.004263e-49
MsG0280010813.01	MsG0780039178.01	0.801874	7.327522e-49	3.538395e-46
MsG0280010813.01	MsG0780039443.01	0.848735	5.070479e-60	9.395762e-57
MsG0280010813.01	MsG0780039717.01	0.800456	1.429398e-48	6.658550e-46
MsG0280010813.01	MsG0780040044.01	0.805636	1.213008e-49	6.450297e-47
MsG0280010813.01	MsG0780040074.01	0.812684	3.746194e-51	2.397412e-48
MsG0280010813.01	MsG0780040669.01	0.814919	1.205578e-51	8.194513e-49
MsG0280010813.01	MsG0780040788.01	0.808494	3.013702e-50	1.725680e-47
MsG0280010813.01	MsG0780041033.01	0.820834	5.563940e-53	4.451316e-50
MsG0280010813.01	MsG0780041229.01	0.835808	1.352595e-56	1.672377e-53
MsG0280010813.01	MsG0780041305.01	0.800728	1.258058e-48	5.900985e-46
MsG0280010813.01	MsG0780041475.01	0.839737	1.325094e-57	1.846697e-54
MsG0280010813.01	MsG0880041854.01	0.800886	1.167636e-48	5.499319e-46
MsG0280010813.01	MsG0880042161.01	0.805432	1.339030e-49	7.083009e-47
MsG0280010813.01	MsG0880042434.01	0.832126	1.129068e-55	1.250324e-52
MsG0280010813.01	MsG0880042520.01	0.826190	3.108049e-54	2.894300e-51
MsG0280010813.01	MsG0880042656.01	0.847650	1.011381e-59	1.809961e-56
MsG0280010813.01	MsG0880042698.01	0.803352	3.631999e-49	1.821043e-46
MsG0280010813.01	MsG0880043479.01	0.812276	4.598244e-51	2.911114e-48
MsG0280010813.01	MsG0880043480.01	0.850310	1.844446e-60	3.597933e-57
MsG0280010813.01	MsG0880043924.01	0.810936	8.996405e-51	5.495931e-48
MsG0280010813.01	MsG0880043941.01	0.823398	1.415413e-53	1.217203e-50
MsG0280010813.01	MsG0880044573.01	0.848528	5.787881e-60	1.065306e-56
MsG0280010813.01	MsG0880044728.01	0.811800	5.839110e-51	3.649138e-48
MsG0280010813.01	MsG0880045111.01	0.817245	3.644148e-52	2.639826e-49
MsG0280010813.01	MsG0880045639.01	0.804492	2.105343e-49	1.086988e-46
MsG0280010813.01	MsG0880045765.01	0.831826	1.339204e-55	1.470288e-52
MsG0280010813.01	MsG0880046967.01	0.802866	4.578115e-49	2.267184e-46
MsG0280010813.01	MsG0880047745.01	0.805920	1.057391e-49	5.663957e-47
MsG0280006567.01	MsG0280010813.01	0.800264	1.563626e-48	7.248755e-46
MsG0280006601.01	MsG0280010813.01	0.820067	8.343036e-53	6.534474e-50
MsG0280007066.01	MsG0280010813.01	0.801777	7.671670e-49	3.695195e-46
MsG0280007072.01	MsG0280010813.01	0.810645	1.039745e-50	6.302189e-48
MsG0280007496.01	MsG0280010813.01	0.806378	8.468183e-50	4.589230e-47
MsG0280007529.01	MsG0280010813.01	0.802785	4.756866e-49	2.350944e-46
MsG0280007547.01	MsG0280010813.01	0.840977	6.283202e-58	9.100657e-55
MsG0280007955.01	MsG0280010813.01	0.800889	1.166313e-48	5.493386e-46
MsG0280008257.01	MsG0280010813.01	0.840623	7.778181e-58	1.114306e-54
MsG0280008765.01	MsG0280010813.01	0.818121	2.312923e-52	1.716211e-49
MsG0280009748.01	MsG0280010813.01	0.827419	1.580906e-54	1.525478e-51
MsG0280010109.01	MsG0280010813.01	0.822091	2.852126e-53	2.363566e-50
MsG0280010287.01	MsG0280010813.01	0.804276	2.334346e-49	1.198590e-46
MsG0280010349.01	MsG0280010813.01	0.800346	1.504725e-48	6.990290e-46
