AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013379.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013379.01.T01 MTR_5g089110 50.951 263 61 7 1 195 59 321 4.83e-76 233
MsG0380013379.01.T01 MTR_5g089110 50.190 263 63 7 1 195 59 321 8.13e-74 229
MsG0380013379.01.T01 MTR_7g089640 50.000 252 68 6 1 195 66 316 3.84e-63 201
MsG0380013379.01.T01 MTR_3g436860 94.737 95 4 1 102 195 163 257 3.11e-62 197
MsG0380013379.01.T01 MTR_3g436860 86.538 104 14 0 1 104 1 104 7.00e-57 184
MsG0380013379.01.T01 MTR_3g436860 94.737 95 4 1 102 195 228 322 3.13e-62 199
MsG0380013379.01.T01 MTR_3g436860 86.538 104 14 0 1 104 66 169 1.14e-56 184
MsG0380013379.01.T01 MTR_7g089670 36.245 229 92 5 19 195 11 237 4.64e-40 140
MsG0380013379.01.T01 MTR_7g089730 37.826 230 86 6 22 195 10 238 2.27e-37 132
MsG0380013379.01.T01 MTR_7g089720 33.766 231 100 4 15 193 12 241 1.46e-34 125
MsG0380013379.01.T01 MTR_7g089700 33.333 225 97 4 21 193 19 242 1.04e-31 118
MsG0380013379.01.T01 MTR_6g039460 32.000 225 100 5 21 193 18 241 3.40e-28 108
MsG0380013379.01.T01 MTR_6g039470 43.243 74 42 0 21 94 90 163 2.99e-16 75.5
MsG0380013379.01.T01 MTR_7g089560 58.571 70 28 1 1 69 54 123 2.60e-12 62.4
MsG0380013379.01.T02 MTR_3g436860 89.062 64 7 0 74 137 272 335 1.54e-35 125
MsG0380013379.01.T02 MTR_5g089110 79.365 63 13 0 75 137 337 399 8.16e-30 111
MsG0380013379.01.T02 MTR_7g089640 61.290 62 24 0 76 137 333 394 4.55e-23 93.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013379.01.T01 AT2G32560 43.852 244 77 5 10 193 48 291 4.30e-62 197
MsG0380013379.01.T01 AT2G32560 43.852 244 77 5 10 193 48 291 1.84e-61 196
MsG0380013379.01.T01 AT2G26850 44.444 243 75 5 13 195 51 293 1.92e-59 191
MsG0380013379.01.T01 AT2G26850 43.162 234 74 4 13 187 51 284 9.39e-56 179
MsG0380013379.01.T01 AT2G41170 60.000 95 36 2 102 195 201 294 5.86e-36 130
MsG0380013379.01.T01 AT2G41170 57.317 82 35 0 9 90 44 125 5.99e-18 81.6
MsG0380013379.01.T01 AT2G41170 60.000 95 36 2 102 195 201 294 6.11e-36 131
MsG0380013379.01.T01 AT2G41170 57.317 82 35 0 9 90 44 125 5.42e-18 82.0
MsG0380013379.01.T01 AT2G41170 58.621 87 35 1 102 188 201 286 4.76e-32 118
MsG0380013379.01.T01 AT2G41170 57.317 82 35 0 9 90 44 125 1.89e-18 82.4
MsG0380013379.01.T02 AT2G26850 63.492 63 23 0 75 137 309 371 7.00e-24 95.1
MsG0380013379.01.T02 AT2G32560 61.905 63 23 1 75 137 310 371 2.53e-21 88.2
MsG0380013379.01.T02 AT2G41170 54.412 68 31 0 70 137 337 404 3.89e-21 87.8
MsG0380013379.01.T02 AT2G41170 54.839 62 28 0 76 137 310 371 2.26e-19 82.8

Find 80 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAAACTATTCAACTAAAA+TGG 0.148524 3:+36429628 None:intergenic
TTATTGGTCAAGCTGCTTAT+AGG 0.268138 3:-36432191 MsG0380013379.01.T01:CDS
GGTGGTATGGTGTGGGTCAC+TGG 0.270516 3:-36429983 MsG0380013379.01.T01:CDS
AAGAAATGGGGTGGAGTTAT+TGG 0.308285 3:-36432207 MsG0380013379.01.T01:CDS
TATTGGTCAAGCTGCTTATA+GGG 0.310671 3:-36432190 MsG0380013379.01.T01:CDS
AGAAAATTTACCTTGCTAGA+AGG 0.316417 3:+36431476 None:intergenic
TTGAGAAGAGGAAAAGATTA+TGG 0.334808 3:-36427902 MsG0380013379.01.T02:CDS
GATGTGTGAGTGATTACTTT+TGG 0.341820 3:-36432245 MsG0380013379.01.T01:CDS
TGAAACTATTCAACTAAAAT+GGG 0.358651 3:+36429629 None:intergenic
TTACCTTGCTAGAAGGGTAT+TGG 0.378676 3:+36431483 None:intergenic
AGAGACACATGAAGAAGAAA+TGG 0.390116 3:-36432221 MsG0380013379.01.T01:CDS
GGGTGTTGGGAGTCTTAATA+TGG 0.393351 3:-36432139 MsG0380013379.01.T01:CDS
ATGAGAATGAAATTTCCATT+TGG 0.398780 3:-36427098 MsG0380013379.01.T02:CDS
TGAGGAGAAGTTATCATTGT+TGG 0.399408 3:-36432361 MsG0380013379.01.T01:CDS
GGAGACAGACTAGGATCAAT+AGG 0.403977 3:-36427185 MsG0380013379.01.T02:CDS
CAGCATCATAGCAAGATAAC+AGG 0.411746 3:+36431527 None:intergenic
CCTCATTTCCTTCTTCCCTA+TGG 0.423036 3:+36427157 None:intergenic
TCAACAAAGTTGTCATCAAA+TGG 0.424811 3:+36429868 None:intergenic
TGTTTAAATGATTTGCATCC+TGG 0.435950 3:-36431029 MsG0380013379.01.T01:CDS
CTAAAAGATTCCACATATGT+AGG 0.436858 3:+36429583 None:intergenic
AATTCACACAAGGATGTCTA+TGG 0.439355 3:-36432427 None:intergenic
TGATCATGTTGAAGAGATTG+AGG 0.446335 3:-36432379 MsG0380013379.01.T01:CDS
GTCTGTCTCCATCTTGAGCC+AGG 0.453925 3:+36427198 None:intergenic
GAAAATTTACCTTGCTAGAA+GGG 0.455807 3:+36431477 None:intergenic
AGAAGAGAAGCTAGAGAGTG+TGG 0.460514 3:-36431119 MsG0380013379.01.T01:CDS
GAGACACATGAAGAAGAAAT+GGG 0.464075 3:-36432220 MsG0380013379.01.T01:CDS
CACATCTCTCCCTCAATGAA+TGG 0.467643 3:+36432262 None:intergenic
TCATGTGGAGAGATATCAAC+AGG 0.476304 3:+36431068 None:intergenic
GTGTTGTAGAATGGTCATCT+TGG 0.481169 3:-36431553 MsG0380013379.01.T01:intron
GTCAAGCTGCTTATAGGGAA+TGG 0.482088 3:-36432185 MsG0380013379.01.T01:CDS
TGGCCACATGCGTTTCCAAA+TGG 0.484507 3:+36427083 None:intergenic
GGACTTGCCAGAGCTAACTT+TGG 0.486829 3:-36432340 MsG0380013379.01.T01:CDS
TTTGTCGCAGGTTGGTGGTA+TGG 0.487421 3:-36429996 MsG0380013379.01.T01:intron
ATAAATACCAATCATACAAA+AGG 0.492788 3:+36429700 None:intergenic
CATTGCCGCTGTCATAATAG+TGG 0.494627 3:-36429937 MsG0380013379.01.T01:CDS
CTGCTTATAGGGAATGGAAA+TGG 0.494975 3:-36432179 MsG0380013379.01.T01:CDS
