Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002328.01.T01 | RHN65795.1 | 81.061 | 396 | 72 | 1 | 1 | 393 | 46 | 441 | 0 | 633 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002328.01.T01 | Q9S7T8 | 52.32 | 388 | 178 | 3 | 11 | 391 | 3 | 390 | 2.66E-139 | 405 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002328.01.T01 | A0A396IPH6 | 81.061 | 396 | 72 | 1 | 1 | 393 | 46 | 441 | 0.0 | 633 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180002327.01 | MsG0180002328.01 | 0.965916 | 3.146787e-125 | 2.072939e-119 |
| MsG0180002328.01 | MsG0380012215.01 | 0.832475 | 9.253416e-56 | 1.035424e-52 |
| MsG0180002328.01 | MsG0380012217.01 | 0.840595 | 7.909295e-58 | 1.132060e-54 |
| MsG0180002328.01 | MsG0480021587.01 | 0.822033 | 2.940687e-53 | 2.432976e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002328.01.T01 | MTR_3g018740 | 82.642 | 386 | 64 | 1 | 11 | 393 | 3 | 388 | 0.0 | 626 |
| MsG0180002328.01.T01 | MTR_3g101010 | 71.762 | 386 | 103 | 2 | 11 | 391 | 3 | 387 | 0.0 | 520 |
| MsG0180002328.01.T01 | MTR_8g027395 | 67.939 | 393 | 120 | 4 | 3 | 391 | 5 | 395 | 0.0 | 516 |
| MsG0180002328.01.T01 | MTR_2g045980 | 68.205 | 390 | 113 | 5 | 11 | 393 | 3 | 388 | 2.64e-180 | 506 |
| MsG0180002328.01.T01 | MTR_2g046030 | 66.923 | 390 | 118 | 4 | 11 | 393 | 3 | 388 | 2.61e-178 | 501 |
| MsG0180002328.01.T01 | MTR_4g045707 | 66.580 | 383 | 124 | 2 | 12 | 391 | 5 | 386 | 4.42e-178 | 501 |
| MsG0180002328.01.T01 | MTR_8g027420 | 67.624 | 383 | 109 | 4 | 11 | 391 | 4 | 373 | 6.92e-177 | 497 |
| MsG0180002328.01.T01 | MTR_3g101180 | 64.051 | 395 | 124 | 6 | 13 | 391 | 6 | 398 | 5.49e-170 | 481 |
| MsG0180002328.01.T01 | MTR_3g048000 | 63.780 | 381 | 117 | 4 | 14 | 391 | 28 | 390 | 1.43e-168 | 477 |
| MsG0180002328.01.T01 | MTR_8g461160 | 64.872 | 390 | 127 | 4 | 13 | 393 | 6 | 394 | 1.97e-168 | 477 |
| MsG0180002328.01.T01 | MTR_3g101030 | 63.980 | 397 | 117 | 5 | 18 | 391 | 34 | 427 | 7.15e-168 | 476 |
| MsG0180002328.01.T01 | MTR_4g088535 | 66.580 | 383 | 108 | 5 | 8 | 388 | 2 | 366 | 5.36e-167 | 473 |
| MsG0180002328.01.T01 | MTR_7g451890 | 59.649 | 399 | 151 | 3 | 3 | 392 | 4 | 401 | 4.68e-166 | 471 |
| MsG0180002328.01.T01 | MTR_7g050810 | 60.250 | 400 | 146 | 4 | 5 | 392 | 5 | 403 | 2.92e-165 | 469 |
| MsG0180002328.01.T01 | MTR_4g088525 | 65.651 | 361 | 122 | 2 | 32 | 391 | 8 | 367 | 4.80e-164 | 464 |
| MsG0180002328.01.T01 | MTR_7g047780 | 60.401 | 399 | 148 | 4 | 3 | 392 | 4 | 401 | 1.86e-163 | 464 |
| MsG0180002328.01.T01 | MTR_3g101130 | 61.856 | 388 | 135 | 4 | 12 | 391 | 5 | 387 | 4.28e-162 | 461 |
| MsG0180002328.01.T01 | MTR_7g050750 | 59.439 | 392 | 149 | 3 | 10 | 392 | 5 | 395 | 6.23e-160 | 455 |
| MsG0180002328.01.T01 | MTR_3g015620 | 62.982 | 389 | 110 | 5 | 13 | 392 | 16 | 379 | 2.36e-154 | 441 |
| MsG0180002328.01.T01 | MTR_3g101050 | 64.230 | 383 | 112 | 7 | 16 | 391 | 32 | 396 | 2.47e-150 | 431 |
| MsG0180002328.01.T01 | MTR_3g102920 | 56.992 | 379 | 119 | 6 | 21 | 391 | 66 | 408 | 1.19e-131 | 384 |
