Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024826.01.T01 | XP_003611751.2 | 93.75 | 288 | 17 | 1 | 1 | 287 | 1 | 288 | 0 | 541 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024826.01.T01 | P22335 | 55.911 | 313 | 100 | 10 | 1 | 287 | 1 | 301 | 9.07E-95 | 284 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024826.01.T01 | I3SQU1 | 93.750 | 288 | 17 | 1 | 1 | 287 | 1 | 288 | 0.0 | 541 |
| Gene ID | Type | Classification |
|---|---|---|
| MsG0580024826.01.T01 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048177.01 | MsG0580024826.01 | 0.848989 | 4.310158e-60 | 8.053020e-57 |
| MsG0080048178.01 | MsG0580024826.01 | 0.851424 | 8.957709e-61 | 1.812404e-57 |
| MsG0080048210.01 | MsG0580024826.01 | 0.821093 | 4.848970e-53 | 3.907461e-50 |
| MsG0180000585.01 | MsG0580024826.01 | 0.824100 | 9.689081e-54 | 8.499757e-51 |
| MsG0180000822.01 | MsG0580024826.01 | 0.800437 | 1.442028e-48 | 6.714409e-46 |
| MsG0180003241.01 | MsG0580024826.01 | 0.804457 | 2.140846e-49 | 1.104335e-46 |
| MsG0180004222.01 | MsG0580024826.01 | 0.807165 | 5.775149e-50 | 3.193916e-47 |
| MsG0180004462.01 | MsG0580024826.01 | 0.816341 | 5.813552e-52 | 4.108657e-49 |
| MsG0180004762.01 | MsG0580024826.01 | 0.827971 | 1.165116e-54 | 1.142466e-51 |
| MsG0180005172.01 | MsG0580024826.01 | 0.813278 | 2.775431e-51 | 1.804571e-48 |
| MsG0180005743.01 | MsG0580024826.01 | 0.800109 | 1.681399e-48 | 7.763839e-46 |
| MsG0180005813.01 | MsG0580024826.01 | 0.819763 | 9.790997e-53 | 7.603345e-50 |
| MsG0180006106.01 | MsG0580024826.01 | 0.807484 | 4.941210e-50 | 2.755534e-47 |
| MsG0280006432.01 | MsG0580024826.01 | 0.818743 | 1.671734e-52 | 1.261895e-49 |
| MsG0280010614.01 | MsG0580024826.01 | 0.811414 | 7.085606e-51 | 4.383296e-48 |
| MsG0280011105.01 | MsG0580024826.01 | 0.839271 | 1.751256e-57 | 2.405939e-54 |
| MsG0380011754.01 | MsG0580024826.01 | 0.807507 | 4.886783e-50 | 2.726849e-47 |
| MsG0380012033.01 | MsG0580024826.01 | 0.834618 | 2.700637e-56 | 3.222171e-53 |
| MsG0380013379.01 | MsG0580024826.01 | 0.800215 | 1.600109e-48 | 7.408508e-46 |
| MsG0380014163.01 | MsG0580024826.01 | 0.850941 | 1.225923e-60 | 2.441523e-57 |
| MsG0380014913.01 | MsG0580024826.01 | 0.836884 | 7.202929e-57 | 9.200265e-54 |
| MsG0480019502.01 | MsG0580024826.01 | 0.812531 | 4.045481e-51 | 2.578595e-48 |
| MsG0480021021.01 | MsG0580024826.01 | 0.810278 | 1.248079e-50 | 7.491330e-48 |
| MsG0480021642.01 | MsG0580024826.01 | 0.847922 | 8.510584e-60 | 1.536196e-56 |
| MsG0480021900.01 | MsG0580024826.01 | 0.826444 | 2.703391e-54 | 2.535776e-51 |
| MsG0480022406.01 | MsG0580024826.01 | 0.803589 | 3.243611e-49 | 1.636399e-46 |
| MsG0480022408.01 | MsG0580024826.01 | 0.802279 | 6.049144e-49 | 2.951237e-46 |
