AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012215.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012215.01.T01 MTR_3g018740 80.829 386 71 1 237 619 3 388 0.0 609
MsG0380012215.01.T01 MTR_3g101010 71.244 386 105 2 237 617 3 387 2.58e-180 516
MsG0380012215.01.T01 MTR_8g027395 66.667 393 125 4 229 617 5 395 2.60e-176 506
MsG0380012215.01.T01 MTR_2g045980 67.179 390 117 5 237 619 3 388 1.34e-173 498
MsG0380012215.01.T01 MTR_2g046030 66.154 390 121 4 237 619 3 388 9.77e-172 494
MsG0380012215.01.T01 MTR_4g045707 65.535 383 128 2 238 617 5 386 2.59e-170 490
MsG0380012215.01.T01 MTR_3g101180 64.051 395 124 6 239 617 6 398 6.67e-167 482
MsG0380012215.01.T01 MTR_8g027420 66.319 383 114 4 237 617 4 373 2.38e-166 479
MsG0380012215.01.T01 MTR_7g050810 60.500 400 145 4 231 618 5 403 4.18e-163 472
MsG0380012215.01.T01 MTR_7g451890 59.900 399 150 3 229 618 4 401 9.10e-163 471
MsG0380012215.01.T01 MTR_3g101030 63.728 397 118 5 244 617 34 427 9.45e-163 473
MsG0380012215.01.T01 MTR_8g461160 64.103 390 130 4 239 619 6 394 1.15e-162 471
MsG0380012215.01.T01 MTR_3g048000 62.730 381 121 4 240 617 28 390 2.47e-161 468
MsG0380012215.01.T01 MTR_7g047780 60.652 399 147 4 229 618 4 401 9.34e-161 466
MsG0380012215.01.T01 MTR_4g088535 65.796 383 111 5 234 614 2 366 1.83e-159 462
MsG0380012215.01.T01 MTR_3g101130 61.598 388 136 4 238 617 5 387 3.76e-157 457
MsG0380012215.01.T01 MTR_7g050750 59.694 392 148 4 236 618 5 395 7.06e-156 454
MsG0380012215.01.T01 MTR_4g088525 64.266 361 127 2 258 617 8 367 1.90e-154 449
MsG0380012215.01.T01 MTR_3g015620 61.440 389 116 4 239 618 16 379 2.35e-148 434
MsG0380012215.01.T01 MTR_3g101050 63.874 382 113 7 243 617 33 396 7.76e-144 423
MsG0380012215.01.T01 MTR_3g102920 56.992 379 119 6 247 617 66 408 8.78e-128 382
MsG0380012215.01.T01 MTR_3g101190 55.091 383 95 6 237 617 3 310 4.91e-125 372
MsG0380012215.01.T01 MTR_3g018747 71.264 261 57 2 363 619 9 255 3.36e-118 352
MsG0380012215.01.T01 MTR_3g101200 51.899 395 155 5 231 617 23 390 1.63e-117 355
MsG0380012215.01.T01 MTR_7g050830 52.923 325 120 3 229 531 6 319 2.31e-108 329
MsG0380012215.01.T01 MTR_3g100995 64.822 253 82 2 370 618 14 263 1.63e-106 322
MsG0380012215.01.T01 MTR_3g100010 55.449 312 91 3 262 540 40 336 6.30e-101 311
MsG0380012215.01.T01 MTR_3g015760 61.011 277 98 3 348 618 8 280 1.63e-99 305
MsG0380012215.01.T01 MTR_3g111160 67.143 210 66 1 411 617 9 218 8.82e-86 267
MsG0380012215.01.T01 MTR_3g114310 41.582 392 210 11 240 616 20 407 4.31e-81 262
MsG0380012215.01.T01 MTR_3g101110 58.898 236 63 3 366 593 71 280 9.50e-79 251
MsG0380012215.01.T01 MTR_3g100520 61.111 216 73 3 404 617 1 207 1.18e-78 248
MsG0380012215.01.T01 MTR_2g046410 58.824 238 79 5 389 619 124 349 4.20e-77 249
MsG0380012215.01.T01 MTR_3g099970 60.406 197 60 3 363 559 20 198 1.11e-69 224
MsG0380012215.01.T01 MTR_3g111150 62.500 176 42 1 241 416 1 152 1.49e-65 212
MsG0380012215.01.T01 MTR_3g101150 65.190 158 45 2 469 617 1 157 3.01e-59 195
MsG0380012215.01.T01 MTR_3g102870 59.146 164 57 2 426 580 1 163 2.89e-53 180
MsG0380012215.01.T01 MTR_3g101020 53.226 186 56 2 437 618 1 159 2.99e-50 171
MsG0380012215.01.T01 MTR_3g100990 72.800 125 34 0 239 363 5 129 8.53e-50 181
MsG0380012215.01.T01 MTR_4g093550 64.773 88 31 0 235 322 2 89 2.53e-26 103
MsG0380012215.01.T01 MTR_4g058660 31.016 187 122 3 1 181 27 212 1.96e-25 107
MsG0380012215.01.T01 MTR_7g451880 31.016 187 122 3 1 181 28 213 2.33e-25 107
MsG0380012215.01.T01 MTR_8g446640 31.016 187 122 3 1 181 8 193 3.41e-25 106
MsG0380012215.01.T01 MTR_1g023370 31.016 187 122 3 1 181 27 212 3.68e-25 106
MsG0380012215.01.T01 MTR_7g024060 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_6g087820 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_5g081190 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_5g091480 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_5g056290 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_3g031190 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_2g005490 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_2g010570 31.016 187 122 3 1 181 27 212 3.96e-25 107
MsG0380012215.01.T01 MTR_5g030110 31.016 187 122 3 1 181 27 212 4.11e-25 107
MsG0380012215.01.T01 MTR_2g007410 31.016 187 122 3 1 181 27 212 4.11e-25 107
MsG0380012215.01.T01 MTR_3g015660 30.481 187 123 3 1 181 27 212 9.68e-25 103
MsG0380012215.01.T01 MTR_7g110100 31.016 187 122 3 1 181 27 212 1.36e-24 108
MsG0380012215.01.T01 MTR_3g452170 30.481 187 123 3 1 181 27 212 4.24e-24 106
MsG0380012215.01.T01 MTR_7g074180 29.947 187 124 3 1 181 27 212 4.28e-24 103
MsG0380012215.01.T01 MTR_1g105785 31.383 188 122 3 1 182 27 213 4.66e-23 103
MsG0380012215.01.T01 MTR_2g010270 29.231 195 124 3 1 181 8 202 4.76e-23 100
MsG0380012215.01.T01 MTR_3g056240 29.437 231 144 4 1 212 27 257 9.02e-23 100
MsG0380012215.01.T01 MTR_8g062030 29.787 188 128 1 1 184 27 214 2.67e-22 101
MsG0380012215.01.T01 MTR_1g082860 29.412 187 116 3 1 181 27 203 2.94e-22 97.4
MsG0380012215.01.T01 MTR_3g056270 31.551 187 124 2 1 183 27 213 2.67e-21 99.0
MsG0380012215.01.T01 MTR_3g056270 31.902 163 107 2 24 182 209 371 4.76e-16 82.4