AGGAAAGACCATAGGGAAGA+AGG 0.498899 3:-36427165 MsG0380013379.01.T02:CDS
CATGTGGCCATCTGAAGTCT+TGG 0.498956 3:-36427070 MsG0380013379.01.T02:CDS
TGGTGTTTGCCATTCATTGA+GGG 0.502353 3:-36432271 MsG0380013379.01.T01:CDS
CGCAGGTTGGTGGTATGGTG+TGG 0.514513 3:-36429991 MsG0380013379.01.T01:intron
CAATACCCTCCCTACATATG+TGG 0.515537 3:-36429593 MsG0380013379.01.T01:three_prime_UTR
GGATCAATAGGAAAGACCAT+AGG 0.516464 3:-36427173 MsG0380013379.01.T02:CDS
TGAATCTCTATGTGATTGCC+AGG 0.537023 3:+36431011 None:intergenic
ATGCATTCCAAAGTTAGCTC+TGG 0.537840 3:+36432333 None:intergenic
ACTAATTTAGAATTGAGAAG+AGG 0.539400 3:-36427914 MsG0380013379.01.T02:CDS
TAAAAGATTCCACATATGTA+GGG 0.544752 3:+36429584 None:intergenic
TACTAATCCAAGACTTCAGA+TGG 0.551802 3:+36427063 None:intergenic
GCAGGTTGGTGGTATGGTGT+GGG 0.553313 3:-36429990 MsG0380013379.01.T01:intron
GCTTCTCTTCTTCCATGTGA+AGG 0.555732 3:+36431131 None:intergenic
CTAGAGAGTGTGGAATTCCA+TGG 0.556251 3:-36431109 MsG0380013379.01.T01:CDS
GATCAATAGGAAAGACCATA+GGG 0.556971 3:-36427172 MsG0380013379.01.T02:CDS
ATTACACTCCTGGCTCAAGA+TGG 0.564696 3:-36427206 MsG0380013379.01.T02:CDS
GAGTTCAACCATTACACTCC+TGG 0.567077 3:-36427216 MsG0380013379.01.T02:CDS
CTGGTGTTTGCCATTCATTG+AGG 0.574818 3:-36432272 MsG0380013379.01.T01:CDS
ATCTTGAGCCAGGAGTGTAA+TGG 0.578616 3:+36427208 None:intergenic
GAAGAAGGAAATGAGGCTGA+TGG 0.579595 3:-36427150 MsG0380013379.01.T02:CDS
AGAAGAGGAAAAGATTATGG+TGG 0.581470 3:-36427899 MsG0380013379.01.T02:CDS
AGATTCCACATATGTAGGGA+GGG 0.587787 3:+36429588 None:intergenic
TGTTATAGGTATCCTTCACA+TGG 0.589247 3:-36431143 MsG0380013379.01.T01:intron
TTTCCATTTGGAAACGCATG+TGG 0.589957 3:-36427086 MsG0380013379.01.T02:CDS
AGTGTGGAATTCCATGGGAA+AGG 0.593828 3:-36431103 MsG0380013379.01.T01:CDS
GCTCAAGATGGAGACAGACT+AGG 0.596676 3:-36427194 MsG0380013379.01.T02:CDS
GCAATCACATAGAGATTCAG+TGG 0.599756 3:-36431007 MsG0380013379.01.T01:CDS
ATGTAGGGAGGGTATTGCAC+GGG 0.602043 3:+36429599 None:intergenic
CCATAGGGAAGAAGGAAATG+AGG 0.610009 3:-36427157 MsG0380013379.01.T02:CDS
GTCAAAATATCAATACTCAA+AGG 0.610621 3:+36429893 None:intergenic
TAGAGAGTGTGGAATTCCAT+GGG 0.616811 3:-36431108 MsG0380013379.01.T01:CDS
CACATGAAGAAGAAATGGGG+TGG 0.618879 3:-36432216 MsG0380013379.01.T01:CDS
TCAGAGATATGAAGATCATG+TGG 0.622183 3:+36431053 None:intergenic
AAGATTCCACATATGTAGGG+AGG 0.625819 3:+36429587 None:intergenic
GGTGCTCTTAGCCTTTCCCA+TGG 0.627050 3:+36431092 None:intergenic
TATGTAGGGAGGGTATTGCA+CGG 0.641681 3:+36429598 None:intergenic
GAACCAATACCCTTCTAGCA+AGG 0.643683 3:-36431486 MsG0380013379.01.T01:intron
GAAACTATTCAACTAAAATG+GGG 0.646262 3:+36429630 None:intergenic
ACACAAGGATGTCTATGGTG+AGG 0.658567 3:-36432422 None:intergenic
GTATGATAGGGAAATTGCAG+TGG 0.662662 3:-36427946 MsG0380013379.01.T02:intron
AGACACATGAAGAAGAAATG+GGG 0.695841 3:-36432219 MsG0380013379.01.T01:CDS
ATCACATAGAGATTCAGTGG+AGG 0.714698 3:-36431004 MsG0380013379.01.T01:CDS
ACTCACCACTATTATGACAG+CGG 0.716820 3:+36429932 None:intergenic
TGTGGAGAGATATCAACAGG+AGG 0.726181 3:+36431071 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATAAATATATCAAAATG+TGG - Chr3:36430388-36430407 MsG0380013379.01.T01:intron 10.0%
!! TTTAAGAATGAAATTTAAAA+GGG - Chr3:36430693-36430712 MsG0380013379.01.T01:intron 10.0%
!!! AACTAAAAATTGATTTATTT+CGG + Chr3:36431829-36431848 None:intergenic 10.0%
!!! ACTAAAAAATTGATTTATTT+CGG - Chr3:36430896-36430915 MsG0380013379.01.T01:intron 10.0%
!!! AGTTTTATTAAAAAAACATT+AGG - Chr3:36430962-36430981 MsG0380013379.01.T01:intron 10.0%
!!! ATGAAAATTTTGAAATAAAT+AGG - Chr3:36430818-36430837 MsG0380013379.01.T01:intron 10.0%
!!! GTTTTATTAAAAAAACATTA+GGG - Chr3:36430963-36430982 MsG0380013379.01.T01:intron 10.0%
!!! TAATAATTTCAACATTTTAT+CGG - Chr3:36429404-36429423 MsG0380013379.01.T02:intron 10.0%
!!! TTTTAAGAATGAAATTTAAA+AGG - Chr3:36430692-36430711 MsG0380013379.01.T01:intron 10.0%
!! AAAGATAATACTAAAAATGA+CGG - Chr3:36429944-36429963 MsG0380013379.01.T01:CDS 15.0%
!! ATATATATAGAGTTATAAAG+AGG - Chr3:36430018-36430037 MsG0380013379.01.T01:intron 15.0%
!! GGAACAAATATAAAATTTAA+TGG + Chr3:36430539-36430558 None:intergenic 15.0%
!! TAGTTAATAGAATTAATACA+TGG + Chr3:36428556-36428575 None:intergenic 15.0%
!! TCTAAATATATATCAAAATG+TGG - Chr3:36430352-36430371 MsG0380013379.01.T01:intron 15.0%
!!! AATTTTCATAACAAATTAGA+TGG + Chr3:36427748-36427767 None:intergenic 15.0%
!!! AGATTTATTCAAATTTTGTT+AGG + Chr3:36431763-36431782 None:intergenic 15.0%
!!! ATAAATCAATTTTTAGTTAG+AGG - Chr3:36431831-36431850 MsG0380013379.01.T01:intron 15.0%
!!! GATTTATTCAAATTTTGTTA+GGG + Chr3:36431762-36431781 None:intergenic 15.0%
!!! GATTTTTTTTCTTTGTTATT+GGG - Chr3:36431078-36431097 MsG0380013379.01.T01:CDS 15.0%
!!! TAAATCAATTTTTTAGTTAG+AGG + Chr3:36430893-36430912 None:intergenic 15.0%
!!! TAATTTATGTTGTTTGTTTT+TGG - Chr3:36431647-36431666 MsG0380013379.01.T01:intron 15.0%
!!! TATTTTATTAACCTTATGAA+TGG - Chr3:36429455-36429474 MsG0380013379.01.T02:intron 15.0%
!!! TCAAGACAAATTTTTATTTA+TGG + Chr3:36428171-36428190 None:intergenic 15.0%
