Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002327.01.T01 | RHN65795.1 | 75.758 | 396 | 73 | 2 | 1 | 373 | 46 | 441 | 0 | 575 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002327.01.T01 | Q9S7T8 | 48.196 | 388 | 174 | 4 | 11 | 371 | 3 | 390 | 5.59E-122 | 360 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002327.01.T01 | A0A396IPH6 | 75.758 | 396 | 73 | 2 | 1 | 373 | 46 | 441 | 0.0 | 575 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002233.01 | MsG0180002327.01 | 0.815424 | 9.313213e-52 | 6.418470e-49 |
| MsG0180002327.01 | MsG0180002328.01 | 0.965916 | 3.146787e-125 | 2.072939e-119 |
| MsG0180002327.01 | MsG0380012215.01 | 0.862901 | 3.647834e-64 | 1.085760e-60 |
| MsG0180002327.01 | MsG0380012217.01 | 0.843469 | 1.374686e-58 | 2.152952e-55 |
| MsG0180002327.01 | MsG0480021587.01 | 0.838740 | 2.403079e-57 | 3.248426e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002327.01.T01 | MTR_3g018740 | 77.202 | 386 | 65 | 2 | 11 | 373 | 3 | 388 | 0.0 | 567 |
| MsG0180002327.01.T01 | MTR_3g101010 | 68.135 | 386 | 97 | 3 | 11 | 371 | 3 | 387 | 1.74e-168 | 476 |
| MsG0180002327.01.T01 | MTR_3g048000 | 65.659 | 364 | 118 | 4 | 14 | 371 | 28 | 390 | 3.74e-167 | 473 |
| MsG0180002327.01.T01 | MTR_8g027395 | 63.359 | 393 | 118 | 5 | 3 | 371 | 5 | 395 | 1.35e-165 | 469 |
| MsG0180002327.01.T01 | MTR_8g027420 | 66.398 | 372 | 112 | 5 | 11 | 371 | 4 | 373 | 5.35e-163 | 461 |
| MsG0180002327.01.T01 | MTR_4g045707 | 63.185 | 383 | 117 | 3 | 12 | 371 | 5 | 386 | 1.24e-162 | 461 |
| MsG0180002327.01.T01 | MTR_2g045980 | 63.333 | 390 | 112 | 6 | 11 | 373 | 3 | 388 | 7.08e-160 | 454 |
| MsG0180002327.01.T01 | MTR_2g046030 | 62.051 | 390 | 117 | 5 | 11 | 373 | 3 | 388 | 2.91e-158 | 450 |
| MsG0180002327.01.T01 | MTR_4g088535 | 65.241 | 374 | 108 | 6 | 8 | 368 | 2 | 366 | 1.05e-154 | 441 |
| MsG0180002327.01.T01 | MTR_3g101180 | 60.506 | 395 | 118 | 6 | 13 | 371 | 6 | 398 | 1.37e-154 | 441 |
| MsG0180002327.01.T01 | MTR_8g461160 | 61.282 | 390 | 121 | 5 | 13 | 373 | 6 | 394 | 2.12e-151 | 432 |
| MsG0180002327.01.T01 | MTR_3g101030 | 60.453 | 397 | 111 | 6 | 18 | 371 | 34 | 427 | 7.19e-151 | 432 |
| MsG0180002327.01.T01 | MTR_7g451890 | 56.391 | 399 | 144 | 4 | 3 | 372 | 4 | 401 | 2.20e-149 | 428 |
| MsG0180002327.01.T01 | MTR_7g050810 | 56.750 | 400 | 140 | 5 | 5 | 372 | 5 | 403 | 9.04e-149 | 426 |
| MsG0180002327.01.T01 | MTR_7g047780 | 57.143 | 399 | 141 | 5 | 3 | 372 | 4 | 401 | 1.06e-147 | 424 |
| MsG0180002327.01.T01 | MTR_3g015620 | 62.735 | 373 | 117 | 6 | 13 | 372 | 16 | 379 | 3.00e-144 | 414 |
| MsG0180002327.01.T01 | MTR_7g050750 | 56.378 | 392 | 141 | 5 | 10 | 372 | 5 | 395 | 3.14e-144 | 414 |
| MsG0180002327.01.T01 | MTR_3g101130 | 57.990 | 388 | 130 | 5 | 12 | 371 | 5 | 387 | 5.68e-144 | 414 |
| MsG0180002327.01.T01 | MTR_4g088525 | 60.942 | 361 | 119 | 3 | 32 | 371 | 8 | 367 | 4.70e-143 | 410 |
| MsG0180002327.01.T01 | MTR_3g101190 | 58.402 | 363 | 94 | 6 | 11 | 371 | 3 | 310 | 3.26e-132 | 381 |
| MsG0180002327.01.T01 | MTR_3g101050 | 60.733 | 382 | 105 | 8 | 17 | 371 | 33 | 396 | 3.75e-132 | 384 |