MsG0380012215.01.T01 MTR_1g011490 28.877 187 117 3 1 181 27 203 4.14e-21 95.1
MsG0380012215.01.T01 MTR_4g036240 30.645 186 125 2 1 182 27 212 1.30e-20 96.3
MsG0380012215.01.T01 MTR_1g052715 30.645 186 114 5 18 196 3 180 7.51e-20 91.7
MsG0380012215.01.T01 MTR_6g052340 29.843 191 121 3 1 184 29 213 7.90e-20 94.4
MsG0380012215.01.T01 MTR_8g463820 27.568 185 123 2 2 185 28 202 1.41e-19 89.7
MsG0380012215.01.T01 MTR_6g039240 27.568 185 123 2 2 185 28 202 2.40e-19 89.4
MsG0380012215.01.T01 MTR_1g094230 27.568 185 123 2 2 185 28 202 2.83e-19 89.4
MsG0380012215.01.T01 MTR_6g046890 63.014 73 22 1 258 325 18 90 7.43e-19 83.6
MsG0380012215.01.T01 MTR_5g078250 26.316 190 136 1 1 186 27 216 7.77e-19 90.5
MsG0380012215.01.T01 MTR_8g005940 30.128 156 103 2 1 151 27 181 1.39e-18 87.0
MsG0380012215.01.T01 MTR_7g089660 27.473 182 121 2 2 182 28 199 1.98e-18 85.5
MsG0380012215.01.T01 MTR_5g045850 31.013 158 102 3 25 176 36 192 2.40e-18 86.3
MsG0380012215.01.T01 MTR_3g101140 60.811 74 22 2 550 617 42 114 1.14e-17 79.7
MsG0380012215.01.T01 MTR_8g088810 28.191 188 131 1 2 185 28 215 6.12e-17 82.4
MsG0380012215.01.T01 MTR_7g051400 28.415 183 129 2 1 182 27 208 1.32e-16 83.6
MsG0380012215.01.T01 MTR_8g479260 28.042 189 130 3 1 184 29 216 1.49e-16 83.6
MsG0380012215.01.T01 MTR_2g008650 28.042 189 130 3 1 184 29 216 1.69e-16 83.2
MsG0380012215.01.T01 MTR_8g465040 31.081 148 97 3 1 146 27 171 1.80e-16 77.8
MsG0380012215.01.T01 MTR_2g062200 28.402 169 117 1 18 182 1 169 5.51e-16 77.0
MsG0380012215.01.T01 MTR_2g048560 27.807 187 129 3 1 182 27 212 6.25e-16 81.6
MsG0380012215.01.T01 MTR_2g054710 26.064 188 135 1 1 184 29 216 1.11e-15 78.2
MsG0380012215.01.T01 MTR_1g075850 24.737 190 133 2 1 186 27 210 1.48e-15 80.1
MsG0380012215.01.T01 MTR_7g096440 28.743 167 112 3 26 186 5 170 2.87e-15 76.6
MsG0380012215.01.T01 MTR_8g446750 61.404 57 14 1 143 199 13 61 1.28e-14 71.2
MsG0380012215.01.T01 MTR_5g055160 28.125 128 92 0 2 129 28 155 2.01e-14 74.3
MsG0380012215.01.T01 MTR_2g450060 29.714 175 118 3 10 179 36 210 2.98e-14 76.3
MsG0380012215.01.T01 MTR_3g044760 26.404 178 126 2 1 177 27 200 3.18e-14 75.9
MsG0380012215.01.T01 MTR_5g085220 27.586 145 105 0 2 146 28 172 3.51e-14 71.2
MsG0380012215.01.T01 MTR_4g028320 28.169 142 102 0 2 143 9 150 3.89e-14 70.9
MsG0380012215.01.T01 MTR_6g045290 32.515 163 105 3 22 179 302 464 3.93e-14 75.5
MsG0380012215.01.T01 MTR_4g471610 27.465 142 103 0 2 143 28 169 5.01e-14 70.9
MsG0380012215.01.T01 MTR_3g078440 27.465 142 103 0 2 143 28 169 5.01e-14 70.9
MsG0380012215.01.T01 MTR_8g036090 27.465 142 103 0 2 143 28 169 5.01e-14 70.9
MsG0380012215.01.T01 MTR_7g045450 26.543 162 113 2 1 157 27 187 5.86e-14 72.8
MsG0380012215.01.T01 MTR_6g073570 26.543 162 113 2 1 157 27 187 5.86e-14 72.8
MsG0380012215.01.T01 MTR_1g036740 27.465 142 103 0 2 143 28 169 7.21e-14 70.5
MsG0380012215.01.T01 MTR_8g096680 27.465 142 103 0 2 143 28 169 7.21e-14 70.5
MsG0380012215.01.T01 MTR_3g084550 28.906 128 91 0 16 143 1 128 2.19e-13 67.8
MsG0380012215.01.T01 MTR_6g465570 29.452 146 102 1 1 146 23 167 2.20e-13 68.9
MsG0380012215.01.T01 MTR_1g072220 29.688 128 90 0 16 143 1 128 3.02e-13 67.4
MsG0380012215.01.T01 MTR_0105s0080 26.203 187 106 5 1 181 8 168 3.32e-13 70.5
MsG0380012215.01.T01 MTR_5g053590 29.121 182 123 3 1 179 27 205 4.28e-13 72.4
MsG0380012215.01.T01 MTR_3g116750 26.761 142 104 0 2 143 28 169 5.73e-13 67.8
MsG0380012215.01.T01 MTR_3g095950 26.761 142 104 0 2 143 28 169 5.78e-13 67.8
MsG0380012215.01.T01 MTR_5g004860 29.121 182 110 4 10 179 32 206 6.18e-13 72.0
MsG0380012215.01.T01 MTR_5g019960 28.049 164 109 5 25 181 57 218 1.29e-12 68.6
MsG0380012215.01.T01 MTR_7g025160 31.461 178 114 4 10 179 42 219 2.95e-12 67.4
MsG0380012215.01.T01 MTR_7g051840 27.907 129 89 1 18 146 1 125 3.07e-12 64.3
MsG0380012215.01.T01 MTR_1g043690 30.493 223 128 10 2 204 25 240 4.24e-12 69.7
MsG0380012215.01.T01 MTR_3g055660 27.108 166 118 2 12 174 63 228 9.12e-12 68.2
MsG0380012215.01.T01 MTR_4g036240 31.538 130 85 2 57 182 3 132 9.22e-12 68.2
MsG0380012215.01.T01 MTR_7g093810 26.056 142 105 0 2 143 28 169 9.22e-12 64.3
MsG0380012215.01.T01 MTR_4g014890 27.108 166 118 2 12 174 63 228 1.00e-11 68.2
MsG0380012215.01.T01 MTR_6g055250 32.948 173 102 7 18 179 1 170 1.63e-11 67.0
MsG0380012215.01.T01 MTR_2g099880 29.457 129 91 0 15 143 6 134 2.09e-11 62.4
MsG0380012215.01.T01 MTR_6g051890 26.429 140 103 0 1 140 31 170 6.84e-11 65.1
MsG0380012215.01.T01 MTR_6g013455 26.506 166 102 2 20 185 40 185 8.19e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012215.01.T01 AT1G47710 51.804 388 180 3 237 617 3 390 5.31e-137 405
MsG0380012215.01.T01 AT1G47710 51.804 388 180 3 237 617 30 417 2.27e-136 405
MsG0380012215.01.T01 AT3G45220 47.692 390 192 5 237 616 3 390 1.74e-119 360
MsG0380012215.01.T01 AT2G25240 48.187 386 188 6 237 616 3 382 7.88e-113 343
MsG0380012215.01.T01 AT2G26390 47.462 394 183 7 237 616 3 386 1.24e-111 340
MsG0380012215.01.T01 AT1G64030 42.199 391 193 6 237 616 3 371 9.64e-92 288
MsG0380012215.01.T01 AT2G14540 41.814 397 198 7 230 616 24 397 1.30e-91 289
