AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380011803.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011803.01.T01 MTR_3g010800 78.146 302 14 2 32 281 24 325 7.61e-168 468
MsG0380011803.01.T01 MTR_3g062840 28.739 341 143 15 5 276 1 310 4.60e-24 99.4
MsG0380011803.01.T01 MTR_5g075750 29.682 283 134 11 41 276 37 301 5.00e-22 93.6
MsG0380011803.01.T01 MTR_8g461170 31.754 211 120 9 28 230 12 206 1.04e-21 92.4
MsG0380011803.01.T01 MTR_7g074120 28.125 224 138 8 22 239 15 221 2.94e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380011803.01.T01 AT1G62981 39.474 304 110 11 40 276 45 341 1.86e-57 187
MsG0380011803.01.T01 AT1G62981 39.474 304 110 11 40 276 45 341 1.86e-57 187
MsG0380011803.01.T01 AT4G22900 43.925 214 107 8 22 230 14 219 3.12e-51 171
MsG0380011803.01.T01 AT4G22900 80.556 36 7 0 240 275 297 332 1.35e-11 64.3
MsG0380011803.01.T01 AT4G11950 37.788 217 118 6 22 230 10 217 9.26e-48 162
MsG0380011803.01.T01 AT3G08600 32.642 193 109 10 41 230 37 211 6.47e-20 88.2

Find 41 sgRNAs with CRISPR-Local

Find 211 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAAAACACATGGACATTT+TGG 0.175170 3:-5512715 MsG0380011803.01.T01:intron
AAGCTACCTTCAAATTTATC+AGG 0.315618 3:-5513183 MsG0380011803.01.T01:CDS
CCTTCAAAACTTGCACATAA+TGG 0.317349 3:+5512793 None:intergenic
CAACTTGTTTCTCCAATTGT+TGG 0.336972 3:-5512964 MsG0380011803.01.T01:CDS
TAAGCTAAAATTCCAACAAT+TGG 0.343703 3:+5512952 None:intergenic
TTCAACAACCAAGAAGAAAA+AGG 0.352105 3:-5512829 MsG0380011803.01.T01:CDS
GTTGGTGTTGTTCTAGTTCC+AGG 0.353242 3:+5512448 None:intergenic
TTATGAAGAAGAAGCACTTC+AGG 0.366104 3:-5512506 MsG0380011803.01.T01:CDS
GCATAGAGTATAATAATAAT+TGG 0.373049 3:-5513029 MsG0380011803.01.T01:CDS
AAGGTATGGTGCAAAATTAA+AGG 0.383254 3:-5513118 MsG0380011803.01.T01:CDS
AAGGAGTTTCATCTTGGTAT+TGG 0.399934 3:-5513099 MsG0380011803.01.T01:CDS
GGACCTGGCTTGCGCGAAAC+GGG 0.401408 3:+5516458 None:intergenic
TGGACCTGGCTTGCGCGAAA+CGG 0.413499 3:+5516457 None:intergenic
TTGATGCCTGATAAATTTGA+AGG 0.417038 3:+5513177 None:intergenic
ACACAAACATTTGTTGCTAA+AGG 0.423104 3:+5512739 None:intergenic
GCACTTCAGGTTTCAATGGT+TGG 0.434477 3:-5512493 MsG0380011803.01.T01:CDS
AGAAGCACTTCAGGTTTCAA+TGG 0.442190 3:-5512497 MsG0380011803.01.T01:CDS
GCTTCAATTCCAAGTTGAAA+AGG 0.444070 3:+5512895 None:intergenic
CTTTAAAACCGCCTTGGACC+TGG 0.446471 3:+5516443 None:intergenic
AAATTAAAGGAGTTTCATCT+TGG 0.452708 3:-5513105 MsG0380011803.01.T01:CDS
CTTCCCGTTTCGCGCAAGCC+AGG 0.458412 3:-5516461 MsG0380011803.01.T01:CDS
AACATTACTCTTTCAATACA+TGG 0.463603 3:+5513063 None:intergenic
TTTCAACTTGGAATTGAAGC+TGG 0.480245 3:-5512892 MsG0380011803.01.T01:CDS
TTAGACAAAGATTTCAAGAC+AGG 0.484697 3:-5513222 MsG0380011803.01.T01:CDS
GTTCTAGTTCCAGGTGCAGT+AGG 0.488529 3:+5512457 None:intergenic
