AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580026067.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026067.01.T01 MTR_5g038870 97.590 83 2 0 1 83 276 358 6.29e-52 167
MsG0580026067.01.T01 MTR_4g108270 69.136 81 24 1 1 81 286 365 1.00e-35 124
MsG0580026067.01.T01 MTR_4g063940 54.217 83 38 0 1 83 295 377 2.27e-26 99.8
MsG0580026067.01.T01 MTR_7g009320 55.556 81 36 0 1 81 323 403 1.75e-25 97.8
MsG0580026067.01.T01 MTR_4g063930 53.012 83 39 0 1 83 374 456 2.71e-25 97.4
MsG0580026067.01.T01 MTR_4g125260 55.556 81 36 0 1 81 282 362 7.00e-25 96.3
MsG0580026067.01.T01 MTR_5g088400 56.098 82 35 1 1 81 270 351 9.68e-25 95.5
MsG0580026067.01.T01 MTR_4g063945 51.807 83 40 0 1 83 292 374 1.15e-24 95.1
MsG0580026067.01.T01 MTR_4g063945 51.807 83 40 0 1 83 290 372 1.20e-24 95.1
MsG0580026067.01.T01 MTR_2g096950 50.602 83 41 0 1 83 276 358 1.53e-24 94.7
MsG0580026067.01.T01 MTR_7g061660 55.422 83 37 0 1 83 275 357 3.49e-24 94.0
MsG0580026067.01.T01 MTR_2g041960 54.321 81 37 0 1 81 276 356 3.96e-24 94.4
MsG0580026067.01.T01 MTR_5g038450 50.617 81 40 0 1 81 336 416 6.89e-24 93.6
MsG0580026067.01.T01 MTR_8g469230 49.383 81 41 0 1 81 332 412 8.67e-24 93.2
MsG0580026067.01.T01 MTR_5g026370 55.556 81 36 0 1 81 288 368 2.67e-23 91.7
MsG0580026067.01.T01 MTR_7g074610 53.086 81 38 0 1 81 288 368 3.17e-23 91.3
MsG0580026067.01.T01 MTR_8g088410 49.383 81 41 0 1 81 270 350 3.74e-23 90.9
MsG0580026067.01.T01 MTR_4g063935 50.602 83 41 0 1 83 293 375 8.24e-23 90.1
MsG0580026067.01.T01 MTR_4g063935 50.602 83 41 0 1 83 313 395 1.14e-22 89.7
MsG0580026067.01.T01 MTR_2g096960 48.193 83 42 1 1 83 278 359 2.49e-22 88.6
MsG0580026067.01.T01 MTR_1g015020 50.000 82 40 1 1 81 279 360 3.15e-22 88.2
MsG0580026067.01.T01 MTR_5g079840 45.679 81 44 0 1 81 277 357 4.74e-22 88.2
MsG0580026067.01.T01 MTR_4g123480 47.561 82 43 0 1 82 105 186 6.86e-22 84.7
MsG0580026067.01.T01 MTR_3g105320 46.914 81 43 0 1 81 280 360 1.01e-21 87.0
MsG0580026067.01.T01 MTR_8g073560 49.383 81 41 0 1 81 280 360 2.13e-21 86.3
MsG0580026067.01.T01 MTR_4g115120 48.148 81 42 0 1 81 310 390 2.27e-21 86.3
MsG0580026067.01.T01 MTR_8g073700 49.383 81 41 0 1 81 169 249 3.67e-21 84.3
MsG0580026067.01.T01 MTR_8g100155 48.148 81 42 0 1 81 268 348 3.71e-21 85.5
MsG0580026067.01.T01 MTR_2g096970 45.783 83 44 1 1 83 264 345 3.91e-21 85.1
MsG0580026067.01.T01 MTR_3g040800 57.317 82 34 1 1 81 308 389 4.54e-21 85.5
MsG0580026067.01.T01 MTR_6g011330 50.617 81 40 0 1 81 333 413 1.78e-20 84.0
MsG0580026067.01.T01 MTR_3g067780 39.759 83 50 0 1 83 146 228 2.56e-20 81.3