| MsG0180002328.01.T01 | MTR_3g101190 | 55.118 | 381 | 98 | 6 | 11 | 391 | 3 | 310 | 1.85e-128 | 372 |
| MsG0180002328.01.T01 | MTR_3g018747 | 73.180 | 261 | 52 | 2 | 137 | 393 | 9 | 255 | 5.95e-127 | 366 |
| MsG0180002328.01.T01 | MTR_3g101200 | 52.284 | 394 | 155 | 5 | 5 | 391 | 23 | 390 | 2.93e-122 | 359 |
| MsG0180002328.01.T01 | MTR_3g100995 | 65.613 | 253 | 80 | 2 | 144 | 392 | 14 | 263 | 1.93e-113 | 332 |
| MsG0180002328.01.T01 | MTR_7g050830 | 53.086 | 324 | 119 | 3 | 3 | 304 | 6 | 318 | 1.58e-111 | 330 |
| MsG0180002328.01.T01 | MTR_3g100010 | 55.769 | 312 | 90 | 3 | 36 | 314 | 40 | 336 | 7.29e-105 | 313 |
| MsG0180002328.01.T01 | MTR_3g015760 | 61.372 | 277 | 97 | 3 | 122 | 392 | 8 | 280 | 8.74e-105 | 311 |
| MsG0180002328.01.T01 | MTR_3g111160 | 68.868 | 212 | 59 | 2 | 185 | 391 | 9 | 218 | 1.64e-93 | 280 |
| MsG0180002328.01.T01 | MTR_3g114310 | 42.347 | 392 | 207 | 11 | 14 | 390 | 20 | 407 | 3.41e-86 | 268 |
| MsG0180002328.01.T01 | MTR_3g100520 | 62.500 | 216 | 70 | 3 | 178 | 391 | 1 | 207 | 5.31e-85 | 258 |
| MsG0180002328.01.T01 | MTR_3g101110 | 58.475 | 236 | 64 | 3 | 140 | 367 | 71 | 280 | 3.88e-82 | 253 |
| MsG0180002328.01.T01 | MTR_2g046410 | 59.664 | 238 | 77 | 5 | 163 | 393 | 124 | 349 | 8.40e-82 | 254 |
| MsG0180002328.01.T01 | MTR_3g099970 | 59.898 | 197 | 61 | 2 | 137 | 333 | 20 | 198 | 3.33e-73 | 227 |
| MsG0180002328.01.T01 | MTR_3g111150 | 63.636 | 176 | 40 | 1 | 15 | 190 | 1 | 152 | 2.74e-69 | 216 |
| MsG0180002328.01.T01 | MTR_3g101150 | 64.557 | 158 | 46 | 2 | 243 | 391 | 1 | 157 | 2.99e-62 | 197 |
| MsG0180002328.01.T01 | MTR_3g102870 | 58.788 | 165 | 62 | 2 | 200 | 359 | 1 | 164 | 9.27e-58 | 186 |
| MsG0180002328.01.T01 | MTR_3g101020 | 53.763 | 186 | 55 | 2 | 211 | 392 | 1 | 159 | 2.62e-55 | 179 |
| MsG0180002328.01.T01 | MTR_3g100990 | 73.600 | 125 | 33 | 0 | 13 | 137 | 5 | 129 | 1.61e-52 | 182 |
| MsG0180002328.01.T01 | MTR_4g093550 | 65.909 | 88 | 30 | 0 | 9 | 96 | 2 | 89 | 9.13e-28 | 105 |
| MsG0180002328.01.T01 | MTR_6g046890 | 64.384 | 73 | 21 | 1 | 32 | 99 | 18 | 90 | 8.21e-20 | 85.5 |
| MsG0180002328.01.T01 | MTR_3g101140 | 59.459 | 74 | 23 | 2 | 324 | 391 | 42 | 114 | 2.50e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180002328.01.T01 | AT1G47710 | 52.320 | 388 | 178 | 3 | 11 | 391 | 3 | 390 | 2.71e-140 | 405 |
| MsG0180002328.01.T01 | AT1G47710 | 52.320 | 388 | 178 | 3 | 11 | 391 | 30 | 417 | 1.14e-139 | 405 |
| MsG0180002328.01.T01 | AT3G45220 | 48.593 | 391 | 187 | 7 | 11 | 390 | 3 | 390 | 7.94e-121 | 356 |
| MsG0180002328.01.T01 | AT2G25240 | 48.849 | 391 | 178 | 7 | 11 | 390 | 3 | 382 | 1.71e-117 | 347 |
| MsG0180002328.01.T01 | AT2G26390 | 47.970 | 394 | 181 | 7 | 11 | 390 | 3 | 386 | 2.07e-116 | 344 |
| MsG0180002328.01.T01 | AT1G64030 | 42.711 | 391 | 191 | 6 | 11 | 390 | 3 | 371 | 3.48e-96 | 293 |
| MsG0180002328.01.T01 | AT2G14540 | 41.814 | 397 | 198 | 7 | 4 | 390 | 24 | 397 | 1.91e-94 | 289 |
| MsG0180002328.01.T01 | AT2G35580 | 42.967 | 391 | 190 | 8 | 11 | 390 | 3 | 371 | 6.90e-93 | 284 |