MsG0380012215.01.T01 AT2G35580 42.455 391 192 8 237 616 3 371 2.52e-88 279
MsG0380012215.01.T01 AT1G62170 40.816 392 196 7 237 616 64 431 5.54e-88 280
MsG0380012215.01.T01 AT1G62170 37.647 425 196 8 237 616 64 464 5.82e-81 263
MsG0380012215.01.T01 AT1G64010 42.857 217 98 4 404 616 1 195 5.60e-49 169
MsG0380012215.01.T01 AT1G64010 43.069 202 89 4 419 616 2 181 1.58e-43 154
MsG0380012215.01.T01 AT1G62160 41.243 177 81 7 443 616 62 218 8.21e-29 114
MsG0380012215.01.T01 AT1G63280 47.458 118 58 2 360 475 5 120 6.45e-27 106
MsG0380012215.01.T01 AT1G51330 46.903 113 55 2 361 469 29 140 3.01e-22 95.1
MsG0380012215.01.T01 AT1G64020 32.143 112 73 3 244 353 10 120 2.40e-12 64.7

Find 122 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCCTTCTGTCTTTAAAT+AGG 0.176010 3:-12850537 None:intergenic
GAATATGCAAATCAACTTAT+TGG 0.215182 3:+12849415 MsG0380012215.01.T01:CDS
TGATTAAAGAAGTGAATTTA+TGG 0.223064 3:+12851438 MsG0380012215.01.T01:CDS
AAAGCCTTAAAATAGGAATT+AGG 0.241053 3:-12850475 None:intergenic
TTGCCTTCTGTCTTTAAATA+GGG 0.247748 3:-12850536 None:intergenic
TTCATTGAAGTAAATGAAAA+AGG 0.248061 3:+12852022 MsG0380012215.01.T01:CDS
CCAGGTTGATTTAATTGATA+TGG 0.251968 3:+12848631 MsG0380012215.01.T01:CDS
AATGAAGATTCACACCTAAT+TGG 0.282930 3:+12849088 MsG0380012215.01.T01:CDS
GAGGAAGAAGTTCTTTAATA+AGG 0.287252 3:-12851481 None:intergenic
GTTGAGATCATCGGTGGATT+TGG 0.293645 3:-12850809 None:intergenic
GCTAAGTTTAAATTATATAA+AGG 0.296017 3:+12849487 MsG0380012215.01.T01:CDS
GGACAAAGTAGATTTATAAT+TGG 0.309459 3:-12850968 None:intergenic
TTAAATCATTAAAACCAATT+AGG 0.322376 3:-12849102 None:intergenic
TGGTCTCTATCTTTAAAGTT+TGG 0.333419 3:-12848611 None:intergenic
GAAACACAGGTGCACACTTT+GGG 0.348715 3:+12849390 MsG0380012215.01.T01:intron
CAATGCTAACAGTCCATCTT+TGG 0.352985 3:-12851765 None:intergenic
ACTGGAACCATTCTCTTTGT+TGG 0.353661 3:+12852148 MsG0380012215.01.T01:CDS
TACCATTAAAGCCTTAAAAT+AGG 0.355482 3:-12850482 None:intergenic
GTGAACTTGAATGCATAAAA+AGG 0.357820 3:-12849037 None:intergenic
GCTAATGCACTCTACTATAA+AGG 0.363822 3:+12851539 MsG0380012215.01.T01:CDS
ATCAAAATAACTGGTACATC+TGG 0.370890 3:-12849454 None:intergenic
TGAAGGAAGGTTGAAGAGAA+AGG 0.378765 3:-12850930 None:intergenic
CTTCGTCTTCTTTATAAGAA+AGG 0.383719 3:+12851698 MsG0380012215.01.T01:CDS
GATTAAAGAAGTGAATTTAT+GGG 0.386003 3:+12851439 MsG0380012215.01.T01:CDS
AATTGCAATATCAAAATAAC+TGG 0.388973 3:-12849463 None:intergenic
TCTCATATGTTGAAGGAGTT+AGG 0.397032 3:+12851902 MsG0380012215.01.T01:CDS
TTCTTTCGAGAACAGATGTT+TGG 0.401374 3:-12850677 None:intergenic
AACAGTCCATCTTTGGCATC+TGG 0.409162 3:-12851758 None:intergenic
TGCCGAGGGAAACATTTGTT+TGG 0.416643 3:-12850651 None:intergenic
TGAAACTTCTCATATGTTGA+AGG 0.426857 3:+12851895 MsG0380012215.01.T01:CDS
ATTGGAGTATTAGCTGCAAA+GGG 0.428178 3:+12849219 MsG0380012215.01.T01:CDS
CAAAATACGATTGCAAAAGA+TGG 0.445258 3:+12850582 MsG0380012215.01.T01:CDS
AGAAACACAGGTGCACACTT+TGG 0.450010 3:+12849389 MsG0380012215.01.T01:intron
GAAGGAAGGTTGAAGAGAAA+GGG 0.450222 3:-12850929 None:intergenic
TTATCAATCTATGTTGGTTG+AGG 0.451541 3:+12848886 MsG0380012215.01.T01:CDS
TTTCTTCCAGATGCCAAAGA+TGG 0.454297 3:+12851752 MsG0380012215.01.T01:CDS
GTTAAGCTATCAACTGATCT+TGG 0.455204 3:-12851503 None:intergenic
GTTAGCATTGGTGGAGAAGT+TGG 0.459448 3:+12851778 MsG0380012215.01.T01:CDS
AGATGGACTGTTAGCATTGG+TGG 0.461266 3:+12851769 MsG0380012215.01.T01:CDS
GAAGCTGCTGCAGCTAGTGC+TGG 0.463886 3:+12852049 MsG0380012215.01.T01:CDS
CTCTCAGACGGAGCTTTCAC+TGG 0.464320 3:+12850862 MsG0380012215.01.T01:CDS
TGACTGAGCTTCCATTCAAA+AGG 0.469619 3:-12851613 None:intergenic
GGAATCAGACATTTGATGTA+AGG 0.469790 3:+12851567 MsG0380012215.01.T01:CDS
CAGACGGAGCTTTCACTGGC+GGG 0.477961 3:+12850866 MsG0380012215.01.T01:CDS
GGAACAATTGAGTCATAAAC+CGG 0.478972 3:-12849016 None:intergenic
TCTCTAATCAGAAATAAGAA+AGG 0.483189 3:-12852118 None:intergenic
GGATATGACCACCGTCGAGC+CGG 0.483382 3:+12848997 MsG0380012215.01.T01:CDS
CATCCCCTCGGTGGTCATGA+AGG 0.485289 3:-12851642 None:intergenic
CAATGATACTTAGCACAACT+TGG 0.487762 3:-12850735 None:intergenic
TATCAATCTATGTTGGTTGA+GGG 0.487874 3:+12848887 MsG0380012215.01.T01:CDS
AGACTATCGTGTAGTAAGTC+AGG 0.494602 3:-12851809 None:intergenic
TGCCTTCTGTCTTTAAATAG+GGG 0.500069 3:-12850535 None:intergenic
CTGATTAGAGAAGATTCGAC+TGG 0.501644 3:+12852130 MsG0380012215.01.T01:CDS
AGTTTATAGTCATGGCAAGT+TGG 0.501861 3:-12848965 None:intergenic
TATCATTGCGGCTGGCTCTG+AGG 0.502501 3:+12850750 MsG0380012215.01.T01:CDS
CTCTGTTGATTTCATAACCA+AGG 0.503875 3:+12850990 MsG0380012215.01.T01:CDS
ATCATTGCGGCTGGCTCTGA+GGG 0.505022 3:+12850751 MsG0380012215.01.T01:CDS
TGCAAATTATCAATCTATGT+TGG 0.506048 3:+12848880 MsG0380012215.01.T01:CDS
TCATCTACTTCTACTTCAGC+AGG 0.509971 3:-12851836 None:intergenic
CACTCTACTATAAAGGAGCA+TGG 0.515652 3:+12851546 MsG0380012215.01.T01:CDS
CTCTAATCAGAAATAAGAAA+GGG 0.516757 3:-12852117 None:intergenic
TATTGGAGTATTAGCTGCAA+AGG 0.517655 3:+12849218 MsG0380012215.01.T01:CDS
TAATGGTATCTGATTTCTTG+CGG 0.519390 3:+12850497 MsG0380012215.01.T01:CDS
AAAATACGATTGCAAAAGAT+GGG 0.523542 3:+12850583 MsG0380012215.01.T01:CDS