MsG0580026067.01.T01 MTR_8g020920 49.383 81 41 0 1 81 276 356 6.31e-20 82.4
MsG0580026067.01.T01 MTR_3g067795 40.964 83 49 0 1 83 198 280 2.00e-19 80.1
MsG0580026067.01.T01 MTR_3g067795 40.964 83 49 0 1 83 198 280 2.29e-19 80.1
MsG0580026067.01.T01 MTR_7g109670 48.148 81 42 0 1 81 575 655 3.13e-19 80.5
MsG0580026067.01.T01 MTR_3g067795 40.964 83 49 0 1 83 278 360 5.01e-19 79.7
MsG0580026067.01.T01 MTR_3g067795 40.964 83 49 0 1 83 278 360 5.59e-19 79.3
MsG0580026067.01.T01 MTR_2g095880 40.244 82 49 0 1 82 285 366 1.25e-18 78.6
MsG0580026067.01.T01 MTR_5g023980 48.193 83 41 1 1 81 279 361 5.04e-18 76.6
MsG0580026067.01.T01 MTR_1g117060 39.024 82 50 0 1 82 291 372 7.06e-18 76.6
MsG0580026067.01.T01 MTR_1g067140 36.585 82 52 0 1 82 268 349 8.01e-18 76.3
MsG0580026067.01.T01 MTR_7g073230 44.444 81 45 0 1 81 365 445 8.68e-18 76.3
MsG0580026067.01.T01 MTR_7g100500 36.585 82 52 0 1 82 267 348 8.92e-18 75.9
MsG0580026067.01.T01 MTR_4g063950 40.741 81 48 0 1 81 289 369 2.30e-17 75.1
MsG0580026067.01.T01 MTR_2g022810 41.250 80 47 0 2 81 274 353 3.65e-17 74.3
MsG0580026067.01.T01 MTR_3g067770 38.554 83 51 0 1 83 197 279 4.51e-17 73.2
MsG0580026067.01.T01 MTR_4g018790 40.964 83 49 0 1 83 366 448 6.04e-17 73.9
MsG0580026067.01.T01 MTR_3g067770 38.554 83 51 0 1 83 270 352 7.72e-17 73.2
MsG0580026067.01.T01 MTR_4g028140 41.975 81 47 0 1 81 404 484 8.05e-17 73.6
MsG0580026067.01.T01 MTR_3g067765 38.554 83 51 0 1 83 224 306 8.25e-17 72.8
MsG0580026067.01.T01 MTR_7g058810 39.024 82 50 0 1 82 287 368 8.82e-17 73.6
MsG0580026067.01.T01 MTR_3g050780 40.000 80 48 0 2 81 273 352 8.93e-17 73.6
MsG0580026067.01.T01 MTR_2g095920 37.805 82 51 0 1 82 398 479 8.99e-17 73.6
MsG0580026067.01.T01 MTR_3g462840 36.585 82 51 1 1 81 265 346 3.43e-16 71.6
MsG0580026067.01.T01 MTR_7g116660 41.463 82 48 0 1 82 267 348 3.76e-16 71.6
MsG0580026067.01.T01 MTR_2g019990 38.272 81 50 0 1 81 147 227 5.15e-16 71.2
MsG0580026067.01.T01 MTR_5g099130 44.444 81 45 0 1 81 302 382 5.47e-16 71.2
MsG0580026067.01.T01 MTR_2g019990 38.272 81 50 0 1 81 283 363 5.59e-16 71.2
MsG0580026067.01.T01 MTR_5g099130 44.444 81 45 0 1 81 298 378 5.59e-16 71.2
MsG0580026067.01.T01 MTR_5g092120 40.000 80 48 0 2 81 266 345 6.96e-16 70.9
MsG0580026067.01.T01 MTR_5g099130 44.444 81 45 0 1 81 291 371 7.86e-16 70.5
MsG0580026067.01.T01 MTR_5g013610 37.349 83 52 0 1 83 264 346 8.30e-16 70.5
MsG0580026067.01.T01 MTR_3g115500 34.568 81 53 0 1 81 147 227 1.66e-15 68.9
MsG0580026067.01.T01 MTR_7g083500 41.463 82 47 1 1 82 274 354 1.69e-15 69.7