!!! TGATTTTTTTTCTTTGTTAT+TGG - Chr3:36431077-36431096 MsG0380013379.01.T01:CDS 15.0%
!!! TGTTTTTTTAATAAAACTGA+CGG + Chr3:36430960-36430979 None:intergenic 15.0%
!!! TTATTTTCAATGGAATTTAA+TGG - Chr3:36427862-36427881 MsG0380013379.01.T02:intron 15.0%
!! AAATAAATAAATACCGGAAA+AGG - Chr3:36431905-36431924 MsG0380013379.01.T01:intron 20.0%
!! AAATATAACGTAAAAAGTAG+TGG + Chr3:36432198-36432217 None:intergenic 20.0%
!! AAATGAAAAAGGAATATTGA+TGG - Chr3:36431510-36431529 MsG0380013379.01.T01:CDS 20.0%
!! AATATAACGTAAAAAGTAGT+GGG + Chr3:36432197-36432216 None:intergenic 20.0%
!! AATGAAAAAGGAATATTGAT+GGG - Chr3:36431511-36431530 MsG0380013379.01.T01:CDS 20.0%
!! AATTATGAGAAATGATATGT+TGG - Chr3:36428949-36428968 MsG0380013379.01.T02:intron 20.0%
!! ACATGTATTTATATGTTTCA+CGG + Chr3:36430609-36430628 None:intergenic 20.0%
!! AGAAAAAAAGAATTTCCTTA+TGG - Chr3:36428498-36428517 MsG0380013379.01.T02:intron 20.0%
!! ATAAATACCAATCATACAAA+AGG + Chr3:36429782-36429801 None:intergenic 20.0%
!! ATGAAACTATTCAACTAAAA+TGG + Chr3:36429854-36429873 None:intergenic 20.0%
!! ATTAATGTAGTTCAAATAAG+TGG - Chr3:36427628-36427647 MsG0380013379.01.T02:intron 20.0%
!! ATTGCATCAAATTTAAATCA+AGG - Chr3:36431990-36432009 MsG0380013379.01.T01:intron 20.0%
!! ATTGGTTAAACAACTTAAAA+TGG + Chr3:36428252-36428271 None:intergenic 20.0%
!! CAAAATTTGAATAAATCTGA+CGG - Chr3:36431765-36431784 MsG0380013379.01.T01:intron 20.0%
!! GGAATCTATTATGTATTAAT+TGG - Chr3:36428066-36428085 MsG0380013379.01.T02:intron 20.0%
!! GTCACAATAATCTTAAAAAA+AGG - Chr3:36428988-36429007 MsG0380013379.01.T02:intron 20.0%
!! TAATCAACCATTATCATATT+GGG - Chr3:36430234-36430253 MsG0380013379.01.T01:intron 20.0%
!! TACATGGAATTAAAAAATGA+TGG + Chr3:36428540-36428559 None:intergenic 20.0%
!! TCTAACTATTTAATTGGTAT+CGG - Chr3:36430861-36430880 MsG0380013379.01.T01:intron 20.0%
!! TCTAACTATTTAATTGGTAT+CGG + Chr3:36430880-36430861 None:intergenic 20.0%
!! TCTATCTAAAAAACTATCAA+AGG + Chr3:36429310-36429329 None:intergenic 20.0%
!! TGAAACTATTCAACTAAAAT+GGG + Chr3:36429853-36429872 None:intergenic 20.0%
!! TGTTTATAAAGATACCATAT+TGG - Chr3:36430114-36430133 MsG0380013379.01.T01:intron 20.0%
!! TTAGCCAAATAAATAAATAC+CGG - Chr3:36431899-36431918 MsG0380013379.01.T01:intron 20.0%
!! TTTGTTTATAATATCAGAGA+TGG - Chr3:36432026-36432045 MsG0380013379.01.T01:intron 20.0%
!!! AATCTTAAATCCCTAATTTT+CGG - Chr3:36431154-36431173 MsG0380013379.01.T01:intron 20.0%
!!! ATCAATATTCCTTTTTCATT+TGG + Chr3:36431511-36431530 None:intergenic 20.0%
!!! ATCAATTGCTTTATTTTCAA+TGG - Chr3:36427852-36427871 MsG0380013379.01.T02:intron 20.0%
!!! ATTAAATGATTGCTTGTTAT+AGG - Chr3:36428322-36428341 MsG0380013379.01.T02:intron 20.0%
!!! CTTTTTACGTTATATTTGTT+AGG - Chr3:36432201-36432220 MsG0380013379.01.T01:CDS 20.0%
!!! GAATCTTTATTCCTAATTTT+CGG - Chr3:36431262-36431281 MsG0380013379.01.T01:intron 20.0%
!!! TGGTAAGATTTTATCAAAAA+TGG + Chr3:36428232-36428251 None:intergenic 20.0%
!!! TTCTTATTGGTTAAAAACAA+TGG - Chr3:36429652-36429671 MsG0380013379.01.T01:three_prime_UTR 20.0%
!!! TTTGTTTTTGGTTATTTTTC+TGG - Chr3:36431659-36431678 MsG0380013379.01.T01:intron 20.0%
!!! TTTTCCGGTATTTATTTATT+TGG + Chr3:36431906-36431925 None:intergenic 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + Chr3:36428855-36428874 None:intergenic 20.0%
! AAACTAAGTGATTATTGTAG+AGG - Chr3:36432053-36432072 MsG0380013379.01.T01:intron 25.0%
! AAACTATCAAAGGTTTATAG+TGG + Chr3:36429300-36429319 None:intergenic 25.0%
! AACTAAGTGATTATTGTAGA+GGG - Chr3:36432054-36432073 MsG0380013379.01.T01:intron 25.0%
! AATAGCATAATAAGTCTAAG+TGG + Chr3:36430415-36430434 None:intergenic 25.0%
! AATCAACCATTATCATATTG+GGG - Chr3:36430235-36430254 MsG0380013379.01.T01:intron 25.0%
! ATATAACGTAAAAAGTAGTG+GGG + Chr3:36432196-36432215 None:intergenic 25.0%
! ATGAAAATTTCTCTCTTCTT+TGG - Chr3:36427382-36427401 MsG0380013379.01.T02:intron 25.0%
! ATGAGAATGAAATTTCCATT+TGG - Chr3:36432381-36432400 MsG0380013379.01.T01:CDS 25.0%
! ATGGAATTAAAAAATGATGG+TGG + Chr3:36428537-36428556 None:intergenic 25.0%
! ATTAATTTCATCCCTTGAAA+AGG + Chr3:36427408-36427427 None:intergenic 25.0%
! GAAACTATTCAACTAAAATG+GGG + Chr3:36429852-36429871 None:intergenic 25.0%
! GATACCAATTAAATAGTTAG+AGG - Chr3:36431862-36431881 MsG0380013379.01.T01:intron 25.0%
! GATACCAATTAAATAGTTAG+AGG + Chr3:36431881-36431862 None:intergenic 25.0%
! GATTGAAGGAAAAAACAATA+CGG - Chr3:36431182-36431201 MsG0380013379.01.T01:intron 25.0%
! GTAATCAACCATTATCATAT+TGG - Chr3:36430233-36430252 MsG0380013379.01.T01:intron 25.0%
! GTCAAAATATCAATACTCAA+AGG + Chr3:36429589-36429608 None:intergenic 25.0%
! GTTAATACAGTTCAAATATG+TGG + Chr3:36427726-36427745 None:intergenic 25.0%
! TAAAAGATTCCACATATGTA+GGG + Chr3:36429898-36429917 None:intergenic 25.0%
! TAAAGATTATTGTGACTTGA+GGG + Chr3:36429226-36429245 None:intergenic 25.0%
! TACATGTGTTCATAAAACAT+TGG - Chr3:36430622-36430641 MsG0380013379.01.T01:intron 25.0%
! TTAAAGATTATTGTGACTTG+AGG + Chr3:36429227-36429246 None:intergenic 25.0%
! TTTCTATCATCAAAATTCCT+AGG + Chr3:36430160-36430179 None:intergenic 25.0%