GTCAAACCTCCAGGAGTGAA+AGG 0.524050 3:-12851935 None:intergenic
GTTTCTATCGTCCTCTCAGA+CGG 0.525011 3:+12850850 MsG0380012215.01.T01:CDS
ATCTGATTTCTTGCGGCACA+AGG 0.527750 3:+12850504 MsG0380012215.01.T01:CDS
CACTTGTCCAACAAAGAGAA+TGG 0.528533 3:-12852155 None:intergenic
TTTGGTTGGTGATTGATTCG+TGG 0.536866 3:-12850633 None:intergenic
ATCAATAAACTGCATCCCCT+CGG 0.537857 3:-12851654 None:intergenic
AACCCCTATTTAAAGACAGA+AGG 0.541317 3:+12850533 MsG0380012215.01.T01:CDS
CCATATCAATTAAATCAACC+TGG 0.543950 3:-12848631 None:intergenic
TGCTAAGATCACTGATCAAG+AGG 0.544299 3:-12852184 None:intergenic
GAAATATATTAGAAACAGAA+AGG 0.558448 3:-12851991 None:intergenic
GTGCTAAGTATCATTGCGGC+TGG 0.566527 3:+12850742 MsG0380012215.01.T01:CDS
TCAGACGGAGCTTTCACTGG+CGG 0.567635 3:+12850865 MsG0380012215.01.T01:CDS
AAGCTATCAACTGATCTTGG+AGG 0.569083 3:-12851500 None:intergenic
GAGGGAAACATTTGTTTGGT+TGG 0.569951 3:-12850647 None:intergenic
ATCCCCTCGGTGGTCATGAA+GGG 0.571981 3:-12851641 None:intergenic
AACCAAACAAATGTTTCCCT+CGG 0.575261 3:+12850649 MsG0380012215.01.T01:CDS
GGCGAGGTTGTTGAGATCAT+CGG 0.582316 3:-12850818 None:intergenic
GTCGAGAAGCTGTTGTTGTG+TGG 0.586119 3:-12850776 None:intergenic
TGCATTAGCAAAGATGAGGC+GGG 0.588872 3:-12851525 None:intergenic
TTTGAATGGAAGCTCAGTCA+AGG 0.589562 3:+12851616 MsG0380012215.01.T01:CDS
TGAGTCATAAACCGGCTCGA+CGG 0.589585 3:-12849008 None:intergenic
AACAAATGTTTCCCTCGGCA+TGG 0.592617 3:+12850654 MsG0380012215.01.T01:CDS
ACAGATGTTTGGCCATGCCG+AGG 0.599139 3:-12850666 None:intergenic
CAGATGTTTGGCCATGCCGA+GGG 0.601831 3:-12850665 None:intergenic
GTTCCCTTCATGACCACCGA+GGG 0.602185 3:+12851638 MsG0380012215.01.T01:CDS
TCGAGAAGCTGTTGTTGTGT+GGG 0.605173 3:-12850775 None:intergenic
GACGATAGAAACAAGGTGAG+AGG 0.606218 3:-12850839 None:intergenic
AGCACAACTTGGAGCAACAA+TGG 0.608333 3:-12850724 None:intergenic
GAACTCATAGAATACAAAAG+TGG 0.609917 3:+12849243 MsG0380012215.01.T01:CDS
TGGAGTATTAGCTGCAAAGG+GGG 0.610956 3:+12849221 MsG0380012215.01.T01:CDS
AAACACAGGTGCACACTTTG+GGG 0.614892 3:+12849391 MsG0380012215.01.T01:intron
TATGTTGAAGGAGTTAGGAG+TGG 0.615125 3:+12851907 MsG0380012215.01.T01:CDS
CTGAGAGGACGATAGAAACA+AGG 0.615824 3:-12850846 None:intergenic
GTGCATTAGCAAAGATGAGG+CGG 0.619571 3:-12851526 None:intergenic
GATCATCGGTGGATTTGGAA+CGG 0.619697 3:-12850804 None:intergenic
ACAGAAAGGCTATCACTCAC+AGG 0.624108 3:-12851977 None:intergenic
CAAGATTCAATGTACTGTGT+GGG 0.627513 3:+12848847 MsG0380012215.01.T01:CDS
GTCATAAACCGGCTCGACGG+TGG 0.628521 3:-12849005 None:intergenic
TAATCAGAAATAAGAAAGGG+TGG 0.640706 3:-12852114 None:intergenic
CAGTGAAAGCTCCGTCTGAG+AGG 0.641389 3:-12850861 None:intergenic
AGAGTGCATTAGCAAAGATG+AGG 0.641780 3:-12851529 None:intergenic
TTTAAAGACAGAAGGCAAGA+CGG 0.641992 3:+12850541 MsG0380012215.01.T01:CDS
CAAAGATGGACTGTTAGCAT+TGG 0.645848 3:+12851766 MsG0380012215.01.T01:CDS
GCAAGATTCAATGTACTGTG+TGG 0.652174 3:+12848846 MsG0380012215.01.T01:CDS
CATCGGTGGATTTGGAACGG+AGG 0.663201 3:-12850801 None:intergenic
GAGGTTGTTGAGATCATCGG+TGG 0.666044 3:-12850815 None:intergenic
AATAAACTGCATCCCCTCGG+TGG 0.668287 3:-12851651 None:intergenic
AAACTTTAAAGATAGAGACC+AGG 0.681122 3:+12848613 MsG0380012215.01.T01:CDS
TAGAAACAAGGTGAGAGGCG+AGG 0.684792 3:-12850834 None:intergenic
TCAAGATCATCCAACTCCAG+AGG 0.690020 3:-12849288 None:intergenic
CTTGGTTATGAAATCAACAG+AGG 0.695380 3:-12850989 None:intergenic
TTGGAGTATTAGCTGCAAAG+GGG 0.696159 3:+12849220 MsG0380012215.01.T01:CDS
ATACACCATCAACAAAAGAG+AGG 0.697514 3:-12850894 None:intergenic
AAGATTCAATGTACTGTGTG+GGG 0.702549 3:+12848848 MsG0380012215.01.T01:CDS
CCATCAACAAAAGAGAGGCG+AGG 0.704628 3:-12850889 None:intergenic
AGTTGTGCTAAGTATCATTG+CGG 0.711501 3:+12850738 MsG0380012215.01.T01:CDS
TTCCCTTCATGACCACCGAG+GGG 0.716157 3:+12851639 MsG0380012215.01.T01:CDS
GGTTCCCTTCATGACCACCG+AGG 0.739875 3:+12851637 MsG0380012215.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCATGTAAATTAATTTA+AGG + Chr3:12851109-12851128 MsG0380012215.01.T01:intron 10.0%
!! TTTCATGTAAATTAATTTAA+GGG + Chr3:12851110-12851129 MsG0380012215.01.T01:intron 10.0%
!!! ATAATTTAATTTATTTGAAG+AGG + Chr3:12849361-12849380 MsG0380012215.01.T01:intron 10.0%
!!! TATTATATTTGTTATATTGT+TGG + Chr3:12849864-12849883 MsG0380012215.01.T01:intron 10.0%
!!! TGTTTTTATTTTATTTTTGA+TGG - Chr3:12851075-12851094 None:intergenic 10.0%
!! AATCAAAAATAAAACTTCAA+AGG - Chr3:12850428-12850447 None:intergenic 15.0%
!! ATATTATCATTAATCTTTAC+AGG + Chr3:12848744-12848763 MsG0380012215.01.T01:intron 15.0%
!! ATTATACACTTAAACAAATT+TGG + Chr3:12849739-12849758 MsG0380012215.01.T01:intron 15.0%
!! CAAAACTATAACAAATTAAT+AGG - Chr3:12849143-12849162 None:intergenic 15.0%
!! GCTAAGTTTAAATTATATAA+AGG + Chr3:12849487-12849506 MsG0380012215.01.T01:CDS 15.0%
!! GTGAAAAAAGAAAAAAAAAA+GGG - Chr3:12851032-12851051 None:intergenic 15.0%
!! TAAAAAATAGTTTATAGTCA+TGG - Chr3:12848976-12848995 None:intergenic 15.0%
!! TGTGAAAAAAGAAAAAAAAA+AGG - Chr3:12851033-12851052 None:intergenic 15.0%
!! TTAAATCATTAAAACCAATT+AGG - Chr3:12849105-12849124 None:intergenic 15.0%
!! TTAGTTTATACAAGTTAATA+AGG - Chr3:12848693-12848712 None:intergenic 15.0%