MsG0580026067.01.T01 MTR_6g011570 37.805 82 50 1 1 81 268 349 2.04e-15 69.7
MsG0580026067.01.T01 MTR_1g086870 40.741 81 48 0 1 81 481 561 2.47e-15 69.3
MsG0580026067.01.T01 MTR_3g115500 34.568 81 53 0 1 81 261 341 3.19e-15 68.9
MsG0580026067.01.T01 MTR_3g115500 34.568 81 53 0 1 81 243 323 4.68e-15 68.6
MsG0580026067.01.T01 MTR_4g099130 38.554 83 51 0 1 83 270 352 4.90e-15 68.6
MsG0580026067.01.T01 MTR_8g023560 42.169 83 48 0 1 83 572 654 9.35e-15 67.8
MsG0580026067.01.T01 MTR_8g023560 42.169 83 48 0 1 83 603 685 9.37e-15 67.8
MsG0580026067.01.T01 MTR_1g079430 37.805 82 51 0 1 82 266 347 1.13e-14 67.4
MsG0580026067.01.T01 MTR_1g079430 37.805 82 51 0 1 82 265 346 1.14e-14 67.4
MsG0580026067.01.T01 MTR_2g084120 41.975 81 47 0 1 81 290 370 1.41e-14 67.0
MsG0580026067.01.T01 MTR_3g115490 44.578 83 46 0 1 83 281 363 1.52e-14 67.0
MsG0580026067.01.T01 MTR_7g117520 43.373 83 47 0 1 83 608 690 1.62e-14 67.0
MsG0580026067.01.T01 MTR_4g126970 43.210 81 46 0 1 81 323 403 2.93e-14 66.2
MsG0580026067.01.T01 MTR_2g095950 32.927 82 55 0 1 82 253 334 4.01e-14 65.9
MsG0580026067.01.T01 MTR_8g008820 38.272 81 50 0 1 81 277 357 4.08e-14 65.9
MsG0580026067.01.T01 MTR_7g101800 37.805 82 51 0 1 82 307 388 6.49e-14 65.5
MsG0580026067.01.T01 MTR_1g063910 38.554 83 51 0 1 83 290 372 6.88e-14 65.1
MsG0580026067.01.T01 MTR_1g063910 38.554 83 51 0 1 83 299 381 7.70e-14 65.1
MsG0580026067.01.T01 MTR_7g101800 37.805 82 51 0 1 82 295 376 8.40e-14 65.1
MsG0580026067.01.T01 MTR_7g101800 37.805 82 51 0 1 82 287 368 9.59e-14 64.7
MsG0580026067.01.T01 MTR_2g012670 38.272 81 50 0 1 81 629 709 1.55e-13 64.3
MsG0580026067.01.T01 MTR_2g024330 39.759 83 50 0 1 83 615 697 2.15e-13 63.9
MsG0580026067.01.T01 MTR_4g062030 35.000 80 52 0 1 80 57 136 2.25e-13 61.2
MsG0580026067.01.T01 MTR_4g061990 35.000 80 52 0 1 80 62 141 2.84e-13 60.8
MsG0580026067.01.T01 MTR_4g061420 35.000 80 52 0 1 80 64 143 3.05e-13 60.8
MsG0580026067.01.T01 MTR_4g118855 37.037 81 51 0 1 81 265 345 3.13e-13 63.2
MsG0580026067.01.T01 MTR_4g131900 32.927 82 55 0 1 82 295 376 3.25e-13 63.2
MsG0580026067.01.T01 MTR_4g005130 38.554 83 51 0 1 83 684 766 3.41e-13 63.2
MsG0580026067.01.T01 MTR_2g094910 40.964 83 47 2 1 82 275 356 4.17e-13 63.2
MsG0580026067.01.T01 MTR_1g116520 41.975 81 46 1 1 81 311 390 6.56e-13 62.4
MsG0580026067.01.T01 MTR_1g116520 41.975 81 46 1 1 81 270 349 6.72e-13 62.4
MsG0580026067.01.T01 MTR_1g082580 38.272 81 50 0 1 81 344 424 7.38e-13 62.4
MsG0580026067.01.T01 MTR_4g058710 38.554 83 49 2 1 82 427 508 7.64e-13 62.4
MsG0580026067.01.T01 MTR_1g020060 32.099 81 55 0 1 81 243 323 1.39e-12 61.2