TGAATGTGTAATCTCTTATG+AGG 0.490113 3:+5513250 None:intergenic
TTCAATCTTTAAAACCGCCT+TGG 0.499840 3:+5516437 None:intergenic
GAAGGTAGCTTCACTGATTG+TGG 0.501570 3:+5513195 None:intergenic
GGGTTAAGAAAGGTCAAGAA+TGG 0.504668 3:-5512547 MsG0380011803.01.T01:CDS
TGTGGAAGTTTAACAAGGTA+TGG 0.509899 3:-5513132 MsG0380011803.01.T01:CDS
ATGGTTGTTAGGGTTAAGAA+AGG 0.531836 3:-5512557 MsG0380011803.01.T01:intron
AAGGTCAAGAATGGTTCAGA+TGG 0.536006 3:-5512538 MsG0380011803.01.T01:CDS
GTGAGAGCTCCTACTGCACC+TGG 0.585262 3:-5512466 MsG0380011803.01.T01:CDS
CGCGCAAGCCAGGTCCAAGG+CGG 0.599154 3:-5516451 MsG0380011803.01.T01:intron
TTTCGCGCAAGCCAGGTCCA+AGG 0.603830 3:-5516454 MsG0380011803.01.T01:CDS
GTTTGTGTTGCTAAAACACA+TGG 0.605683 3:-5512724 MsG0380011803.01.T01:CDS
TTAGATGTGGAAGTTTAACA+AGG 0.623871 3:-5513137 MsG0380011803.01.T01:CDS
GATACTGTGAGATTTAGATG+TGG 0.646729 3:-5513150 MsG0380011803.01.T01:CDS
TAGTCATGTTGCTCAAGTGT+TGG 0.655160 3:+5512430 None:intergenic
ATGTGTAATCTCTTATGAGG+AGG 0.665772 3:+5513253 None:intergenic
TGCAGTAAACCTTATCAACG+AGG 0.756012 3:+5512394 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTGATATATTCT+AGG + Chr3:5514575-5514594 None:intergenic 10.0%
!! AAAACAAAACAAAAAAAACT+AGG + Chr3:5513784-5513803 None:intergenic 15.0%
!!! ATTTTGTTTCTTTTTTTGAA+TGG + Chr3:5514130-5514149 None:intergenic 15.0%
!!! TTACAAACAAACATTTTATA+AGG - Chr3:5513511-5513530 MsG0380011803.01.T01:intron 15.0%
!!! TTTAGGTTAGTTTTATATAA+AGG - Chr3:5513885-5513904 MsG0380011803.01.T01:intron 15.0%
!!! TTTTGATCTTTTAATGTATA+AGG - Chr3:5513023-5513042 MsG0380011803.01.T01:CDS 15.0%
!! AAAAACAAATAAAAAAGGTG+TGG + Chr3:5514405-5514424 None:intergenic 20.0%
!! AGAAATGATTGTGATAATAT+TGG - Chr3:5513361-5513380 MsG0380011803.01.T01:intron 20.0%
!! ATAGTATTATCCAGAATAAT+TGG + Chr3:5513912-5513931 None:intergenic 20.0%
!! ATATATAACTTCAAAAGGAA+AGG + Chr3:5515524-5515543 None:intergenic 20.0%
!! ATGGCAAAAACAAATAAAAA+AGG + Chr3:5514410-5514429 None:intergenic 20.0%
!! CAACAAATCTAAAAATGAAA+AGG + Chr3:5513983-5514002 None:intergenic 20.0%
!! GCATAGAGTATAATAATAAT+TGG - Chr3:5515920-5515939 MsG0380011803.01.T01:intron 20.0%
!! TGAAATAAATGAAAAGGTAA+AGG + Chr3:5514218-5514237 None:intergenic 20.0%
!! TGTTACAAATGTTGTAATTT+GGG - Chr3:5514154-5514173 MsG0380011803.01.T01:intron 20.0%
!! TGTTCAAAGACAAATTTAAT+CGG + Chr3:5514055-5514074 None:intergenic 20.0%
!! TTGTTACAAATGTTGTAATT+TGG - Chr3:5514153-5514172 MsG0380011803.01.T01:intron 20.0%
!! TTTATCTAAAAACTCACATA+TGG + Chr3:5515312-5515331 None:intergenic 20.0%
!!! AACACTAGAAAATACTTTTT+CGG - Chr3:5513942-5513961 MsG0380011803.01.T01:intron 20.0%
!!! ATGTTTTTTTTTTGTGAAGT+GGG - Chr3:5513842-5513861 MsG0380011803.01.T01:intron 20.0%
!!! CCTTTTCATTTATTTCAAAA+AGG - Chr3:5514221-5514240 MsG0380011803.01.T01:intron 20.0%
!!! CCTTTTTGAAATAAATGAAA+AGG + Chr3:5514224-5514243 None:intergenic 20.0%