!!! ACATTTTTGTAAGATATTAT+TGG + Chr3:12849201-12849220 MsG0380012215.01.T01:intron 15.0%
!!! ACTGATTTTTAAATTTGATA+TGG + Chr3:12851397-12851416 MsG0380012215.01.T01:intron 15.0%
!!! ATCATATGATGAAATTTTTA+AGG + Chr3:12849060-12849079 MsG0380012215.01.T01:CDS 15.0%
!!! TATATAAGAAAACCTTTTAT+TGG - Chr3:12851332-12851351 None:intergenic 15.0%
!!! TGACTATAAACTATTTTTTA+AGG + Chr3:12848976-12848995 MsG0380012215.01.T01:CDS 15.0%
!! AACTTATTTAATATCTAACC+CGG + Chr3:12849647-12849666 MsG0380012215.01.T01:intron 20.0%
!! AATTGCAATATCAAAATAAC+TGG - Chr3:12849466-12849485 None:intergenic 20.0%
!! ATATCTTACAAAAATGTGAA+AGG - Chr3:12849198-12849217 None:intergenic 20.0%
!! CAAAAAAATCTATAGTACTA+AGG + Chr3:12851231-12851250 MsG0380012215.01.T01:intron 20.0%
!! CCATAAGAATACTATATTTA+AGG + Chr3:12849787-12849806 MsG0380012215.01.T01:intron 20.0%
!! CCTTAAATATAGTATTCTTA+TGG - Chr3:12849790-12849809 None:intergenic 20.0%
!! GAAATATATTAGAAACAGAA+AGG - Chr3:12851994-12852013 None:intergenic 20.0%
!! GATTAAAGAAGTGAATTTAT+GGG + Chr3:12851439-12851458 MsG0380012215.01.T01:CDS 20.0%
!! GTGAAAATTAAACCAATAAA+AGG + Chr3:12851317-12851336 MsG0380012215.01.T01:intron 20.0%
!! TGATTAAAGAAGTGAATTTA+TGG + Chr3:12851438-12851457 MsG0380012215.01.T01:CDS 20.0%
!! TTAAGAATTTAGATTGCATA+TGG - Chr3:12850003-12850022 None:intergenic 20.0%
!! TTAATTTATTTGAAGAGGAA+GGG + Chr3:12849366-12849385 MsG0380012215.01.T01:intron 20.0%
!! TTCATTGAAGTAAATGAAAA+AGG + Chr3:12852022-12852041 MsG0380012215.01.T01:CDS 20.0%
!! TTCTTAAAAAATTCTTGCAT+TGG + Chr3:12849515-12849534 MsG0380012215.01.T01:intron 20.0%
!! TTGTTCTTTCTAATATTCTA+GGG + Chr3:12848821-12848840 MsG0380012215.01.T01:intron 20.0%
!! TTTGTTCTTTCTAATATTCT+AGG + Chr3:12848820-12848839 MsG0380012215.01.T01:intron 20.0%
!!! AGTTATTTTGATATTGCAAT+TGG + Chr3:12849465-12849484 MsG0380012215.01.T01:CDS 20.0%
!!! CTCGAATATTTTTTTTTTTG+TGG + Chr3:12850119-12850138 MsG0380012215.01.T01:intron 20.0%
!!! GAATATTTTTTTTTTTGTGG+TGG + Chr3:12850122-12850141 MsG0380012215.01.T01:intron 20.0%
!!! GTATAAATATTTTGCTATGT+TGG - Chr3:12850238-12850257 None:intergenic 20.0%
!!! TAAACCTAATTCCTATTTTA+AGG + Chr3:12850471-12850490 MsG0380012215.01.T01:CDS 20.0%
!!! TACTATAGATTTTTTTGAAG+AGG - Chr3:12851228-12851247 None:intergenic 20.0%
!!! TCATATGAAATTTTGAATCT+TGG - Chr3:12851872-12851891 None:intergenic 20.0%
!!! TTTAATTGATATGGTTTTCA+TGG + Chr3:12848640-12848659 MsG0380012215.01.T01:CDS 20.0%
!!! TTTAATTTATTTGAAGAGGA+AGG + Chr3:12849365-12849384 MsG0380012215.01.T01:intron 20.0%
!!! TTTTGTTTTTTTTATTGCGT+TGG + Chr3:12849158-12849177 MsG0380012215.01.T01:intron 20.0%
! AAAATACGATTGCAAAAGAT+GGG + Chr3:12850583-12850602 MsG0380012215.01.T01:CDS 25.0%
! AAAGCCTTAAAATAGGAATT+AGG - Chr3:12850478-12850497 None:intergenic 25.0%
! ACTTATTTAATATCTAACCC+GGG + Chr3:12849648-12849667 MsG0380012215.01.T01:intron 25.0%
! CTCTAATCAGAAATAAGAAA+GGG - Chr3:12852120-12852139 None:intergenic 25.0%
! GAATATGCAAATCAACTTAT+TGG + Chr3:12849415-12849434 MsG0380012215.01.T01:CDS 25.0%
! GGACAAAGTAGATTTATAAT+TGG - Chr3:12850971-12850990 None:intergenic 25.0%
! TACCATTAAAGCCTTAAAAT+AGG - Chr3:12850485-12850504 None:intergenic 25.0%
! TCTCTAATCAGAAATAAGAA+AGG - Chr3:12852121-12852140 None:intergenic 25.0%
! TGATGCTAGAAAACAATAAA+GGG - Chr3:12851273-12851292 None:intergenic 25.0%
! TGCAAATTATCAATCTATGT+TGG + Chr3:12848880-12848899 MsG0380012215.01.T01:CDS 25.0%
! TGTTCTTTCTAATATTCTAG+GGG + Chr3:12848822-12848841 MsG0380012215.01.T01:intron 25.0%
! TTCTTTAATCAGTGTAGAAT+TGG - Chr3:12851164-12851183 None:intergenic 25.0%
! TTGATGCTAGAAAACAATAA+AGG - Chr3:12851274-12851293 None:intergenic 25.0%
!! ACAAAGAAAATAGACTGTTT+TGG + Chr3:12849697-12849716 MsG0380012215.01.T01:intron 25.0%
!! CAAAGAAAATAGACTGTTTT+GGG + Chr3:12849698-12849717 MsG0380012215.01.T01:intron 25.0%
!! GTTTAAATTTTTCGCATGTT+AGG - Chr3:12850069-12850088 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG + Chr3:12851602-12851621 MsG0380012215.01.T01:CDS 25.0%
!!! ATGATGAAATTTTTAAGGCT+AGG + Chr3:12849065-12849084 MsG0380012215.01.T01:CDS 25.0%
!!! CGAGATTGTATTAGTTTTAA+GGG - Chr3:12850103-12850122 None:intergenic 25.0%
!!! TCGAGATTGTATTAGTTTTA+AGG - Chr3:12850104-12850123 None:intergenic 25.0%
!!! TTCCTATTTTAAGGCTTTAA+TGG + Chr3:12850480-12850499 MsG0380012215.01.T01:CDS 25.0%
AATGAAGATTCACACCTAAT+TGG + Chr3:12849088-12849107 MsG0380012215.01.T01:CDS 30.0%
ATCAAAATAACTGGTACATC+TGG - Chr3:12849457-12849476 None:intergenic 30.0%
ATGCTAAATAATGAGCAGAT+CGG + Chr3:12850032-12850051 MsG0380012215.01.T01:intron 30.0%
CAAAATACGATTGCAAAAGA+TGG + Chr3:12850582-12850601 MsG0380012215.01.T01:CDS 30.0%
CAATAAGAAGACATGATAGA+CGG + Chr3:12850333-12850352 MsG0380012215.01.T01:intron 30.0%
CCATATCAATTAAATCAACC+TGG - Chr3:12848634-12848653 None:intergenic 30.0%
CTTCGTCTTCTTTATAAGAA+AGG + Chr3:12851698-12851717 MsG0380012215.01.T01:CDS 30.0%
GAACTCATAGAATACAAAAG+TGG + Chr3:12849243-12849262 MsG0380012215.01.T01:CDS 30.0%
GACAATGCATAAAATATGCA+AGG - Chr3:12850167-12850186 None:intergenic 30.0%
GAGGAAGAAGTTCTTTAATA+AGG - Chr3:12851484-12851503 None:intergenic 30.0%
GTGAACTTGAATGCATAAAA+AGG - Chr3:12849040-12849059 None:intergenic 30.0%
TAATCAGAAATAAGAAAGGG+TGG - Chr3:12852117-12852136 None:intergenic 30.0%
TAATGGTATCTGATTTCTTG+CGG + Chr3:12850497-12850516 MsG0380012215.01.T01:CDS 30.0%
TATTAGAACTAGCGTTTAGA+CGG - Chr3:12850370-12850389 None:intergenic 30.0%
TGAAACTTCTCATATGTTGA+AGG + Chr3:12851895-12851914 MsG0380012215.01.T01:CDS 30.0%
TTGCCTTCTGTCTTTAAATA+GGG - Chr3:12850539-12850558 None:intergenic 30.0%
! AAACTTTAAAGATAGAGACC+AGG + Chr3:12848613-12848632 MsG0380012215.01.T01:CDS 30.0%
! ATGGATGAAAAAGTATGCAT+CGG + Chr3:12848659-12848678 MsG0380012215.01.T01:intron 30.0%
! ATTGTCAGACTTTTGTGAAA+TGG - Chr3:12849933-12849952 None:intergenic 30.0%
! TATCAATCTATGTTGGTTGA+GGG + Chr3:12848887-12848906 MsG0380012215.01.T01:CDS 30.0%
! TTATCAATCTATGTTGGTTG+AGG + Chr3:12848886-12848905 MsG0380012215.01.T01:CDS 30.0%
!! CCAGGTTGATTTAATTGATA+TGG + Chr3:12848631-12848650 MsG0380012215.01.T01:CDS 30.0%
!! TGGTCTCTATCTTTAAAGTT+TGG - Chr3:12848614-12848633 None:intergenic 30.0%
!!! ATTTTTTGACAATGACACCT+AGG - Chr3:12850397-12850416 None:intergenic 30.0%
AACCAAACAAATGTTTCCCT+CGG + Chr3:12850649-12850668 MsG0380012215.01.T01:CDS 35.0%
AACCCCTATTTAAAGACAGA+AGG + Chr3:12850533-12850552 MsG0380012215.01.T01:CDS 35.0%
AAGATTCAATGTACTGTGTG+GGG + Chr3:12848848-12848867 MsG0380012215.01.T01:CDS 35.0%
AGTTGTGCTAAGTATCATTG+CGG + Chr3:12850738-12850757 MsG0380012215.01.T01:CDS 35.0%
AGTTTATAGTCATGGCAAGT+TGG - Chr3:12848968-12848987 None:intergenic 35.0%
ATACACCATCAACAAAAGAG+AGG - Chr3:12850897-12850916 None:intergenic 35.0%
ATCACAGAAGTTTATCAACG+TGG - Chr3:12849339-12849358 None:intergenic 35.0%
CAAGATTCAATGTACTGTGT+GGG + Chr3:12848847-12848866 MsG0380012215.01.T01:CDS 35.0%
CAATGATACTTAGCACAACT+TGG - Chr3:12850738-12850757 None:intergenic 35.0%
CAGTGTAGAATTGGTATACT+AGG - Chr3:12851155-12851174 None:intergenic 35.0%
CTTGCCTTCTGTCTTTAAAT+AGG - Chr3:12850540-12850559 None:intergenic 35.0%
CTTGGTTATGAAATCAACAG+AGG - Chr3:12850992-12851011 None:intergenic 35.0%
GCTAATGCACTCTACTATAA+AGG + Chr3:12851539-12851558 MsG0380012215.01.T01:CDS 35.0%
GGAACAATTGAGTCATAAAC+CGG - Chr3:12849019-12849038 None:intergenic 35.0%
GGAATCAGACATTTGATGTA+AGG + Chr3:12851567-12851586 MsG0380012215.01.T01:CDS 35.0%
GTTAAGCTATCAACTGATCT+TGG - Chr3:12851506-12851525 None:intergenic 35.0%
TAAATAATGAGCAGATCGGT+TGG + Chr3:12850036-12850055 MsG0380012215.01.T01:intron 35.0%
TCTCATATGTTGAAGGAGTT+AGG + Chr3:12851902-12851921 MsG0380012215.01.T01:CDS 35.0%
TGCATAAAATATGCAAGGTC+CGG - Chr3:12850162-12850181 None:intergenic 35.0%
TGCCTTCTGTCTTTAAATAG+GGG - Chr3:12850538-12850557 None:intergenic 35.0%
TGCTAGAAAACAATAAAGGG+AGG - Chr3:12851270-12851289 None:intergenic 35.0%
TTCTTTCGAGAACAGATGTT+TGG - Chr3:12850680-12850699 None:intergenic 35.0%
TTTAAAGACAGAAGGCAAGA+CGG + Chr3:12850541-12850560 MsG0380012215.01.T01:CDS 35.0%
! ATTGGAGTATTAGCTGCAAA+GGG + Chr3:12849219-12849238 MsG0380012215.01.T01:CDS 35.0%
! GGAAGACAAGATTCTTTTGA+AGG - Chr3:12850950-12850969 None:intergenic 35.0%
! GTTATACTAGTTTAGAGACC+CGG - Chr3:12849679-12849698 None:intergenic 35.0%
! TATTGGAGTATTAGCTGCAA+AGG + Chr3:12849218-12849237 MsG0380012215.01.T01:CDS 35.0%
!! CTCTGTTGATTTCATAACCA+AGG + Chr3:12850990-12851009 MsG0380012215.01.T01:CDS 35.0%
!! GACAAGATTCTTTTGAAGGA+AGG - Chr3:12850946-12850965 None:intergenic 35.0%
!! GCTAGTTCTAATAAAAGCCT+AGG + Chr3:12850377-12850396 MsG0380012215.01.T01:intron 35.0%
!!! ATCAACCAATTTTTTGCCTC+TGG + Chr3:12849272-12849291 MsG0380012215.01.T01:CDS 35.0%
!!! CTCTTTTGTTGATGGTGTAT+GGG + Chr3:12850897-12850916 MsG0380012215.01.T01:CDS 35.0%
!!! TCTCTTTTGTTGATGGTGTA+TGG + Chr3:12850896-12850915 MsG0380012215.01.T01:CDS 35.0%
AAGCTATCAACTGATCTTGG+AGG - Chr3:12851503-12851522 None:intergenic 40.0%
ACTGGAACCATTCTCTTTGT+TGG + Chr3:12852148-12852167 MsG0380012215.01.T01:CDS 40.0%
AGACTATCGTGTAGTAAGTC+AGG - Chr3:12851812-12851831 None:intergenic 40.0%
AGAGTGCATTAGCAAAGATG+AGG - Chr3:12851532-12851551 None:intergenic 40.0%
ATCAATAAACTGCATCCCCT+CGG - Chr3:12851657-12851676 None:intergenic 40.0%
CAACTCCAGAGGCAAAAAAT+TGG - Chr3:12849280-12849299 None:intergenic 40.0%
CAATGCTAACAGTCCATCTT+TGG - Chr3:12851768-12851787 None:intergenic 40.0%
CACTCTACTATAAAGGAGCA+TGG + Chr3:12851546-12851565 MsG0380012215.01.T01:CDS 40.0%
CACTTGTCCAACAAAGAGAA+TGG - Chr3:12852158-12852177 None:intergenic 40.0%
CATAAAATATGCAAGGTCCG+GGG - Chr3:12850160-12850179 None:intergenic 40.0%
CTGATTAGAGAAGATTCGAC+TGG + Chr3:12852130-12852149 MsG0380012215.01.T01:CDS 40.0%
GAAGGAAGGTTGAAGAGAAA+GGG - Chr3:12850932-12850951 None:intergenic 40.0%
GAGACTGCAGAAATACAAGA+CGG + Chr3:12849965-12849984 MsG0380012215.01.T01:intron 40.0%
GAGGGAAACATTTGTTTGGT+TGG - Chr3:12850650-12850669 None:intergenic 40.0%
GCAAGATTCAATGTACTGTG+TGG + Chr3:12848846-12848865 MsG0380012215.01.T01:CDS 40.0%
GCATAAAATATGCAAGGTCC+GGG - Chr3:12850161-12850180 None:intergenic 40.0%
TATGTTGAAGGAGTTAGGAG+TGG + Chr3:12851907-12851926 MsG0380012215.01.T01:CDS 40.0%
TCATCTACTTCTACTTCAGC+AGG - Chr3:12851839-12851858 None:intergenic 40.0%
TCCTGGAGGTTTGACAAAAA+TGG + Chr3:12851943-12851962 MsG0380012215.01.T01:CDS 40.0%
TGAAGGAAGGTTGAAGAGAA+AGG - Chr3:12850933-12850952 None:intergenic 40.0%
TGACTGAGCTTCCATTCAAA+AGG - Chr3:12851616-12851635 None:intergenic 40.0%
TGGAGGTTTGACAAAAATGG+TGG + Chr3:12851946-12851965 MsG0380012215.01.T01:CDS 40.0%
TTTCTTCCAGATGCCAAAGA+TGG + Chr3:12851752-12851771 MsG0380012215.01.T01:CDS 40.0%
TTTGAATGGAAGCTCAGTCA+AGG + Chr3:12851616-12851635 MsG0380012215.01.T01:CDS 40.0%
! GTCTTGTATTTCTGCAGTCT+CGG - Chr3:12849966-12849985 None:intergenic 40.0%
! TGAGATTAGCTCAGTTGGTA+TGG - Chr3:12850189-12850208 None:intergenic 40.0%
! TTGGAGTATTAGCTGCAAAG+GGG + Chr3:12849220-12849239 MsG0380012215.01.T01:CDS 40.0%
!! ACCATTTTTGTCAAACCTCC+AGG - Chr3:12851947-12851966 None:intergenic 40.0%
!! CAAAGATGGACTGTTAGCAT+TGG + Chr3:12851766-12851785 MsG0380012215.01.T01:CDS 40.0%
!! TAACAAAGTGTTGCGTCACA+TGG - Chr3:12851201-12851220 None:intergenic 40.0%
!! TTTGGTTGGTGATTGATTCG+TGG - Chr3:12850636-12850655 None:intergenic 40.0%
!!! CAATTTTTTGCCTCTGGAGT+TGG + Chr3:12849278-12849297 MsG0380012215.01.T01:CDS 40.0%
AAACACAGGTGCACACTTTG+GGG + Chr3:12849391-12849410 MsG0380012215.01.T01:intron 45.0%
AACAAATGTTTCCCTCGGCA+TGG + Chr3:12850654-12850673 MsG0380012215.01.T01:CDS 45.0%
AACAGTCCATCTTTGGCATC+TGG - Chr3:12851761-12851780 None:intergenic 45.0%
ACAGAAAGGCTATCACTCAC+AGG - Chr3:12851980-12851999 None:intergenic 45.0%
AGAAACACAGGTGCACACTT+TGG + Chr3:12849389-12849408 MsG0380012215.01.T01:intron 45.0%
AGCACAACTTGGAGCAACAA+TGG - Chr3:12850727-12850746 None:intergenic 45.0%
ATCTGATTTCTTGCGGCACA+AGG + Chr3:12850504-12850523 MsG0380012215.01.T01:CDS 45.0%
CTGAGAGGACGATAGAAACA+AGG - Chr3:12850849-12850868 None:intergenic 45.0%
GAAACACAGGTGCACACTTT+GGG + Chr3:12849390-12849409 MsG0380012215.01.T01:intron 45.0%
GAAGACATGATAGACGGACA+CGG + Chr3:12850339-12850358 MsG0380012215.01.T01:intron 45.0%
GACGATAGAAACAAGGTGAG+AGG - Chr3:12850842-12850861 None:intergenic 45.0%
GAGCTGTGTAACACAAACCT+TGG - Chr3:12851010-12851029 None:intergenic 45.0%
GTGCATTAGCAAAGATGAGG+CGG - Chr3:12851529-12851548 None:intergenic 45.0%
GTTTCTATCGTCCTCTCAGA+CGG + Chr3:12850850-12850869 MsG0380012215.01.T01:CDS 45.0%
TCAAGATCATCCAACTCCAG+AGG - Chr3:12849291-12849310 None:intergenic 45.0%
TCGAGAAGCTGTTGTTGTGT+GGG - Chr3:12850778-12850797 None:intergenic 45.0%
TGCATTAGCAAAGATGAGGC+GGG - Chr3:12851528-12851547 None:intergenic 45.0%
TGCCGAGGGAAACATTTGTT+TGG - Chr3:12850654-12850673 None:intergenic 45.0%
TGCGTCACATGGTACATACA+TGG - Chr3:12851190-12851209 None:intergenic 45.0%
TGGGCTGAAAAAGAGACGAA+TGG + Chr3:12851458-12851477 MsG0380012215.01.T01:CDS 45.0%
! GATCATCGGTGGATTTGGAA+CGG - Chr3:12850807-12850826 None:intergenic 45.0%
! GTTGAGATCATCGGTGGATT+TGG - Chr3:12850812-12850831 None:intergenic 45.0%
! GTTTTACCTTTCACTCCTGG+AGG + Chr3:12851929-12851948 MsG0380012215.01.T01:CDS 45.0%
! TGGAGTATTAGCTGCAAAGG+GGG + Chr3:12849221-12849240 MsG0380012215.01.T01:CDS 45.0%
!! AGATGGACTGTTAGCATTGG+TGG + Chr3:12851769-12851788 MsG0380012215.01.T01:CDS 45.0%
!! GTGGTTTTACCTTTCACTCC+TGG + Chr3:12851926-12851945 MsG0380012215.01.T01:CDS 45.0%
!! GTTAGCATTGGTGGAGAAGT+TGG + Chr3:12851778-12851797 MsG0380012215.01.T01:CDS 45.0%
!! TATTAAAAAAAATATTCTTA+TGG - Chr3:12849765-12849784 None:intergenic 5.0%
!!! TTAATTTTGATTAAAATTAT+AGG - Chr3:12850260-12850279 None:intergenic 5.0%
AATAAACTGCATCCCCTCGG+TGG - Chr3:12851654-12851673 None:intergenic 50.0%
CCAACTGAGCTAATCTCACG+AGG + Chr3:12850191-12850210 MsG0380012215.01.T01:intron 50.0%
CCATCAACAAAAGAGAGGCG+AGG - Chr3:12850892-12850911 None:intergenic 50.0%
GAAGAGGAAGGGAGAAACAC+AGG + Chr3:12849377-12849396 MsG0380012215.01.T01:intron 50.0%
GAGGTTGTTGAGATCATCGG+TGG - Chr3:12850818-12850837 None:intergenic 50.0%
GGCGAGGTTGTTGAGATCAT+CGG - Chr3:12850821-12850840 None:intergenic 50.0%
GTCAAACCTCCAGGAGTGAA+AGG - Chr3:12851938-12851957 None:intergenic 50.0%
GTCGAGAAGCTGTTGTTGTG+TGG - Chr3:12850779-12850798 None:intergenic 50.0%
GTGCTAAGTATCATTGCGGC+TGG + Chr3:12850742-12850761 MsG0380012215.01.T01:CDS 50.0%
TAGAAACAAGGTGAGAGGCG+AGG - Chr3:12850837-12850856 None:intergenic 50.0%
! CCTCGCCTCTCTTTTGTTGA+TGG + Chr3:12850889-12850908 MsG0380012215.01.T01:CDS 50.0%
! CCTCGTGAGATTAGCTCAGT+TGG - Chr3:12850194-12850213 None:intergenic 50.0%
!! TGAGTCATAAACCGGCTCGA+CGG - Chr3:12849011-12849030 None:intergenic 50.0%
AAGGTCCGGGGTTCGAATTC+AGG - Chr3:12850148-12850167 None:intergenic 55.0%
ACAGATGTTTGGCCATGCCG+AGG - Chr3:12850669-12850688 None:intergenic 55.0%
ATATCTAACCCGGGCAACGC+CGG + Chr3:12849657-12849676 MsG0380012215.01.T01:intron 55.0%
ATCCCCTCGGTGGTCATGAA+GGG - Chr3:12851644-12851663 None:intergenic 55.0%
CAGATGTTTGGCCATGCCGA+GGG - Chr3:12850668-12850687 None:intergenic 55.0%
CAGTGAAAGCTCCGTCTGAG+AGG - Chr3:12850864-12850883 None:intergenic 55.0%
CTCTCAGACGGAGCTTTCAC+TGG + Chr3:12850862-12850881 MsG0380012215.01.T01:CDS 55.0%
GTTCCCTTCATGACCACCGA+GGG + Chr3:12851638-12851657 MsG0380012215.01.T01:CDS 55.0%
TCAGACGGAGCTTTCACTGG+CGG + Chr3:12850865-12850884 MsG0380012215.01.T01:CDS 55.0%