| MsG0180002328.01.T01 | AT1G62170 | 39.642 | 391 | 202 | 6 | 11 | 390 | 64 | 431 | 5.50e-91 | 281 |
| MsG0180002328.01.T01 | AT1G62170 | 36.730 | 422 | 200 | 7 | 13 | 390 | 66 | 464 | 8.47e-84 | 263 |
| MsG0180002328.01.T01 | AT1G64010 | 44.240 | 217 | 95 | 4 | 178 | 390 | 1 | 195 | 7.56e-53 | 175 |
| MsG0180002328.01.T01 | AT1G64010 | 44.059 | 202 | 87 | 4 | 193 | 390 | 2 | 181 | 5.24e-47 | 159 |
| MsG0180002328.01.T01 | AT1G62160 | 38.068 | 176 | 88 | 5 | 217 | 390 | 62 | 218 | 4.73e-29 | 113 |
| MsG0180002328.01.T01 | AT1G63280 | 48.305 | 118 | 57 | 2 | 134 | 249 | 5 | 120 | 4.86e-28 | 107 |
| MsG0180002328.01.T01 | AT1G51330 | 47.788 | 113 | 54 | 2 | 135 | 243 | 29 | 140 | 6.81e-23 | 95.5 |
| MsG0180002328.01.T01 | AT1G64020 | 31.250 | 112 | 74 | 3 | 18 | 127 | 10 | 120 | 1.13e-11 | 62.0 |
Find 81 sgRNAs with CRISPR-Local
Find 113 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAATGCACTCTACTTTAA+AGG | 0.141946 | 1:+36812013 | MsG0180002328.01.T01:CDS |
| TGATTAAAGAAGTGAATTTA+TGG | 0.223064 | 1:+36811912 | MsG0180002328.01.T01:CDS |
| GAGGAAGAAGTTCTTTAATA+AGG | 0.287252 | 1:-36811955 | None:intergenic |
| GTTGAGATCATCGGTGGATT+TGG | 0.293645 | 1:-36811288 | None:intergenic |
| GGACAAAGTAGATTTATAAT+TGG | 0.309459 | 1:-36811447 | None:intergenic |
| CAATGCTAACAGTCCATCTT+TGG | 0.352985 | 1:-36812239 | None:intergenic |
| ACTGGAACCATTCTCTTTGT+TGG | 0.353661 | 1:+36812622 | MsG0180002328.01.T01:CDS |
| CTCTCAGACGCCGCTTTCAC+TGG | 0.370831 | 1:+36811341 | MsG0180002328.01.T01:CDS |
| TGAAGGAAGGTTGAAGAGAA+AGG | 0.378765 | 1:-36811409 | None:intergenic |
| CTTCGTCTTCTTTATAAGAA+AGG | 0.383719 | 1:+36812172 | MsG0180002328.01.T01:CDS |
| GATTAAAGAAGTGAATTTAT+GGG | 0.386003 | 1:+36811913 | MsG0180002328.01.T01:CDS |
| TCTCATATGTTGAAGGAGTT+AGG | 0.397032 | 1:+36812376 | MsG0180002328.01.T01:CDS |
| ATGGTGGACTCTTCTCTTGT+TGG | 0.400037 | 1:+36812436 | MsG0180002328.01.T01:CDS |
| TTCTTTCGAGAACAGATGTT+TGG | 0.401374 | 1:-36811156 | None:intergenic |
| AACAGTCCATCTTTGGCATC+TGG | 0.409162 | 1:-36812232 | None:intergenic |
| TGCCGAGGGAAACATTTGTT+TGG | 0.416643 | 1:-36811130 | None:intergenic |
| TGAAACTTCTCATATGTTGA+AGG | 0.426857 | 1:+36812369 | MsG0180002328.01.T01:CDS |
| GGAATCAGACGTTTGATGTA+TGG | 0.438429 | 1:+36812041 | MsG0180002328.01.T01:CDS |
| GAAGGAAGGTTGAAGAGAAA+GGG | 0.450222 | 1:-36811408 | None:intergenic |
| TTTCTTCCAGATGCCAAAGA+TGG | 0.454297 | 1:+36812226 | MsG0180002328.01.T01:CDS |
| TTCATTGAAGTAAATGAAGA+AGG | 0.457204 | 1:+36812496 | MsG0180002328.01.T01:CDS |
| GTTAAGCTATCAACCGATCT+TGG | 0.459359 | 1:-36811977 | None:intergenic |
| GTTAGCATTGGTGGAGAAGT+TGG | 0.459448 | 1:+36812252 | MsG0180002328.01.T01:CDS |
| AGATGGACTGTTAGCATTGG+TGG | 0.461266 | 1:+36812243 | MsG0180002328.01.T01:CDS |
| GAAGCTGCTGCAGCTAGTGC+TGG | 0.463886 | 1:+36812523 | MsG0180002328.01.T01:CDS |
| TCACTGAGCTTCCATTCAAA+AGG | 0.472058 | 1:-36812087 | None:intergenic |
| CAGACGCCGCTTTCACTGGC+GGG | 0.477109 | 1:+36811345 | MsG0180002328.01.T01:CDS |
| CAATGATACTTAGCACAACT+TGG | 0.487762 | 1:-36811214 | None:intergenic |