!!! GGTGATTTCAATTTTATTAA+AGG + Chr3:5514680-5514699 None:intergenic 20.0%
!!! TATGTTTTTTTTTTGTGAAG+TGG - Chr3:5513841-5513860 MsG0380011803.01.T01:intron 20.0%
!!! TTTTTTTAAGAGTTTCGTAT+TGG - Chr3:5514588-5514607 MsG0380011803.01.T01:intron 20.0%
! AAATTAAAGGAGTTTCATCT+TGG - Chr3:5515844-5515863 MsG0380011803.01.T01:intron 25.0%
! AACATTACTCTTTCAATACA+TGG + Chr3:5515889-5515908 None:intergenic 25.0%
! AATCAAGAACTTAATGCTTT+CGG - Chr3:5513208-5513227 MsG0380011803.01.T01:CDS 25.0%
! AGGGAAAACTTCTATTTAAA+TGG + Chr3:5512755-5512774 None:intergenic 25.0%
! ATATAAAGGACCAATTATTC+TGG - Chr3:5513899-5513918 MsG0380011803.01.T01:intron 25.0%
! ATTGATTAAGCCATATTTGA+GGG + Chr3:5514877-5514896 None:intergenic 25.0%
! ATTTCTCGAACAATTACTTA+CGG + Chr3:5514850-5514869 None:intergenic 25.0%
! CAAAACACAATTAGTGTTAT+TGG - Chr3:5514318-5514337 MsG0380011803.01.T01:intron 25.0%
! GGGAAAACTTCTATTTAAAT+GGG + Chr3:5512754-5512773 None:intergenic 25.0%
! GTGTCATATATAACTTCAAA+AGG + Chr3:5515529-5515548 None:intergenic 25.0%
! TAAGCTAAAATTCCAACAAT+TGG + Chr3:5516000-5516019 None:intergenic 25.0%
! TAAGTCTATAACGTATTCTT+TGG - Chr3:5515227-5515246 MsG0380011803.01.T01:intron 25.0%
! TATACACGTGAGTATAATAT+AGG + Chr3:5513600-5513619 None:intergenic 25.0%
! TCTGAACTAAAAAAAACAAC+AGG + Chr3:5514651-5514670 None:intergenic 25.0%
! TTCGATTAAACTACTCTATA+TGG - Chr3:5514899-5514918 MsG0380011803.01.T01:intron 25.0%
! TTTCACAATAGTTCACATTA+AGG + Chr3:5513540-5513559 None:intergenic 25.0%
!! TTTGTTATCGTTTAAGGATT+TGG - Chr3:5513276-5513295 MsG0380011803.01.T01:intron 25.0%
!!! GTTTTTACTTTTATGTCGTT+AGG - Chr3:5513479-5513498 MsG0380011803.01.T01:intron 25.0%
!!! TTTTTTTTGTTCTTGTCTCA+TGG - Chr3:5515577-5515596 MsG0380011803.01.T01:intron 25.0%
AAAGATTACACCTAAGAGTA+GGG + Chr3:5514549-5514568 None:intergenic 30.0%
AAATCAGGAATGTTACTCTA+TGG + Chr3:5515468-5515487 None:intergenic 30.0%
AAGCTACCTTCAAATTTATC+AGG - Chr3:5515766-5515785 MsG0380011803.01.T01:intron 30.0%
AAGGTATGGTGCAAAATTAA+AGG - Chr3:5515831-5515850 MsG0380011803.01.T01:intron 30.0%
ACATATGGTTCTCTATCAAA+AGG + Chr3:5515297-5515316 None:intergenic 30.0%
AGAAATAACACCCTCAAATA+TGG - Chr3:5514864-5514883 MsG0380011803.01.T01:intron 30.0%
ATTCTAGACATTTAAGAGAG+AGG - Chr3:5512806-5512825 MsG0380011803.01.T01:CDS 30.0%
CAAAGAGATTCAAGATGATT+TGG - Chr3:5513095-5513114 MsG0380011803.01.T01:CDS 30.0%
CAAATTTAATCGGATAGTTC+TGG + Chr3:5514045-5514064 None:intergenic 30.0%
CATGGTGATAAAAAGCAAAA+TGG + Chr3:5514429-5514448 None:intergenic 30.0%
CTTACATGAAAACATTGTCA+CGG - Chr3:5513709-5513728 MsG0380011803.01.T01:intron 30.0%
GATTGATTAAGCCATATTTG+AGG + Chr3:5514878-5514897 None:intergenic 30.0%
GGAAAGAAAATAGCTAAATC+AGG + Chr3:5515483-5515502 None:intergenic 30.0%
GTAATAGATGAGAAAGGTTA+GGG + Chr3:5515414-5515433 None:intergenic 30.0%