MsG0580026067.01.T01 MTR_4g061860 35.000 80 52 0 1 80 274 353 1.65e-12 61.2
MsG0580026067.01.T01 MTR_4g123870 38.272 81 49 1 1 81 296 375 3.15e-12 60.5
MsG0580026067.01.T01 MTR_4g046113 40.741 81 48 0 1 81 747 827 4.90e-12 60.1
MsG0580026067.01.T01 MTR_4g123870 38.272 81 49 1 1 81 265 344 4.96e-12 60.1
MsG0580026067.01.T01 MTR_4g133920 33.333 81 54 0 1 81 229 309 5.24e-12 59.7
MsG0580026067.01.T01 MTR_3g019120 43.210 81 45 1 1 81 408 487 6.14e-12 59.7
MsG0580026067.01.T01 MTR_3g019120 43.210 81 45 1 1 81 368 447 8.42e-12 59.3
MsG0580026067.01.T01 MTR_4g046113 40.741 81 48 0 1 81 626 706 9.00e-12 59.3
MsG0580026067.01.T01 MTR_2g090120 40.741 81 48 0 1 81 684 764 1.31e-11 58.9
MsG0580026067.01.T01 MTR_4g126270 35.802 81 52 0 1 81 733 813 2.35e-11 58.2
MsG0580026067.01.T01 MTR_2g095960 38.554 83 49 2 1 82 274 355 2.45e-11 58.2
MsG0580026067.01.T01 MTR_3g106320 37.037 81 51 0 1 81 289 369 5.20e-11 57.0
MsG0580026067.01.T01 MTR_1g086230 42.683 82 44 2 1 81 381 460 5.72e-11 57.0
MsG0580026067.01.T01 MTR_3g117850 38.824 85 46 3 1 82 341 422 6.26e-11 57.0
MsG0580026067.01.T01 MTR_3g117850 38.824 85 46 3 1 82 371 452 6.29e-11 57.0
MsG0580026067.01.T01 MTR_3g117850 38.824 85 46 3 1 82 470 551 6.35e-11 57.0
MsG0580026067.01.T01 MTR_5g035030 36.585 82 51 1 1 81 259 340 9.50e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580026067.01.T01 AT2G02800 72.289 83 23 0 1 83 283 365 3.89e-38 131
MsG0580026067.01.T01 AT2G02800 72.289 83 23 0 1 83 283 365 3.89e-38 131
MsG0580026067.01.T01 AT1G14370 69.880 83 25 0 1 83 286 368 5.32e-36 125
MsG0580026067.01.T01 AT1G26970 69.136 81 25 0 1 81 167 247 1.64e-35 122
MsG0580026067.01.T01 AT1G26970 69.136 81 25 0 1 81 282 362 5.93e-34 120
MsG0580026067.01.T01 AT1G69790 62.651 83 31 0 1 83 271 353 1.89e-31 113
MsG0580026067.01.T01 AT1G69790 62.651 83 31 0 1 83 282 364 2.17e-31 113
MsG0580026067.01.T01 AT1G74490 60.241 83 32 1 1 83 285 366 3.51e-30 110
MsG0580026067.01.T01 AT2G05940 58.537 82 34 0 1 82 284 365 2.15e-26 100
MsG0580026067.01.T01 AT3G28690 53.086 81 38 0 1 81 226 306 9.51e-26 97.8
MsG0580026067.01.T01 AT3G28690 53.086 81 38 0 1 81 275 355 1.11e-25 98.2
MsG0580026067.01.T01 AT5G02290 54.321 81 37 0 1 81 270 350 1.38e-25 97.4
MsG0580026067.01.T01 AT5G02290 54.321 81 37 0 1 81 270 350 1.38e-25 97.4
MsG0580026067.01.T01 AT3G28690 53.086 81 38 0 1 81 326 406 2.66e-25 97.4
MsG0580026067.01.T01 AT1G07570 54.321 81 37 0 1 81 154 234 2.84e-25 95.5
MsG0580026067.01.T01 AT1G07570 54.321 81 37 0 1 81 270 350 8.55e-25 95.5
MsG0580026067.01.T01 AT1G07570 54.321 81 37 0 1 81 270 350 8.55e-25 95.5
