AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012217.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012217.01.T01 MTR_3g018740 81.347 386 65 2 90 468 3 388 0.0 616
MsG0380012217.01.T01 MTR_3g101010 72.021 386 98 3 90 466 3 387 0.0 528
MsG0380012217.01.T01 MTR_8g027395 65.570 395 127 5 79 466 3 395 3.20e-174 494
MsG0380012217.01.T01 MTR_2g045980 66.667 390 115 5 90 468 3 388 1.10e-173 493
MsG0380012217.01.T01 MTR_4g045707 65.796 383 123 3 91 466 5 386 1.32e-173 493
MsG0380012217.01.T01 MTR_2g046030 65.641 390 119 5 90 468 3 388 3.69e-172 489
MsG0380012217.01.T01 MTR_8g027420 65.796 383 112 5 90 466 4 373 9.05e-168 477
MsG0380012217.01.T01 MTR_3g101030 62.720 397 118 4 97 466 34 427 2.54e-167 478
MsG0380012217.01.T01 MTR_3g101180 62.944 394 126 5 92 466 6 398 1.28e-166 475
MsG0380012217.01.T01 MTR_8g461160 64.103 390 126 5 92 468 6 394 5.69e-165 471
MsG0380012217.01.T01 MTR_3g048000 62.205 381 119 5 93 466 28 390 6.31e-163 466
MsG0380012217.01.T01 MTR_7g451890 58.396 399 152 4 82 467 4 401 1.51e-160 460
MsG0380012217.01.T01 MTR_4g088525 64.444 360 122 3 112 466 9 367 7.25e-159 454
MsG0380012217.01.T01 MTR_7g050810 58.750 400 148 5 84 467 5 403 1.58e-158 455
MsG0380012217.01.T01 MTR_7g047780 59.148 399 149 5 82 467 4 401 1.83e-157 452
MsG0380012217.01.T01 MTR_3g101130 60.567 388 136 6 91 466 5 387 2.47e-155 446
MsG0380012217.01.T01 MTR_7g050750 58.270 393 150 4 88 467 4 395 1.21e-154 445
MsG0380012217.01.T01 MTR_4g088535 64.021 378 112 6 92 463 7 366 1.69e-154 444
MsG0380012217.01.T01 MTR_3g101050 63.588 379 117 7 95 466 32 396 1.29e-148 429
MsG0380012217.01.T01 MTR_3g015620 58.663 404 126 6 77 467 4 379 4.08e-147 425
MsG0380012217.01.T01 MTR_3g102920 54.146 410 126 9 83 466 35 408 8.96e-130 382
MsG0380012217.01.T01 MTR_3g101190 55.381 381 93 7 90 466 3 310 8.41e-128 373
MsG0380012217.01.T01 MTR_3g018747 72.441 254 52 2 219 468 16 255 1.78e-121 355
MsG0380012217.01.T01 MTR_3g101200 50.254 394 159 6 84 466 23 390 4.86e-113 338
MsG0380012217.01.T01 MTR_3g100995 65.217 253 81 2 219 467 14 263 1.20e-110 328
MsG0380012217.01.T01 MTR_3g100010 55.769 312 86 2 115 389 40 336 4.47e-106 319
MsG0380012217.01.T01 MTR_7g050830 51.235 324 121 4 82 379 6 318 7.03e-105 315
MsG0380012217.01.T01 MTR_3g015760 62.353 255 86 3 219 467 30 280 1.60e-96 292
MsG0380012217.01.T01 MTR_3g111160 67.727 220 63 3 253 466 1 218 1.65e-92 280
MsG0380012217.01.T01 MTR_3g100520 63.426 216 68 3 253 466 1 207 3.67e-84 258
MsG0380012217.01.T01 MTR_3g114310 41.221 393 206 12 93 465 20 407 5.65e-80 254
MsG0380012217.01.T01 MTR_2g046410 64.251 207 66 3 269 468 144 349 1.27e-79 251
MsG0380012217.01.T01 MTR_3g101110 53.696 257 83 4 196 442 50 280 4.05e-77 243
MsG0380012217.01.T01 MTR_3g099970 60.000 190 58 2 219 408 27 198 4.50e-68 216
MsG0380012217.01.T01 MTR_3g111150 59.322 177 44 3 94 266 1 153 7.62e-61 196
MsG0380012217.01.T01 MTR_3g101150 64.557 158 46 2 318 466 1 157 1.18e-60 196
MsG0380012217.01.T01 MTR_3g102870 59.509 163 60 2 277 434 3 164 2.45e-56 185
MsG0380012217.01.T01 MTR_3g101020 54.839 186 53 2 286 467 1 159 2.99e-55 181
MsG0380012217.01.T01 MTR_3g100990 63.576 151 50 2 91 237 4 153 1.19e-53 187
MsG0380012217.01.T01 MTR_4g093550 67.045 88 29 0 88 175 2 89 6.37e-32 117
MsG0380012217.01.T01 MTR_6g046890 75.806 62 15 0 111 172 18 79 1.17e-24 99.4