MsG0280010350.01	MsG0280010813.01	0.811023	8.614528e-51	5.274765e-48
MsG0280010517.01	MsG0280010813.01	0.807413	5.117309e-50	2.848474e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010813.01.T01	MTR_2g091110	87.097	62	8	1	62	349	410	2.37e-26	100
MsG0280010813.01.T01	MTR_5g078500	63.934	61	22	6	66	242	302	1.29e-15	68.9
MsG0280010813.01.T01	MTR_2g091250	68.966	58	18	6	63	255	312	1.98e-15	68.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Find 9 sgRNAs with CRISPR-Local

Find 10 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGAGAAGCACTTTGAAGAAT+GGG	0.450476	2:+75368912	MsG0280010813.01.T01:CDS
GCAGAGTGAAGGACGAGCGC+AGG	0.460622	2:+75368876	MsG0280010813.01.T01:CDS
TGAAGAATGGGCAAAGAAGC+TGG	0.468676	2:+75368924	MsG0280010813.01.T01:CDS
AGGAGAAGCACTTTGAAGAA+TGG	0.469828	2:+75368911	MsG0280010813.01.T01:CDS
TTAATTCAAATTCAATCAAA+CGG	0.471300	2:-75368972	None:intergenic
AGCGCAGGAGCTTCAGTCGA+AGG	0.511888	2:+75368891	MsG0280010813.01.T01:CDS
TGAATTTGAATTAAACGAGA+AGG	0.532623	2:+75368981	MsG0280010813.01.T01:CDS
TTAAACGAGAAGGAACTTGA+AGG	0.586614	2:+75368991	MsG0280010813.01.T01:CDS
TTAAAAGAGAAGCAGAGTGA+AGG	0.624724	2:+75368865	MsG0280010813.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	TTAATTCAAATTCAATCAAA+CGG	-	Chr2:75368975-75368994	None:intergenic	15.0%
!	TGAATTTGAATTAAACGAGA+AGG	+	Chr2:75368981-75369000	MsG0280010813.01.T01:CDS	25.0%
!	TAAAAAGAGAAGCAAGTTGA+AGG	+	Chr2:75369032-75369051	MsG0280010813.01.T01:CDS	30.0%
	TTAAAAGAGAAGCAGAGTGA+AGG	+	Chr2:75368865-75368884	MsG0280010813.01.T01:CDS	35.0%
	TTAAACGAGAAGGAACTTGA+AGG	+	Chr2:75368991-75369010	MsG0280010813.01.T01:CDS	35.0%
!!	AGGAGAAGCACTTTGAAGAA+TGG	+	Chr2:75368911-75368930	MsG0280010813.01.T01:CDS	40.0%
!!	GGAGAAGCACTTTGAAGAAT+GGG	+	Chr2:75368912-75368931	MsG0280010813.01.T01:CDS	40.0%
	TGAAGAATGGGCAAAGAAGC+TGG	+	Chr2:75368924-75368943	MsG0280010813.01.T01:CDS	45.0%
	AGCGCAGGAGCTTCAGTCGA+AGG	+	Chr2:75368891-75368910	MsG0280010813.01.T01:CDS	60.0%
	GCAGAGTGAAGGACGAGCGC+AGG	+	Chr2:75368876-75368895	MsG0280010813.01.T01:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	75368853	75369065	75368853	ID=MsG0280010813.01;Name=MsG0280010813.01
Chr2	mRNA	75368853	75369065	75368853	ID=MsG0280010813.01.T01;Parent=MsG0280010813.01;Name=MsG0280010813.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|70
Chr2	exon	75368853	75369065	75368853	ID=MsG0280010813.01.T01:exon:11629;Parent=MsG0280010813.01.T01
Chr2	CDS	75368853	75369065	75368853	ID=MsG0280010813.01.T01:cds;Parent=MsG0280010813.01.T01

Gene Sequence	>MsG0280010813.01.T01 ATGAAGCTAGTGTTAAAAGAGAAGCAGAGTGAAGGACGAGCGCAGGAGCTTCAGTCGAAGGAGAAGCACTTTGAAGAATGGGCAAAGAAGCTGGAGTCAAGAGAGAAGCAGCTTGATGTCCGTTTGATTGAATTTGAATTAAACGAGAAGGAACTTGAAGGTCGTATGAATGAGCGTGATAAAAAGAGAAGCAAGTTGAAGGACGAGCAATAG
Protein sequence	>MsG0280010813.01.T01 MKLVLKEKQSEGRAQELQSKEKHFEEWAKKLESREKQLDVRLIEFELNEKELEGRMNERDKKRSKLKDEQ*