MsG0580026067.01.T01 AT1G07570 54.321 81 37 0 1 81 270 350 8.55e-25 95.5
MsG0580026067.01.T01 AT1G07570 54.321 81 37 0 1 81 281 361 8.98e-25 95.5
MsG0580026067.01.T01 AT3G01300 49.383 81 41 0 1 81 336 416 1.01e-23 93.2
MsG0580026067.01.T01 AT5G01020 51.852 81 39 0 1 81 266 346 1.11e-22 89.7
MsG0580026067.01.T01 AT2G28930 51.807 83 40 0 1 83 271 353 1.15e-22 89.7
MsG0580026067.01.T01 AT2G28930 51.807 83 40 0 1 83 282 364 1.22e-22 89.7
MsG0580026067.01.T01 AT2G28930 51.807 83 40 0 1 83 274 356 1.32e-22 89.7
MsG0580026067.01.T01 AT5G15080 48.148 81 42 0 1 81 342 422 1.38e-22 90.1
MsG0580026067.01.T01 AT3G55450 46.914 81 43 0 1 81 301 381 2.51e-21 86.3
MsG0580026067.01.T01 AT3G55450 46.914 81 43 0 1 81 264 344 3.65e-21 85.5
MsG0580026067.01.T01 AT2G17220 49.383 81 41 0 1 81 287 367 1.13e-20 84.3
MsG0580026067.01.T01 AT2G17220 49.383 81 41 0 1 81 286 366 1.20e-20 84.3
MsG0580026067.01.T01 AT1G72540 49.383 81 41 0 1 81 281 361 2.75e-20 83.6
MsG0580026067.01.T01 AT5G35580 49.383 81 41 0 1 81 285 365 3.69e-20 83.2
MsG0580026067.01.T01 AT5G35580 49.383 81 41 0 1 81 273 353 4.35e-20 82.8
MsG0580026067.01.T01 AT5G56460 45.679 81 44 0 1 81 276 356 4.44e-20 82.8
MsG0580026067.01.T01 AT2G39660 44.578 83 46 0 1 83 269 351 1.12e-19 81.6
MsG0580026067.01.T01 AT3G09830 44.578 83 46 0 1 83 285 367 1.46e-19 81.3
MsG0580026067.01.T01 AT3G09830 44.578 83 46 0 1 83 285 367 1.46e-19 81.3
MsG0580026067.01.T01 AT3G09830 44.578 83 46 0 1 83 285 367 1.46e-19 81.3
MsG0580026067.01.T01 AT1G61590 49.383 81 41 0 1 81 296 376 2.20e-19 80.9
MsG0580026067.01.T01 AT1G61860 44.444 81 45 0 1 81 279 359 5.09e-19 79.7
MsG0580026067.01.T01 AT2G26290 44.444 81 45 0 1 81 285 365 9.63e-19 79.0
MsG0580026067.01.T01 AT2G07180 44.444 81 45 0 1 81 287 367 1.98e-18 78.2
MsG0580026067.01.T01 AT2G07180 44.444 81 45 0 1 81 287 367 1.98e-18 78.2
MsG0580026067.01.T01 AT1G07870 39.024 82 50 0 1 82 297 378 2.17e-18 78.2
MsG0580026067.01.T01 AT4G02010 44.444 81 45 0 1 81 575 655 2.58e-18 77.8
MsG0580026067.01.T01 AT1G07870 39.024 82 50 0 1 82 297 378 4.59e-18 77.0
MsG0580026067.01.T01 AT3G20530 43.210 81 46 0 1 81 277 357 4.62e-18 77.0
MsG0580026067.01.T01 AT5G03320 43.373 83 47 0 1 83 282 364 1.25e-17 75.9
MsG0580026067.01.T01 AT5G03320 43.373 83 47 0 1 83 282 364 1.25e-17 75.9
MsG0580026067.01.T01 AT2G28940 42.857 84 47 1 1 83 306 389 2.51e-17 75.1
MsG0580026067.01.T01 AT2G28940 42.857 84 47 1 1 83 187 270 2.77e-17 74.7
MsG0580026067.01.T01 AT1G76360 44.444 81 45 0 1 81 363 443 2.17e-16 72.4