MsG0380012217.01.T01 MTR_3g101140 61.194 67 20 1 406 466 48 114 1.62e-16 75.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012217.01.T01 AT1G47710 51.546 388 177 4 90 466 3 390 3.63e-137 400
MsG0380012217.01.T01 AT1G47710 51.546 388 177 4 90 466 30 417 2.15e-136 399
MsG0380012217.01.T01 AT3G45220 48.593 391 183 8 90 465 3 390 1.19e-119 355
MsG0380012217.01.T01 AT2G25240 49.482 386 179 7 90 465 3 382 5.70e-117 348
MsG0380012217.01.T01 AT2G26390 47.970 394 177 8 90 465 3 386 3.01e-114 342
MsG0380012217.01.T01 AT2G14540 41.562 397 195 8 83 465 24 397 9.19e-91 282
MsG0380012217.01.T01 AT1G64030 41.688 391 191 7 90 465 3 371 5.88e-89 276
MsG0380012217.01.T01 AT1G62170 40.103 389 195 7 92 465 66 431 9.20e-89 278
MsG0380012217.01.T01 AT2G35580 41.432 391 178 10 90 465 17 371 1.98e-85 267
MsG0380012217.01.T01 AT1G62170 36.967 422 195 7 92 465 66 464 2.14e-83 265
MsG0380012217.01.T01 AT1G64010 46.083 217 91 4 253 465 1 195 6.74e-55 182
MsG0380012217.01.T01 AT1G64010 44.554 202 86 4 268 465 2 181 1.12e-46 160
MsG0380012217.01.T01 AT1G62160 38.068 176 88 5 292 465 62 218 7.03e-29 113
MsG0380012217.01.T01 AT1G63280 49.074 108 51 2 219 324 15 120 1.31e-24 99.0
MsG0380012217.01.T01 AT1G51330 50.962 104 46 2 219 318 38 140 7.80e-23 96.3
MsG0380012217.01.T01 AT1G64020 34.821 112 70 3 97 206 10 120 2.10e-14 70.1

Find 96 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTAATGCACTCTACTTTAA+AGG 0.124495 3:+12864538 MsG0380012217.01.T01:CDS
CTTGCCTTCTGTCTTTAAAT+AGG 0.176010 3:-12863440 None:intergenic
TTGCCTTCTGTCTTTAAATA+GGG 0.247748 3:-12863439 None:intergenic
GAGGAAGAAGTTCTTTAATA+AGG 0.287252 3:-12864480 None:intergenic
TCCAGTTGATCTTCAGCTTC+TGG 0.294326 3:-12862577 None:intergenic
GGACAAAGTAGATTTATAAT+TGG 0.309459 3:-12863872 None:intergenic
CCTCGACTCTCCTTCGTAAA+TGG 0.330631 3:+12863793 MsG0380012217.01.T01:CDS
AACAGTCCGTCTTTGGCATT+TGG 0.339966 3:-12864757 None:intergenic
ATCTTCAGCTTCTGGTGAAA+TGG 0.346704 3:-12862569 None:intergenic
GTTGATTCATCTACTGATCT+TGG 0.347636 3:-12864502 None:intergenic
CAATGCTAACAGTCCGTCTT+TGG 0.349879 3:-12864764 None:intergenic
ACTGGAACCATTCTCTTTGT+TGG 0.353661 3:+12865147 MsG0380012217.01.T01:CDS
GTTGAGATGATCTGTGGATT+TGG 0.358590 3:-12863713 None:intergenic
GAAGTGAAGAAGTGAATTTA+TGG 0.362397 3:+12864437 MsG0380012217.01.T01:intron
AGGATTCAAGAGTTGTTTCA+TGG 0.367409 3:+12862613 MsG0380012217.01.T01:CDS
TGAAGGAAGGTTGAAGAGAA+AGG 0.378765 3:-12863834 None:intergenic
CTTCGTCTTCTTTATAAGAA+AGG 0.383719 3:+12864697 MsG0380012217.01.T01:CDS
AAAGAAGAACAACGATTCTT+CGG 0.387616 3:+12863518 MsG0380012217.01.T01:CDS
ACCAGAAGCTGAAGATCAAC+TGG 0.394117 3:+12862576 MsG0380012217.01.T01:CDS
TCTCCTTCGTAAATGGTGTA+TGG 0.396928 3:+12863800 MsG0380012217.01.T01:CDS
TCTCATATGTTGAAGGAGTT+AGG 0.397032 3:+12864901 MsG0380012217.01.T01:CDS
TCATGTACTTCTACTTTAGC+AGG 0.415176 3:-12864835 None:intergenic
TGCCGAGGGAAACATTTGTT+TGG 0.416643 3:-12863555 None:intergenic
AACTGGATTTGCAATATTCA+AGG 0.419891 3:+12862593 MsG0380012217.01.T01:CDS
TGAAACTTCTCATATGTTGA+AGG 0.426857 3:+12864894 MsG0380012217.01.T01:CDS
TTCTGTCGAGAACAGATGTT+TGG 0.430392 3:-12863581 None:intergenic
CTCTCGGATGCTGCTCCCAC+AGG 0.433983 3:+12863766 MsG0380012217.01.T01:CDS
AAGAAGAACAACGATTCTTC+GGG 0.443253 3:+12863519 MsG0380012217.01.T01:CDS