| AGACTATAGTGTAGTAAGTC+AGG | 0.490539 | 1:-36812283 | None:intergenic |
| GACGTTTGATGTATGGAAAA+CGG | 0.491740 | 1:+36812048 | MsG0180002328.01.T01:CDS |
| CATCCCCTCGGTAGTCATGA+AGG | 0.493267 | 1:-36812116 | None:intergenic |
| CTAATTAGAGAAGATTCGAC+TGG | 0.496334 | 1:+36812604 | MsG0180002328.01.T01:CDS |
| TATCATTGCGGCTGGCTCTG+AGG | 0.502501 | 1:+36811229 | MsG0180002328.01.T01:CDS |
| CTCTGTTGATTTCATAACCA+AGG | 0.503875 | 1:+36811469 | MsG0180002328.01.T01:CDS |
| ATCATTGCGGCTGGCTCTGA+GGG | 0.505022 | 1:+36811230 | MsG0180002328.01.T01:CDS |
| CACTCTACTTTAAAGGAGCA+TGG | 0.505591 | 1:+36812020 | MsG0180002328.01.T01:CDS |
| TCTCTAATTAGAAATAAGAA+AGG | 0.509129 | 1:-36812592 | None:intergenic |
| AGAACTTCTTCCTCCAAGAT+CGG | 0.523770 | 1:+36811964 | MsG0180002328.01.T01:CDS |
| GTCAAACCTCCAGGAGTGAA+AGG | 0.524050 | 1:-36812409 | None:intergenic |
| TCACCTACTTCTGCTTCAGC+AGG | 0.528408 | 1:-36812310 | None:intergenic |
| CACTTGTCCAACAAAGAGAA+TGG | 0.528533 | 1:-36812629 | None:intergenic |
| CGTCCTGCTGAAGCAGAAGT+AGG | 0.536267 | 1:+36812307 | MsG0180002328.01.T01:CDS |
| CTCTAATTAGAAATAAGAAA+GGG | 0.536391 | 1:-36812591 | None:intergenic |
| TTTGGTTGGTGATTGATTCG+TGG | 0.536866 | 1:-36811112 | None:intergenic |
| TGCTAAGATCACTGATCAAG+AGG | 0.544299 | 1:-36812658 | None:intergenic |
| TCAGACGCCGCTTTCACTGG+CGG | 0.550246 | 1:+36811344 | MsG0180002328.01.T01:CDS |
| GCGAGGCCCGCCAGTGAAAG+CGG | 0.556128 | 1:-36811351 | None:intergenic |
| GAAATATATTAGAAACAGAA+AGG | 0.558448 | 1:-36812465 | None:intergenic |
| GTGCTAAGTATCATTGCGGC+TGG | 0.566527 | 1:+36811221 | MsG0180002328.01.T01:CDS |
| GAGGGAAACATTTGTTTGGT+TGG | 0.569951 | 1:-36811126 | None:intergenic |
| AAGCTATCAACCGATCTTGG+AGG | 0.570822 | 1:-36811974 | None:intergenic |
| AACCAAACAAATGTTTCCCT+CGG | 0.575261 | 1:+36811128 | MsG0180002328.01.T01:CDS |
| GGCGAGGTTGTTGAGATCAT+CGG | 0.582316 | 1:-36811297 | None:intergenic |
| ATGAATAAACTGCATCCCCT+CGG | 0.585021 | 1:-36812128 | None:intergenic |
| GTCGAGAAGCTGTTGTTGTG+TGG | 0.586119 | 1:-36811255 | None:intergenic |
| TTTGAATGGAAGCTCAGTGA+AGG | 0.587122 | 1:+36812090 | MsG0180002328.01.T01:CDS |
| TGCATTAGCAAAGATGAGGC+GGG | 0.588872 | 1:-36811999 | None:intergenic |
| AACAAATGTTTCCCTCGGCA+TGG | 0.592617 | 1:+36811133 | MsG0180002328.01.T01:CDS |
| ACAGATGTTTGGCCATGCCG+AGG | 0.599139 | 1:-36811145 | None:intergenic |
| CAGATGTTTGGCCATGCCGA+GGG | 0.601831 | 1:-36811144 | None:intergenic |
| TCGAGAAGCTGTTGTTGTGT+GGG | 0.605173 | 1:-36811254 | None:intergenic |
| GACGATAGAAACAAGGTGAG+AGG | 0.606218 | 1:-36811318 | None:intergenic |
| AGCACAACTTGGAGCAACAA+TGG | 0.608333 | 1:-36811203 | None:intergenic |
| ATCCCCTCGGTAGTCATGAA+GGG | 0.614506 | 1:-36812115 | None:intergenic |
| TATGTTGAAGGAGTTAGGAG+TGG | 0.615125 | 1:+36812381 | MsG0180002328.01.T01:CDS |
| CTGAGAGGACGATAGAAACA+AGG | 0.615824 | 1:-36811325 | None:intergenic |
| GTGCATTAGCAAAGATGAGG+CGG | 0.619571 | 1:-36812000 | None:intergenic |
| GATCATCGGTGGATTTGGAA+CGG | 0.619697 | 1:-36811283 | None:intergenic |
| CAGTGAAAGCGGCGTCTGAG+AGG | 0.622496 | 1:-36811340 | None:intergenic |
| GTTCCCTTCATGACTACCGA+GGG | 0.638567 | 1:+36812112 | MsG0180002328.01.T01:CDS |
| AGAGTGCATTAGCAAAGATG+AGG | 0.641780 | 1:-36812003 | None:intergenic |
| CAAAGATGGACTGTTAGCAT+TGG | 0.645848 | 1:+36812240 | MsG0180002328.01.T01:CDS |
| CATCGGTGGATTTGGAACGG+AGG | 0.663201 | 1:-36811280 | None:intergenic |
| GAGGTTGTTGAGATCATCGG+TGG | 0.666044 | 1:-36811294 | None:intergenic |
| TAGAAACAAGGTGAGAGGCG+AGG | 0.684792 | 1:-36811313 | None:intergenic |
| GGTTCCCTTCATGACTACCG+AGG | 0.692485 | 1:+36812111 | MsG0180002328.01.T01:CDS |
| CTTGGTTATGAAATCAACAG+AGG | 0.695380 | 1:-36811468 | None:intergenic |
| ATACACCATCAACAAAAGAG+AGG | 0.697514 | 1:-36811373 | None:intergenic |
| CCATCAACAAAAGAGAGGCG+AGG | 0.704628 | 1:-36811368 | None:intergenic |
| AGTTGTGCTAAGTATCATTG+CGG | 0.711501 | 1:+36811217 | MsG0180002328.01.T01:CDS |
| TTCCCTTCATGACTACCGAG+GGG | 0.739663 | 1:+36812113 | MsG0180002328.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTCATGTAAATTAATTTA+AGG | + | Chr1:36811588-36811607 | MsG0180002328.01.T01:intron | 10.0% |
| !! | TTTCATGTAAATTAATTTAA+GGG | + | Chr1:36811589-36811608 | MsG0180002328.01.T01:intron | 10.0% |
| !!! | TGTTTTTATTTTATTTTTGA+TGG | - | Chr1:36811554-36811573 | None:intergenic | 10.0% |
| !! | AAAAAAAATCTATAGTACTA+AGG | + | Chr1:36811711-36811730 | MsG0180002328.01.T01:intron | 15.0% |
| !! | AATTTACATGAAATAAAAAC+AGG | - | Chr1:36811582-36811601 | None:intergenic | 15.0% |
| !! | GTGAAAAAAACAAAAAAAAA+GGG | - | Chr1:36811511-36811530 | None:intergenic | 15.0% |
| !! | TGTGAAAAAAACAAAAAAAA+AGG | - | Chr1:36811512-36811531 | None:intergenic | 15.0% |
| !!! | ACTGATTTTTAAATTTGATA+TGG | + | Chr1:36811871-36811890 | MsG0180002328.01.T01:intron | 15.0% |
| !! | CTCTAATTAGAAATAAGAAA+GGG | - | Chr1:36812594-36812613 | None:intergenic | 20.0% |
| !! | GAAATATATTAGAAACAGAA+AGG | - | Chr1:36812468-36812487 | None:intergenic | 20.0% |
| !! | GATTAAAGAAGTGAATTTAT+GGG | + | Chr1:36811913-36811932 | MsG0180002328.01.T01:CDS | 20.0% |
| !! | GTGAAAATTAAACCAATAAA+AGG | + | Chr1:36811795-36811814 | MsG0180002328.01.T01:intron | 20.0% |
| !! | TCTCTAATTAGAAATAAGAA+AGG | - | Chr1:36812595-36812614 | None:intergenic | 20.0% |
| !! | TGATTAAAGAAGTGAATTTA+TGG | + | Chr1:36811912-36811931 | MsG0180002328.01.T01:CDS | 20.0% |
| !!! | AACATAAGAAAACCTTTTAT+TGG | - | Chr1:36811810-36811829 | None:intergenic | 20.0% |
| !!! | ACTATAGATTTTTTTTGAAG+AGG | - | Chr1:36811707-36811726 | None:intergenic | 20.0% |
| !!! | TCATATGAAATTTTGAATCT+TGG | - | Chr1:36812346-36812365 | None:intergenic | 20.0% |
| ! | GGACAAAGTAGATTTATAAT+TGG | - | Chr1:36811450-36811469 | None:intergenic | 25.0% |
| ! | TGATGCTAGAAAACAATAAA+GGG | - | Chr1:36811753-36811772 | None:intergenic | 25.0% |
| ! | TTCATTGAAGTAAATGAAGA+AGG | + | Chr1:36812496-36812515 | MsG0180002328.01.T01:CDS | 25.0% |
| ! | TTCCTTAATCAATGTAGAAT+TGG | - | Chr1:36811643-36811662 | None:intergenic | 25.0% |
| ! | TTGATGCTAGAAAACAATAA+AGG | - | Chr1:36811754-36811773 | None:intergenic | 25.0% |
| !! | TACCAATTCTACATTGATTA+AGG | + | Chr1:36811638-36811657 | MsG0180002328.01.T01:intron | 25.0% |
| !! | TATGATTTTCACCTTTTGAA+TGG | + | Chr1:36812076-36812095 | MsG0180002328.01.T01:CDS | 25.0% |
| CAATGTAGAATTGGTATACT+AGG | - | Chr1:36811634-36811653 | None:intergenic | 30.0% | |
| CTTCGTCTTCTTTATAAGAA+AGG | + | Chr1:36812172-36812191 | MsG0180002328.01.T01:CDS | 30.0% | |
| GAGGAAGAAGTTCTTTAATA+AGG | - | Chr1:36811958-36811977 | None:intergenic | 30.0% | |
| TGAAACTTCTCATATGTTGA+AGG | + | Chr1:36812369-36812388 | MsG0180002328.01.T01:CDS | 30.0% | |
| AACCAAACAAATGTTTCCCT+CGG | + | Chr1:36811128-36811147 | MsG0180002328.01.T01:CDS | 35.0% | |
| AGACTATAGTGTAGTAAGTC+AGG | - | Chr1:36812286-36812305 | None:intergenic | 35.0% | |
| AGTTGTGCTAAGTATCATTG+CGG | + | Chr1:36811217-36811236 | MsG0180002328.01.T01:CDS | 35.0% | |
| ATACACCATCAACAAAAGAG+AGG | - | Chr1:36811376-36811395 | None:intergenic | 35.0% | |
| CAATGATACTTAGCACAACT+TGG | - | Chr1:36811217-36811236 | None:intergenic | 35.0% | |
| CTAATTAGAGAAGATTCGAC+TGG | + | Chr1:36812604-36812623 | MsG0180002328.01.T01:CDS | 35.0% | |
| CTTGGTTATGAAATCAACAG+AGG | - | Chr1:36811471-36811490 | None:intergenic | 35.0% | |
| GACGTTTGATGTATGGAAAA+CGG | + | Chr1:36812048-36812067 | MsG0180002328.01.T01:CDS | 35.0% | |
| GCTAATGCACTCTACTTTAA+AGG | + | Chr1:36812013-36812032 | MsG0180002328.01.T01:CDS | 35.0% | |
| TCTCATATGTTGAAGGAGTT+AGG | + | Chr1:36812376-36812395 | MsG0180002328.01.T01:CDS | 35.0% | |
| TGCTAGAAAACAATAAAGGG+AGG | - | Chr1:36811750-36811769 | None:intergenic | 35.0% | |
| TTCTTTCGAGAACAGATGTT+TGG | - | Chr1:36811159-36811178 | None:intergenic | 35.0% | |
| ! | GGAAGACAAGATTCTTTTGA+AGG | - | Chr1:36811429-36811448 | None:intergenic | 35.0% |
| ! | TAACAAAGTGTTTCGTCACA+TGG | - | Chr1:36811680-36811699 | None:intergenic | 35.0% |
| !! | CTCTGTTGATTTCATAACCA+AGG | + | Chr1:36811469-36811488 | MsG0180002328.01.T01:CDS | 35.0% |
| !! | GACAAGATTCTTTTGAAGGA+AGG | - | Chr1:36811425-36811444 | None:intergenic | 35.0% |
| !!! | CTCTTTTGTTGATGGTGTAT+GGG | + | Chr1:36811376-36811395 | MsG0180002328.01.T01:CDS | 35.0% |
| !!! | TCTCTTTTGTTGATGGTGTA+TGG | + | Chr1:36811375-36811394 | MsG0180002328.01.T01:CDS | 35.0% |
| ACTGGAACCATTCTCTTTGT+TGG | + | Chr1:36812622-36812641 | MsG0180002328.01.T01:CDS | 40.0% | |
| AGAACTTCTTCCTCCAAGAT+CGG | + | Chr1:36811964-36811983 | MsG0180002328.01.T01:CDS | 40.0% | |
| AGAGTGCATTAGCAAAGATG+AGG | - | Chr1:36812006-36812025 | None:intergenic | 40.0% | |
| ATGAATAAACTGCATCCCCT+CGG | - | Chr1:36812131-36812150 | None:intergenic | 40.0% | |
| CAATGCTAACAGTCCATCTT+TGG | - | Chr1:36812242-36812261 | None:intergenic | 40.0% | |
| CACTTGTCCAACAAAGAGAA+TGG | - | Chr1:36812632-36812651 | None:intergenic | 40.0% | |
| GAAGGAAGGTTGAAGAGAAA+GGG | - | Chr1:36811411-36811430 | None:intergenic | 40.0% | |
| GAGGGAAACATTTGTTTGGT+TGG | - | Chr1:36811129-36811148 | None:intergenic | 40.0% | |
| GGAATCAGACGTTTGATGTA+TGG | + | Chr1:36812041-36812060 | MsG0180002328.01.T01:CDS | 40.0% | |
| GTTAAGCTATCAACCGATCT+TGG | - | Chr1:36811980-36811999 | None:intergenic | 40.0% | |
| TATGTTGAAGGAGTTAGGAG+TGG | + | Chr1:36812381-36812400 | MsG0180002328.01.T01:CDS | 40.0% | |
| TCACTGAGCTTCCATTCAAA+AGG | - | Chr1:36812090-36812109 | None:intergenic | 40.0% | |
| TCCTGGAGGTTTGACAAAAA+TGG | + | Chr1:36812417-36812436 | MsG0180002328.01.T01:CDS | 40.0% | |
| TGAAGGAAGGTTGAAGAGAA+AGG | - | Chr1:36811412-36811431 | None:intergenic | 40.0% | |
| TGGAGGTTTGACAAAAATGG+TGG | + | Chr1:36812420-36812439 | MsG0180002328.01.T01:CDS | 40.0% | |
| TTTCTTCCAGATGCCAAAGA+TGG | + | Chr1:36812226-36812245 | MsG0180002328.01.T01:CDS | 40.0% | |
| TTTGAATGGAAGCTCAGTGA+AGG | + | Chr1:36812090-36812109 | MsG0180002328.01.T01:CDS | 40.0% | |
| ! | CACTCTACTTTAAAGGAGCA+TGG | + | Chr1:36812020-36812039 | MsG0180002328.01.T01:CDS | 40.0% |
| !! | ACCATTTTTGTCAAACCTCC+AGG | - | Chr1:36812421-36812440 | None:intergenic | 40.0% |
| !! | CAAAGATGGACTGTTAGCAT+TGG | + | Chr1:36812240-36812259 | MsG0180002328.01.T01:CDS | 40.0% |
| !! | TTTGGTTGGTGATTGATTCG+TGG | - | Chr1:36811115-36811134 | None:intergenic | 40.0% |
| AACAAATGTTTCCCTCGGCA+TGG | + | Chr1:36811133-36811152 | MsG0180002328.01.T01:CDS | 45.0% | |
| AACAGTCCATCTTTGGCATC+TGG | - | Chr1:36812235-36812254 | None:intergenic | 45.0% | |
| AAGCTATCAACCGATCTTGG+AGG | - | Chr1:36811977-36811996 | None:intergenic | 45.0% | |
| AGCACAACTTGGAGCAACAA+TGG | - | Chr1:36811206-36811225 | None:intergenic | 45.0% | |
| CTGAGAGGACGATAGAAACA+AGG | - | Chr1:36811328-36811347 | None:intergenic | 45.0% | |
| GACGATAGAAACAAGGTGAG+AGG | - | Chr1:36811321-36811340 | None:intergenic | 45.0% | |
| GAGCTGTGTAACACAAACCT+TGG | - | Chr1:36811489-36811508 | None:intergenic | 45.0% | |
| GTGCATTAGCAAAGATGAGG+CGG | - | Chr1:36812003-36812022 | None:intergenic | 45.0% | |
| TCGAGAAGCTGTTGTTGTGT+GGG | - | Chr1:36811257-36811276 | None:intergenic | 45.0% | |
| TGCATTAGCAAAGATGAGGC+GGG | - | Chr1:36812002-36812021 | None:intergenic | 45.0% | |
| TGCCGAGGGAAACATTTGTT+TGG | - | Chr1:36811133-36811152 | None:intergenic | 45.0% | |
| TGGGCTGAAAAAGAGACGAA+TGG | + | Chr1:36811932-36811951 | MsG0180002328.01.T01:CDS | 45.0% | |
| TTCGTCACATGGCACATACA+TGG | - | Chr1:36811669-36811688 | None:intergenic | 45.0% | |
| ! | GATCATCGGTGGATTTGGAA+CGG | - | Chr1:36811286-36811305 | None:intergenic | 45.0% |
| ! | GTTGAGATCATCGGTGGATT+TGG | - | Chr1:36811291-36811310 | None:intergenic | 45.0% |
| ! | GTTTTACCTTTCACTCCTGG+AGG | + | Chr1:36812403-36812422 | MsG0180002328.01.T01:CDS | 45.0% |
| !! | AGATGGACTGTTAGCATTGG+TGG | + | Chr1:36812243-36812262 | MsG0180002328.01.T01:CDS | 45.0% |
| !! | ATGGTGGACTCTTCTCTTGT+TGG | + | Chr1:36812436-36812455 | MsG0180002328.01.T01:CDS | 45.0% |
| !! | GTGGTTTTACCTTTCACTCC+TGG | + | Chr1:36812400-36812419 | MsG0180002328.01.T01:CDS | 45.0% |
| !! | GTTAGCATTGGTGGAGAAGT+TGG | + | Chr1:36812252-36812271 | MsG0180002328.01.T01:CDS | 45.0% |
| ATCCCCTCGGTAGTCATGAA+GGG | - | Chr1:36812118-36812137 | None:intergenic | 50.0% | |