!! AATAGGCTAAATTACCTTTT+TGG - Chr3:36430835-36430854 MsG0380013379.01.T01:intron 25.0%
!! ACTAATTTAGAATTGAGAAG+AGG - Chr3:36431565-36431584 MsG0380013379.01.T01:intron 25.0%
!! ACTTTCTTTTCTTAAGATAG+AGG + Chr3:36428581-36428600 None:intergenic 25.0%
!! ATTTGGCTAAATTACCTTTT+TGG + Chr3:36431889-36431908 None:intergenic 25.0%
!! ATTTTCAGTAGGTATCTTTA+CGG - Chr3:36430321-36430340 MsG0380013379.01.T01:intron 25.0%
!! GAAAATTAGGGATTTAAGAT+TGG + Chr3:36431155-36431174 None:intergenic 25.0%
!! TACATATGTGGAATCTTTTA+GGG - Chr3:36429898-36429917 MsG0380013379.01.T01:exon 25.0%
!! TTTAATGGATGAACATAGTT+AGG + Chr3:36430524-36430543 None:intergenic 25.0%
!! TTTCTCACATGTTACAATTT+TGG - Chr3:36427892-36427911 MsG0380013379.01.T02:CDS 25.0%
!! TTTTAATAAAACTGACGGAA+AGG + Chr3:36430955-36430974 None:intergenic 25.0%
!! TTTTTGAATCAACTCAAAGA+CGG - Chr3:36432142-36432161 MsG0380013379.01.T01:CDS 25.0%
!!! AAAGAATGTTCTAAGAACAT+TGG + Chr3:36428270-36428289 None:intergenic 25.0%
!!! AATGGATTTCGATTTTGAAA+GGG - Chr3:36431231-36431250 MsG0380013379.01.T01:intron 25.0%
!!! AGGAATTTTGATGATAGAAA+TGG - Chr3:36430160-36430179 MsG0380013379.01.T01:intron 25.0%
!!! ATTTTTGATTTTGTCAACTG+AGG + Chr3:36430560-36430579 None:intergenic 25.0%
!!! GTTTCTTGTTTTCGAAATTT+GGG - Chr3:36431318-36431337 MsG0380013379.01.T01:intron 25.0%
!!! TAGAAATGGACTGAAAATTA+TGG - Chr3:36430174-36430193 MsG0380013379.01.T01:intron 25.0%
!!! TATACAGTTTTTGGAATAGT+GGG - Chr3:36431296-36431315 MsG0380013379.01.T01:intron 25.0%
!!! TTATACAGTTTTTGGAATAG+TGG - Chr3:36431295-36431314 MsG0380013379.01.T01:intron 25.0%
!!! TTATTGGTTTGATCCTTTTT+CGG + Chr3:36430079-36430098 None:intergenic 25.0%
!!! TTGTTTTTCTCACTTCTTAT+TGG - Chr3:36429639-36429658 MsG0380013379.01.T01:three_prime_UTR 25.0%
!!! TTTTCAAGGGATGAAATTAA+TGG - Chr3:36427407-36427426 MsG0380013379.01.T02:intron 25.0%
!!! TTTTGTTTTTATGCAGCAAA+TGG - Chr3:36431400-36431419 MsG0380013379.01.T01:intron 25.0%
AAAACAATGGAGAGAGAAAA+AGG + Chr3:36429684-36429665 None:intergenic 30.0%
AAATAGTTAGAGGACCAAAA+AGG - Chr3:36431872-36431891 MsG0380013379.01.T01:intron 30.0%
AAATAGTTAGAGGACCAAAA+AGG + Chr3:36431891-36431872 None:intergenic 30.0%
AAGAGTAAGCCAAATGAAAA+AGG - Chr3:36431499-36431518 MsG0380013379.01.T01:CDS 30.0%
ACTAAGTGATTATTGTAGAG+GGG - Chr3:36432055-36432074 MsG0380013379.01.T01:intron 30.0%
AGAAAATTTACCTTGCTAGA+AGG + Chr3:36428006-36428025 None:intergenic 30.0%
AGAAATTATCAATGTGTTGG+TGG + Chr3:36430481-36430500 None:intergenic 30.0%
ATAACTCCCCAATATGATAA+TGG + Chr3:36430244-36430263 None:intergenic 30.0%
ATTTCTTAGCCTATAATTCC+GGG + Chr3:36428148-36428167 None:intergenic 30.0%
ATTTGAAAAAGTGAAGAAGG+AGG + Chr3:36427185-36427204 None:intergenic 30.0%
ATTTGAGTATCAACCAGATA+AGG - Chr3:36428105-36428124 MsG0380013379.01.T02:intron 30.0%
CAATCGAAATCCGAAAATTA+GGG + Chr3:36431167-36431186 None:intergenic 30.0%
CAATTCATAACAGAATCAAC+AGG + Chr3:36427474-36427493 None:intergenic 30.0%
CCCTAAAAAAAATGACCAAA+GGG + Chr3:36427568-36427587 None:intergenic 30.0%
CTAAAAGAAAGATATTGCCT+AGG - Chr3:36430140-36430159 MsG0380013379.01.T01:intron 30.0%
CTAAAAGATTCCACATATGT+AGG + Chr3:36429899-36429918 None:intergenic 30.0%
CTTAATATGGCAAACAAAGT+GGG - Chr3:36427353-36427372 MsG0380013379.01.T02:intron 30.0%
GAAAATTTACCTTGCTAGAA+GGG + Chr3:36428005-36428024 None:intergenic 30.0%
GACAGAAATTATCAATGTGT+TGG + Chr3:36430484-36430503 None:intergenic 30.0%
GATGGCTAATGAATATAACA+AGG - Chr3:36427667-36427686 MsG0380013379.01.T02:intron 30.0%
GATTTCTTAGCCTATAATTC+CGG + Chr3:36428149-36428168 None:intergenic 30.0%
TAATACTAAAAATGACGGTG+AGG - Chr3:36429949-36429968 MsG0380013379.01.T01:CDS 30.0%
TATACAGTCCAACAATTTCA+AGG + Chr3:36431932-36431951 None:intergenic 30.0%
TCAACAAAGTTGTCATCAAA+TGG + Chr3:36429614-36429633 None:intergenic 30.0%
TCAATCGAAATCCGAAAATT+AGG + Chr3:36431168-36431187 None:intergenic 30.0%
TCCCTAAAAAAAATGACCAA+AGG + Chr3:36427569-36427588 None:intergenic 30.0%
TCTTAATATGGCAAACAAAG+TGG - Chr3:36427352-36427371 MsG0380013379.01.T02:intron 30.0%
TGACTCTAATATTGATCCAA+CGG - Chr3:36429274-36429293 MsG0380013379.01.T02:intron 30.0%
TGGATAACAACAAATCAGAA+GGG - Chr3:36432083-36432102 MsG0380013379.01.T01:intron 30.0%
TGGTCCTCTAACTATTTAAT+TGG - Chr3:36430855-36430874 MsG0380013379.01.T01:intron 30.0%
TGGTCCTCTAACTATTTAAT+TGG + Chr3:36430874-36430855 None:intergenic 30.0%
TTGAGAAGAGGAAAAGATTA+TGG - Chr3:36431577-36431596 MsG0380013379.01.T01:intron 30.0%
TTGGATAACAACAAATCAGA+AGG - Chr3:36432082-36432101 MsG0380013379.01.T01:intron 30.0%
TTTGAATAAATCTGACGGAA+AGG - Chr3:36431770-36431789 MsG0380013379.01.T01:intron 30.0%
! AATTTTCGGATTTCGATTGA+AGG - Chr3:36431168-36431187 MsG0380013379.01.T01:intron 30.0%
! AATTTTTGCAGCTAACAGTA+TGG + Chr3:36427830-36427849 None:intergenic 30.0%
! ACATATGTGGAATCTTTTAG+GGG - Chr3:36429899-36429918 MsG0380013379.01.T01:exon 30.0%
! ATTCCTAATTTTCGGTTTCT+GGG - Chr3:36431270-36431289 MsG0380013379.01.T01:intron 30.0%
! CTACATATGTGGAATCTTTT+AGG - Chr3:36429897-36429916 MsG0380013379.01.T01:exon 30.0%