GTCATCTGAACACTATTTAA+TGG + Chr3:5515134-5515153 None:intergenic 30.0%
TAAACGATAACAAAGTCGAT+CGG + Chr3:5513270-5513289 None:intergenic 30.0%
TAATAGATGAGAAAGGTTAG+GGG + Chr3:5515413-5515432 None:intergenic 30.0%
TAGAAATAACGATATCGCTT+TGG - Chr3:5513322-5513341 MsG0380011803.01.T01:intron 30.0%
TAGACATGTATACTATGCAA+AGG + Chr3:5512944-5512963 None:intergenic 30.0%
TATCTACTCTTGTAGTATTG+AGG - Chr3:5512975-5512994 MsG0380011803.01.T01:CDS 30.0%
TGAATGTGTAATCTCTTATG+AGG + Chr3:5515702-5515721 None:intergenic 30.0%
TGACATTTCATTGTTGTCAT+TGG - Chr3:5515624-5515643 MsG0380011803.01.T01:intron 30.0%
TGTAATAGATGAGAAAGGTT+AGG + Chr3:5515415-5515434 None:intergenic 30.0%
TGTAGTGTAATAGATGAGAA+AGG + Chr3:5515420-5515439 None:intergenic 30.0%
TTAGACAAAGATTTCAAGAC+AGG - Chr3:5515727-5515746 MsG0380011803.01.T01:intron 30.0%
TTAGATGTGGAAGTTTAACA+AGG - Chr3:5515812-5515831 MsG0380011803.01.T01:intron 30.0%
TTCAACAACCAAGAAGAAAA+AGG - Chr3:5516120-5516139 MsG0380011803.01.T01:intron 30.0%
TTCTCCAAAAAAAAAGATGC+TGG - Chr3:5513656-5513675 MsG0380011803.01.T01:intron 30.0%
TTGATGCCTGATAAATTTGA+AGG + Chr3:5515775-5515794 None:intergenic 30.0%
TTGTTGTCATTGGAATTTCA+TGG - Chr3:5515634-5515653 MsG0380011803.01.T01:intron 30.0%
! AATGTTGTAATTTGGGTTTG+TGG - Chr3:5514161-5514180 MsG0380011803.01.T01:intron 30.0%
! ACACAAACATTTGTTGCTAA+AGG + Chr3:5516213-5516232 None:intergenic 30.0%
! AGGCTTGATCTATTTTCATA+AGG + Chr3:5515504-5515523 None:intergenic 30.0%
! AGTAGTAATCCTTTTCAACT+TGG - Chr3:5516045-5516064 MsG0380011803.01.T01:intron 30.0%
! ATCGACTTTGTTATCGTTTA+AGG - Chr3:5513270-5513289 MsG0380011803.01.T01:intron 30.0%
! ATGTTGTAATTTGGGTTTGT+GGG - Chr3:5514162-5514181 MsG0380011803.01.T01:intron 30.0%
! CTTTGATACCTTTTTCTTCT+TGG + Chr3:5516131-5516150 None:intergenic 30.0%
! TTTTGTAGCAATGGTTGTTA+GGG - Chr3:5516382-5516401 MsG0380011803.01.T01:intron 30.0%
! TTTTTGTAGCAATGGTTGTT+AGG - Chr3:5516381-5516400 MsG0380011803.01.T01:intron 30.0%
!! AAAAGCATTGTTGTTGTGAA+TGG + Chr3:5514347-5514366 None:intergenic 30.0%
!! AAAGCATTGTTGTTGTGAAT+GGG + Chr3:5514346-5514365 None:intergenic 30.0%
!! TTCCATTGACTTAGTCTTAT+AGG + Chr3:5516305-5516324 None:intergenic 30.0%
!!! AGGTTTACTTTTTGTAGCAA+TGG - Chr3:5516373-5516392 MsG0380011803.01.T01:intron 30.0%
!!! CAAACCAGCATCTTTTTTTT+TGG + Chr3:5513663-5513682 None:intergenic 30.0%
AAACACAAAGCAAGTGGTTT+AGG - Chr3:5512850-5512869 MsG0380011803.01.T01:CDS 35.0%
AAGATTACACCTAAGAGTAG+GGG + Chr3:5514548-5514567 None:intergenic 35.0%
AAGGAGTTTCATCTTGGTAT+TGG - Chr3:5515850-5515869 MsG0380011803.01.T01:intron 35.0%
ACTAGATCAAGGAGATGAAA+AGG + Chr3:5515375-5515394 None:intergenic 35.0%
AGCCTATAAGACTAAGTCAA+TGG - Chr3:5516300-5516319 MsG0380011803.01.T01:intron 35.0%
AGTCAATGGAAAATTGCAGT+TGG - Chr3:5516314-5516333 MsG0380011803.01.T01:intron 35.0%
ATCATTGTCGAAAGGAATTC+AGG - Chr3:5512572-5512591 MsG0380011803.01.T01:intron 35.0%
ATGCTTTCGGATACTTAATC+AGG - Chr3:5513221-5513240 MsG0380011803.01.T01:CDS 35.0%
ATGGTTGTTAGGGTTAAGAA+AGG - Chr3:5516392-5516411 MsG0380011803.01.T01:intron 35.0%
ATGTGTAATCTCTTATGAGG+AGG + Chr3:5515699-5515718 None:intergenic 35.0%
ATTCAACCCGGTAATATCTT+CGG + Chr3:5514704-5514723 None:intergenic 35.0%
ATTCAACTTCTACAGGGATA+AGG - Chr3:5512634-5512653 MsG0380011803.01.T01:intron 35.0%
CAAAGATTACACCTAAGAGT+AGG + Chr3:5514550-5514569 None:intergenic 35.0%
CCTTCAAAACTTGCACATAA+TGG + Chr3:5516159-5516178 None:intergenic 35.0%
CTAGATCAAGGAGATGAAAA+GGG + Chr3:5515374-5515393 None:intergenic 35.0%
CTGCAAAAAATGGAAAGGAT+TGG + Chr3:5514489-5514508 None:intergenic 35.0%
GATACTGTGAGATTTAGATG+TGG - Chr3:5515799-5515818 MsG0380011803.01.T01:intron 35.0%
GTATACTATGCAAAGGATGA+AGG + Chr3:5512937-5512956 None:intergenic 35.0%
GTCAATGGAAAATTGCAGTT+GGG - Chr3:5516315-5516334 MsG0380011803.01.T01:intron 35.0%
TAAACATGAGACCAATTGAG+TGG - Chr3:5514268-5514287 MsG0380011803.01.T01:intron 35.0%
TCAACTGTAAATTTCGTGTG+TGG - Chr3:5515027-5515046 MsG0380011803.01.T01:intron 35.0%
TGATCCTATAAAATGAGAGC+TGG + Chr3:5515064-5515083 None:intergenic 35.0%
TGCTACTGCAAAAAATGGAA+AGG + Chr3:5514494-5514513 None:intergenic 35.0%
TGTGGAAGTTTAACAAGGTA+TGG - Chr3:5515817-5515836 MsG0380011803.01.T01:intron 35.0%
TTCAACTTCTACAGGGATAA+GGG - Chr3:5512635-5512654 MsG0380011803.01.T01:intron 35.0%
TTGGAGAAGATAACTGATGT+AGG + Chr3:5513644-5513663 None:intergenic 35.0%
TTTCAACTTGGAATTGAAGC+TGG - Chr3:5516057-5516076 MsG0380011803.01.T01:intron 35.0%
TTTCGTGTGTGGAATAAATG+AGG - Chr3:5515038-5515057 MsG0380011803.01.T01:intron 35.0%
! AAAAAAGGTGTGGAAGAAGA+GGG + Chr3:5514395-5514414 None:intergenic 35.0%
! AAGCATTGTTGTTGTGAATG+GGG + Chr3:5514345-5514364 None:intergenic 35.0%
! ACTCAATTGGTCTCATGTTT+AGG + Chr3:5514269-5514288 None:intergenic 35.0%
! CAACTTGTTTCTCCAATTGT+TGG - Chr3:5515985-5516004 MsG0380011803.01.T01:intron 35.0%
! GAATGTGCTACTGCAAAAAA+TGG + Chr3:5514499-5514518 None:intergenic 35.0%
! GCTAAAACACATGGACATTT+TGG - Chr3:5516234-5516253 MsG0380011803.01.T01:intron 35.0%
! GCTTCAATTCCAAGTTGAAA+AGG + Chr3:5516057-5516076 None:intergenic 35.0%
! GTTTGTGTTGCTAAAACACA+TGG - Chr3:5516225-5516244 MsG0380011803.01.T01:intron 35.0%
! TAAAAAAGGTGTGGAAGAAG+AGG + Chr3:5514396-5514415 None:intergenic 35.0%
! TGTTGTAATTTGGGTTTGTG+GGG - Chr3:5514163-5514182 MsG0380011803.01.T01:intron 35.0%
!! CCATTATGTGCAAGTTTTGA+AGG - Chr3:5516156-5516175 MsG0380011803.01.T01:intron 35.0%
!! GCTTTAGGTGCTTTTCTTTT+AGG - Chr3:5516353-5516372 MsG0380011803.01.T01:intron 35.0%
!! TTATGAAGAAGAAGCACTTC+AGG - Chr3:5516443-5516462 MsG0380011803.01.T01:intron 35.0%
!! TTCAATCTTTAAAACCGCCT+TGG + Chr3:5512515-5512534 None:intergenic 35.0%
!!! AACACATGGACATTTTGGTT+TGG - Chr3:5516239-5516258 MsG0380011803.01.T01:intron 35.0%
!!! GTGACACTTCTCTCTTTTTT+AGG - Chr3:5513868-5513887 MsG0380011803.01.T01:intron 35.0%
!!! TGTGCAAGTTTTGAAGGAAA+TGG - Chr3:5516162-5516181 MsG0380011803.01.T01:intron 35.0%
AACCATCTGATCTTGATGAG+TGG - Chr3:5515188-5515207 MsG0380011803.01.T01:intron 40.0%
AAGGTCAAGAATGGTTCAGA+TGG - Chr3:5516411-5516430 MsG0380011803.01.T01:intron 40.0%
AAGTGAATAGTGCTAGAGAG+AGG + Chr3:5512775-5512794 None:intergenic 40.0%
ACCAATTGAGTGGTACAAGT+GGG - Chr3:5514278-5514297 MsG0380011803.01.T01:intron 40.0%
ACGCGATATTCAACTTCTAC+AGG - Chr3:5512627-5512646 MsG0380011803.01.T01:intron 40.0%
ACTCATCAAGATCAGATGGT+TGG + Chr3:5515189-5515208 None:intergenic 40.0%
AGAGAGAAACACAAAGCAAG+TGG - Chr3:5512844-5512863 MsG0380011803.01.T01:CDS 40.0%
AGATCGAACTATTTCGCTTG+CGG + Chr3:5513453-5513472 None:intergenic 40.0%
AGTCGAAAAAGGTAGAAGAG+AGG - Chr3:5514988-5515007 MsG0380011803.01.T01:intron 40.0%
AGTGAATAGTGCTAGAGAGA+GGG + Chr3:5512774-5512793 None:intergenic 40.0%
ATACTTAATCAGGCTGGACA+CGG - Chr3:5513231-5513250 MsG0380011803.01.T01:CDS 40.0%
ATCACCACCGAAGATATTAC+CGG - Chr3:5514694-5514713 MsG0380011803.01.T01:intron 40.0%
CCTTTCTTCAAGACGTTTCA+CGG - Chr3:5514736-5514755 MsG0380011803.01.T01:intron 40.0%
CGCGATATTCAACTTCTACA+GGG - Chr3:5512628-5512647 MsG0380011803.01.T01:intron 40.0%
CGTGAAACGTCTTGAAGAAA+GGG + Chr3:5514738-5514757 None:intergenic 40.0%
CTAGTACACAGACTAGATCA+AGG + Chr3:5515386-5515405 None:intergenic 40.0%
CTCATCAAGATCAGATGGTT+GGG + Chr3:5515188-5515207 None:intergenic 40.0%
GACACTTGCACTACTAAAAG+AGG - Chr3:5515267-5515286 MsG0380011803.01.T01:intron 40.0%
GATTCAACTCAAGATCGCTT+TGG - Chr3:5512877-5512896 MsG0380011803.01.T01:CDS 40.0%
GGGTTAAGAAAGGTCAAGAA+TGG - Chr3:5516402-5516421 MsG0380011803.01.T01:intron 40.0%
TAGTCATGTTGCTCAAGTGT+TGG + Chr3:5516522-5516541 None:intergenic 40.0%
TAGTCTACCTTGCACAAACT+CGG + Chr3:5514768-5514787 None:intergenic 40.0%
TCGTCAACACAAGTCGAAAA+AGG - Chr3:5514977-5514996 MsG0380011803.01.T01:intron 40.0%
TTTCGGATACTTAATCAGGC+TGG - Chr3:5513225-5513244 MsG0380011803.01.T01:CDS 40.0%
! AATATAGGATCGTTTTCCGC+AGG + Chr3:5513585-5513604 None:intergenic 40.0%
! AGCGAGATTCTTTTTGCTCT+CGG + Chr3:5512457-5512476 None:intergenic 40.0%
! ATATAGGATCGTTTTCCGCA+GGG + Chr3:5513584-5513603 None:intergenic 40.0%
! GGAATGATGATGACACTTCA+TGG + Chr3:5514447-5514466 None:intergenic 40.0%
! TGAACTGGACTGTTTTATCC+TGG + Chr3:5514806-5514825 None:intergenic 40.0%
! TTTTGCAGTAGCACATTCAC+AGG - Chr3:5514501-5514520 MsG0380011803.01.T01:intron 40.0%
!! AGAAGCACTTCAGGTTTCAA+TGG - Chr3:5516452-5516471 MsG0380011803.01.T01:CDS 40.0%
!! AGTACTATTGGTGCTGCTTT+AGG - Chr3:5516338-5516357 MsG0380011803.01.T01:intron 40.0%
!! ATTGCAGTTGGGAGTACTAT+TGG - Chr3:5516326-5516345 MsG0380011803.01.T01:intron 40.0%
ACGTAATCAAGCACGTGAAC+TGG + Chr3:5514821-5514840 None:intergenic 45.0%
AGTCTACCTTGCACAAACTC+GGG + Chr3:5514767-5514786 None:intergenic 45.0%
ATGATTAACGCAACTCCCTG+CGG - Chr3:5513566-5513585 MsG0380011803.01.T01:intron 45.0%
CACCACTCATCAAGATCAGA+TGG + Chr3:5515193-5515212 None:intergenic 45.0%
CCGTGAAACGTCTTGAAGAA+AGG + Chr3:5514739-5514758 None:intergenic 45.0%
GACCAATTGAGTGGTACAAG+TGG - Chr3:5514277-5514296 MsG0380011803.01.T01:intron 45.0%
GGAAGAAAGATTCATGAGCG+TGG + Chr3:5514468-5514487 None:intergenic 45.0%
TACGCGAGATCATTGTCGAA+AGG - Chr3:5512564-5512583 MsG0380011803.01.T01:intron 45.0%
TCACCACCGAAGATATTACC+GGG - Chr3:5514695-5514714 MsG0380011803.01.T01:intron 45.0%
TCCCACTTGTACCACTCAAT+TGG + Chr3:5514282-5514301 None:intergenic 45.0%
! ACTGGACTGTTTTATCCTGG+AGG + Chr3:5514803-5514822 None:intergenic 45.0%
! GAAGGTAGCTTCACTGATTG+TGG + Chr3:5515757-5515776 None:intergenic 45.0%
! GAGGCCAGCTCTCATTTTAT+AGG - Chr3:5515057-5515076 MsG0380011803.01.T01:intron 45.0%
! GCACTTCAGGTTTCAATGGT+TGG - Chr3:5516456-5516475 MsG0380011803.01.T01:CDS 45.0%
! GTTTTCACACCCCTACTCTT+AGG - Chr3:5514536-5514555 MsG0380011803.01.T01:intron 45.0%
!! GTTGGTGTTGTTCTAGTTCC+AGG + Chr3:5516504-5516523 None:intergenic 45.0%
!! TCGGATAGTTCTGGTGTTTG+TGG + Chr3:5514036-5514055 None:intergenic 45.0%
ACGTCTTGAAGAAAGGGACC+TGG + Chr3:5514732-5514751 None:intergenic 50.0%
CAACCCGGTAATATCTTCGG+TGG + Chr3:5514701-5514720 None:intergenic 50.0%
GGACACGAAGGATCTTGACA+TGG - Chr3:5512898-5512917 MsG0380011803.01.T01:CDS 50.0%
TGAATATCGCGTAAGCGAGC+TGG + Chr3:5512619-5512638 None:intergenic 50.0%
TTCTACTCCTTCTGTCCCGT+CGG + Chr3:5514943-5514962 None:intergenic 50.0%
! CAAGATCGCTTTGGACACGA+AGG - Chr3:5512886-5512905 MsG0380011803.01.T01:CDS 50.0%
! CGATATCGCTTTGGACACGA+AGG - Chr3:5513331-5513350 MsG0380011803.01.T01:intron 50.0%
! GGACTGTTTTATCCTGGAGG+CGG + Chr3:5514800-5514819 None:intergenic 50.0%
!! CTTTAAAACCGCCTTGGACC+TGG + Chr3:5512509-5512528 None:intergenic 50.0%
!! GTTCTAGTTCCAGGTGCAGT+AGG + Chr3:5516495-5516514 None:intergenic 50.0%
CGAAGACCACTCGAAACCGA+CGG - Chr3:5514924-5514943 MsG0380011803.01.T01:intron 55.0%
CGAGCTGGAAGCGATTCAAG+AGG + Chr3:5512604-5512623 None:intergenic 55.0%
CTACAGGGATAAGGGCTACG+TGG - Chr3:5512643-5512662 MsG0380011803.01.T01:intron 55.0%
GAAGACCACTCGAAACCGAC+GGG - Chr3:5514925-5514944 MsG0380011803.01.T01:intron 55.0%
GACCTGGTCGTGATTCAACC+CGG + Chr3:5514716-5514735 None:intergenic 55.0%
GCACTACCCGAGTTTGTGCA+AGG - Chr3:5514758-5514777 MsG0380011803.01.T01:intron 55.0%
GCTACGTGGCAAGACTTCAC+TGG - Chr3:5512657-5512676 MsG0380011803.01.T01:intron 55.0%
! GTTTTATCCTGGAGGCGGCA+CGG + Chr3:5514795-5514814 None:intergenic 55.0%
! TACCGGGTTGAATCACGACC+AGG - Chr3:5514711-5514730 MsG0380011803.01.T01:intron 55.0%
