Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380012217.01.T01 | RHN65795.1 | 80.051 | 396 | 72 | 2 | 80 | 468 | 46 | 441 | 0 | 624 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380012217.01.T01 | Q9S7T8 | 51.546 | 388 | 177 | 4 | 90 | 466 | 3 | 390 | 3.56E-136 | 400 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380012217.01.T01 | A0A396IPH6 | 80.051 | 396 | 72 | 2 | 80 | 468 | 46 | 441 | 0.0 | 624 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180002327.01 | MsG0380012217.01 | 0.843469 | 1.374686e-58 | 2.152952e-55 |
MsG0180002328.01 | MsG0380012217.01 | 0.840595 | 7.909295e-58 | 1.132060e-54 |
MsG0380012215.01 | MsG0380012217.01 | 0.818492 | 1.905901e-52 | 1.428779e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380012217.01.T01 | MTR_3g018740 | 81.347 | 386 | 65 | 2 | 90 | 468 | 3 | 388 | 0.0 | 616 |
MsG0380012217.01.T01 | MTR_3g101010 | 72.021 | 386 | 98 | 3 | 90 | 466 | 3 | 387 | 0.0 | 528 |
MsG0380012217.01.T01 | MTR_8g027395 | 65.570 | 395 | 127 | 5 | 79 | 466 | 3 | 395 | 3.20e-174 | 494 |
MsG0380012217.01.T01 | MTR_2g045980 | 66.667 | 390 | 115 | 5 | 90 | 468 | 3 | 388 | 1.10e-173 | 493 |
MsG0380012217.01.T01 | MTR_4g045707 | 65.796 | 383 | 123 | 3 | 91 | 466 | 5 | 386 | 1.32e-173 | 493 |
MsG0380012217.01.T01 | MTR_2g046030 | 65.641 | 390 | 119 | 5 | 90 | 468 | 3 | 388 | 3.69e-172 | 489 |
MsG0380012217.01.T01 | MTR_8g027420 | 65.796 | 383 | 112 | 5 | 90 | 466 | 4 | 373 | 9.05e-168 | 477 |
MsG0380012217.01.T01 | MTR_3g101030 | 62.720 | 397 | 118 | 4 | 97 | 466 | 34 | 427 | 2.54e-167 | 478 |
MsG0380012217.01.T01 | MTR_3g101180 | 62.944 | 394 | 126 | 5 | 92 | 466 | 6 | 398 | 1.28e-166 | 475 |
MsG0380012217.01.T01 | MTR_8g461160 | 64.103 | 390 | 126 | 5 | 92 | 468 | 6 | 394 | 5.69e-165 | 471 |
MsG0380012217.01.T01 | MTR_3g048000 | 62.205 | 381 | 119 | 5 | 93 | 466 | 28 | 390 | 6.31e-163 | 466 |
MsG0380012217.01.T01 | MTR_7g451890 | 58.396 | 399 | 152 | 4 | 82 | 467 | 4 | 401 | 1.51e-160 | 460 |
MsG0380012217.01.T01 | MTR_4g088525 | 64.444 | 360 | 122 | 3 | 112 | 466 | 9 | 367 | 7.25e-159 | 454 |
MsG0380012217.01.T01 | MTR_7g050810 | 58.750 | 400 | 148 | 5 | 84 | 467 | 5 | 403 | 1.58e-158 | 455 |
MsG0380012217.01.T01 | MTR_7g047780 | 59.148 | 399 | 149 | 5 | 82 | 467 | 4 | 401 | 1.83e-157 | 452 |
MsG0380012217.01.T01 | MTR_3g101130 | 60.567 | 388 | 136 | 6 | 91 | 466 | 5 | 387 | 2.47e-155 | 446 |
MsG0380012217.01.T01 | MTR_7g050750 | 58.270 | 393 | 150 | 4 | 88 | 467 | 4 | 395 | 1.21e-154 | 445 |
MsG0380012217.01.T01 | MTR_4g088535 | 64.021 | 378 | 112 | 6 | 92 | 463 | 7 | 366 | 1.69e-154 | 444 |
MsG0380012217.01.T01 | MTR_3g101050 | 63.588 | 379 | 117 | 7 | 95 | 466 | 32 | 396 | 1.29e-148 | 429 |
MsG0380012217.01.T01 | MTR_3g015620 | 58.663 | 404 | 126 | 6 | 77 | 467 | 4 | 379 | 4.08e-147 | 425 |
MsG0380012217.01.T01 | MTR_3g102920 | 54.146 | 410 | 126 | 9 | 83 | 466 | 35 | 408 | 8.96e-130 | 382 |
MsG0380012217.01.T01 | MTR_3g101190 | 55.381 | 381 | 93 | 7 | 90 | 466 | 3 | 310 | 8.41e-128 | 373 |
MsG0380012217.01.T01 | MTR_3g018747 | 72.441 | 254 | 52 | 2 | 219 | 468 | 16 | 255 | 1.78e-121 | 355 |
MsG0380012217.01.T01 | MTR_3g101200 | 50.254 | 394 | 159 | 6 | 84 | 466 | 23 | 390 | 4.86e-113 | 338 |
MsG0380012217.01.T01 | MTR_3g100995 | 65.217 | 253 | 81 | 2 | 219 | 467 | 14 | 263 | 1.20e-110 | 328 |
MsG0380012217.01.T01 | MTR_3g100010 | 55.769 | 312 | 86 | 2 | 115 | 389 | 40 | 336 | 4.47e-106 | 319 |
MsG0380012217.01.T01 | MTR_7g050830 | 51.235 | 324 | 121 | 4 | 82 | 379 | 6 | 318 | 7.03e-105 | 315 |
MsG0380012217.01.T01 | MTR_3g015760 | 62.353 | 255 | 86 | 3 | 219 | 467 | 30 | 280 | 1.60e-96 | 292 |
MsG0380012217.01.T01 | MTR_3g111160 | 67.727 | 220 | 63 | 3 | 253 | 466 | 1 | 218 | 1.65e-92 | 280 |