! CTCATTTCCTTTTGTATGAT+TGG - Chr3:36429772-36429791 MsG0380013379.01.T01:three_prime_UTR 30.0%
! CTTTCTTTTAGTCACCAATA+TGG + Chr3:36430131-36430150 None:intergenic 30.0%
! GAATATTGATGGGTATGATA+GGG - Chr3:36431521-36431540 MsG0380013379.01.T01:CDS 30.0%
! GACTTATTATGCTATTTGAG+TGG - Chr3:36430419-36430438 MsG0380013379.01.T01:intron 30.0%
! TATTCCTAATTTTCGGTTTC+TGG - Chr3:36431269-36431288 MsG0380013379.01.T01:intron 30.0%
! TCTCTTTGCTCTCTTTTTAT+TGG + Chr3:36428868-36428887 None:intergenic 30.0%
! TCTGACATTTGTGTTATTAG+AGG + Chr3:36428607-36428626 None:intergenic 30.0%
! TGAATGTTGAAACGATCTTT+TGG - Chr3:36431450-36431469 MsG0380013379.01.T01:intron 30.0%
! TGTTTAAATGATTTGCATCC+TGG - Chr3:36428450-36428469 MsG0380013379.01.T02:intron 30.0%
! TTAATTTGAATGACCAGATC+AGG - Chr3:36430293-36430312 MsG0380013379.01.T01:intron 30.0%
! TTTATCGGTTGAATCACTAT+AGG - Chr3:36429419-36429438 MsG0380013379.01.T02:intron 30.0%
! TTTGGGATTGTTACAAGTTA+TGG - Chr3:36431335-36431354 MsG0380013379.01.T01:intron 30.0%
!! ACATGTTACAATTTTGGTGT+TGG - Chr3:36427898-36427917 MsG0380013379.01.T02:CDS 30.0%
!! ATGAAATTAATGGTTGGTGA+TGG - Chr3:36427417-36427436 MsG0380013379.01.T02:intron 30.0%
!! ATGGTGGAATGAATGATTTT+AGG - Chr3:36431596-36431615 MsG0380013379.01.T01:intron 30.0%
!! ATGTGTGAGTGATTACTTTT+GGG - Chr3:36427235-36427254 MsG0380013379.01.T02:CDS 30.0%
!! CAATGGATTTCGATTTTGAA+AGG - Chr3:36431230-36431249 MsG0380013379.01.T01:intron 30.0%
!! CTATTTAATTGGTATCGGTT+TGG - Chr3:36430866-36430885 MsG0380013379.01.T01:intron 30.0%
!! CTATTTAATTGGTATCGGTT+TGG + Chr3:36430885-36430866 None:intergenic 30.0%
!! CTGTTGATTCTGTTATGAAT+TGG - Chr3:36427472-36427491 MsG0380013379.01.T02:intron 30.0%
!! TAAAAAATGATGGTGGAGAA+AGG + Chr3:36428530-36428549 None:intergenic 30.0%
!! TAGGTTTGAGTTGATAATGA+TGG - Chr3:36431615-36431634 MsG0380013379.01.T01:intron 30.0%
!! TCTGGGTTTTATACAGTTTT+TGG - Chr3:36431287-36431306 MsG0380013379.01.T01:intron 30.0%
!!! AACCACTTTTTGACAACTTT+TGG + Chr3:36429737-36429756 None:intergenic 30.0%
!!! ACCCTTTGGTCATTTTTTTT+AGG - Chr3:36427564-36427583 MsG0380013379.01.T02:intron 30.0%
!!! CCCTTTGGTCATTTTTTTTA+GGG - Chr3:36427565-36427584 MsG0380013379.01.T02:intron 30.0%
!!! GGTCATTTTTTTTAGGGAAA+TGG - Chr3:36427571-36427590 MsG0380013379.01.T02:intron 30.0%
!!! GGTTTCTTGTTTTCGAAATT+TGG - Chr3:36431317-36431336 MsG0380013379.01.T01:intron 30.0%
!!! TCCTTCTTCACTTTTTCAAA+TGG - Chr3:36427184-36427203 MsG0380013379.01.T02:CDS 30.0%
!!! TGTTTTGAAAACTCCATACT+TGG - Chr3:36430656-36430675 MsG0380013379.01.T01:intron 30.0%
AAACCCAGAAACCGAAAATT+AGG + Chr3:36431276-36431295 None:intergenic 35.0%
AGAAGAGGAAAAGATTATGG+TGG - Chr3:36431580-36431599 MsG0380013379.01.T01:intron 35.0%
AGACACATGAAGAAGAAATG+GGG - Chr3:36427260-36427279 MsG0380013379.01.T02:intron 35.0%
AGAGACACATGAAGAAGAAA+TGG - Chr3:36427258-36427277 MsG0380013379.01.T02:CDS 35.0%
AGATAGCACGTGACAAAATT+GGG - Chr3:36428716-36428735 MsG0380013379.01.T02:intron 35.0%
AGCAAAGAGACGAAAAAACA+AGG - Chr3:36428878-36428897 MsG0380013379.01.T02:intron 35.0%
AGCATTGTGTAAACAGAGTA+AGG + Chr3:36429135-36429154 None:intergenic 35.0%
AGTCAAGATTCCATGTTACA+CGG + Chr3:36428665-36428684 None:intergenic 35.0%
ATGACATACTGTCCATGAAA+TGG + Chr3:36430453-36430472 None:intergenic 35.0%
ATGTTTATGCCAACCAAGTA+TGG + Chr3:36430672-36430691 None:intergenic 35.0%
CAAGGGATGAAATTAATGGT+TGG - Chr3:36427411-36427430 MsG0380013379.01.T02:intron 35.0%
CACACATAAATAAGAAGTCG+AGG - Chr3:36429356-36429375 MsG0380013379.01.T02:intron 35.0%
CTAAGTGATTATTGTAGAGG+GGG - Chr3:36432056-36432075 MsG0380013379.01.T01:intron 35.0%
GAAAAGGTCCTTGAAATTGT+TGG - Chr3:36431921-36431940 MsG0380013379.01.T01:intron 35.0%
GAAATGATAGCTGCAATCAT+AGG - Chr3:36427439-36427458 MsG0380013379.01.T02:intron 35.0%
GACAAAAGTAGCCATTCATA+AGG + Chr3:36429469-36429488 None:intergenic 35.0%
GAGACACATGAAGAAGAAAT+GGG - Chr3:36427259-36427278 MsG0380013379.01.T02:CDS 35.0%
GATCAATAGGAAAGACCATA+GGG - Chr3:36432307-36432326 MsG0380013379.01.T01:CDS 35.0%
GCCATTTGAAAAAGTGAAGA+AGG + Chr3:36427188-36427207 None:intergenic 35.0%
GGTTAACGCAATTTAGTAGA+TGG - Chr3:36427649-36427668 MsG0380013379.01.T02:intron 35.0%
GTCACAAAGTTGTCATCAAA+TGG - Chr3:36428904-36428923 MsG0380013379.01.T02:intron 35.0%
GTCCAAAAGTTGTCAAAAAG+TGG - Chr3:36429732-36429751 MsG0380013379.01.T01:three_prime_UTR 35.0%
TAAGTGATTATTGTAGAGGG+GGG - Chr3:36432057-36432076 MsG0380013379.01.T01:intron 35.0%
TATTGGTCAAGCTGCTTATA+GGG - Chr3:36427289-36427308 MsG0380013379.01.T02:intron 35.0%
TCAGAGATATGAAGATCATG+TGG + Chr3:36428429-36428448 None:intergenic 35.0%
TCTAACATAGGATCCGAAAA+AGG - Chr3:36430063-36430082 MsG0380013379.01.T01:intron 35.0%
TGAGGAGAAGTTATCATTGT+TGG - Chr3:36427118-36427137 MsG0380013379.01.T02:CDS 35.0%
TGATCATGTTGAAGAGATTG+AGG - Chr3:36427100-36427119 MsG0380013379.01.T02:CDS 35.0%
TGGAAAGGTTTGGAAGAAAA+TGG - Chr3:36431476-36431495 MsG0380013379.01.T01:intron 35.0%
TGGTTAACAAGATCCTTATC+TGG + Chr3:36428121-36428140 None:intergenic 35.0%
