AlfalfaGEDB | MsG0380017229.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017229.01

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017229.01.T01	XP_013461801.1	96.222	397	15	0	1	397	1	397	0	781

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017229.01.T01	Q9SY57	51.531	392	179	4	7	390	13	401	2.43E-136	399

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017229.01.T01	A0A072V2F7	96.222	397	15	0	1	397	1	397	0.0	781

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047790.01	MsG0380017229.01	-0.805006	1.644308e-49	8.603070e-47
MsG0080048178.01	MsG0380017229.01	0.822333	2.505589e-53	2.091015e-50
MsG0080048809.01	MsG0380017229.01	-0.833013	6.803262e-56	7.736246e-53
MsG0080048830.01	MsG0380017229.01	0.828088	1.092002e-54	1.074422e-51
MsG0180000114.01	MsG0380017229.01	0.819643	1.042933e-52	8.071512e-50
MsG0180000176.01	MsG0380017229.01	0.817021	4.092176e-52	2.946460e-49
MsG0180000400.01	MsG0380017229.01	-0.830157	3.439688e-55	3.594726e-52
MsG0180000494.01	MsG0380017229.01	0.830817	2.371830e-55	2.526912e-52
MsG0180000555.01	MsG0380017229.01	0.848444	6.104489e-60	1.120561e-56
MsG0180000604.01	MsG0380017229.01	0.818721	1.690523e-52	1.275332e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017229.01.T01	MTR_3g103320	96.222	397	15	0	1	397	1	397	0.0	781
MsG0380017229.01.T01	MTR_5g015150	43.529	425	200	8	1	397	1	413	5.62e-116	344

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017229.01.T01	AT1G10150	51.531	392	179	4	7	390	13	401	2.48e-137	399
MsG0380017229.01.T01	AT1G59510	46.316	380	176	5	9	388	15	366	8.25e-118	348
MsG0380017229.01.T01	AT3G49790	41.622	370	175	6	5	373	12	341	1.19e-90	278

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Find 76 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCACGAAAAGGTGA+AGG	0.616934	3:+93815356	MsG0380017229.01.T01:CDS
AAAACCCTTGGAAATTGGTG+CGG	0.627520	3:+93815023	MsG0380017229.01.T01:CDS
AAAAGTGTGGGAAGGTTATA+GGG	0.303415	3:+93815232	MsG0380017229.01.T01:CDS
AAACACCACGAAAAGGTGAA+GGG	0.640062	3:+93815357	MsG0380017229.01.T01:CDS
AAAGTGTGGGAAGGTTATAG+GGG	0.564724	3:+93815233	MsG0380017229.01.T01:CDS
AACGAAAGCTTTGAGAAGCT+TGG	0.461504	3:-93814791	None:intergenic
AACGATTGAAACGGTTTCTG+CGG	0.546930	3:-93814839	None:intergenic
AACTGGGTTTGTTTCGGTTG+TGG	0.457163	3:+93815098	MsG0380017229.01.T01:CDS
AAGCTCTGTTGATGGAGTTG+GGG	0.629477	3:+93815533	MsG0380017229.01.T01:CDS
AAGTTGGAAAATGTTGATTC+GGG	0.380669	3:+93815162	MsG0380017229.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATATCAGAAGGTTTGAAAAG+GGG	+	Chr3:93815684-93815703	MsG0380017229.01.T01:CDS	30.0%
ATGCAAGTTGTTAGATATGT+AGG	+	Chr3:93815744-93815763	MsG0380017229.01.T01:CDS	30.0%
ATGTTATGGAGAATATCAGA+AGG	+	Chr3:93815672-93815691	MsG0380017229.01.T01:CDS	30.0%
CATTTGTGGAGTTTATGTTA+TGG	+	Chr3:93815658-93815677	MsG0380017229.01.T01:CDS	30.0%
GAATATCAGAAGGTTTGAAA+AGG	+	Chr3:93815682-93815701	MsG0380017229.01.T01:CDS	30.0%
GTTTCAAAGTCTTTAACACA+GGG	+	Chr3:93814973-93814992	MsG0380017229.01.T01:CDS	30.0%
TCCAGCAAAAATTTCATCAT+AGG	-	Chr3:93815325-93815344	None:intergenic	30.0%
TTTGAAAAACCCTTGGAAAT+TGG	+	Chr3:93815018-93815037	MsG0380017229.01.T01:CDS	30.0%
TTTGGTTAAAACATCTCATC+AGG	+	Chr3:93815416-93815435	MsG0380017229.01.T01:CDS	30.0%
ATCGTTGGAAACGATTGAAA+CGG	-	Chr3:93814851-93814870	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	93814658	93815851	93814658	ID=MsG0380017229.01;Name=MsG0380017229.01
Chr3	mRNA	93814658	93815851	93814658	ID=MsG0380017229.01.T01;Parent=MsG0380017229.01;Name=MsG0380017229.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|397
Chr3	exon	93814658	93815851	93814658	ID=MsG0380017229.01.T01:exon:1441;Parent=MsG0380017229.01.T01
Chr3	CDS	93814658	93815851	93814658	ID=MsG0380017229.01.T01:cds;Parent=MsG0380017229.01.T01

Gene Sequence

>MsG0380017229.01.T01

ATGGAACTTCCACTCAATTTCTCACGTAAACACCAAAAACGACTTATCCTAATCGCGCTTTTAGGATTCTCCGGTTACGGTGTTTATAAAGCTTATCATTTACCTTATTTAGTTCAAAAACGCCACCGCTTCACCAAGCTTCTCAAAGCTTTCGTTTCTCTTGCAGAACTCGCTTCCAGTTCCGCAGAAACCGTTTCAATCGTTTCCAACGATTTAAACAAATTTCTCAAGTCTGATTCTGATGAAATTCCCAATAGTTTCAAACAATTATCCAAAATTGCCATGTCCGAGGAATTTTCGATAACAATTTCTAGGGTTTCAAAGTCTTTAACACAGGGAATTTTGATGGGGTATGGTGAATTTGAAAAACCCTTGGAAATTGGTGCGGAAAAATCGAATTTTTCGGATAGGGTGTTGGATAAGCTTATGTCTGAGGCTGGAACTGGGTTTGTTTCGGTTGTGGTTGGAAGTTTTGCTAGGAATTTGGTTTTGGGTTTTCGTACGAAGTTGGAAAATGTTGATTCGGGGTCGAAATCTGATGGTATTTCTGGATTTGTGAGTGTGATTTGTGATGAAAAGTGTGGGAAGGTTATAGGGGATTGTGTGCAGACTTTTGTGGCTACTGCTGTTGCTGTTTTTCTTGATAAAACAATGGATGTTAACACCTATGATGAAATTTTTGCTGGAATGACGAATCCAAAACACCACGAAAAGGTGAAGGGAATTTTGGTTTCTCTATGTAATGGTGCTGTTGAGACTTTGGTTAAAACATCTCATCAGGTTTTGACTAATCCAAAAGGTAAATCTGATTTGAGTTCACCTAGGGAAAATGGGCGTTTGAAACCGGAAGCTTTTCTTCAGAAATTCAGAAATGGAAGCTCTGTTGATGGAGTTGGGGATTTTGGGTGGCTTGAACAGGTTAAATCAACTCTTTCTGTGCCAGCTAACCAGAGGTTTGTGCTTGATGTCACGGGGAGAGTGACATTCGAAACTGTGAGGTCATTTGTGGAGTTTATGTTATGGAGAATATCAGAAGGTTTGAAAAGGGGTGTTAATAAGGTTCATGACGACGTTGTAGACAAAGGAATGCAAGTTGTTAGATATGTAGGAGCTAAGTCGTCGGTTATTATTACCTTGTGTCTTGCTTTATATTTACATATTTTGGGTGGTAGTAGGATTCTAGTGGCTGCTTAG

Protein sequence

>MsG0380017229.01.T01

MELPLNFSRKHQKRLILIALLGFSGYGVYKAYHLPYLVQKRHRFTKLLKAFVSLAELASSSAETVSIVSNDLNKFLKSDSDEIPNSFKQLSKIAMSEEFSITISRVSKSLTQGILMGYGEFEKPLEIGAEKSNFSDRVLDKLMSEAGTGFVSVVVGSFARNLVLGFRTKLENVDSGSKSDGISGFVSVICDEKCGKVIGDCVQTFVATAVAVFLDKTMDVNTYDEIFAGMTNPKHHEKVKGILVSLCNGAVETLVKTSHQVLTNPKGKSDLSSPRENGRLKPEAFLQKFRNGSSVDGVGDFGWLEQVKSTLSVPANQRFVLDVTGRVTFETVRSFVEFMLWRISEGLKRGVNKVHDDVVDKGMQVVRYVGAKSSVIITLCLALYLHILGGSRILVAA*