MsG0580026067.01.T01 AT5G02800 35.366 82 53 0 1 82 267 348 3.45e-16 71.6
MsG0580026067.01.T01 AT5G18610 38.272 81 50 0 1 81 277 357 4.55e-16 71.6
MsG0580026067.01.T01 AT5G18610 38.272 81 50 0 1 81 277 357 4.55e-16 71.6
MsG0580026067.01.T01 AT5G18610 38.272 81 50 0 1 81 277 357 4.55e-16 71.6
MsG0580026067.01.T01 AT5G13160 34.146 82 54 0 1 82 280 361 6.32e-16 71.2
MsG0580026067.01.T01 AT3G07070 40.741 81 48 0 1 81 273 353 7.75e-16 70.9
MsG0580026067.01.T01 AT2G39110 39.759 83 50 0 1 83 277 359 8.71e-16 70.5
MsG0580026067.01.T01 AT1G20650 37.037 81 51 0 1 81 271 351 1.08e-15 70.5
MsG0580026067.01.T01 AT2G39110 39.759 83 50 0 1 83 292 374 1.09e-15 70.5
MsG0580026067.01.T01 AT3G24790 40.244 82 49 0 1 82 241 322 1.99e-15 69.3
MsG0580026067.01.T01 AT3G24790 40.244 82 49 0 1 82 259 340 2.20e-15 69.3
MsG0580026067.01.T01 AT3G02810 39.024 82 50 0 1 82 260 341 2.50e-15 69.3
MsG0580026067.01.T01 AT2G28590 35.366 82 53 0 1 82 292 373 6.47e-15 68.2
MsG0580026067.01.T01 AT4G13190 35.366 82 53 0 1 82 118 199 1.89e-14 65.9
MsG0580026067.01.T01 AT4G13190 35.366 82 53 0 1 82 118 199 1.89e-14 65.9
MsG0580026067.01.T01 AT3G08760 38.272 81 50 0 1 81 372 452 4.26e-14 65.9
MsG0580026067.01.T01 AT3G08760 38.272 81 50 0 1 81 372 452 4.26e-14 65.9
MsG0580026067.01.T01 AT3G08760 38.272 81 50 0 1 81 372 452 4.26e-14 65.9
MsG0580026067.01.T01 AT4G13190 35.366 82 53 0 1 82 176 257 4.95e-14 65.5
MsG0580026067.01.T01 AT3G58690 43.210 81 46 0 1 81 283 363 5.26e-14 65.5
MsG0580026067.01.T01 AT5G16500 36.585 82 52 0 1 82 269 350 1.00e-13 64.7
MsG0580026067.01.T01 AT4G22130 39.759 83 50 0 1 83 589 671 1.02e-13 64.7
MsG0580026067.01.T01 AT4G13190 35.366 82 53 0 1 82 265 346 1.03e-13 64.7
MsG0580026067.01.T01 AT4G22130 39.759 83 50 0 1 83 448 530 1.36e-13 64.3
MsG0580026067.01.T01 AT1G76370 35.802 81 52 0 1 81 268 348 2.90e-13 63.5
MsG0580026067.01.T01 AT1G48220 38.272 81 49 1 1 81 266 345 4.45e-13 62.8
MsG0580026067.01.T01 AT2G20300 38.272 81 50 0 1 81 536 616 5.52e-13 62.8
MsG0580026067.01.T01 AT2G20850 40.244 82 49 0 1 82 672 753 1.38e-12 61.6
MsG0580026067.01.T01 AT1G48210 39.506 81 48 1 1 81 265 344 1.74e-12 61.2
MsG0580026067.01.T01 AT1G48210 39.506 81 48 1 1 81 265 344 1.74e-12 61.2
MsG0580026067.01.T01 AT1G48210 39.506 81 48 1 1 81 265 344 1.74e-12 61.2
MsG0580026067.01.T01 AT1G48210 39.506 81 48 1 1 81 265 344 1.74e-12 61.2
MsG0580026067.01.T01 AT5G47070 34.940 83 54 0 1 83 285 367 2.07e-12 61.2
MsG0580026067.01.T01 AT4G03390 40.741 81 48 0 1 81 679 759 2.17e-12 61.2
MsG0580026067.01.T01 AT4G03390 40.741 81 48 0 1 81 679 759 2.17e-12 61.2