TGTTATAGGTATCCTTCACA+TGG - Chr3:36428336-36428355 MsG0380013379.01.T02:intron 35.0%
TTATTGGTCAAGCTGCTTAT+AGG - Chr3:36427288-36427307 MsG0380013379.01.T02:intron 35.0%
TTGAAAACTCCATACTTGGT+TGG - Chr3:36430660-36430679 MsG0380013379.01.T01:intron 35.0%
! ACAATTTCAAGGACCTTTTC+CGG + Chr3:36431921-36431940 None:intergenic 35.0%
! ATCAGGTCACAATTTTCAGT+AGG - Chr3:36430310-36430329 MsG0380013379.01.T01:intron 35.0%
! ATGGCATGTTGCTTCAAAAA+AGG - Chr3:36427319-36427338 MsG0380013379.01.T02:intron 35.0%
! GATGTGTGAGTGATTACTTT+TGG - Chr3:36427234-36427253 MsG0380013379.01.T02:CDS 35.0%
! GGAATATTGATGGGTATGAT+AGG - Chr3:36431520-36431539 MsG0380013379.01.T01:CDS 35.0%
! TGGCATGTTGCTTCAAAAAA+GGG - Chr3:36427320-36427339 MsG0380013379.01.T02:intron 35.0%
!! ATTTTTGTTGACTGCAGACT+CGG - Chr3:36432232-36432251 MsG0380013379.01.T01:CDS 35.0%
!! GTTTGAGTTGATAATGATGG+AGG - Chr3:36431618-36431637 MsG0380013379.01.T01:intron 35.0%
!! TGCTTAAGTGTGTCATTTCA+TGG - Chr3:36428045-36428064 MsG0380013379.01.T02:intron 35.0%
!! TGGTATCTTGCTATTGAAAC+TGG - Chr3:36427492-36427511 MsG0380013379.01.T02:intron 35.0%
!! TTGCTTCAAAAAAGGGTGTT+GGG - Chr3:36427327-36427346 MsG0380013379.01.T02:intron 35.0%
!! TTTTTCGGATCCTATGTTAG+AGG + Chr3:36430064-36430083 None:intergenic 35.0%
!!! AATGAGGCTGATGGATTTTA+TGG - Chr3:36432338-36432357 MsG0380013379.01.T01:CDS 35.0%
!!! ATGAGGCTGATGGATTTTAT+GGG - Chr3:36432339-36432358 MsG0380013379.01.T01:CDS 35.0%
!!! GTCTTACTTGTTTTACAGGA+AGG - Chr3:36429080-36429099 MsG0380013379.01.T02:intron 35.0%
!!! TACAATTTTGGTGTTGGTGT+TGG - Chr3:36427904-36427923 MsG0380013379.01.T02:CDS 35.0%
!!! TCTTCACTTTTTCAAATGGC+TGG - Chr3:36427188-36427207 MsG0380013379.01.T02:CDS 35.0%
!!! TTGAAACGATCTTTTGGAGT+TGG - Chr3:36431456-36431475 MsG0380013379.01.T01:intron 35.0%
AACCAATGTCCCGGAATTAT+AGG - Chr3:36428136-36428155 MsG0380013379.01.T02:intron 40.0%
AAGAAATGGGGTGGAGTTAT+TGG - Chr3:36427272-36427291 MsG0380013379.01.T02:intron 40.0%
AAGACTGCGTTCAATACACA+AGG + Chr3:36429065-36429084 None:intergenic 40.0%
AAGATTCCACATATGTAGGG+AGG + Chr3:36429895-36429914 None:intergenic 40.0%
ACTCACCACTATTATGACAG+CGG + Chr3:36429550-36429569 None:intergenic 40.0%
AGATTCCACATATGTAGGGA+GGG + Chr3:36429894-36429913 None:intergenic 40.0%
AGGTATCTATGGAAACCCTT+TGG - Chr3:36427550-36427569 MsG0380013379.01.T02:intron 40.0%
AGTAACGGTGACAAAGTTAG+AGG - Chr3:36431802-36431821 MsG0380013379.01.T01:intron 40.0%
AGTAACGGTGACAAAGTTAG+AGG + Chr3:36431821-36431802 None:intergenic 40.0%
ATCACATAGAGATTCAGTGG+AGG - Chr3:36428475-36428494 MsG0380013379.01.T02:intron 40.0%
ATGCATTCCAAAGTTAGCTC+TGG + Chr3:36427149-36427168 None:intergenic 40.0%
ATTCCATGTTACACGGATCT+GGG + Chr3:36428658-36428677 None:intergenic 40.0%
CAGATAGCACGTGACAAAAT+TGG - Chr3:36428715-36428734 MsG0380013379.01.T02:intron 40.0%
CAGCATCATAGCAAGATAAC+AGG + Chr3:36427955-36427974 None:intergenic 40.0%
CGTTCAATACACCAAATGGT+GGG + Chr3:36429109-36429128 None:intergenic 40.0%
CTGAAAATTGTGACCTGATC+TGG + Chr3:36430309-36430328 None:intergenic 40.0%
CTGCTTATAGGGAATGGAAA+TGG - Chr3:36427300-36427319 MsG0380013379.01.T02:intron 40.0%
GAAAGGACGAAAAGCAGTAA+CGG - Chr3:36431787-36431806 MsG0380013379.01.T01:intron 40.0%
GAAAGGACGAAAAGCAGTAA+CGG + Chr3:36431806-36431787 None:intergenic 40.0%
GATAGCACGTGACAAAATTG+GGG - Chr3:36428717-36428736 MsG0380013379.01.T02:intron 40.0%
GATCTTGTTAACCAATGTCC+CGG - Chr3:36428127-36428146 MsG0380013379.01.T02:intron 40.0%
GCAATCACATAGAGATTCAG+TGG - Chr3:36428472-36428491 MsG0380013379.01.T02:intron 40.0%
GGAGAAAGGAACAAACCATA+AGG + Chr3:36428516-36428535 None:intergenic 40.0%
GGATCAATAGGAAAGACCAT+AGG - Chr3:36432306-36432325 MsG0380013379.01.T01:CDS 40.0%
GTATGATAGGGAAATTGCAG+TGG - Chr3:36431533-36431552 MsG0380013379.01.T01:CDS 40.0%
GTGTTGTAGAATGGTCATCT+TGG - Chr3:36427926-36427945 MsG0380013379.01.T02:CDS 40.0%
GTTGTTGTCCTGTGATTGAA+AGG + Chr3:36429181-36429200 None:intergenic 40.0%
TCATGTGGAGAGATATCAAC+AGG + Chr3:36428414-36428433 None:intergenic 40.0%
TGAATCTCTATGTGATTGCC+AGG + Chr3:36428471-36428490 None:intergenic 40.0%
TGGTGTTTGCCATTCATTGA+GGG - Chr3:36427208-36427227 MsG0380013379.01.T02:CDS 40.0%
TTTCCATTTGGAAACGCATG+TGG - Chr3:36432393-36432412 MsG0380013379.01.T01:CDS 40.0%
! ACGGAGTTATTTAGTGCTGA+TGG - Chr3:36432161-36432180 MsG0380013379.01.T01:CDS 40.0%
! CAATTTTGTCACGTGCTATC+TGG + Chr3:36428717-36428736 None:intergenic 40.0%
! CTATAACCGTGAGGTATCTA+TGG - Chr3:36427539-36427558 MsG0380013379.01.T02:intron 40.0%
! GTTGCTTCAAAAAAGGGTGT+TGG - Chr3:36427326-36427345 MsG0380013379.01.T02:intron 40.0%
! TAGAGAGTGTGGAATTCCAT+GGG - Chr3:36428371-36428390 MsG0380013379.01.T02:intron 40.0%
! TTACCTTGCTAGAAGGGTAT+TGG + Chr3:36427999-36428018 None:intergenic 40.0%
!! ATGGCAAACAAAGTGGGTTA+TGG - Chr3:36427359-36427378 MsG0380013379.01.T02:intron 40.0%
!! CGGAGTTATTTAGTGCTGAT+GGG - Chr3:36432162-36432181 MsG0380013379.01.T01:CDS 40.0%
!! CTCTTCTTTGGCCTTTTCAA+GGG - Chr3:36427394-36427413 MsG0380013379.01.T02:intron 40.0%
!! GAGTTATTTAGTGCTGATGG+GGG - Chr3:36432164-36432183 MsG0380013379.01.T01:CDS 40.0%
!! GGAGTTATTTAGTGCTGATG+GGG - Chr3:36432163-36432182 MsG0380013379.01.T01:CDS 40.0%
!! GTTTACACAATGCTGTTTCC+AGG - Chr3:36429141-36429160 MsG0380013379.01.T02:intron 40.0%
!! TCTCTTCTTTGGCCTTTTCA+AGG - Chr3:36427393-36427412 MsG0380013379.01.T02:intron 40.0%
!! TTGGTGTTGGTGTTGTAGAA+TGG - Chr3:36427917-36427936 MsG0380013379.01.T02:CDS 40.0%
!!! ACGATCTTTTGGAGTTGGAA+AGG - Chr3:36431461-36431480 MsG0380013379.01.T01:intron 40.0%
!!! CGCAGTCTTACTTGTTTTAC+AGG - Chr3:36429076-36429095 MsG0380013379.01.T02:intron 40.0%
!!! CTTTTGGAGTTGGAAAGGTT+TGG - Chr3:36431466-36431485 MsG0380013379.01.T01:intron 40.0%
!!! TGAGGCTGATGGATTTTATG+GGG - Chr3:36432340-36432359 MsG0380013379.01.T01:CDS 40.0%
ACTGCGTTCAATACACAAGG+TGG + Chr3:36429062-36429081 None:intergenic 45.0%
AGAAGAGAAGCTAGAGAGTG+TGG - Chr3:36428360-36428379 MsG0380013379.01.T02:intron 45.0%
AGCCTATAATTCCGGGACAT+TGG + Chr3:36428141-36428160 None:intergenic 45.0%
AGGAAAGACCATAGGGAAGA+AGG - Chr3:36432314-36432333 MsG0380013379.01.T01:CDS 45.0%
AGTGTGGAATTCCATGGGAA+AGG - Chr3:36428376-36428395 MsG0380013379.01.T02:intron 45.0%
ATTACACTCCTGGCTCAAGA+TGG - Chr3:36432273-36432292 MsG0380013379.01.T01:CDS 45.0%
CAAAGGTTTATAGTGGCCGT+TGG + Chr3:36429293-36429312 None:intergenic 45.0%
CAACTTTACCAGTTGCGCTA+AGG - Chr3:36429197-36429216 MsG0380013379.01.T02:intron 45.0%
CAATACCCTCCCTACATATG+TGG - Chr3:36429886-36429905 MsG0380013379.01.T01:exon 45.0%
CACATCTCTCCCTCAATGAA+TGG + Chr3:36427220-36427239 None:intergenic 45.0%
CACATGAAGAAGAAATGGGG+TGG - Chr3:36427263-36427282 MsG0380013379.01.T02:intron 45.0%
CACTGAAGCTCCTCTAACAT+AGG - Chr3:36430051-36430070 MsG0380013379.01.T01:intron 45.0%
CATTGCCGCTGTCATAATAG+TGG - Chr3:36429542-36429561 MsG0380013379.01.T01:three_prime_UTR 45.0%
CCATAGGGAAGAAGGAAATG+AGG - Chr3:36432322-36432341 MsG0380013379.01.T01:CDS 45.0%
CCTCATTTCCTTCTTCCCTA+TGG + Chr3:36432325-36432344 None:intergenic 45.0%
CTATTGAAACTGGCAGCTTC+TGG - Chr3:36427502-36427521 MsG0380013379.01.T02:intron 45.0%
CTGCGTTCAATACACAAGGT+GGG + Chr3:36429061-36429080 None:intergenic 45.0%
CTGGTGTTTGCCATTCATTG+AGG - Chr3:36427207-36427226 MsG0380013379.01.T02:CDS 45.0%
GAACCAATACCCTTCTAGCA+AGG - Chr3:36427993-36428012 MsG0380013379.01.T02:intron 45.0%
GAAGAAGGAAATGAGGCTGA+TGG - Chr3:36432329-36432348 MsG0380013379.01.T01:CDS 45.0%
GAGTTCAACCATTACACTCC+TGG - Chr3:36432263-36432282 MsG0380013379.01.T01:CDS 45.0%
GATTCCATGTTACACGGATC+TGG + Chr3:36428659-36428678 None:intergenic 45.0%
GCGTTCAATACACCAAATGG+TGG + Chr3:36429110-36429129 None:intergenic 45.0%
GCTGCGTTCAATACACCAAA+TGG + Chr3:36429113-36429132 None:intergenic 45.0%
GCTTCTCTTCTTCCATGTGA+AGG + Chr3:36428351-36428370 None:intergenic 45.0%
GGAGACAGACTAGGATCAAT+AGG - Chr3:36432294-36432313 MsG0380013379.01.T01:CDS 45.0%
GGGTTTCCATAGATACCTCA+CGG + Chr3:36427548-36427567 None:intergenic 45.0%
GTCAAGCTGCTTATAGGGAA+TGG - Chr3:36427294-36427313 MsG0380013379.01.T02:intron 45.0%
GTCCTGTGATTGAAAGGTCA+CGG + Chr3:36429175-36429194 None:intergenic 45.0%
TCACGGTTATAGACTTGAGC+AGG + Chr3:36427531-36427550 None:intergenic 45.0%
TCCTGTGATTGAAAGGTCAC+GGG + Chr3:36429174-36429193 None:intergenic 45.0%
TGCTCAAGTCTATAACCGTG+AGG - Chr3:36427530-36427549 MsG0380013379.01.T02:intron 45.0%
TGTGGAGAGATATCAACAGG+AGG + Chr3:36428411-36428430 None:intergenic 45.0%
TTCCATGTTACACGGATCTG+GGG + Chr3:36428657-36428676 None:intergenic 45.0%
TTGCAGCTAACAGTATGGTG+TGG + Chr3:36427825-36427844 None:intergenic 45.0%
! ATCTTGAGCCAGGAGTGTAA+TGG + Chr3:36432274-36432293 None:intergenic 45.0%
! ATTATTGTAGAGGGGGGCAT+TGG - Chr3:36432063-36432082 MsG0380013379.01.T01:intron 45.0%
! CTAGAGAGTGTGGAATTCCA+TGG - Chr3:36428370-36428389 MsG0380013379.01.T02:intron 45.0%
! GAAAGCACGACAGCAATTGA+AGG - Chr3:36431124-36431143 MsG0380013379.01.T01:CDS 45.0%
! GTGGTCTTGAAGCCATTTCA+TGG - Chr3:36430438-36430457 MsG0380013379.01.T01:intron 45.0%
! TTTTGTCACGTGCTATCTGG+AGG + Chr3:36428714-36428733 None:intergenic 45.0%
!! GGGTGTTGGGAGTCTTAATA+TGG - Chr3:36427340-36427359 MsG0380013379.01.T02:intron 45.0%
!! TATGTAGGGAGGGTATTGCA+CGG + Chr3:36429884-36429903 None:intergenic 45.0%
!!! GAGGCTGATGGATTTTATGG+GGG - Chr3:36432341-36432360 MsG0380013379.01.T01:CDS 45.0%
!!! TGAATGGCTACTTTTGTCGC+AGG - Chr3:36429471-36429490 MsG0380013379.01.T02:intron 45.0%
!! ATAGTTTATATAAATATTAT+TGG + Chr3:36430095-36430114 None:intergenic 5.0%
!!! ATATTTATAATTTTTTTTAG+TGG + Chr3:36430379-36430398 None:intergenic 5.0%
ACCCGTGACCTTTCAATCAC+AGG - Chr3:36429170-36429189 MsG0380013379.01.T02:intron 50.0%
CAACAGCAACACGACAGCAA+TGG - Chr3:36431213-36431232 MsG0380013379.01.T01:intron 50.0%
CCTTCCTGACACTGCATATC+CGG + Chr3:36429035-36429054 None:intergenic 50.0%
CTTCCTGACACTGCATATCC+GGG + Chr3:36429034-36429053 None:intergenic 50.0%
GCTCAAGATGGAGACAGACT+AGG - Chr3:36432285-36432304 MsG0380013379.01.T01:CDS 50.0%
GGACTTGCCAGAGCTAACTT+TGG - Chr3:36427139-36427158 MsG0380013379.01.T02:CDS 50.0%
TGGCCACATGCGTTTCCAAA+TGG + Chr3:36432399-36432418 None:intergenic 50.0%