GCTTGTTTCTGTCGTGCTCT+CGG 0.446945 3:+12863750 MsG0380012217.01.T01:CDS
GAAGGAAGGTTGAAGAGAAA+GGG 0.450222 3:-12863833 None:intergenic
CAATGATACTTAGCACAACT+TGG 0.455852 3:-12863639 None:intergenic
TTCATTGAAGTAAATGAAGA+AGG 0.457204 3:+12865021 MsG0380012217.01.T01:CDS
CTCTGTTGATTTCATGACCA+AGG 0.457766 3:+12863894 MsG0380012217.01.T01:CDS
TGGTGAAATGGCTTCTGATA+AGG 0.459162 3:-12862557 None:intergenic
GTTAGCATTGGTGGAGAAGT+TGG 0.459448 3:+12864777 MsG0380012217.01.T01:CDS
GAAGCTGCTGCAGCTAGTGC+TGG 0.463886 3:+12865048 MsG0380012217.01.T01:CDS
GACTCTTCTCTTGTGAGTGA+TGG 0.470067 3:+12864967 MsG0380012217.01.T01:CDS
AGACGGACTGTTAGCATTGG+TGG 0.477068 3:+12864768 MsG0380012217.01.T01:CDS
AAAGGACATCAGAAGATTAG+TGG 0.477461 3:+12862649 MsG0380012217.01.T01:CDS
GCACAAAATACGATTGCAAA+AGG 0.477559 3:+12863482 MsG0380012217.01.T01:CDS
TCTCTAATCAGAAATAAGAA+AGG 0.483189 3:-12865117 None:intergenic
CTCCTTCGTAAATGGTGTAT+GGG 0.487373 3:+12863801 MsG0380012217.01.T01:CDS
AGACTATAGTGTAGTAAGTC+AGG 0.490539 3:-12864808 None:intergenic
AAAATACGATTGCAAAAGGA+TGG 0.495819 3:+12863486 MsG0380012217.01.T01:CDS
TGCCTTCTGTCTTTAAATAG+GGG 0.500069 3:-12863438 None:intergenic
CTGATTAGAGAAGATTCGAC+TGG 0.501644 3:+12865129 MsG0380012217.01.T01:CDS
CACTCTACTTTAAAGGAGCA+TGG 0.514338 3:+12864545 MsG0380012217.01.T01:CDS
CTCTAATCAGAAATAAGAAA+GGG 0.516757 3:-12865116 None:intergenic
TGCTAAGATCATTGATCAAG+AGG 0.517318 3:-12865183 None:intergenic
GTGCTAAGTATCATTGCTGC+TGG 0.522173 3:+12863646 MsG0380012217.01.T01:CDS
CATCCCCTCAGTAGTCATGA+AGG 0.522274 3:-12864641 None:intergenic
GTCAAACCTCCAGGAGTGAA+AGG 0.524050 3:-12864934 None:intergenic
AAGTGAAGAAGTGAATTTAT+GGG 0.526526 3:+12864438 MsG0380012217.01.T01:intron
CACTTGTCCAACAAAGAGAA+TGG 0.528533 3:-12865154 None:intergenic
TCTGAATGGCAGCTCGGTCA+AGG 0.533918 3:+12864615 MsG0380012217.01.T01:CDS
GATTTCATGACCAAGGTTTG+TGG 0.538661 3:+12863901 MsG0380012217.01.T01:CDS
TCGGATGCTGCTCCCACAGG+TGG 0.539122 3:+12863769 MsG0380012217.01.T01:CDS
TATCATTGCTGCTGGTTGTG+AGG 0.540874 3:+12863654 MsG0380012217.01.T01:CDS
ATCATTGCTGCTGGTTGTGA+GGG 0.541244 3:+12863655 MsG0380012217.01.T01:CDS
AACCCCTATTTAAAGACAGA+AGG 0.541317 3:+12863436 MsG0380012217.01.T01:CDS
GAAATATATTAGAAACAGAA+AGG 0.558448 3:-12864990 None:intergenic
TCACCTTCTGAATGGCAGCT+CGG 0.561657 3:+12864609 MsG0380012217.01.T01:CDS
TTTCTTCCAAATGCCAAAGA+CGG 0.563068 3:+12864751 MsG0380012217.01.T01:CDS
GATTCATCTACTGATCTTGG+AGG 0.568404 3:-12864499 None:intergenic
GAGGGAAACATTTGTTTGGT+TGG 0.569951 3:-12863551 None:intergenic
CATGGATCGAAATTCATCAA+AGG 0.570271 3:+12862631 MsG0380012217.01.T01:CDS
AACCAAACAAATGTTTCCCT+CGG 0.575261 3:+12863553 MsG0380012217.01.T01:CDS
GTCGAGAAGCTGTTGTTGTG+TGG 0.586119 3:-12863680 None:intergenic
GAGATATGTACCACAAACCT+TGG 0.589930 3:-12863911 None:intergenic
TGCATTAGTAAAGATGAGCC+TGG 0.591361 3:-12864524 None:intergenic
AACAAATGTTTCCCTCGGCA+TGG 0.592617 3:+12863558 MsG0380012217.01.T01:CDS
CAAAGACGGACTGTTAGCAT+TGG 0.595410 3:+12864765 MsG0380012217.01.T01:CDS
ACAGATGTTTGGCCATGCCG+AGG 0.599139 3:-12863570 None:intergenic
TGACCGAGCTGCCATTCAGA+AGG 0.601435 3:-12864612 None:intergenic
CAGATGTTTGGCCATGCCGA+GGG 0.601831 3:-12863569 None:intergenic
TCGAGAAGCTGTTGTTGTGT+GGG 0.605173 3:-12863679 None:intergenic
AAATACGATTGCAAAAGGAT+GGG 0.614356 3:+12863487 MsG0380012217.01.T01:CDS