| MsG0480022479.01 | MsG0580024826.01 | 0.804813 | 1.803879e-49 | 9.391926e-47 |
| MsG0480022661.01 | MsG0580024826.01 | 0.827240 | 1.744798e-54 | 1.674835e-51 |
| MsG0480023224.01 | MsG0580024826.01 | 0.814452 | 1.529858e-51 | 1.026902e-48 |
| MsG0480023903.01 | MsG0580024826.01 | 0.805103 | 1.569249e-49 | 8.230953e-47 |
| MsG0580024205.01 | MsG0580024826.01 | 0.857887 | 1.201792e-62 | 3.011013e-59 |
| MsG0580024682.01 | MsG0580024826.01 | 0.817749 | 2.805962e-52 | 2.061039e-49 |
| MsG0580024826.01 | MsG0580024856.01 | 0.830787 | 2.412351e-55 | 2.567833e-52 |
| MsG0580024826.01 | MsG0580025045.01 | 0.812192 | 4.796892e-51 | 3.029911e-48 |
| MsG0580024826.01 | MsG0580025236.01 | 0.824424 | 8.132346e-54 | 7.199982e-51 |
| MsG0580024826.01 | MsG0580026068.01 | 0.854780 | 9.801845e-62 | 2.214088e-58 |
| MsG0580024826.01 | MsG0580026596.01 | 0.816380 | 5.697787e-52 | 4.030949e-49 |
| MsG0580024826.01 | MsG0580027129.01 | 0.809579 | 1.764434e-50 | 1.039912e-47 |
| MsG0580024826.01 | MsG0580027532.01 | 0.836990 | 6.768550e-57 | 8.672762e-54 |
| MsG0580024826.01 | MsG0580027847.01 | 0.803918 | 2.771562e-49 | 1.410160e-46 |
| MsG0580024826.01 | MsG0580028980.01 | 0.851838 | 6.838589e-61 | 1.401916e-57 |
| MsG0580024826.01 | MsG0580029906.01 | 0.843554 | 1.304664e-58 | 2.048782e-55 |
| MsG0580024826.01 | MsG0680034093.01 | 0.810095 | 1.366372e-50 | 8.162738e-48 |
| MsG0580024826.01 | MsG0680035656.01 | 0.823391 | 1.420285e-53 | 1.221161e-50 |
| MsG0580024826.01 | MsG0780036630.01 | 0.813100 | 3.036605e-51 | 1.964704e-48 |
| MsG0580024826.01 | MsG0780036635.01 | 0.806367 | 8.515961e-50 | 4.613728e-47 |
| MsG0580024826.01 | MsG0780037975.01 | 0.804835 | 1.785396e-49 | 9.300738e-47 |
| MsG0580024826.01 | MsG0780038113.01 | 0.809133 | 2.199601e-50 | 1.281021e-47 |
| MsG0580024826.01 | MsG0780038117.01 | 0.803486 | 3.406579e-49 | 1.714034e-46 |
| MsG0580024826.01 | MsG0780039875.01 | 0.813278 | 2.775431e-51 | 1.804571e-48 |
| MsG0580024826.01 | MsG0780040505.01 | 0.801430 | 9.036973e-49 | 4.314811e-46 |
| MsG0580024826.01 | MsG0780040516.01 | 0.828954 | 6.743799e-55 | 6.804066e-52 |
| MsG0580024826.01 | MsG0780040679.01 | 0.863878 | 1.817648e-64 | 5.595523e-61 |
| MsG0580024826.01 | MsG0780040875.01 | 0.806258 | 8.977856e-50 | 4.850781e-47 |
| MsG0580024826.01 | MsG0780041485.01 | 0.807535 | 4.821064e-50 | 2.691990e-47 |
| MsG0580024826.01 | MsG0780041777.01 | 0.811666 | 6.246485e-51 | 3.889649e-48 |
| MsG0580024826.01 | MsG0880042329.01 | 0.804862 | 1.761754e-49 | 9.184273e-47 |
| MsG0580024826.01 | MsG0880042843.01 | 0.805093 | 1.576631e-49 | 8.267565e-47 |
| MsG0580024826.01 | MsG0880042967.01 | 0.823637 | 1.244320e-53 | 1.077497e-50 |