MsG0580026067.01.T01 AT4G35600 37.037 81 51 0 1 81 285 365 3.95e-12 60.5
MsG0580026067.01.T01 AT4G35600 37.037 81 51 0 1 81 286 366 4.03e-12 60.5
MsG0580026067.01.T01 AT3G14350 40.789 76 45 0 1 76 610 685 6.51e-12 59.7
MsG0580026067.01.T01 AT3G14350 40.789 76 45 0 1 76 573 648 7.58e-12 59.7
MsG0580026067.01.T01 AT1G54820 35.802 81 52 0 1 81 348 428 7.99e-12 59.3
MsG0580026067.01.T01 AT1G53730 40.789 76 45 0 1 76 607 682 8.14e-12 59.3
MsG0580026067.01.T01 AT3G14350 40.789 76 45 0 1 76 582 657 8.53e-12 59.3
MsG0580026067.01.T01 AT2G43230 40.741 81 47 1 1 81 344 423 1.35e-11 58.9
MsG0580026067.01.T01 AT2G43230 40.741 81 47 1 1 81 310 389 1.47e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT2G30740 39.506 81 48 1 1 81 270 349 1.66e-11 58.5
MsG0580026067.01.T01 AT1G11130 39.506 81 49 0 1 81 684 764 1.99e-11 58.5
MsG0580026067.01.T01 AT1G11130 39.506 81 49 0 1 81 606 686 2.26e-11 58.2
MsG0580026067.01.T01 AT3G59350 39.506 81 48 1 1 81 327 406 3.71e-11 57.4
MsG0580026067.01.T01 AT1G24030 39.024 82 49 1 1 81 167 248 3.74e-11 57.4
MsG0580026067.01.T01 AT1G24030 39.024 82 49 1 1 81 204 285 4.23e-11 57.4
MsG0580026067.01.T01 AT5G11410 34.146 82 54 0 1 82 248 329 4.86e-11 57.0
MsG0580026067.01.T01 AT1G24030 39.024 82 49 1 1 81 272 353 5.37e-11 57.0
MsG0580026067.01.T01 AT3G59350 39.506 81 48 1 1 81 270 349 6.62e-11 57.0
MsG0580026067.01.T01 AT3G62220 40.741 81 47 1 1 81 173 252 6.84e-11 56.6
MsG0580026067.01.T01 AT3G62220 40.741 81 47 1 1 81 266 345 8.59e-11 56.6
MsG0580026067.01.T01 AT3G62220 40.741 81 47 1 1 81 266 345 8.59e-11 56.6

Find 15 sgRNAs with CRISPR-Local

Find 19 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGCCCAGTCTACTAGATTC+TGG 0.292066 5:+30119955 None:intergenic
GAAGGTCAATATCCACAAAA+AGG 0.336962 5:-30119879 MsG0580026067.01.T01:CDS
GCGATAAAAGAAGACTATTT+CGG 0.344317 5:-30119920 MsG0580026067.01.T01:CDS
TTGCCTTAGCTTCTCTGTTA+AGG 0.371501 5:+30119823 None:intergenic
AAGAAGACTATTTCGGATCA+TGG 0.394031 5:-30119913 MsG0580026067.01.T01:CDS
GCTAAAACCTCTGTCATTGA+AGG 0.477535 5:+30119798 None:intergenic
ATCATGGATTCAAAATTAGA+AGG 0.478383 5:-30119897 MsG0580026067.01.T01:CDS
TGGACCAGAATCTAGTAGAC+TGG 0.481093 5:-30119959 MsG0580026067.01.T01:CDS
GACTGGGCAAAACCATATTT+AGG 0.486049 5:-30119942 MsG0580026067.01.T01:CDS
GCCGTTGATAAAACAATAGC+TGG 0.497067 5:-30119984 MsG0580026067.01.T01:CDS
ATGCCTTAACAGAGAAGCTA+AGG 0.540127 5:-30119826 MsG0580026067.01.T01:CDS
TGATAAAACAATAGCTGGCG+TGG 0.586152 5:-30119979 MsG0580026067.01.T01:CDS
GGACCAGAATCTAGTAGACT+GGG 0.615356 5:-30119958 MsG0580026067.01.T01:CDS