MsG0380012217.01.T01 | MTR_3g100520 | 63.426 | 216 | 68 | 3 | 253 | 466 | 1 | 207 | 3.67e-84 | 258 |
MsG0380012217.01.T01 | MTR_3g114310 | 41.221 | 393 | 206 | 12 | 93 | 465 | 20 | 407 | 5.65e-80 | 254 |
MsG0380012217.01.T01 | MTR_2g046410 | 64.251 | 207 | 66 | 3 | 269 | 468 | 144 | 349 | 1.27e-79 | 251 |
MsG0380012217.01.T01 | MTR_3g101110 | 53.696 | 257 | 83 | 4 | 196 | 442 | 50 | 280 | 4.05e-77 | 243 |
MsG0380012217.01.T01 | MTR_3g099970 | 60.000 | 190 | 58 | 2 | 219 | 408 | 27 | 198 | 4.50e-68 | 216 |
MsG0380012217.01.T01 | MTR_3g111150 | 59.322 | 177 | 44 | 3 | 94 | 266 | 1 | 153 | 7.62e-61 | 196 |
MsG0380012217.01.T01 | MTR_3g101150 | 64.557 | 158 | 46 | 2 | 318 | 466 | 1 | 157 | 1.18e-60 | 196 |
MsG0380012217.01.T01 | MTR_3g102870 | 59.509 | 163 | 60 | 2 | 277 | 434 | 3 | 164 | 2.45e-56 | 185 |
MsG0380012217.01.T01 | MTR_3g101020 | 54.839 | 186 | 53 | 2 | 286 | 467 | 1 | 159 | 2.99e-55 | 181 |
MsG0380012217.01.T01 | MTR_3g100990 | 63.576 | 151 | 50 | 2 | 91 | 237 | 4 | 153 | 1.19e-53 | 187 |
MsG0380012217.01.T01 | MTR_4g093550 | 67.045 | 88 | 29 | 0 | 88 | 175 | 2 | 89 | 6.37e-32 | 117 |
MsG0380012217.01.T01 | MTR_6g046890 | 75.806 | 62 | 15 | 0 | 111 | 172 | 18 | 79 | 1.17e-24 | 99.4 |
MsG0380012217.01.T01 | MTR_3g101140 | 61.194 | 67 | 20 | 1 | 406 | 466 | 48 | 114 | 1.62e-16 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380012217.01.T01 | AT1G47710 | 51.546 | 388 | 177 | 4 | 90 | 466 | 3 | 390 | 3.63e-137 | 400 |
MsG0380012217.01.T01 | AT1G47710 | 51.546 | 388 | 177 | 4 | 90 | 466 | 30 | 417 | 2.15e-136 | 399 |
MsG0380012217.01.T01 | AT3G45220 | 48.593 | 391 | 183 | 8 | 90 | 465 | 3 | 390 | 1.19e-119 | 355 |
MsG0380012217.01.T01 | AT2G25240 | 49.482 | 386 | 179 | 7 | 90 | 465 | 3 | 382 | 5.70e-117 | 348 |
MsG0380012217.01.T01 | AT2G26390 | 47.970 | 394 | 177 | 8 | 90 | 465 | 3 | 386 | 3.01e-114 | 342 |
MsG0380012217.01.T01 | AT2G14540 | 41.562 | 397 | 195 | 8 | 83 | 465 | 24 | 397 | 9.19e-91 | 282 |
MsG0380012217.01.T01 | AT1G64030 | 41.688 | 391 | 191 | 7 | 90 | 465 | 3 | 371 | 5.88e-89 | 276 |
MsG0380012217.01.T01 | AT1G62170 | 40.103 | 389 | 195 | 7 | 92 | 465 | 66 | 431 | 9.20e-89 | 278 |
MsG0380012217.01.T01 | AT2G35580 | 41.432 | 391 | 178 | 10 | 90 | 465 | 17 | 371 | 1.98e-85 | 267 |
MsG0380012217.01.T01 | AT1G62170 | 36.967 | 422 | 195 | 7 | 92 | 465 | 66 | 464 | 2.14e-83 | 265 |
MsG0380012217.01.T01 | AT1G64010 | 46.083 | 217 | 91 | 4 | 253 | 465 | 1 | 195 | 6.74e-55 | 182 |
MsG0380012217.01.T01 | AT1G64010 | 44.554 | 202 | 86 | 4 | 268 | 465 | 2 | 181 | 1.12e-46 | 160 |
MsG0380012217.01.T01 | AT1G62160 | 38.068 | 176 | 88 | 5 | 292 | 465 | 62 | 218 | 7.03e-29 | 113 |
MsG0380012217.01.T01 | AT1G63280 | 49.074 | 108 | 51 | 2 | 219 | 324 | 15 | 120 | 1.31e-24 | 99.0 |
MsG0380012217.01.T01 | AT1G51330 | 50.962 | 104 | 46 | 2 | 219 | 318 | 38 | 140 | 7.80e-23 | 96.3 |
MsG0380012217.01.T01 | AT1G64020 | 34.821 | 112 | 70 | 3 | 97 | 206 | 10 | 120 | 2.10e-14 | 70.1 |
Find 96 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTAATGCACTCTACTTTAA+AGG | 0.124495 | 3:+12864538 | MsG0380012217.01.T01:CDS |
CTTGCCTTCTGTCTTTAAAT+AGG | 0.176010 | 3:-12863440 | None:intergenic |
TTGCCTTCTGTCTTTAAATA+GGG | 0.247748 | 3:-12863439 | None:intergenic |
GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 3:-12864480 | None:intergenic |
TCCAGTTGATCTTCAGCTTC+TGG | 0.294326 | 3:-12862577 | None:intergenic |
GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 3:-12863872 | None:intergenic |
CCTCGACTCTCCTTCGTAAA+TGG | 0.330631 | 3:+12863793 | MsG0380012217.01.T01:CDS |
AACAGTCCGTCTTTGGCATT+TGG | 0.339966 | 3:-12864757 | None:intergenic |
ATCTTCAGCTTCTGGTGAAA+TGG | 0.346704 | 3:-12862569 | None:intergenic |
GTTGATTCATCTACTGATCT+TGG | 0.347636 | 3:-12864502 | None:intergenic |
CAATGCTAACAGTCCGTCTT+TGG | 0.349879 | 3:-12864764 | None:intergenic |
ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 3:+12865147 | MsG0380012217.01.T01:CDS |
GTTGAGATGATCTGTGGATT+TGG | 0.358590 | 3:-12863713 | None:intergenic |
GAAGTGAAGAAGTGAATTTA+TGG | 0.362397 | 3:+12864437 | MsG0380012217.01.T01:intron |
AGGATTCAAGAGTTGTTTCA+TGG | 0.367409 | 3:+12862613 | MsG0380012217.01.T01:CDS |
TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 3:-12863834 | None:intergenic |
CTTCGTCTTCTTTATAAGAA+AGG | 0.383719 | 3:+12864697 | MsG0380012217.01.T01:CDS |
AAAGAAGAACAACGATTCTT+CGG | 0.387616 | 3:+12863518 | MsG0380012217.01.T01:CDS |
ACCAGAAGCTGAAGATCAAC+TGG | 0.394117 | 3:+12862576 | MsG0380012217.01.T01:CDS |
TCTCCTTCGTAAATGGTGTA+TGG | 0.396928 | 3:+12863800 | MsG0380012217.01.T01:CDS |
TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 3:+12864901 | MsG0380012217.01.T01:CDS |
TCATGTACTTCTACTTTAGC+AGG | 0.415176 | 3:-12864835 | None:intergenic |
TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 3:-12863555 | None:intergenic |
AACTGGATTTGCAATATTCA+AGG | 0.419891 | 3:+12862593 | MsG0380012217.01.T01:CDS |
TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 3:+12864894 | MsG0380012217.01.T01:CDS |
TTCTGTCGAGAACAGATGTT+TGG | 0.430392 | 3:-12863581 | None:intergenic |
CTCTCGGATGCTGCTCCCAC+AGG | 0.433983 | 3:+12863766 | MsG0380012217.01.T01:CDS |
AAGAAGAACAACGATTCTTC+GGG | 0.443253 | 3:+12863519 | MsG0380012217.01.T01:CDS |
GCTTGTTTCTGTCGTGCTCT+CGG | 0.446945 | 3:+12863750 | MsG0380012217.01.T01:CDS |
GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 3:-12863833 | None:intergenic |
CAATGATACTTAGCACAACT+TGG | 0.455852 | 3:-12863639 | None:intergenic |
TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 3:+12865021 | MsG0380012217.01.T01:CDS |
CTCTGTTGATTTCATGACCA+AGG | 0.457766 | 3:+12863894 | MsG0380012217.01.T01:CDS |
TGGTGAAATGGCTTCTGATA+AGG | 0.459162 | 3:-12862557 | None:intergenic |
GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 3:+12864777 | MsG0380012217.01.T01:CDS |
GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 3:+12865048 | MsG0380012217.01.T01:CDS |
GACTCTTCTCTTGTGAGTGA+TGG | 0.470067 | 3:+12864967 | MsG0380012217.01.T01:CDS |
AGACGGACTGTTAGCATTGG+TGG | 0.477068 | 3:+12864768 | MsG0380012217.01.T01:CDS |
AAAGGACATCAGAAGATTAG+TGG | 0.477461 | 3:+12862649 | MsG0380012217.01.T01:CDS |
GCACAAAATACGATTGCAAA+AGG | 0.477559 | 3:+12863482 | MsG0380012217.01.T01:CDS |
TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 3:-12865117 | None:intergenic |
CTCCTTCGTAAATGGTGTAT+GGG | 0.487373 | 3:+12863801 | MsG0380012217.01.T01:CDS |
AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 3:-12864808 | None:intergenic |
AAAATACGATTGCAAAAGGA+TGG | 0.495819 | 3:+12863486 | MsG0380012217.01.T01:CDS |
TGCCTTCTGTCTTTAAATAG+GGG | 0.500069 | 3:-12863438 | None:intergenic |
CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 3:+12865129 | MsG0380012217.01.T01:CDS |
CACTCTACTTTAAAGGAGCA+TGG | 0.514338 | 3:+12864545 | MsG0380012217.01.T01:CDS |
CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 3:-12865116 | None:intergenic |
TGCTAAGATCATTGATCAAG+AGG | 0.517318 | 3:-12865183 | None:intergenic |
GTGCTAAGTATCATTGCTGC+TGG | 0.522173 | 3:+12863646 | MsG0380012217.01.T01:CDS |
CATCCCCTCAGTAGTCATGA+AGG | 0.522274 | 3:-12864641 | None:intergenic |
GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 3:-12864934 | None:intergenic |
AAGTGAAGAAGTGAATTTAT+GGG | 0.526526 | 3:+12864438 | MsG0380012217.01.T01:intron |
CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 3:-12865154 | None:intergenic |
TCTGAATGGCAGCTCGGTCA+AGG | 0.533918 | 3:+12864615 | MsG0380012217.01.T01:CDS |
GATTTCATGACCAAGGTTTG+TGG | 0.538661 | 3:+12863901 | MsG0380012217.01.T01:CDS |
TCGGATGCTGCTCCCACAGG+TGG | 0.539122 | 3:+12863769 | MsG0380012217.01.T01:CDS |
TATCATTGCTGCTGGTTGTG+AGG | 0.540874 | 3:+12863654 | MsG0380012217.01.T01:CDS |
ATCATTGCTGCTGGTTGTGA+GGG | 0.541244 | 3:+12863655 | MsG0380012217.01.T01:CDS |
AACCCCTATTTAAAGACAGA+AGG | 0.541317 | 3:+12863436 | MsG0380012217.01.T01:CDS |
GAAATATATTAGAAACAGAA+AGG | 0.558448 | 3:-12864990 | None:intergenic |
TCACCTTCTGAATGGCAGCT+CGG | 0.561657 | 3:+12864609 | MsG0380012217.01.T01:CDS |
TTTCTTCCAAATGCCAAAGA+CGG | 0.563068 | 3:+12864751 | MsG0380012217.01.T01:CDS |
GATTCATCTACTGATCTTGG+AGG | 0.568404 | 3:-12864499 | None:intergenic |
GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 3:-12863551 | None:intergenic |
CATGGATCGAAATTCATCAA+AGG | 0.570271 | 3:+12862631 | MsG0380012217.01.T01:CDS |
AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 3:+12863553 | MsG0380012217.01.T01:CDS |
GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 3:-12863680 | None:intergenic |
GAGATATGTACCACAAACCT+TGG | 0.589930 | 3:-12863911 | None:intergenic |
TGCATTAGTAAAGATGAGCC+TGG | 0.591361 | 3:-12864524 | None:intergenic |
AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 3:+12863558 | MsG0380012217.01.T01:CDS |
CAAAGACGGACTGTTAGCAT+TGG | 0.595410 | 3:+12864765 | MsG0380012217.01.T01:CDS |
ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 3:-12863570 | None:intergenic |
TGACCGAGCTGCCATTCAGA+AGG | 0.601435 | 3:-12864612 | None:intergenic |
CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 3:-12863569 | None:intergenic |
TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 3:-12863679 | None:intergenic |
AAATACGATTGCAAAAGGAT+GGG | 0.614356 | 3:+12863487 | MsG0380012217.01.T01:CDS |
TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 3:+12864906 | MsG0380012217.01.T01:CDS |
GTTCCCTTCATGACTACTGA+GGG | 0.617001 | 3:+12864637 | MsG0380012217.01.T01:CDS |
AGCACAACTTGGATTGACAA+TGG | 0.620415 | 3:-12863628 | None:intergenic |
CGTAGCTTCTGATGATGACA+TGG | 0.621247 | 3:-12862521 | None:intergenic |
GAGAGTCGAGGTCCACCTGT+GGG | 0.635303 | 3:-12863781 | None:intergenic |
TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 3:-12865113 | None:intergenic |
TTTAAAGACAGAAGGCAAGA+CGG | 0.641992 | 3:+12863444 | MsG0380012217.01.T01:CDS |
ATCCCCTCAGTAGTCATGAA+GGG | 0.642828 | 3:-12864640 | None:intergenic |
GGAGAGTCGAGGTCCACCTG+TGG | 0.645915 | 3:-12863782 | None:intergenic |
AGATTAGTGGAACTTTGCAA+CGG | 0.650476 | 3:+12862662 | MsG0380012217.01.T01:CDS |
AACCCATACACCATTTACGA+AGG | 0.656132 | 3:-12863803 | None:intergenic |
GAGATAGTTGAGATGATCTG+TGG | 0.676063 | 3:-12863719 | None:intergenic |
GGTTCCCTTCATGACTACTG+AGG | 0.679001 | 3:+12864636 | MsG0380012217.01.T01:CDS |
GATCTGTGGATTTGGACTCG+AGG | 0.679726 | 3:-12863705 | None:intergenic |
CACGACAGAAACAAGCTGAG+AGG | 0.687540 | 3:-12863743 | None:intergenic |
GATCAGTAGATGAATCAACC+AGG | 0.703083 | 3:+12864506 | MsG0380012217.01.T01:CDS |
TTCCCTTCATGACTACTGAG+GGG | 0.715192 | 3:+12864638 | MsG0380012217.01.T01:CDS |
CCATTTACGAAGGAGAGTCG+AGG | 0.724675 | 3:-12863793 | None:intergenic |
CTTGGTCATGAAATCAACAG+AGG | 0.726746 | 3:-12863893 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTTCATGTTAATTAATTAA+AGG | + | Chr3:12864000-12864019 | MsG0380012217.01.T01:intron | 10.0% |
!! | GGTTTATTAAAAAAAAAAAA+AGG | - | Chr3:12862991-12863010 | None:intergenic | 10.0% |
!! | TTTCATGTTAATTAATTAAA+GGG | + | Chr3:12864001-12864020 | MsG0380012217.01.T01:intron | 10.0% |
!!! | ATTTGTTTTTATTTTATTTG+AGG | - | Chr3:12863970-12863989 | None:intergenic | 10.0% |
!!! | TAAAACTAATTCATATTTTA+AGG | + | Chr3:12863374-12863393 | MsG0380012217.01.T01:intron | 10.0% |
!!! | TATTATATTTGTTATATTGT+TGG | + | Chr3:12863080-12863099 | MsG0380012217.01.T01:intron | 10.0% |
!!! | TTTGTTTTTATTTTATTTGA+GGG | - | Chr3:12863969-12863988 | None:intergenic | 10.0% |
!!! | AAAAAAAAAAGGTATTCTTA+TGG | - | Chr3:12862980-12862999 | None:intergenic | 15.0% |
!!! | ATTCAAATAACTGATTTTTA+TGG | + | Chr3:12864400-12864419 | MsG0380012217.01.T01:intron | 15.0% |
!! | CCTACAAAATAATATTCTTA+TGG | - | Chr3:12863012-12863031 | None:intergenic | 20.0% |
!! | GAAATATATTAGAAACAGAA+AGG | - | Chr3:12864993-12865012 | None:intergenic | 20.0% |
!! | TATTACGTTACTAAATTAGT+TGG | - | Chr3:12864312-12864331 | None:intergenic | 20.0% |
!!! | CCATAAGAATATTATTTTGT+AGG | + | Chr3:12863009-12863028 | MsG0380012217.01.T01:intron | 20.0% |
!!! | TCATATGAAATTTTGAATCT+TGG | - | Chr3:12864871-12864890 | None:intergenic | 20.0% |
! | AAGTGAAGAAGTGAATTTAT+GGG | + | Chr3:12864438-12864457 | MsG0380012217.01.T01:intron | 25.0% |
! | CTCTAATCAGAAATAAGAAA+GGG | - | Chr3:12865119-12865138 | None:intergenic | 25.0% |
! | GGACAAAGTAGATTTATAAT+TGG | - | Chr3:12863875-12863894 | None:intergenic | 25.0% |
! | TCTCTAATCAGAAATAAGAA+AGG | - | Chr3:12865120-12865139 | None:intergenic | 25.0% |
! | TTCATTGAAGTAAATGAAGA+AGG | + | Chr3:12865021-12865040 | MsG0380012217.01.T01:CDS | 25.0% |
! | TTCTTTAATCAGTGTAGAAT+TGG | - | Chr3:12864175-12864194 | None:intergenic | 25.0% |
!! | ATTAGGAATGGATTTCAAAT+TGG | + | Chr3:12862856-12862875 | MsG0380012217.01.T01:intron | 25.0% |
!! | ATTTCAAATTGGTTCTTCAT+AGG | + | Chr3:12862867-12862886 | MsG0380012217.01.T01:intron | 25.0% |
!!! | TTTTTAAGCGTATAACTAGA+AGG | - | Chr3:12862952-12862971 | None:intergenic | 25.0% |
AAAATACGATTGCAAAAGGA+TGG | + | Chr3:12863486-12863505 | MsG0380012217.01.T01:CDS | 30.0% | |
AAAGAAGAACAACGATTCTT+CGG | + | Chr3:12863518-12863537 | MsG0380012217.01.T01:CDS | 30.0% | |
AAATACGATTGCAAAAGGAT+GGG | + | Chr3:12863487-12863506 | MsG0380012217.01.T01:CDS | 30.0% | |
AACTGGATTTGCAATATTCA+AGG | + | Chr3:12862593-12862612 | MsG0380012217.01.T01:CDS | 30.0% | |
AAGAAAACATCTCCAGAATA+CGG | + | Chr3:12862807-12862826 | MsG0380012217.01.T01:intron | 30.0% | |
ACAGATTGCTGTGAAAAAAA+GGG | - | Chr3:12863936-12863955 | None:intergenic | 30.0% | |
ACTAATGCACTCTACTTTAA+AGG | + | Chr3:12864538-12864557 | MsG0380012217.01.T01:CDS | 30.0% | |
CAAATCAGACAAAAGATCAT+TGG | + | Chr3:12862898-12862917 | MsG0380012217.01.T01:intron | 30.0% | |
CCAACTAACCAGAAAATTTA+GGG | - | Chr3:12864055-12864074 | None:intergenic | 30.0% | |
CTTCGTCTTCTTTATAAGAA+AGG | + | Chr3:12864697-12864716 | MsG0380012217.01.T01:CDS | 30.0% | |
GAAGTGAAGAAGTGAATTTA+TGG | + | Chr3:12864437-12864456 | MsG0380012217.01.T01:intron | 30.0% | |
GAGGAAGAAGTTCTTTAATA+AGG | - | Chr3:12864483-12864502 | None:intergenic | 30.0% | |
GATAGTAAAGTTCATGACTT+TGG | + | Chr3:12864143-12864162 | MsG0380012217.01.T01:intron | 30.0% | |
GGATGCTAGAAAACAATAAA+GGG | - | Chr3:12864291-12864310 | None:intergenic | 30.0% | |
TAATAGCATCTGATTTCTTG+CGG | + | Chr3:12863400-12863419 | MsG0380012217.01.T01:intron | 30.0% | |
TAATCAGAAATAAGAAAGGG+TGG | - | Chr3:12865116-12865135 | None:intergenic | 30.0% | |
TCCAACTAACCAGAAAATTT+AGG | - | Chr3:12864056-12864075 | None:intergenic | 30.0% | |
TGAAACTTCTCATATGTTGA+AGG | + | Chr3:12864894-12864913 | MsG0380012217.01.T01:CDS | 30.0% | |
TGACGAAACACTTTGTTAAA+TGG | + | Chr3:12864214-12864233 | MsG0380012217.01.T01:intron | 30.0% | |
TGGATGCTAGAAAACAATAA+AGG | - | Chr3:12864292-12864311 | None:intergenic | 30.0% | |
TTGCCTTCTGTCTTTAAATA+GGG | - | Chr3:12863442-12863461 | None:intergenic | 30.0% | |
! | ACTTTATTTCAGCACAAAGT+AGG | + | Chr3:12864100-12864119 | MsG0380012217.01.T01:intron | 30.0% |
! | CAATGATCTTTTGTCTGATT+TGG | - | Chr3:12862900-12862919 | None:intergenic | 30.0% |
! | CAGAAAATTTAGGGTATACT+AGG | - | Chr3:12864046-12864065 | None:intergenic | 30.0% |
! | CTAGTATACCCTAAATTTTC+TGG | + | Chr3:12864044-12864063 | MsG0380012217.01.T01:intron | 30.0% |
! | CTGAAATAAAGTAGAAGCAT+TGG | - | Chr3:12864092-12864111 | None:intergenic | 30.0% |
! | CTTTATTTCAGCACAAAGTA+GGG | + | Chr3:12864101-12864120 | MsG0380012217.01.T01:intron | 30.0% |
! | TATGATTTTCACCTTCTGAA+TGG | + | Chr3:12864601-12864620 | MsG0380012217.01.T01:CDS | 30.0% |
!!! | ATTTTTTGACAATGACACCT+AGG | - | Chr3:12863310-12863329 | None:intergenic | 30.0% |
!!! | GTCTTTTCAAAGGTGTTTTA+AGG | + | Chr3:12862684-12862703 | MsG0380012217.01.T01:intron | 30.0% |
AAAGGACATCAGAAGATTAG+TGG | + | Chr3:12862649-12862668 | MsG0380012217.01.T01:CDS | 35.0% | |
AACCAAACAAATGTTTCCCT+CGG | + | Chr3:12863553-12863572 | MsG0380012217.01.T01:CDS | 35.0% | |
AACCCCTATTTAAAGACAGA+AGG | + | Chr3:12863436-12863455 | MsG0380012217.01.T01:CDS | 35.0% | |
AAGAAGAACAACGATTCTTC+GGG | + | Chr3:12863519-12863538 | MsG0380012217.01.T01:CDS | 35.0% | |
AGACTATAGTGTAGTAAGTC+AGG | - | Chr3:12864811-12864830 | None:intergenic | 35.0% | |
AGATTAGTGGAACTTTGCAA+CGG | + | Chr3:12862662-12862681 | MsG0380012217.01.T01:CDS | 35.0% | |
CAAAGATGTTCCTTTGGATT+AGG | + | Chr3:12862839-12862858 | MsG0380012217.01.T01:intron | 35.0% | |
CAATGATACTTAGCACAACT+TGG | - | Chr3:12863642-12863661 | None:intergenic | 35.0% | |
CATGGATCGAAATTCATCAA+AGG | + | Chr3:12862631-12862650 | MsG0380012217.01.T01:CDS | 35.0% | |
CTTGCCTTCTGTCTTTAAAT+AGG | - | Chr3:12863443-12863462 | None:intergenic | 35.0% | |
GAAATCCATTCCTAATCCAA+AGG | - | Chr3:12862852-12862871 | None:intergenic | 35.0% | |
GACAGATTGCTGTGAAAAAA+AGG | - | Chr3:12863937-12863956 | None:intergenic | 35.0% | |
GCACAAAATACGATTGCAAA+AGG | + | Chr3:12863482-12863501 | MsG0380012217.01.T01:CDS | 35.0% | |
TCATGTACTTCTACTTTAGC+AGG | - | Chr3:12864838-12864857 | None:intergenic | 35.0% | |
TCTCATATGTTGAAGGAGTT+AGG | + | Chr3:12864901-12864920 | MsG0380012217.01.T01:CDS | 35.0% | |
TGCCTTCTGTCTTTAAATAG+GGG | - | Chr3:12863441-12863460 | None:intergenic | 35.0% | |
TGCTAGAAAACAATAAAGGG+AGG | - | Chr3:12864288-12864307 | None:intergenic | 35.0% | |
TTTAAAGACAGAAGGCAAGA+CGG | + | Chr3:12863444-12863463 | MsG0380012217.01.T01:CDS | 35.0% | |
TTTCTTCCAAATGCCAAAGA+CGG | + | Chr3:12864751-12864770 | MsG0380012217.01.T01:CDS | 35.0% | |
! | AGGATTCAAGAGTTGTTTCA+TGG | + | Chr3:12862613-12862632 | MsG0380012217.01.T01:CDS | 35.0% |
! | ATGTTCCTTTGGATTAGGAA+TGG | + | Chr3:12862844-12862863 | MsG0380012217.01.T01:intron | 35.0% |
! | GGAAGACAAGATTCTTTTGA+AGG | - | Chr3:12863854-12863873 | None:intergenic | 35.0% |
! | GTTGATTCATCTACTGATCT+TGG | - | Chr3:12864505-12864524 | None:intergenic | 35.0% |
! | TAACAAAGTGTTTCGTCACA+TGG | - | Chr3:12864212-12864231 | None:intergenic | 35.0% |
!! | GACAAGATTCTTTTGAAGGA+AGG | - | Chr3:12863850-12863869 | None:intergenic | 35.0% |
!! | GCTAGTTCTAATAAAAGCCT+AGG | + | Chr3:12863290-12863309 | MsG0380012217.01.T01:intron | 35.0% |
!!! | CCCTAAATTTTCTGGTTAGT+TGG | + | Chr3:12864052-12864071 | MsG0380012217.01.T01:intron | 35.0% |
AACCCATACACCATTTACGA+AGG | - | Chr3:12863806-12863825 | None:intergenic | 40.0% | |
ACTGGAACCATTCTCTTTGT+TGG | + | Chr3:12865147-12865166 | MsG0380012217.01.T01:CDS | 40.0% | |
AGCACAACTTGGATTGACAA+TGG | - | Chr3:12863631-12863650 | None:intergenic | 40.0% | |
ATCCAAAGGAACATCTTTGC+AGG | - | Chr3:12862838-12862857 | None:intergenic | 40.0% | |
ATCTTCAGCTTCTGGTGAAA+TGG | - | Chr3:12862572-12862591 | None:intergenic | 40.0% | |
CACTTGTCCAACAAAGAGAA+TGG | - | Chr3:12865157-12865176 | None:intergenic | 40.0% | |
CTCCTTCGTAAATGGTGTAT+GGG | + | Chr3:12863801-12863820 | MsG0380012217.01.T01:CDS | 40.0% | |
CTGATTAGAGAAGATTCGAC+TGG | + | Chr3:12865129-12865148 | MsG0380012217.01.T01:CDS | 40.0% | |
CTTGGTCATGAAATCAACAG+AGG | - | Chr3:12863896-12863915 | None:intergenic | 40.0% | |
GAAAGATCAAGCTTCAACAG+AGG | + | Chr3:12862922-12862941 | MsG0380012217.01.T01:intron | 40.0% | |
GAAGGAAGGTTGAAGAGAAA+GGG | - | Chr3:12863836-12863855 | None:intergenic | 40.0% | |
GAGATAGTTGAGATGATCTG+TGG | - | Chr3:12863722-12863741 | None:intergenic | 40.0% | |
GAGATATGTACCACAAACCT+TGG | - | Chr3:12863914-12863933 | None:intergenic | 40.0% | |
GAGGGAAACATTTGTTTGGT+TGG | - | Chr3:12863554-12863573 | None:intergenic | 40.0% | |
GATCAGTAGATGAATCAACC+AGG | + | Chr3:12864506-12864525 | MsG0380012217.01.T01:CDS | 40.0% | |
GATTCATCTACTGATCTTGG+AGG | - | Chr3:12864502-12864521 | None:intergenic | 40.0% | |
GATTTCATGACCAAGGTTTG+TGG | + | Chr3:12863901-12863920 | MsG0380012217.01.T01:CDS | 40.0% | |
GTAGACACAAAACAGAGTAG+TGG | - | Chr3:12862777-12862796 | None:intergenic | 40.0% | |
GTTGAGATGATCTGTGGATT+TGG | - | Chr3:12863716-12863735 | None:intergenic | 40.0% | |
TAAGGCATGTGCTTGCAATT+TGG | + | Chr3:12862702-12862721 | MsG0380012217.01.T01:intron | 40.0% | |
TATGTTGAAGGAGTTAGGAG+TGG | + | Chr3:12864906-12864925 | MsG0380012217.01.T01:CDS | 40.0% | |
TCCTGGAGGTTTGACAAAAA+TGG | + | Chr3:12864942-12864961 | MsG0380012217.01.T01:CDS | 40.0% | |
TCTCCTTCGTAAATGGTGTA+TGG | + | Chr3:12863800-12863819 | MsG0380012217.01.T01:CDS | 40.0% | |
TGAAGGAAGGTTGAAGAGAA+AGG | - | Chr3:12863837-12863856 | None:intergenic | 40.0% | |
TGCATTAGTAAAGATGAGCC+TGG | - | Chr3:12864527-12864546 | None:intergenic | 40.0% | |
TGGAGGTTTGACAAAAATGG+TGG | + | Chr3:12864945-12864964 | MsG0380012217.01.T01:CDS | 40.0% | |
TGGGCTGAAAAAGAGATGAA+TGG | + | Chr3:12864457-12864476 | MsG0380012217.01.T01:CDS | 40.0% | |
TGGTGAAATGGCTTCTGATA+AGG | - | Chr3:12862560-12862579 | None:intergenic | 40.0% | |
TTCTGTCGAGAACAGATGTT+TGG | - | Chr3:12863584-12863603 | None:intergenic | 40.0% | |
! | ACAAAACAGAGTAGTGGAGA+AGG | - | Chr3:12862771-12862790 | None:intergenic | 40.0% |
! | CACTCTACTTTAAAGGAGCA+TGG | + | Chr3:12864545-12864564 | MsG0380012217.01.T01:CDS | 40.0% |
! | CTTTGCAACGGTCTTTTCAA+AGG | + | Chr3:12862674-12862693 | MsG0380012217.01.T01:intron | 40.0% |
!! | ACCATTTTTGTCAAACCTCC+AGG | - | Chr3:12864946-12864965 | None:intergenic | 40.0% |
!! | CTCTGTTGATTTCATGACCA+AGG | + | Chr3:12863894-12863913 | MsG0380012217.01.T01:CDS | 40.0% |
AACAAATGTTTCCCTCGGCA+TGG | + | Chr3:12863558-12863577 | MsG0380012217.01.T01:CDS | 45.0% | |
AACAGTCCGTCTTTGGCATT+TGG | - | Chr3:12864760-12864779 | None:intergenic | 45.0% | |
ACCAGAAGCTGAAGATCAAC+TGG | + | Chr3:12862576-12862595 | MsG0380012217.01.T01:CDS | 45.0% | |
ATCCCCTCAGTAGTCATGAA+GGG | - | Chr3:12864643-12864662 | None:intergenic | 45.0% | |
ATCTGATTTCTTGCGGCACA+AGG | + | Chr3:12863407-12863426 | MsG0380012217.01.T01:intron | 45.0% | |
CAATGCTAACAGTCCGTCTT+TGG | - | Chr3:12864767-12864786 | None:intergenic | 45.0% | |
GACTCTTCTCTTGTGAGTGA+TGG | + | Chr3:12864967-12864986 | MsG0380012217.01.T01:CDS | 45.0% | |
GTGCTAAGTATCATTGCTGC+TGG | + | Chr3:12863646-12863665 | MsG0380012217.01.T01:CDS | 45.0% | |
GTTCCCTTCATGACTACTGA+GGG | + | Chr3:12864637-12864656 | MsG0380012217.01.T01:CDS | 45.0% | |
TCCAGTTGATCTTCAGCTTC+TGG | - | Chr3:12862580-12862599 | None:intergenic | 45.0% | |
TCGAGAAGCTGTTGTTGTGT+GGG | - | Chr3:12863682-12863701 | None:intergenic | 45.0% | |
TGCCGAGGGAAACATTTGTT+TGG | - | Chr3:12863558-12863577 | None:intergenic | 45.0% | |
TTCCCTTCATGACTACTGAG+GGG | + | Chr3:12864638-12864657 | MsG0380012217.01.T01:CDS | 45.0% | |
! | ATCATTGCTGCTGGTTGTGA+GGG | + | Chr3:12863655-12863674 | MsG0380012217.01.T01:CDS | 45.0% |
! | CTGTTTTGTGTCTACGCTAC+AGG | + | Chr3:12862782-12862801 | MsG0380012217.01.T01:intron | 45.0% |
! | GTTTTACCTTTCACTCCTGG+AGG | + | Chr3:12864928-12864947 | MsG0380012217.01.T01:CDS | 45.0% |
! | TATCATTGCTGCTGGTTGTG+AGG | + | Chr3:12863654-12863673 | MsG0380012217.01.T01:CDS | 45.0% |
!! | CAAAGACGGACTGTTAGCAT+TGG | + | Chr3:12864765-12864784 | MsG0380012217.01.T01:CDS | 45.0% |
!! | GTGGTTTTACCTTTCACTCC+TGG | + | Chr3:12864925-12864944 | MsG0380012217.01.T01:CDS | 45.0% |
!! | GTTAGCATTGGTGGAGAAGT+TGG | + | Chr3:12864777-12864796 | MsG0380012217.01.T01:CDS | 45.0% |
CACGACAGAAACAAGCTGAG+AGG | - | Chr3:12863746-12863765 | None:intergenic | 50.0% | |
CATCCCCTCAGTAGTCATGA+AGG | - | Chr3:12864644-12864663 | None:intergenic | 50.0% | |
CCATTTACGAAGGAGAGTCG+AGG | - | Chr3:12863796-12863815 | None:intergenic | 50.0% | |
CCTCGACTCTCCTTCGTAAA+TGG | + | Chr3:12863793-12863812 | MsG0380012217.01.T01:CDS | 50.0% | |
CGCCTGCAAAGATGTTCCTT+TGG | + | Chr3:12862833-12862852 | MsG0380012217.01.T01:intron | 50.0% | |
GATCTGTGGATTTGGACTCG+AGG | - | Chr3:12863708-12863727 | None:intergenic | 50.0% | |
GGTTCCCTTCATGACTACTG+AGG | + | Chr3:12864636-12864655 | MsG0380012217.01.T01:CDS | 50.0% | |
GTCAAACCTCCAGGAGTGAA+AGG | - | Chr3:12864937-12864956 | None:intergenic | 50.0% | |
GTCGAGAAGCTGTTGTTGTG+TGG | - | Chr3:12863683-12863702 | None:intergenic | 50.0% | |
TCACCTTCTGAATGGCAGCT+CGG | + | Chr3:12864609-12864628 | MsG0380012217.01.T01:CDS | 50.0% | |
TTCGTCACATGGCACATGCA+TGG | - | Chr3:12864201-12864220 | None:intergenic | 50.0% | |
!! | AGACGGACTGTTAGCATTGG+TGG | + | Chr3:12864768-12864787 | MsG0380012217.01.T01:CDS | 50.0% |
!! | GCTTGTTTCTGTCGTGCTCT+CGG | + | Chr3:12863750-12863769 | MsG0380012217.01.T01:CDS | 50.0% |
ACAGATGTTTGGCCATGCCG+AGG | - | Chr3:12863573-12863592 | None:intergenic | 55.0% | |
CAGATGTTTGGCCATGCCGA+GGG | - | Chr3:12863572-12863591 | None:intergenic | 55.0% | |
TCTGAATGGCAGCTCGGTCA+AGG | + | Chr3:12864615-12864634 | MsG0380012217.01.T01:CDS | 55.0% | |
TGACCGAGCTGCCATTCAGA+AGG | - | Chr3:12864615-12864634 | None:intergenic | 55.0% | |
TTGCAGGCGAAGCCGTATTC+TGG | - | Chr3:12862822-12862841 | None:intergenic | 55.0% | |
GAAGCTGCTGCAGCTAGTGC+TGG | + | Chr3:12865048-12865067 | MsG0380012217.01.T01:CDS | 60.0% | |
GAGAGTCGAGGTCCACCTGT+GGG | - | Chr3:12863784-12863803 | None:intergenic | 60.0% | |
CTCTCGGATGCTGCTCCCAC+AGG | + | Chr3:12863766-12863785 | MsG0380012217.01.T01:CDS | 65.0% | |
GGAGAGTCGAGGTCCACCTG+TGG | - | Chr3:12863785-12863804 | None:intergenic | 65.0% | |
TCGGATGCTGCTCCCACAGG+TGG | + | Chr3:12863769-12863788 | MsG0380012217.01.T01:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 12862523 | 12865197 | 12862523 | ID=MsG0380012217.01;Name=MsG0380012217.01 |
Chr3 | mRNA | 12862523 | 12865197 | 12862523 | ID=MsG0380012217.01.T01;Parent=MsG0380012217.01;Name=MsG0380012217.01.T01;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.66|1|1|3|0|468 |
Chr3 | exon | 12862523 | 12862683 | 12862523 | ID=MsG0380012217.01.T01:exon:402;Parent=MsG0380012217.01.T01 |
Chr3 | exon | 12863429 | 12863922 | 12863429 | ID=MsG0380012217.01.T01:exon:403;Parent=MsG0380012217.01.T01 |
Chr3 | exon | 12864446 | 12865197 | 12864446 | ID=MsG0380012217.01.T01:exon:404;Parent=MsG0380012217.01.T01 |
Chr3 | CDS | 12862523 | 12862683 | 12862523 | ID=MsG0380012217.01.T01:cds;Parent=MsG0380012217.01.T01 |
Chr3 | CDS | 12863429 | 12863922 | 12863429 | ID=MsG0380012217.01.T01:cds;Parent=MsG0380012217.01.T01 |
Chr3 | CDS | 12864446 | 12865197 | 12864446 | ID=MsG0380012217.01.T01:cds;Parent=MsG0380012217.01.T01 |
Gene Sequence |
Protein sequence |