CTCGAAACCGACGGGACAGA+AGG - Chr3:5514933-5514952 MsG0380011803.01.T01:intron 60.0%
GTGAGAGCTCCTACTGCACC+TGG - Chr3:5516483-5516502 MsG0380011803.01.T01:CDS 60.0%
TTTCGCGCAAGCCAGGTCCA+AGG - Chr3:5512495-5512514 MsG0380011803.01.T01:CDS 60.0%
! TGGACCTGGCTTGCGCGAAA+CGG + Chr3:5512495-5512514 None:intergenic 60.0%
!! TCTGTCCCGTCGGTTTCGAG+TGG + Chr3:5514933-5514952 None:intergenic 60.0%
CTAACAACCGTGCCGCCTCC+AGG - Chr3:5514785-5514804 MsG0380011803.01.T01:intron 65.0%
CTTCCCGTTTCGCGCAAGCC+AGG - Chr3:5512488-5512507 MsG0380011803.01.T01:CDS 65.0%
! GGACCTGGCTTGCGCGAAAC+GGG + Chr3:5512494-5512513 None:intergenic 65.0%
CGCGCAAGCCAGGTCCAAGG+CGG - Chr3:5512498-5512517 MsG0380011803.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 5512408 5516563 5512408 ID=MsG0380011803.01;Name=MsG0380011803.01
Chr3 mRNA 5512408 5516563 5512408 ID=MsG0380011803.01.T01;Parent=MsG0380011803.01;Name=MsG0380011803.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|0.66|1|1|3|0|281
Chr3 exon 5516452 5516563 5516452 ID=MsG0380011803.01.T01:exon:2449;Parent=MsG0380011803.01.T01
Chr3 exon 5512716 5513288 5512716 ID=MsG0380011803.01.T01:exon:2448;Parent=MsG0380011803.01.T01
Chr3 exon 5512408 5512568 5512408 ID=MsG0380011803.01.T01:exon:2447;Parent=MsG0380011803.01.T01
Chr3 CDS 5516452 5516563 5516452 ID=MsG0380011803.01.T01:cds;Parent=MsG0380011803.01.T01
Chr3 CDS 5512716 5513288 5512716 ID=MsG0380011803.01.T01:cds;Parent=MsG0380011803.01.T01
Chr3 CDS 5512408 5512568 5512408 ID=MsG0380011803.01.T01:cds;Parent=MsG0380011803.01.T01
Gene Sequence

>MsG0380011803.01.T01

ATGGTATCTCGCTTACGCGTTGTAACTCGCTTACGCGAGATCAATGCCGAGAGCAAAAAGAATCTCGCTTTTTTTCATCGCTTCCCGTTTCGCGCAAGCCAGGTCCAAGGCGTTCATGTTCTTGACCTCCTCATAAGAGATTACACATTCAAGTCATTAGACAAAGATTTCAAGACAGGAATACCACAATCAGTGAAGCTACCTTCAAATTTATCAGGCATCAAAGTAGATACTGTGAGATTTAGATGTGGAAGTTTAACAAGGTATGGTGCAAAATTAAAGGAGTTTCATCTTGGTATTGGTGTTTCTATTCATCCATGTATTGAAAGAGTAATGTTGATAAGACAAAGCATAGAGTATAATAATAATTGGTCTTCAATATATTATGCAAACTATATTGATCTATCTAAGTATCAACTTGTTTCTCCAATTGTTGGAATTTTAGCTTATAATGCTGATGAAGATTCAAACTCTAGTAGTAATCCTTTTCAACTTGGAATTGAAGCTGGTGAAAAACTCATCACAATTGATTTCAACAATGCTACAAATTTCAACAACCAAGAAGAAAAAGGTATCAAAGTGAAACCATTATGTGCAAGTTTTGAAGGAAATGGAAAAATGACACTTGCAATAACAAAACCTTTAGCAACAAATGTTTGTGTTGCTAAAACACATGGACATTTTGGGTTAAGAAAGGTCAAGAATGGTTCAGATGGAAGAAGAGCTTATGAAGAAGAAGCACTTCAGGTTTCAATGGTTGGACATGTGAGAGCTCCTACTGCACCTGGAACTAGAACAACACCAACACTTGAGCAACATGACTATATAACTCGACATCCTCGTTGA
Protein sequence

>MsG0380011803.01.T01

MVSRLRVVTRLREINAESKKNLAFFHRFPFRASQVQGVHVLDLLIRDYTFKSLDKDFKTGIPQSVKLPSNLSGIKVDTVRFRCGSLTRYGAKLKEFHLGIGVSIHPCIERVMLIRQSIEYNNNWSSIYYANYIDLSKYQLVSPIVGILAYNADEDSNSSSNPFQLGIEAGEKLITIDFNNATNFNNQEEKGIKVKPLCASFEGNGKMTLAITKPLATNVCVAKTHGHFGLRKVKNGSDGRRAYEEEALQVSMVGHVRAPTAPGTRTTPTLEQHDYITRHPR*