TATGTTGAAGGAGTTAGGAG+TGG 0.615125 3:+12864906 MsG0380012217.01.T01:CDS
GTTCCCTTCATGACTACTGA+GGG 0.617001 3:+12864637 MsG0380012217.01.T01:CDS
AGCACAACTTGGATTGACAA+TGG 0.620415 3:-12863628 None:intergenic
CGTAGCTTCTGATGATGACA+TGG 0.621247 3:-12862521 None:intergenic
GAGAGTCGAGGTCCACCTGT+GGG 0.635303 3:-12863781 None:intergenic
TAATCAGAAATAAGAAAGGG+TGG 0.640706 3:-12865113 None:intergenic
TTTAAAGACAGAAGGCAAGA+CGG 0.641992 3:+12863444 MsG0380012217.01.T01:CDS
ATCCCCTCAGTAGTCATGAA+GGG 0.642828 3:-12864640 None:intergenic
GGAGAGTCGAGGTCCACCTG+TGG 0.645915 3:-12863782 None:intergenic
AGATTAGTGGAACTTTGCAA+CGG 0.650476 3:+12862662 MsG0380012217.01.T01:CDS
AACCCATACACCATTTACGA+AGG 0.656132 3:-12863803 None:intergenic
GAGATAGTTGAGATGATCTG+TGG 0.676063 3:-12863719 None:intergenic
GGTTCCCTTCATGACTACTG+AGG 0.679001 3:+12864636 MsG0380012217.01.T01:CDS
GATCTGTGGATTTGGACTCG+AGG 0.679726 3:-12863705 None:intergenic
CACGACAGAAACAAGCTGAG+AGG 0.687540 3:-12863743 None:intergenic
GATCAGTAGATGAATCAACC+AGG 0.703083 3:+12864506 MsG0380012217.01.T01:CDS
TTCCCTTCATGACTACTGAG+GGG 0.715192 3:+12864638 MsG0380012217.01.T01:CDS
CCATTTACGAAGGAGAGTCG+AGG 0.724675 3:-12863793 None:intergenic
CTTGGTCATGAAATCAACAG+AGG 0.726746 3:-12863893 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCATGTTAATTAATTAA+AGG + Chr3:12864000-12864019 MsG0380012217.01.T01:intron 10.0%
!! GGTTTATTAAAAAAAAAAAA+AGG - Chr3:12862991-12863010 None:intergenic 10.0%
!! TTTCATGTTAATTAATTAAA+GGG + Chr3:12864001-12864020 MsG0380012217.01.T01:intron 10.0%
!!! ATTTGTTTTTATTTTATTTG+AGG - Chr3:12863970-12863989 None:intergenic 10.0%
!!! TAAAACTAATTCATATTTTA+AGG + Chr3:12863374-12863393 MsG0380012217.01.T01:intron 10.0%
!!! TATTATATTTGTTATATTGT+TGG + Chr3:12863080-12863099 MsG0380012217.01.T01:intron 10.0%
!!! TTTGTTTTTATTTTATTTGA+GGG - Chr3:12863969-12863988 None:intergenic 10.0%
!!! AAAAAAAAAAGGTATTCTTA+TGG - Chr3:12862980-12862999 None:intergenic 15.0%
!!! ATTCAAATAACTGATTTTTA+TGG + Chr3:12864400-12864419 MsG0380012217.01.T01:intron 15.0%
!! CCTACAAAATAATATTCTTA+TGG - Chr3:12863012-12863031 None:intergenic 20.0%
!! GAAATATATTAGAAACAGAA+AGG - Chr3:12864993-12865012 None:intergenic 20.0%
!! TATTACGTTACTAAATTAGT+TGG - Chr3:12864312-12864331 None:intergenic 20.0%
!!! CCATAAGAATATTATTTTGT+AGG + Chr3:12863009-12863028 MsG0380012217.01.T01:intron 20.0%
!!! TCATATGAAATTTTGAATCT+TGG - Chr3:12864871-12864890 None:intergenic 20.0%
! AAGTGAAGAAGTGAATTTAT+GGG + Chr3:12864438-12864457 MsG0380012217.01.T01:intron 25.0%
! CTCTAATCAGAAATAAGAAA+GGG - Chr3:12865119-12865138 None:intergenic 25.0%
! GGACAAAGTAGATTTATAAT+TGG - Chr3:12863875-12863894 None:intergenic 25.0%
! TCTCTAATCAGAAATAAGAA+AGG - Chr3:12865120-12865139 None:intergenic 25.0%
! TTCATTGAAGTAAATGAAGA+AGG + Chr3:12865021-12865040 MsG0380012217.01.T01:CDS 25.0%
! TTCTTTAATCAGTGTAGAAT+TGG - Chr3:12864175-12864194 None:intergenic 25.0%
!! ATTAGGAATGGATTTCAAAT+TGG + Chr3:12862856-12862875 MsG0380012217.01.T01:intron 25.0%
!! ATTTCAAATTGGTTCTTCAT+AGG + Chr3:12862867-12862886 MsG0380012217.01.T01:intron 25.0%
!!! TTTTTAAGCGTATAACTAGA+AGG - Chr3:12862952-12862971 None:intergenic 25.0%
AAAATACGATTGCAAAAGGA+TGG + Chr3:12863486-12863505 MsG0380012217.01.T01:CDS 30.0%
AAAGAAGAACAACGATTCTT+CGG + Chr3:12863518-12863537 MsG0380012217.01.T01:CDS 30.0%
AAATACGATTGCAAAAGGAT+GGG + Chr3:12863487-12863506 MsG0380012217.01.T01:CDS 30.0%
AACTGGATTTGCAATATTCA+AGG + Chr3:12862593-12862612 MsG0380012217.01.T01:CDS 30.0%
AAGAAAACATCTCCAGAATA+CGG + Chr3:12862807-12862826 MsG0380012217.01.T01:intron 30.0%
ACAGATTGCTGTGAAAAAAA+GGG - Chr3:12863936-12863955 None:intergenic 30.0%
ACTAATGCACTCTACTTTAA+AGG + Chr3:12864538-12864557 MsG0380012217.01.T01:CDS 30.0%
CAAATCAGACAAAAGATCAT+TGG + Chr3:12862898-12862917 MsG0380012217.01.T01:intron 30.0%
CCAACTAACCAGAAAATTTA+GGG - Chr3:12864055-12864074 None:intergenic 30.0%
CTTCGTCTTCTTTATAAGAA+AGG + Chr3:12864697-12864716 MsG0380012217.01.T01:CDS 30.0%
GAAGTGAAGAAGTGAATTTA+TGG + Chr3:12864437-12864456 MsG0380012217.01.T01:intron 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - Chr3:12864483-12864502 None:intergenic 30.0%
GATAGTAAAGTTCATGACTT+TGG + Chr3:12864143-12864162 MsG0380012217.01.T01:intron 30.0%
GGATGCTAGAAAACAATAAA+GGG - Chr3:12864291-12864310 None:intergenic 30.0%
TAATAGCATCTGATTTCTTG+CGG + Chr3:12863400-12863419 MsG0380012217.01.T01:intron 30.0%
TAATCAGAAATAAGAAAGGG+TGG - Chr3:12865116-12865135 None:intergenic 30.0%
TCCAACTAACCAGAAAATTT+AGG - Chr3:12864056-12864075 None:intergenic 30.0%
TGAAACTTCTCATATGTTGA+AGG + Chr3:12864894-12864913 MsG0380012217.01.T01:CDS 30.0%
TGACGAAACACTTTGTTAAA+TGG + Chr3:12864214-12864233 MsG0380012217.01.T01:intron 30.0%
TGGATGCTAGAAAACAATAA+AGG - Chr3:12864292-12864311 None:intergenic 30.0%
TTGCCTTCTGTCTTTAAATA+GGG - Chr3:12863442-12863461 None:intergenic 30.0%
! ACTTTATTTCAGCACAAAGT+AGG + Chr3:12864100-12864119 MsG0380012217.01.T01:intron 30.0%
! CAATGATCTTTTGTCTGATT+TGG - Chr3:12862900-12862919 None:intergenic 30.0%
! CAGAAAATTTAGGGTATACT+AGG - Chr3:12864046-12864065 None:intergenic 30.0%
! CTAGTATACCCTAAATTTTC+TGG + Chr3:12864044-12864063 MsG0380012217.01.T01:intron 30.0%
! CTGAAATAAAGTAGAAGCAT+TGG - Chr3:12864092-12864111 None:intergenic 30.0%
! CTTTATTTCAGCACAAAGTA+GGG + Chr3:12864101-12864120 MsG0380012217.01.T01:intron 30.0%
! TATGATTTTCACCTTCTGAA+TGG + Chr3:12864601-12864620 MsG0380012217.01.T01:CDS 30.0%
!!! ATTTTTTGACAATGACACCT+AGG - Chr3:12863310-12863329 None:intergenic 30.0%
!!! GTCTTTTCAAAGGTGTTTTA+AGG + Chr3:12862684-12862703 MsG0380012217.01.T01:intron 30.0%
AAAGGACATCAGAAGATTAG+TGG + Chr3:12862649-12862668 MsG0380012217.01.T01:CDS 35.0%
AACCAAACAAATGTTTCCCT+CGG + Chr3:12863553-12863572 MsG0380012217.01.T01:CDS 35.0%
AACCCCTATTTAAAGACAGA+AGG + Chr3:12863436-12863455 MsG0380012217.01.T01:CDS 35.0%
AAGAAGAACAACGATTCTTC+GGG + Chr3:12863519-12863538 MsG0380012217.01.T01:CDS 35.0%
AGACTATAGTGTAGTAAGTC+AGG - Chr3:12864811-12864830 None:intergenic 35.0%
AGATTAGTGGAACTTTGCAA+CGG + Chr3:12862662-12862681 MsG0380012217.01.T01:CDS 35.0%
CAAAGATGTTCCTTTGGATT+AGG + Chr3:12862839-12862858 MsG0380012217.01.T01:intron 35.0%
CAATGATACTTAGCACAACT+TGG - Chr3:12863642-12863661 None:intergenic 35.0%
CATGGATCGAAATTCATCAA+AGG + Chr3:12862631-12862650 MsG0380012217.01.T01:CDS 35.0%
CTTGCCTTCTGTCTTTAAAT+AGG - Chr3:12863443-12863462 None:intergenic 35.0%
GAAATCCATTCCTAATCCAA+AGG - Chr3:12862852-12862871 None:intergenic 35.0%
GACAGATTGCTGTGAAAAAA+AGG - Chr3:12863937-12863956 None:intergenic 35.0%
GCACAAAATACGATTGCAAA+AGG + Chr3:12863482-12863501 MsG0380012217.01.T01:CDS 35.0%
TCATGTACTTCTACTTTAGC+AGG - Chr3:12864838-12864857 None:intergenic 35.0%
TCTCATATGTTGAAGGAGTT+AGG + Chr3:12864901-12864920 MsG0380012217.01.T01:CDS 35.0%
TGCCTTCTGTCTTTAAATAG+GGG - Chr3:12863441-12863460 None:intergenic 35.0%
TGCTAGAAAACAATAAAGGG+AGG - Chr3:12864288-12864307 None:intergenic 35.0%
TTTAAAGACAGAAGGCAAGA+CGG + Chr3:12863444-12863463 MsG0380012217.01.T01:CDS 35.0%
TTTCTTCCAAATGCCAAAGA+CGG + Chr3:12864751-12864770 MsG0380012217.01.T01:CDS 35.0%
! AGGATTCAAGAGTTGTTTCA+TGG + Chr3:12862613-12862632 MsG0380012217.01.T01:CDS 35.0%
! ATGTTCCTTTGGATTAGGAA+TGG + Chr3:12862844-12862863 MsG0380012217.01.T01:intron 35.0%
! GGAAGACAAGATTCTTTTGA+AGG - Chr3:12863854-12863873 None:intergenic 35.0%
! GTTGATTCATCTACTGATCT+TGG - Chr3:12864505-12864524 None:intergenic 35.0%
! TAACAAAGTGTTTCGTCACA+TGG - Chr3:12864212-12864231 None:intergenic 35.0%
!! GACAAGATTCTTTTGAAGGA+AGG - Chr3:12863850-12863869 None:intergenic 35.0%
!! GCTAGTTCTAATAAAAGCCT+AGG + Chr3:12863290-12863309 MsG0380012217.01.T01:intron 35.0%
!!! CCCTAAATTTTCTGGTTAGT+TGG + Chr3:12864052-12864071 MsG0380012217.01.T01:intron 35.0%
AACCCATACACCATTTACGA+AGG - Chr3:12863806-12863825 None:intergenic 40.0%
ACTGGAACCATTCTCTTTGT+TGG + Chr3:12865147-12865166 MsG0380012217.01.T01:CDS 40.0%
AGCACAACTTGGATTGACAA+TGG - Chr3:12863631-12863650 None:intergenic 40.0%
ATCCAAAGGAACATCTTTGC+AGG - Chr3:12862838-12862857 None:intergenic 40.0%
ATCTTCAGCTTCTGGTGAAA+TGG - Chr3:12862572-12862591 None:intergenic 40.0%
CACTTGTCCAACAAAGAGAA+TGG - Chr3:12865157-12865176 None:intergenic 40.0%
CTCCTTCGTAAATGGTGTAT+GGG + Chr3:12863801-12863820 MsG0380012217.01.T01:CDS 40.0%
CTGATTAGAGAAGATTCGAC+TGG + Chr3:12865129-12865148 MsG0380012217.01.T01:CDS 40.0%
CTTGGTCATGAAATCAACAG+AGG - Chr3:12863896-12863915 None:intergenic 40.0%
GAAAGATCAAGCTTCAACAG+AGG + Chr3:12862922-12862941 MsG0380012217.01.T01:intron 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - Chr3:12863836-12863855 None:intergenic 40.0%
GAGATAGTTGAGATGATCTG+TGG - Chr3:12863722-12863741 None:intergenic 40.0%
GAGATATGTACCACAAACCT+TGG - Chr3:12863914-12863933 None:intergenic 40.0%
GAGGGAAACATTTGTTTGGT+TGG - Chr3:12863554-12863573 None:intergenic 40.0%
GATCAGTAGATGAATCAACC+AGG + Chr3:12864506-12864525 MsG0380012217.01.T01:CDS 40.0%
GATTCATCTACTGATCTTGG+AGG - Chr3:12864502-12864521 None:intergenic 40.0%
GATTTCATGACCAAGGTTTG+TGG + Chr3:12863901-12863920 MsG0380012217.01.T01:CDS 40.0%
GTAGACACAAAACAGAGTAG+TGG - Chr3:12862777-12862796 None:intergenic 40.0%
GTTGAGATGATCTGTGGATT+TGG - Chr3:12863716-12863735 None:intergenic 40.0%
TAAGGCATGTGCTTGCAATT+TGG + Chr3:12862702-12862721 MsG0380012217.01.T01:intron 40.0%
TATGTTGAAGGAGTTAGGAG+TGG + Chr3:12864906-12864925 MsG0380012217.01.T01:CDS 40.0%
TCCTGGAGGTTTGACAAAAA+TGG + Chr3:12864942-12864961 MsG0380012217.01.T01:CDS 40.0%
TCTCCTTCGTAAATGGTGTA+TGG + Chr3:12863800-12863819 MsG0380012217.01.T01:CDS 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - Chr3:12863837-12863856 None:intergenic 40.0%
TGCATTAGTAAAGATGAGCC+TGG - Chr3:12864527-12864546 None:intergenic 40.0%
TGGAGGTTTGACAAAAATGG+TGG + Chr3:12864945-12864964 MsG0380012217.01.T01:CDS 40.0%
TGGGCTGAAAAAGAGATGAA+TGG + Chr3:12864457-12864476 MsG0380012217.01.T01:CDS 40.0%
TGGTGAAATGGCTTCTGATA+AGG - Chr3:12862560-12862579 None:intergenic 40.0%
TTCTGTCGAGAACAGATGTT+TGG - Chr3:12863584-12863603 None:intergenic 40.0%
! ACAAAACAGAGTAGTGGAGA+AGG - Chr3:12862771-12862790 None:intergenic 40.0%
! CACTCTACTTTAAAGGAGCA+TGG + Chr3:12864545-12864564 MsG0380012217.01.T01:CDS 40.0%
! CTTTGCAACGGTCTTTTCAA+AGG + Chr3:12862674-12862693 MsG0380012217.01.T01:intron 40.0%
!! ACCATTTTTGTCAAACCTCC+AGG - Chr3:12864946-12864965 None:intergenic 40.0%
!! CTCTGTTGATTTCATGACCA+AGG + Chr3:12863894-12863913 MsG0380012217.01.T01:CDS 40.0%
AACAAATGTTTCCCTCGGCA+TGG + Chr3:12863558-12863577 MsG0380012217.01.T01:CDS 45.0%
AACAGTCCGTCTTTGGCATT+TGG - Chr3:12864760-12864779 None:intergenic 45.0%
ACCAGAAGCTGAAGATCAAC+TGG + Chr3:12862576-12862595 MsG0380012217.01.T01:CDS 45.0%
ATCCCCTCAGTAGTCATGAA+GGG - Chr3:12864643-12864662 None:intergenic 45.0%
ATCTGATTTCTTGCGGCACA+AGG + Chr3:12863407-12863426 MsG0380012217.01.T01:intron 45.0%
CAATGCTAACAGTCCGTCTT+TGG - Chr3:12864767-12864786 None:intergenic 45.0%
GACTCTTCTCTTGTGAGTGA+TGG + Chr3:12864967-12864986 MsG0380012217.01.T01:CDS 45.0%
GTGCTAAGTATCATTGCTGC+TGG + Chr3:12863646-12863665 MsG0380012217.01.T01:CDS 45.0%
GTTCCCTTCATGACTACTGA+GGG + Chr3:12864637-12864656 MsG0380012217.01.T01:CDS 45.0%
TCCAGTTGATCTTCAGCTTC+TGG - Chr3:12862580-12862599 None:intergenic 45.0%
TCGAGAAGCTGTTGTTGTGT+GGG - Chr3:12863682-12863701 None:intergenic 45.0%
TGCCGAGGGAAACATTTGTT+TGG - Chr3:12863558-12863577 None:intergenic 45.0%
TTCCCTTCATGACTACTGAG+GGG + Chr3:12864638-12864657 MsG0380012217.01.T01:CDS 45.0%
! ATCATTGCTGCTGGTTGTGA+GGG + Chr3:12863655-12863674 MsG0380012217.01.T01:CDS 45.0%
! CTGTTTTGTGTCTACGCTAC+AGG + Chr3:12862782-12862801 MsG0380012217.01.T01:intron 45.0%
! GTTTTACCTTTCACTCCTGG+AGG + Chr3:12864928-12864947 MsG0380012217.01.T01:CDS 45.0%
! TATCATTGCTGCTGGTTGTG+AGG + Chr3:12863654-12863673 MsG0380012217.01.T01:CDS 45.0%
!! CAAAGACGGACTGTTAGCAT+TGG + Chr3:12864765-12864784 MsG0380012217.01.T01:CDS 45.0%
!! GTGGTTTTACCTTTCACTCC+TGG + Chr3:12864925-12864944 MsG0380012217.01.T01:CDS 45.0%
!! GTTAGCATTGGTGGAGAAGT+TGG + Chr3:12864777-12864796 MsG0380012217.01.T01:CDS 45.0%
CACGACAGAAACAAGCTGAG+AGG - Chr3:12863746-12863765 None:intergenic 50.0%
CATCCCCTCAGTAGTCATGA+AGG - Chr3:12864644-12864663 None:intergenic 50.0%
CCATTTACGAAGGAGAGTCG+AGG - Chr3:12863796-12863815 None:intergenic 50.0%
CCTCGACTCTCCTTCGTAAA+TGG + Chr3:12863793-12863812 MsG0380012217.01.T01:CDS 50.0%
CGCCTGCAAAGATGTTCCTT+TGG + Chr3:12862833-12862852 MsG0380012217.01.T01:intron 50.0%
GATCTGTGGATTTGGACTCG+AGG - Chr3:12863708-12863727 None:intergenic 50.0%
GGTTCCCTTCATGACTACTG+AGG + Chr3:12864636-12864655 MsG0380012217.01.T01:CDS 50.0%
GTCAAACCTCCAGGAGTGAA+AGG - Chr3:12864937-12864956 None:intergenic 50.0%
GTCGAGAAGCTGTTGTTGTG+TGG - Chr3:12863683-12863702 None:intergenic 50.0%
TCACCTTCTGAATGGCAGCT+CGG + Chr3:12864609-12864628 MsG0380012217.01.T01:CDS 50.0%
TTCGTCACATGGCACATGCA+TGG - Chr3:12864201-12864220 None:intergenic 50.0%
!! AGACGGACTGTTAGCATTGG+TGG + Chr3:12864768-12864787 MsG0380012217.01.T01:CDS 50.0%
!! GCTTGTTTCTGTCGTGCTCT+CGG + Chr3:12863750-12863769 MsG0380012217.01.T01:CDS 50.0%
ACAGATGTTTGGCCATGCCG+AGG - Chr3:12863573-12863592 None:intergenic 55.0%
CAGATGTTTGGCCATGCCGA+GGG - Chr3:12863572-12863591 None:intergenic 55.0%
TCTGAATGGCAGCTCGGTCA+AGG + Chr3:12864615-12864634 MsG0380012217.01.T01:CDS 55.0%
TGACCGAGCTGCCATTCAGA+AGG - Chr3:12864615-12864634 None:intergenic 55.0%
TTGCAGGCGAAGCCGTATTC+TGG - Chr3:12862822-12862841 None:intergenic 55.0%
GAAGCTGCTGCAGCTAGTGC+TGG + Chr3:12865048-12865067 MsG0380012217.01.T01:CDS 60.0%
GAGAGTCGAGGTCCACCTGT+GGG - Chr3:12863784-12863803 None:intergenic 60.0%
CTCTCGGATGCTGCTCCCAC+AGG + Chr3:12863766-12863785 MsG0380012217.01.T01:CDS 65.0%
GGAGAGTCGAGGTCCACCTG+TGG - Chr3:12863785-12863804 None:intergenic 65.0%
TCGGATGCTGCTCCCACAGG+TGG + Chr3:12863769-12863788 MsG0380012217.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 12862523 12865197 12862523 ID=MsG0380012217.01;Name=MsG0380012217.01
Chr3 mRNA 12862523 12865197 12862523 ID=MsG0380012217.01.T01;Parent=MsG0380012217.01;Name=MsG0380012217.01.T01;_AED=0.51;_eAED=0.51;_QI=0|0|0|0.66|1|1|3|0|468
Chr3 exon 12862523 12862683 12862523 ID=MsG0380012217.01.T01:exon:402;Parent=MsG0380012217.01.T01
Chr3 exon 12863429 12863922 12863429 ID=MsG0380012217.01.T01:exon:403;Parent=MsG0380012217.01.T01
Chr3 exon 12864446 12865197 12864446 ID=MsG0380012217.01.T01:exon:404;Parent=MsG0380012217.01.T01
Chr3 CDS 12862523 12862683 12862523 ID=MsG0380012217.01.T01:cds;Parent=MsG0380012217.01.T01
Chr3 CDS 12863429 12863922 12863429 ID=MsG0380012217.01.T01:cds;Parent=MsG0380012217.01.T01
Chr3 CDS 12864446 12865197 12864446 ID=MsG0380012217.01.T01:cds;Parent=MsG0380012217.01.T01
Gene Sequence

>MsG0380012217.01.T01

ATGTCATCATCAGAAGCTACGACATCAGAAGCTGCCTTATCAGAAGCCATTTCACCAGAAGCTGAAGATCAACTGGATTTGCAATATTCAAGGATTCAAGAGTTGTTTCATGGATCGAAATTCATCAAAGGACATCAGAAGATTAGTGGAACTTTGCAACGGCATTCAAACCCCTATTTAAAGACAGAAGGCAAGACGGTTGCAGTATTGTATTGCACAAAATACGATTGCAAAAGGATGGGAAGAAACAAAAGAAGAACAACGATTCTTCGGGAATCAATCACCAACCAAACAAATGTTTCCCTCGGCATGGCCAAACATCTGTTCTCGACAGAATCAGACAAGAACATCGTGTTTTCGCCATTGTCAATCCAAGTTGTGCTAAGTATCATTGCTGCTGGTTGTGAGGGTCCCACACAACAACAGCTTCTCGACTTCCTCGAGTCCAAATCCACAGATCATCTCAACTATCTCGCCTCTCAGCTTGTTTCTGTCGTGCTCTCGGATGCTGCTCCCACAGGTGGACCTCGACTCTCCTTCGTAAATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAAAGAATCTTGTCTTCCAATTATAAATCTACTTTGTCCTCTGTTGATTTCATGACCAAGGTTTGTGAAGTGAATTTATGGGCTGAAAAAGAGATGAATGGCCTTATTAAAGAACTTCTTCCTCCAAGATCAGTAGATGAATCAACCAGGCTCATCTTTACTAATGCACTCTACTTTAAAGGAGCATGGAGTGAGAAGTTTAATGTTTCGAAAACGAAAGACTATGATTTTCACCTTCTGAATGGCAGCTCGGTCAAGGTTCCCTTCATGACTACTGAGGGGATGCAGTTTATTGATGAATACTATGATTATAAAGTTCTTCGTCTTCTTTATAAGAAAGGCGTAGACAAACGTCAATTTTCTATGTACATTTTTCTTCCAAATGCCAAAGACGGACTGTTAGCATTGGTGGAGAAGTTGGCATCTGAACCTGACTTACTACACTATAGTCTTCGTCCTGCTAAAGTAGAAGTACATGAATTCAGAATTCCAAGATTCAAAATTTCATATGAGCTTGAAACTTCTCATATGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCACTCCTGGAGGTTTGACAAAAATGGTGGACTCTTCTCTTGTGAGTGATGGCCTTTCTGTTTCTAATATATTTCACAAATCTTTCATTGAAGTAAATGAAGAAGGCACTGAAGCTGCTGCAGCTAGTGCTGGATACTGTGACGCTAAGTGTGTTGCGATAGACTTTGTAGCTGACCACCCTTTCTTATTTCTGATTAGAGAAGATTCGACTGGAACCATTCTCTTTGTTGGACAAGTGCTCAATCCTCTTGATCAATGA

Protein sequence

>MsG0380012217.01.T01

MSSSEATTSEAALSEAISPEAEDQLDLQYSRIQELFHGSKFIKGHQKISGTLQRHSNPYLKTEGKTVAVLYCTKYDCKRMGRNKRRTTILRESITNQTNVSLGMAKHLFSTESDKNIVFSPLSIQVVLSIIAAGCEGPTQQQLLDFLESKSTDHLNYLASQLVSVVLSDAAPTGGPRLSFVNGVWVEQTLSLQPSFKRILSSNYKSTLSSVDFMTKVCEVNLWAEKEMNGLIKELLPPRSVDESTRLIFTNALYFKGAWSEKFNVSKTKDYDFHLLNGSSVKVPFMTTEGMQFIDEYYDYKVLRLLYKKGVDKRQFSMYIFLPNAKDGLLALVEKLASEPDLLHYSLRPAKVEVHEFRIPRFKISYELETSHMLKELGVVLPFTPGGLTKMVDSSLVSDGLSVSNIFHKSFIEVNEEGTEAAAASAGYCDAKCVAIDFVADHPFLFLIREDSTGTILFVGQVLNPLDQ*