TTCCCTTCATGACCACCGAG+GGG + Chr3:12851639-12851658 MsG0380012215.01.T01:CDS 55.0%
! CATCGGTGGATTTGGAACGG+AGG - Chr3:12850804-12850823 None:intergenic 55.0%
!! ATCATTGCGGCTGGCTCTGA+GGG + Chr3:12850751-12850770 MsG0380012215.01.T01:CDS 55.0%
!! TATCATTGCGGCTGGCTCTG+AGG + Chr3:12850750-12850769 MsG0380012215.01.T01:CDS 55.0%
CAGACGGAGCTTTCACTGGC+GGG + Chr3:12850866-12850885 MsG0380012215.01.T01:CDS 60.0%
CATCCCCTCGGTGGTCATGA+AGG - Chr3:12851645-12851664 None:intergenic 60.0%
GAAGCTGCTGCAGCTAGTGC+TGG + Chr3:12852049-12852068 MsG0380012215.01.T01:CDS 60.0%
GGATATGACCACCGTCGAGC+CGG + Chr3:12848997-12849016 MsG0380012215.01.T01:CDS 60.0%
GGTGGCCTGAATTCGAACCC+CGG + Chr3:12850140-12850159 MsG0380012215.01.T01:intron 60.0%
GGTTCCCTTCATGACCACCG+AGG + Chr3:12851637-12851656 MsG0380012215.01.T01:CDS 60.0%
TATCTAACCCGGGCAACGCC+GGG + Chr3:12849658-12849677 MsG0380012215.01.T01:intron 60.0%
TTTAGAGACCCGGCGTTGCC+CGG - Chr3:12849669-12849688 None:intergenic 60.0%
!! GTCATAAACCGGCTCGACGG+TGG - Chr3:12849008-12849027 None:intergenic 60.0%
TTAGAGACCCGGCGTTGCCC+GGG - Chr3:12849668-12849687 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 12848599 12852198 12848599 ID=MsG0380012215.01;Name=MsG0380012215.01
Chr3 mRNA 12848599 12852198 12848599 ID=MsG0380012215.01.T01;Parent=MsG0380012215.01;Name=MsG0380012215.01.T01;_AED=0.59;_eAED=0.59;_QI=0|0|0|0.33|1|1|6|0|619
Chr3 exon 12848599 12848670 12848599 ID=MsG0380012215.01.T01:exon:393;Parent=MsG0380012215.01.T01
Chr3 exon 12848842 12849109 12848842 ID=MsG0380012215.01.T01:exon:394;Parent=MsG0380012215.01.T01
Chr3 exon 12849214 12849310 12849214 ID=MsG0380012215.01.T01:exon:395;Parent=MsG0380012215.01.T01
Chr3 exon 12849399 12849508 12849399 ID=MsG0380012215.01.T01:exon:396;Parent=MsG0380012215.01.T01
Chr3 exon 12850470 12851011 12850470 ID=MsG0380012215.01.T01:exon:397;Parent=MsG0380012215.01.T01
Chr3 exon 12851428 12852198 12851428 ID=MsG0380012215.01.T01:exon:398;Parent=MsG0380012215.01.T01
Chr3 CDS 12848599 12848670 12848599 ID=MsG0380012215.01.T01:cds;Parent=MsG0380012215.01.T01
Chr3 CDS 12848842 12849109 12848842 ID=MsG0380012215.01.T01:cds;Parent=MsG0380012215.01.T01
Chr3 CDS 12849214 12849310 12849214 ID=MsG0380012215.01.T01:cds;Parent=MsG0380012215.01.T01
Chr3 CDS 12849399 12849508 12849399 ID=MsG0380012215.01.T01:cds;Parent=MsG0380012215.01.T01
Chr3 CDS 12850470 12851011 12850470 ID=MsG0380012215.01.T01:cds;Parent=MsG0380012215.01.T01
Chr3 CDS 12851428 12852198 12851428 ID=MsG0380012215.01.T01:cds;Parent=MsG0380012215.01.T01
Gene Sequence

>MsG0380012215.01.T01

ATGTGGAGAATGCCAAACTTTAAAGATAGAGACCAGGTTGATTTAATTGATATGGTTTTCATGGATGAAAAAGGGAGCAAGATTCAATGTACTGTGTGGGGTGACAAAGTTGCAAATTATCAATCTATGTTGGTTGAGGGAATGTGTTACGAGATAACAAATATCTTAGTTTCTAAGAACAACTATAAATTTAAACCAACTTGCCATGACTATAAACTATTTTTTAAGGATATGACCACCGTCGAGCCGGTTTATGACTCAATTGTTCCTTTTTATGCATTCAAGTTCACATCATATGATGAAATTTTTAAGGCTAGGAATGAAGATTCACACCTAATTGATATTATTGGAGTATTAGCTGCAAAGGGGGAACTCATAGAATACAAAAGTGGTGTTCAATCAACCAATTTTTTGCCTCTGGAGTTGGATGATCTTGAGTGCACACTTTGGGGAGAATATGCAAATCAACTTATTGGCTTTATGTCTGAAAATCCAGATGTACCAGTTATTTTGATATTGCAATTGGCTAAGTTTAAATTATATAAAGTTAAACCTAATTCCTATTTTAAGGCTTTAATGGTATCTGATTTCTTGCGGCACAAGGCATTCAAACCCCTATTTAAAGACAGAAGGCAAGACGGTTGCAGTATTGTATTGCACAAAATACGATTGCAAAAGATGGGAAGAAACAAAAGAAGAGCAACGATTCTCCACGAATCAATCACCAACCAAACAAATGTTTCCCTCGGCATGGCCAAACATCTGTTCTCGAAAGAATCAGACAAGAACATCGTGTTTTCGCCATTGTTGCTCCAAGTTGTGCTAAGTATCATTGCGGCTGGCTCTGAGGGTCCCACACAACAACAGCTTCTCGACTTCCTCCGTTCCAAATCCACCGATGATCTCAACAACCTCGCCTCTCACCTTGTTTCTATCGTCCTCTCAGACGGAGCTTTCACTGGCGGGCCTCGCCTCTCTTTTGTTGATGGTGTATGGGTTGAACAAACCCTTTCTCTTCAACCTTCCTTCAAAAGAATCTTGTCTTCCAATTATAAATCTACTTTGTCCTCTGTTGATTTCATAACCAAGTCTGCTGAAGTGATTAAAGAAGTGAATTTATGGGCTGAAAAAGAGACGAATGGCCTTATTAAAGAACTTCTTCCTCCAAGATCAGTTGATAGCTTAACCCGCCTCATCTTTGCTAATGCACTCTACTATAAAGGAGCATGGAATCAGACATTTGATGTAAGGAAAACAGAAGACTATGATTTTCACCTTTTGAATGGAAGCTCAGTCAAGGTTCCCTTCATGACCACCGAGGGGATGCAGTTTATTGATGAATACTATGATTATAAAGTTCTTCGTCTTCTTTATAAGAAAGGCGTAGACAAACGTCAATTTTCTATGTACATTTTTCTTCCAGATGCCAAAGATGGACTGTTAGCATTGGTGGAGAAGTTGGCATCTGAACCTGACTTACTACACGATAGTCTTCGTCCTGCTGAAGTAGAAGTAGATGAATTCAGAATTCCAAGATTCAAAATTTCATATGAGCTTGAAACTTCTCATATGTTGAAGGAGTTAGGAGTGGTTTTACCTTTCACTCCTGGAGGTTTGACAAAAATGGTGGACTCTTCTCCTGTGAGTGATAGCCTTTCTGTTTCTAATATATTTCACAAATCTTTCATTGAAGTAAATGAAAAAGGCACTGAAGCTGCTGCAGCTAGTGCTGGAGACTGTGACGCTGAGTGTGTCGCGATAGACTTTGTAGCTGACCACCCTTTCTTATTTCTGATTAGAGAAGATTCGACTGGAACCATTCTCTTTGTTGGACAAGTGCTCAATCCTCTTGATCAGTGA
Protein sequence

>MsG0380012215.01.T01

MWRMPNFKDRDQVDLIDMVFMDEKGSKIQCTVWGDKVANYQSMLVEGMCYEITNILVSKNNYKFKPTCHDYKLFFKDMTTVEPVYDSIVPFYAFKFTSYDEIFKARNEDSHLIDIIGVLAAKGELIEYKSGVQSTNFLPLELDDLECTLWGEYANQLIGFMSENPDVPVILILQLAKFKLYKVKPNSYFKALMVSDFLRHKAFKPLFKDRRQDGCSIVLHKIRLQKMGRNKRRATILHESITNQTNVSLGMAKHLFSKESDKNIVFSPLLLQVVLSIIAAGSEGPTQQQLLDFLRSKSTDDLNNLASHLVSIVLSDGAFTGGPRLSFVDGVWVEQTLSLQPSFKRILSSNYKSTLSSVDFITKSAEVIKEVNLWAEKETNGLIKELLPPRSVDSLTRLIFANALYYKGAWNQTFDVRKTEDYDFHLLNGSSVKVPFMTTEGMQFIDEYYDYKVLRLLYKKGVDKRQFSMYIFLPDAKDGLLALVEKLASEPDLLHDSLRPAEVEVDEFRIPRFKISYELETSHMLKELGVVLPFTPGGLTKMVDSSPVSDSLSVSNIFHKSFIEVNEKGTEAAAASAGDCDAECVAIDFVADHPFLFLIREDSTGTILFVGQVLNPLDQ*