TTCCCCAGATCCGTGTAACA+TGG - Chr3:36428652-36428671 MsG0380013379.01.T02:intron 50.0%
! CATGTGGCCATCTGAAGTCT+TGG - Chr3:36432409-36432428 MsG0380013379.01.T01:CDS 50.0%
!! ATGTAGGGAGGGTATTGCAC+GGG + Chr3:36429883-36429902 None:intergenic 50.0%
!! CTACTTTTGTCGCAGGTTGG+TGG - Chr3:36429478-36429497 MsG0380013379.01.T02:intron 50.0%
!! TTTGTCGCAGGTTGGTGGTA+TGG - Chr3:36429483-36429502 MsG0380013379.01.T02:intron 50.0%
!!! TGGCTACTTTTGTCGCAGGT+TGG - Chr3:36429475-36429494 MsG0380013379.01.T02:intron 50.0%
AAGGTCACGGGTTCAAGTCC+TGG + Chr3:36429162-36429181 None:intergenic 55.0%
ACCTGTTGCACTAGAGCTCC+CGG - Chr3:36429013-36429032 MsG0380013379.01.T02:intron 55.0%
CAGGAAGGAGTCCCACCATT+TGG - Chr3:36429095-36429114 MsG0380013379.01.T02:intron 55.0%
CCGGATATGCAGTGTCAGGA+AGG - Chr3:36429032-36429051 MsG0380013379.01.T02:intron 55.0%
GAGGGTAACCTTAGCGCAAC+TGG + Chr3:36429208-36429227 None:intergenic 55.0%
GTCTGTCTCCATCTTGAGCC+AGG + Chr3:36432284-36432303 None:intergenic 55.0%
! GGTGCTCTTAGCCTTTCCCA+TGG + Chr3:36428390-36428409 None:intergenic 55.0%
!! GCAGGTTGGTGGTATGGTGT+GGG - Chr3:36429489-36429508 MsG0380013379.01.T02:intron 55.0%
GCTCCCGGATATGCAGTGTC+AGG - Chr3:36429028-36429047 MsG0380013379.01.T02:intron 60.0%
GGTGGTATGGTGTGGGTCAC+TGG - Chr3:36429496-36429515 MsG0380013379.01.T02:intron 60.0%
! TCCGGGAGCTCTAGTGCAAC+AGG + Chr3:36429017-36429036 None:intergenic 60.0%
!! CGCAGGTTGGTGGTATGGTG+TGG - Chr3:36429488-36429507 MsG0380013379.01.T02:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 36427065 36432436 36427065 ID=MsG0380013379.01;Name=MsG0380013379.01
Chr3 mRNA 36429524 36432436 36429524 ID=MsG0380013379.01.T01;Parent=MsG0380013379.01;Name=MsG0380013379.01.T01;_AED=0.40;_eAED=0.40;_QI=0|0.66|0.75|1|0.66|0.75|4|378|222
Chr3 exon 36429524 36430008 36429524 ID=MsG0380013379.01.T01:exon:8008;Parent=MsG0380013379.01.T01
Chr3 exon 36430982 36431157 36430982 ID=MsG0380013379.01.T01:exon:8007;Parent=MsG0380013379.01.T01
Chr3 exon 36431487 36431566 36431487 ID=MsG0380013379.01.T01:exon:8006;Parent=MsG0380013379.01.T01
Chr3 exon 36432131 36432436 36432131 ID=MsG0380013379.01.T01:exon:8005;Parent=MsG0380013379.01.T01
Chr3 CDS 36432131 36432436 36432131 ID=MsG0380013379.01.T01:cds;Parent=MsG0380013379.01.T01
Chr3 CDS 36431487 36431566 36431487 ID=MsG0380013379.01.T01:cds;Parent=MsG0380013379.01.T01
Chr3 CDS 36430982 36431157 36430982 ID=MsG0380013379.01.T01:cds;Parent=MsG0380013379.01.T01
Chr3 CDS 36429902 36430008 36429902 ID=MsG0380013379.01.T01:cds;Parent=MsG0380013379.01.T01
Chr3 three_prime_UTR 36429524 36429901 36429524 ID=MsG0380013379.01.T01:three_prime_utr;Parent=MsG0380013379.01.T01
Chr3 mRNA 36427065 36429784 36427065 ID=MsG0380013379.01.T02;Parent=MsG0380013379.01;Name=MsG0380013379.01.T02;_AED=0.46;_eAED=0.68;_QI=0|0|0|1|0.5|0.33|3|0|137
Chr3 exon 36429661 36429784 36429661 ID=MsG0380013379.01.T02:exon:8011;Parent=MsG0380013379.01.T02
Chr3 exon 36427884 36427959 36427884 ID=MsG0380013379.01.T02:exon:8010;Parent=MsG0380013379.01.T02
Chr3 exon 36427065 36427278 36427065 ID=MsG0380013379.01.T02:exon:8009;Parent=MsG0380013379.01.T02
Chr3 CDS 36429661 36429784 36429661 ID=MsG0380013379.01.T02:cds;Parent=MsG0380013379.01.T02
Chr3 CDS 36427884 36427959 36427884 ID=MsG0380013379.01.T02:cds;Parent=MsG0380013379.01.T02
Chr3 CDS 36427065 36427278 36427065 ID=MsG0380013379.01.T02:cds;Parent=MsG0380013379.01.T02
Gene Sequence

>MsG0380013379.01.T01

ATGTCTATGGTGAGGAAGAGTCTTAGTTCAAGAGTTGATCATGTTGAAGAGATTGAGGAGAAGTTATCATTGTTGGACTTGCCAGAGCTAACTTTGGAATGCATACTTGAAAAGTTACCTCCTTCTTCACTTTTTCAAATGGCTGGTGTTTGCCATTCATTGAGGGAGAGATGTGTGAGTGATTACTTTTGGGAGAGACACATGAAGAAGAAATGGGGTGGAGTTATTGGTCAAGCTGCTTATAGGGAATGGAAATGGCATGTTGCTTCAAAAAAGGGTGTTGGGAGTCTTAATATGGCAAACAAAAATGGTCATCTTGGTTTCCTGTTATCTTGCTATGATGCTGAACTTAGCTATGATTCGCGAACCAATACCCTTCTAGCAAGGTATCCTTCACATGGAAGAAGAGAAGCTAGAGAGTGTGGAATTCCATGGGAAAGGCTAAGAGCACCTCCTGTTGATATCTCTCCACATGATCTTCATATCTCTGATTGTTTAAATGATTTGCATCCTGGCAATCACATAGAGATTCAGTGGAGGAGAAAAAAAGAATTTCCTTATGGTTGGTGGTATGGTGTGGGTCACTGGAGTCATGTAATGACAATGAAAATCATTGCCGCTGTCATAATAGTGGTGAGTCAATCAATGTCAATTTCCTTTGAGTATTGA

>MsG0380013379.01.T02

ATGAGAGAGAAAGTTGTCCAAAAGTTGTCAAAAAGTGGTTGTCAAAATATCATTTCTCATTTCCTTTTGTATGATTGGTATTTATCAGTCATTACTTTCTTTTTGTTATCGACTTTTAATTCTAGGAAATTGCAGTGGACTGTGATTACTAATTTAGAATTGAGAAGAGGAAAAGATTATGGTGGAATGAATGATTTTAGGTATTTGATATTTTTGTTGACTGCAGACTCGGTGATGCTAGAGTTCAACCATTACACTCCTGGCTCAAGATGGAGACAGACTAGGATCAATAGGAAAGACCATAGGGAAGAAGGAAATGAGGCTGATGGATTTTATGGGGGAATAAGAAAGATTGAGAATGAGAATGAAATTTCCATTTGGAAACGCATGTGGCCATCTGAAGTCTTGGATTAG
Protein sequence

>MsG0380013379.01.T01

MSMVRKSLSSRVDHVEEIEEKLSLLDLPELTLECILEKLPPSSLFQMAGVCHSLRERCVSDYFWERHMKKKWGGVIGQAAYREWKWHVASKKGVGSLNMANKNGHLGFLLSCYDAELSYDSRTNTLLARYPSHGRREARECGIPWERLRAPPVDISPHDLHISDCLNDLHPGNHIEIQWRRKKEFPYGWWYGVGHWSHVMTMKIIAAVIIVVSQSMSISFEY*

>MsG0380013379.01.T02

MREKVVQKLSKSGCQNIISHFLLYDWYLSVITFFLLSTFNSRKLQWTVITNLELRRGKDYGGMNDFRYLIFLLTADSVMLEFNHYTPGSRWRQTRINRKDHREEGNEADGFYGGIRKIENENEISIWKRMWPSEVLD*