| MsG0180002327.01.T01 | MTR_3g102920 | 53.034 | 379 | 114 | 7 | 21 | 371 | 66 | 408 | 6.38e-114 | 338 |
| MsG0180002327.01.T01 | MTR_3g101200 | 48.861 | 395 | 147 | 5 | 5 | 371 | 23 | 390 | 8.95e-107 | 319 |
| MsG0180002327.01.T01 | MTR_3g018747 | 65.517 | 261 | 52 | 3 | 137 | 373 | 9 | 255 | 4.11e-104 | 307 |
| MsG0180002327.01.T01 | MTR_7g050830 | 51.757 | 313 | 120 | 4 | 3 | 284 | 6 | 318 | 1.01e-102 | 306 |
| MsG0180002327.01.T01 | MTR_3g100995 | 60.079 | 253 | 74 | 3 | 144 | 372 | 14 | 263 | 4.58e-95 | 285 |
| MsG0180002327.01.T01 | MTR_3g015760 | 57.040 | 277 | 89 | 4 | 122 | 372 | 8 | 280 | 4.78e-88 | 267 |
| MsG0180002327.01.T01 | MTR_3g100010 | 50.962 | 312 | 85 | 4 | 36 | 294 | 40 | 336 | 2.74e-87 | 268 |
| MsG0180002327.01.T01 | MTR_3g114310 | 39.286 | 392 | 199 | 11 | 14 | 370 | 20 | 407 | 3.01e-75 | 239 |
| MsG0180002327.01.T01 | MTR_3g111160 | 60.000 | 210 | 61 | 2 | 185 | 371 | 9 | 218 | 1.59e-72 | 225 |
| MsG0180002327.01.T01 | MTR_3g111150 | 63.636 | 176 | 40 | 1 | 15 | 190 | 1 | 152 | 1.30e-69 | 216 |
| MsG0180002327.01.T01 | MTR_3g100520 | 55.556 | 216 | 65 | 4 | 178 | 371 | 1 | 207 | 1.76e-68 | 214 |
| MsG0180002327.01.T01 | MTR_3g101110 | 51.695 | 236 | 60 | 4 | 140 | 347 | 71 | 280 | 4.07e-63 | 203 |
| MsG0180002327.01.T01 | MTR_2g046410 | 51.681 | 238 | 76 | 6 | 163 | 373 | 124 | 349 | 6.27e-62 | 202 |
| MsG0180002327.01.T01 | MTR_3g099970 | 57.923 | 183 | 67 | 4 | 137 | 313 | 20 | 198 | 1.81e-59 | 191 |
| MsG0180002327.01.T01 | MTR_3g101150 | 63.576 | 151 | 45 | 2 | 230 | 371 | 8 | 157 | 1.12e-55 | 180 |
| MsG0180002327.01.T01 | MTR_3g100990 | 73.016 | 126 | 34 | 0 | 12 | 137 | 4 | 129 | 9.11e-53 | 182 |
| MsG0180002327.01.T01 | MTR_3g102870 | 50.610 | 164 | 51 | 3 | 200 | 334 | 1 | 163 | 2.79e-39 | 138 |
| MsG0180002327.01.T01 | MTR_3g101020 | 46.237 | 186 | 49 | 3 | 211 | 372 | 1 | 159 | 2.64e-37 | 132 |
| MsG0180002327.01.T01 | MTR_4g093550 | 65.909 | 88 | 30 | 0 | 9 | 96 | 2 | 89 | 7.67e-28 | 105 |
| MsG0180002327.01.T01 | MTR_6g046890 | 65.278 | 72 | 20 | 1 | 33 | 99 | 19 | 90 | 6.39e-20 | 85.5 |
| MsG0180002327.01.T01 | MTR_3g101140 | 60.811 | 74 | 22 | 2 | 304 | 371 | 42 | 114 | 7.11e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002327.01.T01 | AT1G47710 | 48.196 | 388 | 174 | 4 | 11 | 371 | 3 | 390 | 5.70e-123 | 360 |
| MsG0180002327.01.T01 | AT1G47710 | 48.196 | 388 | 174 | 4 | 11 | 371 | 30 | 417 | 2.02e-122 | 360 |
| MsG0180002327.01.T01 | AT3G45220 | 45.501 | 389 | 182 | 7 | 11 | 370 | 3 | 390 | 1.20e-108 | 324 |
| MsG0180002327.01.T01 | AT2G25240 | 44.987 | 389 | 176 | 7 | 11 | 370 | 3 | 382 | 5.74e-102 | 306 |
| MsG0180002327.01.T01 | AT2G26390 | 44.643 | 392 | 177 | 7 | 11 | 370 | 3 | 386 | 1.16e-101 | 306 |
| MsG0180002327.01.T01 | AT1G64030 | 37.596 | 391 | 191 | 6 | 11 | 370 | 3 | 371 | 8.64e-82 | 255 |
| MsG0180002327.01.T01 | AT2G35580 | 39.898 | 391 | 182 | 8 | 11 | 370 | 3 | 371 | 5.49e-80 | 250 |
| MsG0180002327.01.T01 | AT2G14540 | 38.539 | 397 | 191 | 7 | 4 | 370 | 24 | 397 | 7.80e-79 | 248 |
| MsG0180002327.01.T01 | AT1G62170 | 37.500 | 392 | 189 | 7 | 11 | 370 | 64 | 431 | 1.17e-75 | 241 |
| MsG0180002327.01.T01 | AT1G62170 | 34.752 | 423 | 187 | 8 | 13 | 370 | 66 | 464 | 9.76e-69 | 224 |
| MsG0180002327.01.T01 | AT1G64010 | 38.249 | 217 | 88 | 4 | 178 | 370 | 1 | 195 | 1.07e-38 | 137 |
| MsG0180002327.01.T01 | AT1G64010 | 38.119 | 202 | 79 | 4 | 193 | 370 | 2 | 181 | 6.49e-33 | 122 |
| MsG0180002327.01.T01 | AT1G51330 | 48.936 | 94 | 48 | 0 | 135 | 228 | 29 | 122 | 5.65e-21 | 90.1 |
| MsG0180002327.01.T01 | AT1G63280 | 47.368 | 95 | 48 | 1 | 134 | 228 | 5 | 97 | 9.23e-20 | 84.3 |
| MsG0180002327.01.T01 | AT1G62160 | 38.519 | 135 | 62 | 6 | 237 | 370 | 104 | 218 | 1.54e-17 | 81.3 |
| MsG0180002327.01.T01 | AT1G64020 | 31.250 | 112 | 74 | 3 | 18 | 127 | 10 | 120 | 1.14e-11 | 62.0 |
Find 78 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 1:+36801360 | MsG0180002327.01.T01:CDS |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 1:+36801259 | MsG0180002327.01.T01:CDS |
| TTCATTGAAGTAAATGAAAA+AGG | 0.248061 | 1:+36801842 | MsG0180002327.01.T01:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 1:-36801302 | None:intergenic |
| GTTGAGATCATCGGTGGATT+TGG | 0.293645 | 1:-36800635 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 1:-36800794 | None:intergenic |
| CAATGCTAACAGTCCATCTT+TGG | 0.352985 | 1:-36801585 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 1:+36801968 | MsG0180002327.01.T01:CDS |
| CTCTCAGACGCCGCTTTCAC+TGG | 0.370831 | 1:+36800688 | MsG0180002327.01.T01:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 1:-36800756 | None:intergenic |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 1:+36801260 | MsG0180002327.01.T01:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 1:+36801722 | MsG0180002327.01.T01:CDS |
| TTCTTTCGAGAACAGATGTT+TGG | 0.401374 | 1:-36800503 | None:intergenic |
| TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 1:-36800477 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 1:+36801715 | MsG0180002327.01.T01:CDS |
| GGAATCAGACGTTTGATGTA+TGG | 0.438429 | 1:+36801388 | MsG0180002327.01.T01:CDS |
| TTTCTTCCAGATGCCAAAGA+TGG | 0.449891 | 1:+36801572 | MsG0180002327.01.T01:intron |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 1:-36800755 | None:intergenic |
| GTTAAGCTATCAACCGATCT+TGG | 0.459359 | 1:-36801324 | None:intergenic |
| GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 1:+36801598 | MsG0180002327.01.T01:CDS |
| AGATGGACTGTTAGCATTGG+TGG | 0.461266 | 1:+36801589 | MsG0180002327.01.T01:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 1:+36801869 | MsG0180002327.01.T01:CDS |
| TGACTGAGCTTCCATTCAAA+AGG | 0.469619 | 1:-36801434 | None:intergenic |
| CAGACGCCGCTTTCACTGGC+GGG | 0.477109 | 1:+36800692 | MsG0180002327.01.T01:CDS |
| TCTCTAATCAGAAATAAGAA+AGG | 0.483189 | 1:-36801938 | None:intergenic |
| CAATGATACTTAGCACAACT+TGG | 0.487762 | 1:-36800561 | None:intergenic |
| GACGTTTGATGTATGGAAAA+CGG | 0.491740 | 1:+36801395 | MsG0180002327.01.T01:CDS |
| CATCCCCTCGGTAGTCATGA+AGG | 0.493267 | 1:-36801463 | None:intergenic |
| AGACTATCGTGTAGTAAGTC+AGG | 0.494602 | 1:-36801629 | None:intergenic |
| CTGATTAGAGAAGATTCGAC+TGG | 0.501644 | 1:+36801950 | MsG0180002327.01.T01:CDS |
| TATCATTGCGGCTGGCTCTG+AGG | 0.502501 | 1:+36800576 | MsG0180002327.01.T01:CDS |
| CTCTGTTGATTTCATAACCA+AGG | 0.503875 | 1:+36800816 | MsG0180002327.01.T01:CDS |
| ATCATTGCGGCTGGCTCTGA+GGG | 0.505022 | 1:+36800577 | MsG0180002327.01.T01:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.505591 | 1:+36801367 | MsG0180002327.01.T01:CDS |
| TCATCTACTTCTACTTCAGC+AGG | 0.509971 | 1:-36801656 | None:intergenic |
| CTCTAATCAGAAATAAGAAA+GGG | 0.516757 | 1:-36801937 | None:intergenic |
| AGAACTTCTTCCTCCAAGAT+CGG | 0.523770 | 1:+36801311 | MsG0180002327.01.T01:CDS |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 1:-36801755 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 1:-36801975 | None:intergenic |
| TTTGGTTGGTGATTGATTCG+TGG | 0.536866 | 1:-36800459 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 1:-36802004 | None:intergenic |
| TCAGACGCCGCTTTCACTGG+CGG | 0.550246 | 1:+36800691 | MsG0180002327.01.T01:CDS |
| GCGAGGCCCGCCAGTGAAAG+CGG | 0.556128 | 1:-36800698 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 1:-36801811 | None:intergenic |
| GTGCTAAGTATCATTGCGGC+TGG | 0.566527 | 1:+36800568 | MsG0180002327.01.T01:CDS |
| GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 1:-36800473 | None:intergenic |
| AAGCTATCAACCGATCTTGG+AGG | 0.570822 | 1:-36801321 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 1:+36800475 | MsG0180002327.01.T01:CDS |
| GGCGAGGTTGTTGAGATCAT+CGG | 0.582316 | 1:-36800644 | None:intergenic |
| ATGAATAAACTGCATCCCCT+CGG | 0.585021 | 1:-36801475 | None:intergenic |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 1:-36800602 | None:intergenic |
| TGCATTAGCAAAGATGAGGC+GGG | 0.588872 | 1:-36801346 | None:intergenic |
| TTTGAATGGAAGCTCAGTCA+AGG | 0.589562 | 1:+36801437 | MsG0180002327.01.T01:CDS |
| AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 1:+36800480 | MsG0180002327.01.T01:CDS |
| ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 1:-36800492 | None:intergenic |
| CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 1:-36800491 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 1:-36800601 | None:intergenic |
| GACGATAGAAACAAGGTGAG+AGG | 0.606218 | 1:-36800665 | None:intergenic |
| AGCACAACTTGGAGCAACAA+TGG | 0.608333 | 1:-36800550 | None:intergenic |
| ATCCCCTCGGTAGTCATGAA+GGG | 0.614506 | 1:-36801462 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 1:+36801727 | MsG0180002327.01.T01:CDS |
| CTGAGAGGACGATAGAAACA+AGG | 0.615824 | 1:-36800672 | None:intergenic |
| GTGCATTAGCAAAGATGAGG+CGG | 0.619571 | 1:-36801347 | None:intergenic |
| GATCATCGGTGGATTTGGAA+CGG | 0.619697 | 1:-36800630 | None:intergenic |
| CAGTGAAAGCGGCGTCTGAG+AGG | 0.622496 | 1:-36800687 | None:intergenic |
| GTTCCCTTCATGACTACCGA+GGG | 0.628600 | 1:+36801459 | MsG0180002327.01.T01:CDS |
| TAATCAGAAATAAGAAAGGG+TGG | 0.640706 | 1:-36801934 | None:intergenic |
| AGAGTGCATTAGCAAAGATG+AGG | 0.641780 | 1:-36801350 | None:intergenic |
| CAAAGATGGACTGTTAGCAT+TGG | 0.645848 | 1:+36801586 | MsG0180002327.01.T01:CDS |
| CATCGGTGGATTTGGAACGG+AGG | 0.663201 | 1:-36800627 | None:intergenic |
| GAGGTTGTTGAGATCATCGG+TGG | 0.666044 | 1:-36800641 | None:intergenic |
| TAGAAACAAGGTGAGAGGCG+AGG | 0.684792 | 1:-36800660 | None:intergenic |
| GGTTCCCTTCATGACTACCG+AGG | 0.692485 | 1:+36801458 | MsG0180002327.01.T01:CDS |
| CTTGGTTATGAAATCAACAG+AGG | 0.695380 | 1:-36800815 | None:intergenic |
| ATACACCATCAACAAAAGAG+AGG | 0.697514 | 1:-36800720 | None:intergenic |
| CCATCAACAAAAGAGAGGCG+AGG | 0.704628 | 1:-36800715 | None:intergenic |
| AGTTGTGCTAAGTATCATTG+CGG | 0.711501 | 1:+36800564 | MsG0180002327.01.T01:CDS |
| TTCCCTTCATGACTACCGAG+GGG | 0.739663 | 1:+36801460 | MsG0180002327.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTAAATTAATTTA+AGG | + | Chr1:36800935-36800954 | MsG0180002327.01.T01:intron | 10.0% |
| !! | TTTCATGTAAATTAATTTAA+GGG | + | Chr1:36800936-36800955 | MsG0180002327.01.T01:intron | 10.0% |
| !!! | TGTTTTTATTTTATTTTTGA+TGG | - | Chr1:36800901-36800920 | None:intergenic | 10.0% |
| !! | AAAAAAAATCTATAGTACTA+AGG | + | Chr1:36801058-36801077 | MsG0180002327.01.T01:intron | 15.0% |
| !! | AATTTACATGAAATAAAAAC+AGG | - | Chr1:36800929-36800948 | None:intergenic | 15.0% |
| !! | GTGAAAAAAACAAAAAAAAA+GGG | - | Chr1:36800858-36800877 | None:intergenic | 15.0% |
| !! | TGTGAAAAAAACAAAAAAAA+AGG | - | Chr1:36800859-36800878 | None:intergenic | 15.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | + | Chr1:36801218-36801237 | MsG0180002327.01.T01:intron | 15.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | Chr1:36801814-36801833 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | + | Chr1:36801260-36801279 | MsG0180002327.01.T01:CDS | 20.0% |
| !! | GTGAAAATTAAACCAATAAA+AGG | + | Chr1:36801142-36801161 | MsG0180002327.01.T01:intron | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | + | Chr1:36801259-36801278 | MsG0180002327.01.T01:CDS | 20.0% |
| !! | TTCATTGAAGTAAATGAAAA+AGG | + | Chr1:36801842-36801861 | MsG0180002327.01.T01:CDS | 20.0% |
| !!! | AACATAAGAAAACCTTTTAT+TGG | - | Chr1:36801157-36801176 | None:intergenic | 20.0% |
| !!! | ACTATAGATTTTTTTTGAAG+AGG | - | Chr1:36801054-36801073 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | Chr1:36801692-36801711 | None:intergenic | 20.0% |
| ! | CTCTAATCAGAAATAAGAAA+GGG | - | Chr1:36801940-36801959 | None:intergenic | 25.0% |
| ! | CTTTGTCTTCTTTATAAGAA+AGG | + | Chr1:36801519-36801538 | MsG0180002327.01.T01:intron | 25.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | Chr1:36800797-36800816 | None:intergenic | 25.0% |
| ! | TCTCTAATCAGAAATAAGAA+AGG | - | Chr1:36801941-36801960 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | - | Chr1:36801100-36801119 | None:intergenic | 25.0% |
| ! | TTCCTTAATCAATGTAGAAT+TGG | - | Chr1:36800990-36801009 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | - | Chr1:36801101-36801120 | None:intergenic | 25.0% |
| !! | TACCAATTCTACATTGATTA+AGG | + | Chr1:36800985-36801004 | MsG0180002327.01.T01:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | Chr1:36801423-36801442 | MsG0180002327.01.T01:CDS | 25.0% |
| CAATGTAGAATTGGTATACT+AGG | - | Chr1:36800981-36801000 | None:intergenic | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | Chr1:36801305-36801324 | None:intergenic | 30.0% | |
| TAATCAGAAATAAGAAAGGG+TGG | - | Chr1:36801937-36801956 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | Chr1:36801715-36801734 | MsG0180002327.01.T01:CDS | 30.0% | |
| AACCAAACAAATGTTTCCCT+CGG | + | Chr1:36800475-36800494 | MsG0180002327.01.T01:CDS | 35.0% | |
| AGTTGTGCTAAGTATCATTG+CGG | + | Chr1:36800564-36800583 | MsG0180002327.01.T01:CDS | 35.0% | |
| ATACACCATCAACAAAAGAG+AGG | - | Chr1:36800723-36800742 | None:intergenic | 35.0% | |
| CAATGATACTTAGCACAACT+TGG | - | Chr1:36800564-36800583 | None:intergenic | 35.0% | |
| CTTGGTTATGAAATCAACAG+AGG | - | Chr1:36800818-36800837 | None:intergenic | 35.0% | |
| GACGTTTGATGTATGGAAAA+CGG | + | Chr1:36801395-36801414 | MsG0180002327.01.T01:CDS | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | Chr1:36801360-36801379 | MsG0180002327.01.T01:CDS | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | Chr1:36801722-36801741 | MsG0180002327.01.T01:CDS | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | Chr1:36801097-36801116 | None:intergenic | 35.0% | |
| TTCTTTCGAGAACAGATGTT+TGG | - | Chr1:36800506-36800525 | None:intergenic | 35.0% | |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | Chr1:36800776-36800795 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | - | Chr1:36801027-36801046 | None:intergenic | 35.0% |
| !! | CTCTGTTGATTTCATAACCA+AGG | + | Chr1:36800816-36800835 | MsG0180002327.01.T01:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | Chr1:36800772-36800791 | None:intergenic | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | + | Chr1:36800723-36800742 | MsG0180002327.01.T01:CDS | 35.0% |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | + | Chr1:36800722-36800741 | MsG0180002327.01.T01:CDS | 35.0% |
| ACTGGAACCATTCTCTTTGT+TGG | + | Chr1:36801968-36801987 | MsG0180002327.01.T01:CDS | 40.0% | |
| AGAACTTCTTCCTCCAAGAT+CGG | + | Chr1:36801311-36801330 | MsG0180002327.01.T01:CDS | 40.0% | |
| AGACTATCGTGTAGTAAGTC+AGG | - | Chr1:36801632-36801651 | None:intergenic | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | - | Chr1:36801353-36801372 | None:intergenic | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | - | Chr1:36801478-36801497 | None:intergenic | 40.0% | |
| CAATGCTAACAGTCCATCTT+TGG | - | Chr1:36801588-36801607 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | Chr1:36801978-36801997 | None:intergenic | 40.0% | |
| CTGATTAGAGAAGATTCGAC+TGG | + | Chr1:36801950-36801969 | MsG0180002327.01.T01:CDS | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | Chr1:36800758-36800777 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | Chr1:36800476-36800495 | None:intergenic | 40.0% | |
| GGAATCAGACGTTTGATGTA+TGG | + | Chr1:36801388-36801407 | MsG0180002327.01.T01:CDS | 40.0% | |
| GTTAAGCTATCAACCGATCT+TGG | - | Chr1:36801327-36801346 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | Chr1:36801727-36801746 | MsG0180002327.01.T01:CDS | 40.0% | |
| TCATCTACTTCTACTTCAGC+AGG | - | Chr1:36801659-36801678 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | Chr1:36801763-36801782 | MsG0180002327.01.T01:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | Chr1:36800759-36800778 | None:intergenic | 40.0% | |
| TGACTGAGCTTCCATTCAAA+AGG | - | Chr1:36801437-36801456 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | Chr1:36801766-36801785 | MsG0180002327.01.T01:CDS | 40.0% | |
| TTTCTTCCAGATGCCAAAGA+TGG | + | Chr1:36801572-36801591 | MsG0180002327.01.T01:intron | 40.0% | |
| TTTGAATGGAAGCTCAGTCA+AGG | + | Chr1:36801437-36801456 | MsG0180002327.01.T01:CDS | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | Chr1:36801367-36801386 | MsG0180002327.01.T01:CDS | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | Chr1:36801767-36801786 | None:intergenic | 40.0% |
| !! | CAAAGATGGACTGTTAGCAT+TGG | + | Chr1:36801586-36801605 | MsG0180002327.01.T01:CDS | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+TGG | - | Chr1:36800462-36800481 | None:intergenic | 40.0% |
| AACAAATGTTTCCCTCGGCA+TGG | + | Chr1:36800480-36800499 | MsG0180002327.01.T01:CDS | 45.0% | |
| AACAGTCCATCTTTGGCATC+TGG | - | Chr1:36801581-36801600 | None:intergenic | 45.0% | |
| AAGCTATCAACCGATCTTGG+AGG | - | Chr1:36801324-36801343 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGCAACAA+TGG | - | Chr1:36800553-36800572 | None:intergenic | 45.0% | |
| CTGAGAGGACGATAGAAACA+AGG | - | Chr1:36800675-36800694 | None:intergenic | 45.0% | |
| GACGATAGAAACAAGGTGAG+AGG | - | Chr1:36800668-36800687 | None:intergenic | 45.0% | |
| GAGCTGTGTAACACAAACCT+TGG | - | Chr1:36800836-36800855 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | - | Chr1:36801350-36801369 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | Chr1:36800604-36800623 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | - | Chr1:36801349-36801368 | None:intergenic | 45.0% | |
| TGCCGAGGGAAACATTTGTT+TGG | - | Chr1:36800480-36800499 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | Chr1:36801279-36801298 | MsG0180002327.01.T01:CDS | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | - | Chr1:36801016-36801035 | None:intergenic | 45.0% | |
| ! | GATCATCGGTGGATTTGGAA+CGG | - | Chr1:36800633-36800652 | None:intergenic | 45.0% |
| ! | GTTGAGATCATCGGTGGATT+TGG | - | Chr1:36800638-36800657 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | Chr1:36801749-36801768 | MsG0180002327.01.T01:CDS | 45.0% |
| !! | AGATGGACTGTTAGCATTGG+TGG | + | Chr1:36801589-36801608 | MsG0180002327.01.T01:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | Chr1:36801746-36801765 | MsG0180002327.01.T01:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | + | Chr1:36801598-36801617 | MsG0180002327.01.T01:CDS | 45.0% |
| ATCCCCTCGGTAGTCATGAA+GGG | - | Chr1:36801465-36801484 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | - | Chr1:36800718-36800737 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATCATCGG+TGG | - | Chr1:36800644-36800663 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+CGG | - | Chr1:36800647-36800666 | None:intergenic | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | Chr1:36801758-36801777 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | Chr1:36800605-36800624 | None:intergenic | 50.0% | |
| GTGCTAAGTATCATTGCGGC+TGG | + | Chr1:36800568-36800587 | MsG0180002327.01.T01:CDS | 50.0% | |
| GTTCCCTTCATGACTACCGA+GGG | + | Chr1:36801459-36801478 | MsG0180002327.01.T01:CDS | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | - | Chr1:36800663-36800682 | None:intergenic | 50.0% | |
| TTCCCTTCATGACTACCGAG+GGG | + | Chr1:36801460-36801479 | MsG0180002327.01.T01:CDS | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | + | Chr1:36800715-36800734 | MsG0180002327.01.T01:CDS | 50.0% |
| ACAGATGTTTGGCCATGCCG+AGG | - | Chr1:36800495-36800514 | None:intergenic | 55.0% | |
| CAGATGTTTGGCCATGCCGA+GGG | - | Chr1:36800494-36800513 | None:intergenic | 55.0% | |
| CATCCCCTCGGTAGTCATGA+AGG | - | Chr1:36801466-36801485 | None:intergenic | 55.0% | |
| GGTTCCCTTCATGACTACCG+AGG | + | Chr1:36801458-36801477 | MsG0180002327.01.T01:CDS | 55.0% | |
| ! | CATCGGTGGATTTGGAACGG+AGG | - | Chr1:36800630-36800649 | None:intergenic | 55.0% |
| !! | ATCATTGCGGCTGGCTCTGA+GGG | + | Chr1:36800577-36800596 | MsG0180002327.01.T01:CDS | 55.0% |
| !! | TATCATTGCGGCTGGCTCTG+AGG | + | Chr1:36800576-36800595 | MsG0180002327.01.T01:CDS | 55.0% |
| CAGTGAAAGCGGCGTCTGAG+AGG | - | Chr1:36800690-36800709 | None:intergenic | 60.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | Chr1:36801869-36801888 | MsG0180002327.01.T01:CDS | 60.0% | |
| ! | CTCTCAGACGCCGCTTTCAC+TGG | + | Chr1:36800688-36800707 | MsG0180002327.01.T01:CDS | 60.0% |
| ! | TCAGACGCCGCTTTCACTGG+CGG | + | Chr1:36800691-36800710 | MsG0180002327.01.T01:CDS | 60.0% |
| ! | CAGACGCCGCTTTCACTGGC+GGG | + | Chr1:36800692-36800711 | MsG0180002327.01.T01:CDS | 65.0% |
| GCGAGGCCCGCCAGTGAAAG+CGG | - | Chr1:36800701-36800720 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 36800427 | 36802018 | 36800427 | ID=MsG0180002327.01;Name=MsG0180002327.01 |
| Chr1 | mRNA | 36800427 | 36802018 | 36800427 | ID=MsG0180002327.01.T01;Parent=MsG0180002327.01;Name=MsG0180002327.01.T01;_AED=0.30;_eAED=0.30;_QI=0|0|0|1|1|1|3|0|373 |
| Chr1 | exon | 36800427 | 36800837 | 36800427 | ID=MsG0180002327.01.T01:exon:1078;Parent=MsG0180002327.01.T01 |
| Chr1 | exon | 36801249 | 36801522 | 36801249 | ID=MsG0180002327.01.T01:exon:1079;Parent=MsG0180002327.01.T01 |
| Chr1 | exon | 36801582 | 36802018 | 36801582 | ID=MsG0180002327.01.T01:exon:1080;Parent=MsG0180002327.01.T01 |
| Chr1 | CDS | 36800427 | 36800837 | 36800427 | ID=MsG0180002327.01.T01:cds;Parent=MsG0180002327.01.T01 |
| Chr1 | CDS | 36801249 | 36801522 | 36801249 | ID=MsG0180002327.01.T01:cds;Parent=MsG0180002327.01.T01 |
| Chr1 | CDS | 36801582 | 36802018 | 36801582 | ID=MsG0180002327.01.T01:cds;Parent=MsG0180002327.01.T01 |
| Gene Sequence |
| Protein sequence |