GGCAAGGCCTTCAATGACAG+AGG 0.622493 5:-30119805 MsG0580026067.01.T01:CDS
TTAACAGAGAAGCTAAGGCA+AGG 0.654804 5:-30119821 MsG0580026067.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCATGGATTCAAAATTAGA+AGG - Chr5:30119896-30119915 MsG0580026067.01.T01:CDS 25.0%
GCGATAAAAGAAGACTATTT+CGG - Chr5:30119873-30119892 MsG0580026067.01.T01:CDS 30.0%
! CTTCTTTTATCGCCTAAATA+TGG + Chr5:30119866-30119885 None:intergenic 30.0%
AAGAAGACTATTTCGGATCA+TGG - Chr5:30119880-30119899 MsG0580026067.01.T01:CDS 35.0%
GAAGGTCAATATCCACAAAA+AGG - Chr5:30119914-30119933 MsG0580026067.01.T01:CDS 35.0%
!! GCCAGCTATTGTTTTATCAA+CGG + Chr5:30119813-30119832 None:intergenic 35.0%
ATGCCTTAACAGAGAAGCTA+AGG - Chr5:30119967-30119986 MsG0580026067.01.T01:CDS 40.0%
GACTGGGCAAAACCATATTT+AGG - Chr5:30119851-30119870 MsG0580026067.01.T01:CDS 40.0%
GCTAAAACCTCTGTCATTGA+AGG + Chr5:30119998-30120017 None:intergenic 40.0%
TGATAAAACAATAGCTGGCG+TGG - Chr5:30119814-30119833 MsG0580026067.01.T01:CDS 40.0%
TTAACAGAGAAGCTAAGGCA+AGG - Chr5:30119972-30119991 MsG0580026067.01.T01:CDS 40.0%
TTGCCTTAGCTTCTCTGTTA+AGG + Chr5:30119973-30119992 None:intergenic 40.0%
! GCCGTTGATAAAACAATAGC+TGG - Chr5:30119809-30119828 MsG0580026067.01.T01:CDS 40.0%
!! TCCACAAAAAGGAGCATTCA+TGG - Chr5:30119925-30119944 MsG0580026067.01.T01:CDS 40.0%
GGACCAGAATCTAGTAGACT+GGG - Chr5:30119835-30119854 MsG0580026067.01.T01:CDS 45.0%
TGGACCAGAATCTAGTAGAC+TGG - Chr5:30119834-30119853 MsG0580026067.01.T01:CDS 45.0%
TTGCCCAGTCTACTAGATTC+TGG + Chr5:30119841-30119860 None:intergenic 45.0%
! GCCATGAATGCTCCTTTTTG+TGG + Chr5:30119929-30119948 None:intergenic 45.0%
GGCAAGGCCTTCAATGACAG+AGG - Chr5:30119988-30120007 MsG0580026067.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 30119782 30120033 30119782 ID=MsG0580026067.01;Name=MsG0580026067.01
Chr5 mRNA 30119782 30120033 30119782 ID=MsG0580026067.01.T01;Parent=MsG0580026067.01;Name=MsG0580026067.01.T01;_AED=0.47;_eAED=0.47;_QI=0|-1|0|1|-1|1|1|0|83
Chr5 exon 30119782 30120033 30119782 ID=MsG0580026067.01.T01:exon:33749;Parent=MsG0580026067.01.T01
Chr5 CDS 30119782 30120033 30119782 ID=MsG0580026067.01.T01:cds;Parent=MsG0580026067.01.T01
Gene Sequence

>MsG0580026067.01.T01

ATGCTTGAACTTTTATCTGGAAGACGAGCCGTTGATAAAACAATAGCTGGCGTGGACCAGAATCTAGTAGACTGGGCAAAACCATATTTAGGCGATAAAAGAAGACTATTTCGGATCATGGATTCAAAATTAGAAGGTCAATATCCACAAAAAGGAGCATTCATGGCTGCTACACTTGCACTACAATGCCTTAACAGAGAAGCTAAGGCAAGGCCTTCAATGACAGAGGTTTTAGCAACTCTAAACAGATAG

Protein sequence

>MsG0580026067.01.T01

MLELLSGRRAVDKTIAGVDQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNREAKARPSMTEVLATLNR*