AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011536.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011536.01.T01 MTR_3g006320 90.577 520 38 1 1 520 1 509 0.0 962
MsG0380011536.01.T01 MTR_1g069420 57.807 538 188 10 1 520 1 517 0.0 568
MsG0380011536.01.T01 MTR_4g030960 57.404 547 185 12 1 520 1 526 0.0 558
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011536.01.T01 AT1G71360 46.958 526 226 10 15 510 16 518 1.17e-142 424
MsG0380011536.01.T01 AT1G71360 46.958 526 226 10 15 510 42 544 7.65e-142 422
MsG0380011536.01.T01 AT1G22882 53.825 366 141 4 161 502 213 574 2.49e-128 389
MsG0380011536.01.T01 AT4G23950 45.399 326 159 5 202 520 170 483 1.36e-86 278
MsG0380011536.01.T01 AT4G23950 45.260 327 159 6 202 520 170 484 4.53e-85 274

Find 79 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATATTTGTCTTTGTTTC+TGG 0.123881 3:+1094527 None:intergenic
TATTTATATGTAGATGTTTC+TGG 0.164077 3:-1095056 MsG0380011536.01.T01:intron
ACTAGTACTCCAATTGATTT+TGG 0.171618 3:+1094674 None:intergenic
TGACTTGAATTTATCGGTTT+TGG 0.187353 3:-1093923 MsG0380011536.01.T01:CDS
TTATAAAGTTTCTTTGTCTT+TGG 0.237986 3:-1096451 MsG0380011536.01.T01:CDS
GACAAAACCAATGATCTTAT+TGG 0.260394 3:-1094900 MsG0380011536.01.T01:CDS
ACCGACGATTGGATCTTTCT+TGG 0.277128 3:-1094360 MsG0380011536.01.T01:CDS
CAAATATTCCTCATCAGATT+TGG 0.295282 3:+1094974 None:intergenic
GGCTCAAAGATTTGTTCTTC+AGG 0.304534 3:-1094310 MsG0380011536.01.T01:CDS
TTATCTTGACTTGAATTTAT+CGG 0.318188 3:-1093929 MsG0380011536.01.T01:CDS
TTGAGCATGGTTGAAGTTTA+CGG 0.319953 3:-1094219 MsG0380011536.01.T01:CDS
CGAGTTACCAATAAGATCAT+TGG 0.346327 3:+1094893 None:intergenic
TTTAGATATCGAACCCATTT+CGG 0.354077 3:+1094285 None:intergenic
CTTATTGGTAACTCGCTTAT+CGG 0.359280 3:-1094885 MsG0380011536.01.T01:CDS
TACTCTATGTATTACACTTC+CGG 0.360472 3:+1094647 None:intergenic
CTGATATATGCTGAAGAAAA+TGG 0.362230 3:-1094165 MsG0380011536.01.T01:CDS
ATGTTAGTGATCTTGATTCT+TGG 0.364251 3:-1093640 MsG0380011536.01.T01:CDS
TCATGTTCCTTTCTATTATG+TGG 0.379171 3:+1094813 None:intergenic
CAACAAGTTGGCAGGATGCC+GGG 0.384773 3:-1093988 MsG0380011536.01.T01:CDS
ATAAGTTGTGGCAATGGATA+TGG 0.386092 3:-1096387 MsG0380011536.01.T01:CDS
AGATGTTTCTGGAGAAGTTC+CGG 0.391702 3:-1095045 MsG0380011536.01.T01:CDS
ATGAGGAATATTTGACTAAA+GGG 0.392267 3:-1094965 MsG0380011536.01.T01:CDS
AAAGAGTATAGCAAAGATAT+AGG 0.394814 3:-1093856 MsG0380011536.01.T01:CDS
TCTTCGGAATCCGTGTTCTT+CGG 0.404866 3:-1094508 MsG0380011536.01.T01:CDS
TTGTCTGCAGCCGTGCCGCT+CGG 0.408230 3:-1094729 MsG0380011536.01.T01:CDS
AATGGTAAATAGAAATGTTC+CGG 0.409342 3:-1094031 MsG0380011536.01.T01:CDS
GTGAATCTTCAAAGTCACTA+TGG 0.412172 3:-1094261 MsG0380011536.01.T01:CDS
TTGAGCCTGCTTCACATTTG+AGG 0.413911 3:+1094326 None:intergenic
AGAACAGTGATGATGATGTT+TGG 0.430324 3:-1094098 MsG0380011536.01.T01:CDS
GCAACAAGTTGGCAGGATGC+CGG 0.433804 3:-1093989 MsG0380011536.01.T01:CDS
TGTTCTTCAGGAACCGAAAT+GGG 0.436891 3:-1094298 MsG0380011536.01.T01:CDS
TTCTTCTGAGAACGTTGAAA+TGG 0.441280 3:-1094049 MsG0380011536.01.T01:CDS
TTGTTCTTCAGGAACCGAAA+TGG 0.444428 3:-1094299 MsG0380011536.01.T01:CDS
TTCCAGTTTGATACCACAAC+CGG 0.447076 3:+1095026 None:intergenic
TTCCGGTTGTGGTATCAAAC+TGG 0.451433 3:-1095028 MsG0380011536.01.T01:CDS
CAGTTAGTTCCAAAATCAAT+TGG 0.451584 3:-1094683 MsG0380011536.01.T01:CDS
TGCAATTGGATCATATACTT+AGG 0.461963 3:-1093601 MsG0380011536.01.T01:CDS
TACTGCCTCAAATGTGAAGC+AGG 0.465363 3:-1094331 MsG0380011536.01.T01:CDS
GATGAGGAATATTTGACTAA+AGG 0.473117 3:-1094966 MsG0380011536.01.T01:CDS
AACTTATCCATAAGCTGAAA+AGG 0.474461 3:+1096403 None:intergenic
TTCTGGAGAAGTTCCGGTTG+TGG 0.476275 3:-1095039 MsG0380011536.01.T01:CDS
TGGTTTATCCGACCGACGAT+TGG 0.481196 3:-1094371 MsG0380011536.01.T01:CDS
CGTGCTTCATCGATCGGATC+CGG 0.483570 3:+1094012 None:intergenic
GCAATTGGATCATATACTTA+GGG 0.488218 3:-1093600 MsG0380011536.01.T01:CDS
TGTTGCCGTGCTTCATCGAT+CGG 0.498822 3:+1094006 None:intergenic
GTCTCGACGAATTCAAGAGC+AGG 0.503431 3:-1094707 MsG0380011536.01.T01:CDS
AATTGGAGTACTAGTCCATC+CGG 0.508594 3:-1094666 MsG0380011536.01.T01:CDS
GAAACAAAGACAAATATCTT+CGG 0.521533 3:-1094524 MsG0380011536.01.T01:CDS
AACAAGTTGGCAGGATGCCG+GGG 0.522411 3:-1093987 MsG0380011536.01.T01:CDS
GCTTCTAACAAAGAAGCTAA+AGG 0.533192 3:-1094567 MsG0380011536.01.T01:CDS
TTCAGCTTATGGATAAGTTG+TGG 0.543462 3:-1096399 MsG0380011536.01.T01:CDS
GTACATTCCACATAATAGAA+AGG 0.548755 3:-1094820 MsG0380011536.01.T01:CDS
AATTACGCTTCATCATCAAA+AGG 0.550801 3:-1094603 MsG0380011536.01.T01:CDS
AAGCACGGCAACAAGTTGGC+AGG 0.551588 3:-1093996 MsG0380011536.01.T01:CDS
GTAATACATAGAGTAGAGCC+AGG 0.571111 3:-1094639 MsG0380011536.01.T01:CDS
TCTTTAGAGAAGGCTGCTAG+TGG 0.572809 3:-1096486 MsG0380011536.01.T01:CDS
ACAAAGAAGATCTTTAGAGA+AGG 0.579527 3:-1096496 MsG0380011536.01.T01:CDS
ATCGGTGAAGAAAATGTAGA+CGG 0.592560 3:-1094867 MsG0380011536.01.T01:CDS
CTATGTATTACACTTCCGGA+TGG 0.592663 3:+1094651 None:intergenic
AGTTGTGGCAATGGATATGG+AGG 0.595571 3:-1096384 MsG0380011536.01.T01:CDS
GATGAAGCACGGCAACAAGT+TGG 0.597273 3:-1094000 MsG0380011536.01.T01:CDS
CTTTAGAGAAGGCTGCTAGT+GGG 0.597719 3:-1096485 MsG0380011536.01.T01:CDS
AGAAAGATCCAATCGTCGGT+CGG 0.598915 3:+1094363 None:intergenic
ATCTTGAGAATAGTATCCCC+CGG 0.601238 3:+1093970 None:intergenic
ACTGGAACAAAGATGAGCAA+AGG 0.611162 3:-1095010 MsG0380011536.01.T01:CDS
ACAAGTTGGCAGGATGCCGG+GGG 0.614040 3:-1093986 MsG0380011536.01.T01:CDS
TTATGGATAAGTTGTGGCAA+TGG 0.614532 3:-1096393 MsG0380011536.01.T01:CDS
TCAGAGTAGAAAGTCTCAGA+AGG 0.620858 3:+1094927 None:intergenic
TTCGTCGAGACCGAGCGGCA+CGG 0.626595 3:+1094719 None:intergenic
AATTTCTCTTCCGAAGAACA+CGG 0.628660 3:+1094498 None:intergenic
TCCAAGAAAGATCCAATCGT+CGG 0.633621 3:+1094359 None:intergenic
CGGATCCGATCGATGAAGCA+CGG 0.639939 3:-1094011 MsG0380011536.01.T01:CDS
TCTCGACGAATTCAAGAGCA+GGG 0.643708 3:-1094706 MsG0380011536.01.T01:CDS
TAATTGTATTCATCACCACC+TGG 0.670479 3:+1094621 None:intergenic
GTTCTCGAACGAGTTACGAT+CGG 0.679894 3:+1094116 None:intergenic
TCGAACGAGTTACGATCGGA+CGG 0.703621 3:+1094120 None:intergenic
TTGAATTCGTCGAGACCGAG+CGG 0.704535 3:+1094714 None:intergenic
TGCTGTTGAGAAAATGCTCG+AGG 0.711275 3:-1094190 MsG0380011536.01.T01:CDS
ATACATAGAGTAGAGCCAGG+TGG 0.769561 3:-1094636 MsG0380011536.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATCTTTAACAAAAAAATA+AGG + Chr3:1093764-1093783 None:intergenic 10.0%
!!! ATTACTGTTTTTTTTTTTTT+TGG - Chr3:1094292-1094311 MsG0380011536.01.T01:CDS 10.0%
!!! TTACTGTTTTTTTTTTTTTT+GGG - Chr3:1094293-1094312 MsG0380011536.01.T01:CDS 10.0%
!! ATATAATGATGAGATATAAT+CGG + Chr3:1094934-1094953 None:intergenic 15.0%
!! ATGTTGTTGAATATTTATTA+CGG - Chr3:1094243-1094262 MsG0380011536.01.T01:CDS 15.0%
!! ATTCCAAAAAAATATAACAT+TGG + Chr3:1093864-1093883 None:intergenic 15.0%
!!! TACTGTTTTTTTTTTTTTTG+GGG - Chr3:1094294-1094313 MsG0380011536.01.T01:CDS 15.0%
!! ATCACAATAGAGAAATAATT+TGG - Chr3:1094546-1094565 MsG0380011536.01.T01:CDS 20.0%
!! ATTTGCCTATAAAAATAACA+TGG + Chr3:1093935-1093954 None:intergenic 20.0%
!! TAAATACTAATAATACCTTG+TGG - Chr3:1094215-1094234 MsG0380011536.01.T01:CDS 20.0%
!! TAACAAAAAAATAAGGTCAT+CGG + Chr3:1093757-1093776 None:intergenic 20.0%
!! TATTACCAAAATAATGATCA+AGG + Chr3:1096358-1096377 None:intergenic 20.0%
!! TATTTATATGTAGATGTTTC+TGG - Chr3:1095046-1095065 MsG0380011536.01.T01:CDS 20.0%
!! TTAAAAAACATGTACGAATA+AGG + Chr3:1094020-1094039 None:intergenic 20.0%
!! TTATAAAGTTTCTTTGTCTT+TGG - Chr3:1093651-1093670 MsG0380011536.01.T01:intron 20.0%
!! TTGTTAAAGATATTGAAGTA+TGG - Chr3:1093771-1093790 MsG0380011536.01.T01:intron 20.0%
!! TTTCAACATATGAAAATTCT+TGG - Chr3:1094615-1094634 MsG0380011536.01.T01:CDS 20.0%
!!! ATTCGTACATGTTTTTTAAT+AGG - Chr3:1094021-1094040 MsG0380011536.01.T01:CDS 20.0%
!!! GTTATCCATGTTATTTTTAT+AGG - Chr3:1093927-1093946 MsG0380011536.01.T01:CDS 20.0%
!!! TGACCAATGTTATATTTTTT+TGG - Chr3:1093858-1093877 MsG0380011536.01.T01:CDS 20.0%
!!! TTAAAAGATTTTGATTTGCA+TGG - Chr3:1095703-1095722 MsG0380011536.01.T01:intron 20.0%
!!! TTATCTTGACTTGAATTTAT+CGG - Chr3:1096173-1096192 MsG0380011536.01.T01:intron 20.0%
! AATGGTAAATAGAAATGTTC+CGG - Chr3:1096071-1096090 MsG0380011536.01.T01:intron 25.0%
! ATGAGGAATATTTGACTAAA+GGG - Chr3:1095137-1095156 MsG0380011536.01.T01:intron 25.0%
! GAAACAAAGACAAATATCTT+CGG - Chr3:1095578-1095597 MsG0380011536.01.T01:intron 25.0%
! GCTAAAATTGTTAGAAAACA+AGG - Chr3:1094316-1094335 MsG0380011536.01.T01:CDS 25.0%
! TACGGAATATAGAATGAATT+TGG - Chr3:1094261-1094280 MsG0380011536.01.T01:CDS 25.0%
! TGGTATTAATATGAAACACA+TGG + Chr3:1094172-1094191 None:intergenic 25.0%
! TTTAGGAACTGATATAACAA+AGG + Chr3:1094958-1094977 None:intergenic 25.0%
!! AAAGAGTATAGCAAAGATAT+AGG - Chr3:1096246-1096265 MsG0380011536.01.T01:intron 25.0%
!! AAGATATTTGTCTTTGTTTC+TGG + Chr3:1095578-1095597 None:intergenic 25.0%
!! AATAACTGTGGAGATATTTT+AGG + Chr3:1094975-1094994 None:intergenic 25.0%
!! TATTGGATTTAGTTCATAGA+AGG - Chr3:1094895-1094914 MsG0380011536.01.T01:CDS 25.0%
!! TTCTTCCTTGATCATTATTT+TGG - Chr3:1096350-1096369 MsG0380011536.01.T01:intron 25.0%
!! TTGAAAATTGATTTCTTGTC+TGG - Chr3:1093899-1093918 MsG0380011536.01.T01:CDS 25.0%
!!! GTCTTTGGTTTTTATTTTGT+GGG - Chr3:1093666-1093685 MsG0380011536.01.T01:intron 25.0%
!!! GTTAGTAGTTAATTTGTTAG+AGG - Chr3:1093955-1093974 MsG0380011536.01.T01:CDS 25.0%
!!! TAGTTAATTTGTTAGAGACA+GGG - Chr3:1094054-1094073 MsG0380011536.01.T01:CDS 25.0%
!!! TCTTTGGTTTTTATTTTGTG+GGG - Chr3:1093667-1093686 MsG0380011536.01.T01:intron 25.0%
!!! TGTCTTTGGTTTTTATTTTG+TGG - Chr3:1093665-1093684 MsG0380011536.01.T01:intron 25.0%
!!! TGTTTTGGTATTTGACTATA+TGG - Chr3:1093797-1093816 MsG0380011536.01.T01:CDS 25.0%
AAAAACATGTACGAATAAGG+AGG + Chr3:1094017-1094036 None:intergenic 30.0%
AAAAATAACATGGATAACCG+AGG + Chr3:1093925-1093944 None:intergenic 30.0%
AACTTATCCATAAGCTGAAA+AGG + Chr3:1093702-1093721 None:intergenic 30.0%
AATTACGCTTCATCATCAAA+AGG - Chr3:1095499-1095518 MsG0380011536.01.T01:intron 30.0%
AGTATTGTGAAAGAGATTCA+GGG + Chr3:1094103-1094122 None:intergenic 30.0%
ATAAACACACACATAAGGAA+AGG - Chr3:1094785-1094804 MsG0380011536.01.T01:CDS 30.0%
ATGTCAGTGTAAAATAACTG+TGG + Chr3:1094987-1095006 None:intergenic 30.0%
ATGTTAGTGATCTTGATTCT+TGG - Chr3:1096462-1096481 MsG0380011536.01.T01:CDS 30.0%
CAAATATTCCTCATCAGATT+TGG + Chr3:1095131-1095150 None:intergenic 30.0%
CAGTTAGTTCCAAAATCAAT+TGG - Chr3:1095419-1095438 MsG0380011536.01.T01:intron 30.0%
CTGATATATGCTGAAGAAAA+TGG - Chr3:1095937-1095956 MsG0380011536.01.T01:intron 30.0%
GACAAAACCAATGATCTTAT+TGG - Chr3:1095202-1095221 MsG0380011536.01.T01:intron 30.0%
GATGAGGAATATTTGACTAA+AGG - Chr3:1095136-1095155 MsG0380011536.01.T01:intron 30.0%
GCAATTGGATCATATACTTA+GGG - Chr3:1096502-1096521 MsG0380011536.01.T01:CDS 30.0%
GTACATTCCACATAATAGAA+AGG - Chr3:1095282-1095301 MsG0380011536.01.T01:intron 30.0%
GTTGTGTAGCTTATTCTTAT+TGG - Chr3:1094878-1094897 MsG0380011536.01.T01:CDS 30.0%
TACTCTATGTATTACACTTC+CGG + Chr3:1095458-1095477 None:intergenic 30.0%
TCAACAACATAAAATCCACA+AGG + Chr3:1094233-1094252 None:intergenic 30.0%
TCAATTATGTAGCACTTGTT+TGG - Chr3:1094658-1094677 MsG0380011536.01.T01:CDS 30.0%
TCATAAAGCTTCAAGTGTAA+TGG + Chr3:1094192-1094211 None:intergenic 30.0%
TCATGTTCCTTTCTATTATG+TGG + Chr3:1095292-1095311 None:intergenic 30.0%
TGCAATTGGATCATATACTT+AGG - Chr3:1096501-1096520 MsG0380011536.01.T01:CDS 30.0%
TTAACAACATAAACTAGCAG+AGG - Chr3:1094466-1094485 MsG0380011536.01.T01:CDS 30.0%
TTTAGATATCGAACCCATTT+CGG + Chr3:1095820-1095839 None:intergenic 30.0%
! ACAAAGAAGATCTTTAGAGA+AGG - Chr3:1093606-1093625 MsG0380011536.01.T01:CDS 30.0%
!! AAAGCTTGAATTTCTAGCTT+CGG + Chr3:1094737-1094756 None:intergenic 30.0%
!! ACTAGTACTCCAATTGATTT+TGG + Chr3:1095431-1095450 None:intergenic 30.0%
!! AGTAGTTAATTTGTTAGAGG+AGG - Chr3:1093958-1093977 MsG0380011536.01.T01:CDS 30.0%
!! GTAGTTAATTTGTTAGAGAC+AGG - Chr3:1094053-1094072 MsG0380011536.01.T01:CDS 30.0%
!! GTCTCATTTTTCTATGCAAT+TGG - Chr3:1096487-1096506 MsG0380011536.01.T01:CDS 30.0%
!!! ATTGAAGTATGGTCTTGTTT+TGG - Chr3:1093782-1093801 MsG0380011536.01.T01:intron 30.0%
!!! TGACTTGAATTTATCGGTTT+TGG - Chr3:1096179-1096198 MsG0380011536.01.T01:intron 30.0%
!!! TTTTGATTTGCATGGTAGTT+TGG - Chr3:1095711-1095730 MsG0380011536.01.T01:intron 30.0%
AATTTCTCTTCCGAAGAACA+CGG + Chr3:1095607-1095626 None:intergenic 35.0%
ATAAGTTGTGGCAATGGATA+TGG - Chr3:1093715-1093734 MsG0380011536.01.T01:intron 35.0%
ATCGGTGAAGAAAATGTAGA+CGG - Chr3:1095235-1095254 MsG0380011536.01.T01:intron 35.0%
CAAAAACTCCAAATCTGATG+AGG - Chr3:1095120-1095139 MsG0380011536.01.T01:intron 35.0%
CGAGAATAAACACACACATA+AGG - Chr3:1094780-1094799 MsG0380011536.01.T01:CDS 35.0%
CGAGTTACCAATAAGATCAT+TGG + Chr3:1095212-1095231 None:intergenic 35.0%
GAAAACAAGGCAGAACTAAA+AGG - Chr3:1094329-1094348 MsG0380011536.01.T01:CDS 35.0%
GCTTCTAACAAAGAAGCTAA+AGG - Chr3:1095535-1095554 MsG0380011536.01.T01:intron 35.0%
GTGAATCTTCAAAGTCACTA+TGG - Chr3:1095841-1095860 MsG0380011536.01.T01:intron 35.0%
TAATTGTATTCATCACCACC+TGG + Chr3:1095484-1095503 None:intergenic 35.0%
TATGTGTGTGTTTATTCTCG+CGG + Chr3:1094780-1094799 None:intergenic 35.0%
TTATGGATAAGTTGTGGCAA+TGG - Chr3:1093709-1093728 MsG0380011536.01.T01:intron 35.0%
TTCAGCTTATGGATAAGTTG+TGG - Chr3:1093703-1093722 MsG0380011536.01.T01:intron 35.0%
TTGAGCATGGTTGAAGTTTA+CGG - Chr3:1095883-1095902 MsG0380011536.01.T01:intron 35.0%
! AGAACAGTGATGATGATGTT+TGG - Chr3:1096004-1096023 MsG0380011536.01.T01:intron 35.0%
! ATTTTACTGCACATTGAGCA+TGG - Chr3:1095870-1095889 MsG0380011536.01.T01:intron 35.0%
! CTTATTGGTAACTCGCTTAT+CGG - Chr3:1095217-1095236 MsG0380011536.01.T01:intron 35.0%
! GAGTATTGTGAAAGAGATTC+AGG + Chr3:1094104-1094123 None:intergenic 35.0%
! TGGTTTTCCTTTTCAGCTTA+TGG - Chr3:1093692-1093711 MsG0380011536.01.T01:intron 35.0%
! TTCTTCTGAGAACGTTGAAA+TGG - Chr3:1096053-1096072 MsG0380011536.01.T01:intron 35.0%
!! ATTTCTAGCTTCGGAAATCA+CGG + Chr3:1094728-1094747 None:intergenic 35.0%
!!! GGTTTTTATTTTGTGGGGAT+TGG - Chr3:1093672-1093691 MsG0380011536.01.T01:intron 35.0%
AAACATCGATCTAGTCCTTC+GGG - Chr3:1094136-1094155 MsG0380011536.01.T01:CDS 40.0%
ACTGGAACAAAGATGAGCAA+AGG - Chr3:1095092-1095111 MsG0380011536.01.T01:intron 40.0%
AGGTAGAAATGTTAGCACCA+GGG - Chr3:1093978-1093997 MsG0380011536.01.T01:CDS 40.0%
ATCTTGAGAATAGTATCCCC+CGG + Chr3:1096135-1096154 None:intergenic 40.0%
CAAACATCGATCTAGTCCTT+CGG - Chr3:1094135-1094154 MsG0380011536.01.T01:CDS 40.0%
CTATGTATTACACTTCCGGA+TGG + Chr3:1095454-1095473 None:intergenic 40.0%
GAAGGACTAGATCGATGTTT+GGG + Chr3:1094136-1094155 None:intergenic 40.0%
GTAATACATAGAGTAGAGCC+AGG - Chr3:1095463-1095482 MsG0380011536.01.T01:intron 40.0%
TCAGAGTAGAAAGTCTCAGA+AGG + Chr3:1095178-1095197 None:intergenic 40.0%
TCCAAGAAAGATCCAATCGT+CGG + Chr3:1095746-1095765 None:intergenic 40.0%
TGTACGAATAAGGAGGTTCA+TGG + Chr3:1094010-1094029 None:intergenic 40.0%
TGTTAGAGACAGGGAAATGT+TGG - Chr3:1094063-1094082 MsG0380011536.01.T01:CDS 40.0%
TGTTCTTCAGGAACCGAAAT+GGG - Chr3:1095804-1095823 MsG0380011536.01.T01:intron 40.0%
TTCCAGTTTGATACCACAAC+CGG + Chr3:1095079-1095098 None:intergenic 40.0%
TTGTTCTTCAGGAACCGAAA+TGG - Chr3:1095803-1095822 MsG0380011536.01.T01:intron 40.0%
! AAGGAAAGGTACATTGCAGT+TGG - Chr3:1094799-1094818 MsG0380011536.01.T01:CDS 40.0%
! AATTGGAGTACTAGTCCATC+CGG - Chr3:1095436-1095455 MsG0380011536.01.T01:intron 40.0%
! ATTGATTTCTTGTCTGGCCT+CGG - Chr3:1093905-1093924 MsG0380011536.01.T01:CDS 40.0%
! CAAGCTTTAACCTCATCACA+AGG - Chr3:1094749-1094768 MsG0380011536.01.T01:CDS 40.0%
! GGCTCAAAGATTTGTTCTTC+AGG - Chr3:1095792-1095811 MsG0380011536.01.T01:intron 40.0%
!! AGATGTTTCTGGAGAAGTTC+CGG - Chr3:1095057-1095076 MsG0380011536.01.T01:intron 40.0%
!!! ATCGGTTTTGGAGCAGTATT+TGG - Chr3:1096191-1096210 MsG0380011536.01.T01:intron 40.0%
!!! TTAGGGACAATGCTGTTTTG+AGG - Chr3:1096519-1096538 MsG0380011536.01.T01:CDS 40.0%
AACATCGATCTAGTCCTTCG+GGG - Chr3:1094137-1094156 MsG0380011536.01.T01:CDS 45.0%
ACAGGGAAATGTTGGTACCA+GGG - Chr3:1094071-1094090 MsG0380011536.01.T01:CDS 45.0%
ACCGACGATTGGATCTTTCT+TGG - Chr3:1095742-1095761 MsG0380011536.01.T01:intron 45.0%
AGAAAGATCCAATCGTCGGT+CGG + Chr3:1095742-1095761 None:intergenic 45.0%
AGTTGTGGCAATGGATATGG+AGG - Chr3:1093718-1093737 MsG0380011536.01.T01:intron 45.0%
ATACATAGAGTAGAGCCAGG+TGG - Chr3:1095466-1095485 MsG0380011536.01.T01:intron 45.0%
CGAAGGACTAGATCGATGTT+TGG + Chr3:1094137-1094156 None:intergenic 45.0%
GAGGTAGAAATGTTAGCACC+AGG - Chr3:1093977-1093996 MsG0380011536.01.T01:CDS 45.0%
GTTCTCGAACGAGTTACGAT+CGG + Chr3:1095989-1096008 None:intergenic 45.0%
TACTGCCTCAAATGTGAAGC+AGG - Chr3:1095771-1095790 MsG0380011536.01.T01:intron 45.0%
TCTCGACGAATTCAAGAGCA+GGG - Chr3:1095396-1095415 MsG0380011536.01.T01:intron 45.0%
TCTTCGGAATCCGTGTTCTT+CGG - Chr3:1095594-1095613 MsG0380011536.01.T01:intron 45.0%
TGCTGTTGAGAAAATGCTCG+AGG - Chr3:1095912-1095931 MsG0380011536.01.T01:intron 45.0%
TTCCGGTTGTGGTATCAAAC+TGG - Chr3:1095074-1095093 MsG0380011536.01.T01:intron 45.0%
TTGAGCCTGCTTCACATTTG+AGG + Chr3:1095779-1095798 None:intergenic 45.0%
! ATCGATGTTTGGGACAACGA+AGG + Chr3:1094126-1094145 None:intergenic 45.0%
! CTTTAGAGAAGGCTGCTAGT+GGG - Chr3:1093617-1093636 MsG0380011536.01.T01:CDS 45.0%
! TCTTTAGAGAAGGCTGCTAG+TGG - Chr3:1093616-1093635 MsG0380011536.01.T01:CDS 45.0%
!!! GGTTTTGGAGCAGTATTTGG+AGG - Chr3:1096194-1096213 MsG0380011536.01.T01:intron 45.0%
!!! TATAAAAAAAATTTAAAACA+AGG - Chr3:1094591-1094610 MsG0380011536.01.T01:CDS 5.0%
!!! TGTTTTAAATTTTTTTTATA+AGG + Chr3:1094591-1094610 None:intergenic 5.0%
CAGGGAAATGTTGGTACCAG+GGG - Chr3:1094072-1094091 MsG0380011536.01.T01:CDS 50.0%
CGAGAATCACAAACTGGACG+CGG + Chr3:1094686-1094705 None:intergenic 50.0%
GACAGGGAAATGTTGGTACC+AGG - Chr3:1094070-1094089 MsG0380011536.01.T01:CDS 50.0%
GAGACGCGAGAATCACAAAC+TGG + Chr3:1094692-1094711 None:intergenic 50.0%
GATGAAGCACGGCAACAAGT+TGG - Chr3:1096102-1096121 MsG0380011536.01.T01:intron 50.0%
GTCTCGACGAATTCAAGAGC+AGG - Chr3:1095395-1095414 MsG0380011536.01.T01:intron 50.0%
GTGTGTGTTTATTCTCGCGG+TGG + Chr3:1094777-1094796 None:intergenic 50.0%
TCGAACGAGTTACGATCGGA+CGG + Chr3:1095985-1096004 None:intergenic 50.0%
TGGTTTATCCGACCGACGAT+TGG - Chr3:1095731-1095750 MsG0380011536.01.T01:intron 50.0%
TGTTGCCGTGCTTCATCGAT+CGG + Chr3:1096099-1096118 None:intergenic 50.0%
TTGAATTCGTCGAGACCGAG+CGG + Chr3:1095391-1095410 None:intergenic 50.0%
! TTCTGGAGAAGTTCCGGTTG+TGG - Chr3:1095063-1095082 MsG0380011536.01.T01:intron 50.0%
CGGATCCGATCGATGAAGCA+CGG - Chr3:1096091-1096110 MsG0380011536.01.T01:intron 55.0%
CGTGCTTCATCGATCGGATC+CGG + Chr3:1096093-1096112 None:intergenic 55.0%
GAGATTCAGGGTTGAACCCC+TGG + Chr3:1094091-1094110 None:intergenic 55.0%
GAGGTTCATGGTTCGATCCC+TGG + Chr3:1093998-1094017 None:intergenic 55.0%
! AACAAGTTGGCAGGATGCCG+GGG - Chr3:1096115-1096134 MsG0380011536.01.T01:intron 55.0%
! AAGCACGGCAACAAGTTGGC+AGG - Chr3:1096106-1096125 MsG0380011536.01.T01:intron 55.0%
! CAACAAGTTGGCAGGATGCC+GGG - Chr3:1096114-1096133 MsG0380011536.01.T01:intron 55.0%
! GCAACAAGTTGGCAGGATGC+CGG - Chr3:1096113-1096132 MsG0380011536.01.T01:intron 55.0%
CATGGATAGCCTGTCCCCGA+AGG + Chr3:1094154-1094173 None:intergenic 60.0%
CGATCTAGTCCTTCGGGGAC+AGG - Chr3:1094142-1094161 MsG0380011536.01.T01:CDS 60.0%
! ACAAGTTGGCAGGATGCCGG+GGG - Chr3:1096116-1096135 MsG0380011536.01.T01:intron 60.0%
CGCGGTGGCACCTTGTGATG+AGG + Chr3:1094762-1094781 None:intergenic 65.0%
TTCGTCGAGACCGAGCGGCA+CGG + Chr3:1095386-1095405 None:intergenic 65.0%
! TTGTCTGCAGCCGTGCCGCT+CGG - Chr3:1095373-1095392 MsG0380011536.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 1093580 1096544 1093580 ID=MsG0380011536.01;Name=MsG0380011536.01
Chr3 mRNA 1093580 1096544 1093580 ID=MsG0380011536.01.T01;Parent=MsG0380011536.01;Name=MsG0380011536.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0.5|0.66|3|0|520
Chr3 exon 1096352 1096544 1096352 ID=MsG0380011536.01.T01:exon:1111;Parent=MsG0380011536.01.T01
Chr3 exon 1093786 1095065 1093786 ID=MsG0380011536.01.T01:exon:1110;Parent=MsG0380011536.01.T01
Chr3 exon 1093580 1093669 1093580 ID=MsG0380011536.01.T01:exon:1109;Parent=MsG0380011536.01.T01
Chr3 CDS 1096352 1096544 1096352 ID=MsG0380011536.01.T01:cds;Parent=MsG0380011536.01.T01
Chr3 CDS 1093786 1095065 1093786 ID=MsG0380011536.01.T01:cds;Parent=MsG0380011536.01.T01
Chr3 CDS 1093580 1093669 1093580 ID=MsG0380011536.01.T01:cds;Parent=MsG0380011536.01.T01
Gene Sequence

>MsG0380011536.01.T01

ATGCAGAGATCGCGTAAAGCTCTTCAACAAAGAAGATCTTTAGAGAAGGCTGCTAGTGGGAGAAACTGTCTTTATAAAGTTTCTTTGTCTTTGGTTTTTATTTTGTGGGGATTGGTTTTCCTTTTCAGCTTATGGATAAGTTGTGGCAATGGATATGGAGGTATCTTTTTCTTTCCGATGACCTTATTTTTTTATGTTTCTGGAGAAGTTCCGGTTGTGGTATCAAACTGGAACAAAGATGAGCAAAGGAAGTGCAAAAACTCCAAATCTGATGAGGAATATTTGACTAAAGGGCTTGAAGCTTGCGTTCCTTCTGAGACTTTCTACTCTGATCGCGACAAAACCAATGATCTTATTGGTAACTCGCTTATCGGTGAAGAAAATGTAGACGGTTTTGAACACAGTGATAGAGAAAAGTACATTCCACATAATAGAAAGGAACATGAAGTTGTTGAAAGATTTGAATCTTCTGCGAAAAATGAAAATGATGTGCAAAAATTTGATCGCTTGTCTGCAGCCGTGCCGCTCGGTCTCGACGAATTCAAGAGCAGGGCAGTTAGTTCCAAAATCAATTGGAGTACTAGTCCATCCGGAAGTGTAATACATAGAGTAGAGCCAGGTGGTGATGAATACAATTACGCTTCATCATCAAAAGGTGCAAAAGTGTTAGCTTCTAACAAAGAAGCTAAAGGAGCTTCTAATATCTTAACCAGAAACAAAGACAAATATCTTCGGAATCCGTGTTCTTCGGAAGAGAAATTTGTCGTTATAGAACTTTCAGAAGAAACTTTAGTAGATACAATAGAAATAGCTAACTTTGAGCATTATTCTTCTAATTTAAAAGATTTTGATTTGCATGGTAGTTTGGTTTATCCGACCGACGATTGGATCTTTCTTGGAAATTTTACTGCCTCAAATGTGAAGCAGGCTCAAAGATTTGTTCTTCAGGAACCGAAATGGGTTCGATATCTAAAAGTGAATCTTCAAAGTCACTATGGATCAGAATTTTACTGCACATTGAGCATGGTTGAAGTTTACGGTGTTGATGCTGTTGAGAAAATGCTCGAGGATCTGATATATGCTGAAGAAAATGGTGAAAATAAAGTAGCAATAGCACCGTCCGATCGTAACTCGTTCGAGAACAGTGATGATGATGTTTGGAAAATCAATTCTGACACTATAGAAAATTCTTCTGAGAACGTTGAAATGGTAAATAGAAATGTTCCGGATCCGATCGATGAAGCACGGCAACAAGTTGGCAGGATGCCGGGGGATACTATTCTCAAGATTTTGATGCAGAAAGTTCGTTATCTTGACTTGAATTTATCGGTTTTGGAGCAGTATTTGGAGGATTTAAATTTTAGATATGTTAACATTTTCAAAGAGTATAGCAAAGATATAGGAGACAAAGATATAGTTCTACAGATGATCAAAGAAGACATTAGAAGCTTCATTGACAGACAAGATAATATAATGAAAGATGTTAGTGATCTTGATTCTTGGAAGTCTCATTTTTCTATGCAATTGGATCATATACTTAGGGACAATGCTGTTTTGAGGTGA
Protein sequence

>MsG0380011536.01.T01

MQRSRKALQQRRSLEKAASGRNCLYKVSLSLVFILWGLVFLFSLWISCGNGYGGIFFFPMTLFFYVSGEVPVVVSNWNKDEQRKCKNSKSDEEYLTKGLEACVPSETFYSDRDKTNDLIGNSLIGEENVDGFEHSDREKYIPHNRKEHEVVERFESSAKNENDVQKFDRLSAAVPLGLDEFKSRAVSSKINWSTSPSGSVIHRVEPGGDEYNYASSSKGAKVLASNKEAKGASNILTRNKDKYLRNPCSSEEKFVVIELSEETLVDTIEIANFEHYSSNLKDFDLHGSLVYPTDDWIFLGNFTASNVKQAQRFVLQEPKWVRYLKVNLQSHYGSEFYCTLSMVEVYGVDAVEKMLEDLIYAEENGENKVAIAPSDRNSFENSDDDVWKINSDTIENSSENVEMVNRNVPDPIDEARQQVGRMPGDTILKILMQKVRYLDLNLSVLEQYLEDLNFRYVNIFKEYSKDIGDKDIVLQMIKEDIRSFIDRQDNIMKDVSDLDSWKSHFSMQLDHILRDNAVLR*