| CCATCAACAAAAGAGAGGCG+AGG | - | Chr1:36811371-36811390 | None:intergenic | 50.0% | |
| GAGGTTGTTGAGATCATCGG+TGG | - | Chr1:36811297-36811316 | None:intergenic | 50.0% | |
| GGCGAGGTTGTTGAGATCAT+CGG | - | Chr1:36811300-36811319 | None:intergenic | 50.0% | |
| GTCAAACCTCCAGGAGTGAA+AGG | - | Chr1:36812412-36812431 | None:intergenic | 50.0% | |
| GTCGAGAAGCTGTTGTTGTG+TGG | - | Chr1:36811258-36811277 | None:intergenic | 50.0% | |
| GTGCTAAGTATCATTGCGGC+TGG | + | Chr1:36811221-36811240 | MsG0180002328.01.T01:CDS | 50.0% | |
| GTTCCCTTCATGACTACCGA+GGG | + | Chr1:36812112-36812131 | MsG0180002328.01.T01:CDS | 50.0% | |
| TAGAAACAAGGTGAGAGGCG+AGG | - | Chr1:36811316-36811335 | None:intergenic | 50.0% | |
| TCACCTACTTCTGCTTCAGC+AGG | - | Chr1:36812313-36812332 | None:intergenic | 50.0% | |
| TTCCCTTCATGACTACCGAG+GGG | + | Chr1:36812113-36812132 | MsG0180002328.01.T01:CDS | 50.0% | |
| ! | CCTCGCCTCTCTTTTGTTGA+TGG | + | Chr1:36811368-36811387 | MsG0180002328.01.T01:CDS | 50.0% |
| ACAGATGTTTGGCCATGCCG+AGG | - | Chr1:36811148-36811167 | None:intergenic | 55.0% | |
| CAGATGTTTGGCCATGCCGA+GGG | - | Chr1:36811147-36811166 | None:intergenic | 55.0% | |
| CATCCCCTCGGTAGTCATGA+AGG | - | Chr1:36812119-36812138 | None:intergenic | 55.0% | |
| CGTCCTGCTGAAGCAGAAGT+AGG | + | Chr1:36812307-36812326 | MsG0180002328.01.T01:CDS | 55.0% | |
| GGTTCCCTTCATGACTACCG+AGG | + | Chr1:36812111-36812130 | MsG0180002328.01.T01:CDS | 55.0% | |
| ! | CATCGGTGGATTTGGAACGG+AGG | - | Chr1:36811283-36811302 | None:intergenic | 55.0% |
| !! | ATCATTGCGGCTGGCTCTGA+GGG | + | Chr1:36811230-36811249 | MsG0180002328.01.T01:CDS | 55.0% |
| !! | TATCATTGCGGCTGGCTCTG+AGG | + | Chr1:36811229-36811248 | MsG0180002328.01.T01:CDS | 55.0% |
| CAGTGAAAGCGGCGTCTGAG+AGG | - | Chr1:36811343-36811362 | None:intergenic | 60.0% | |
| GAAGCTGCTGCAGCTAGTGC+TGG | + | Chr1:36812523-36812542 | MsG0180002328.01.T01:CDS | 60.0% | |
| ! | CTCTCAGACGCCGCTTTCAC+TGG | + | Chr1:36811341-36811360 | MsG0180002328.01.T01:CDS | 60.0% |
| ! | TCAGACGCCGCTTTCACTGG+CGG | + | Chr1:36811344-36811363 | MsG0180002328.01.T01:CDS | 60.0% |
| ! | CAGACGCCGCTTTCACTGGC+GGG | + | Chr1:36811345-36811364 | MsG0180002328.01.T01:CDS | 65.0% |
| GCGAGGCCCGCCAGTGAAAG+CGG | - | Chr1:36811354-36811373 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 36811080 | 36812672 | 36811080 | ID=MsG0180002328.01;Name=MsG0180002328.01 |
| Chr1 | mRNA | 36811080 | 36812672 | 36811080 | ID=MsG0180002328.01.T01;Parent=MsG0180002328.01;Name=MsG0180002328.01.T01;_AED=0.29;_eAED=0.29;_QI=0|0|0|1|1|1|2|0|393 |
| Chr1 | exon | 36811080 | 36811490 | 36811080 | ID=MsG0180002328.01.T01:exon:1081;Parent=MsG0180002328.01.T01 |
| Chr1 | exon | 36811902 | 36812672 | 36811902 | ID=MsG0180002328.01.T01:exon:1082;Parent=MsG0180002328.01.T01 |
| Chr1 | CDS | 36811080 | 36811490 | 36811080 | ID=MsG0180002328.01.T01:cds;Parent=MsG0180002328.01.T01 |
| Chr1 | CDS | 36811902 | 36812672 | 36811902 | ID=MsG0180002328.01.T01:cds;Parent=MsG0180002328.01.T01 |
| Gene Sequence |
| Protein sequence |