| MsG0580024826.01 | MsG0880043001.01 | 0.809928 | 1.484857e-50 | 8.831719e-48 |
| MsG0580024826.01 | MsG0880043489.01 | 0.824680 | 7.079809e-54 | 6.315641e-51 |
| MsG0580024826.01 | MsG0880045782.01 | 0.802531 | 5.367857e-49 | 2.635584e-46 |
| MsG0580024826.01 | MsG0880045827.01 | 0.845261 | 4.533395e-59 | 7.512497e-56 |
| MsG0580024826.01 | MsG0880046329.01 | 0.807369 | 5.228885e-50 | 2.907090e-47 |
| MsG0580024826.01 | MsG0880046560.01 | 0.821078 | 4.888646e-53 | 3.937846e-50 |
| MsG0580024826.01 | MsG0880046586.01 | 0.800080 | 1.704356e-48 | 7.864164e-46 |
| MsG0580024826.01 | MsG0880046642.01 | 0.840876 | 6.674938e-58 | 9.638480e-55 |
| MsG0380015468.01 | MsG0580024826.01 | 0.810572 | 1.078539e-50 | 6.524359e-48 |
| MsG0380015852.01 | MsG0580024826.01 | 0.821026 | 5.024365e-53 | 4.041461e-50 |
| MsG0380015877.01 | MsG0580024826.01 | 0.817913 | 2.577329e-52 | 1.901488e-49 |
| MsG0380015878.01 | MsG0580024826.01 | 0.851732 | 7.328703e-61 | 1.497458e-57 |
| MsG0380015931.01 | MsG0580024826.01 | 0.837415 | 5.267477e-57 | 6.837212e-54 |
| MsG0380015986.01 | MsG0580024826.01 | 0.887711 | 1.122748e-72 | 8.443681e-69 |
| MsG0380017055.01 | MsG0580024826.01 | 0.821861 | 3.223277e-53 | 2.653965e-50 |
| MsG0380017158.01 | MsG0580024826.01 | 0.818935 | 1.511776e-52 | 1.147400e-49 |
| MsG0380017940.01 | MsG0580024826.01 | 0.831324 | 1.780344e-55 | 1.925456e-52 |
| MsG0280006583.01 | MsG0580024826.01 | 0.845063 | 5.129209e-59 | 8.445907e-56 |
| MsG0280006586.01 | MsG0580024826.01 | 0.839574 | 1.460691e-57 | 2.025509e-54 |
| MsG0280006781.01 | MsG0580024826.01 | 0.828154 | 1.052516e-54 | 1.037580e-51 |
| MsG0280007048.01 | MsG0580024826.01 | 0.814254 | 1.691825e-51 | 1.129551e-48 |
| MsG0280007481.01 | MsG0580024826.01 | 0.877804 | 4.684583e-69 | 2.387552e-65 |
| MsG0280008039.01 | MsG0580024826.01 | 0.814005 | 1.920430e-51 | 1.273541e-48 |
| MsG0280008220.01 | MsG0580024826.01 | 0.843458 | 1.384109e-58 | 2.166951e-55 |
| MsG0280008270.01 | MsG0580024826.01 | 0.810097 | 1.365651e-50 | 8.158581e-48 |
| MsG0280009747.01 | MsG0580024826.01 | 0.805090 | 1.578631e-49 | 8.277469e-47 |
| MsG0280010459.01 | MsG0580024826.01 | 0.828941 | 6.796100e-55 | 6.854099e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024826.01.T01 | MTR_5g017470 | 93.750 | 288 | 17 | 1 | 1 | 287 | 1 | 288 | 0.0 | 541 |
| MsG0580024826.01.T01 | MTR_5g010680 | 44.981 | 269 | 120 | 7 | 2 | 252 | 17 | 275 | 1.46e-63 | 204 |
| MsG0580024826.01.T01 | MTR_3g101870 | 47.248 | 218 | 85 | 4 | 2 | 193 | 17 | 230 | 2.97e-56 | 186 |
| MsG0580024826.01.T01 | MTR_1g100777 | 45.455 | 209 | 76 | 3 | 2 | 194 | 11 | 197 | 6.15e-52 | 172 |
| MsG0580024826.01.T01 | MTR_0020s0020 | 44.495 | 218 | 83 | 2 | 2 | 194 | 26 | 230 | 2.20e-51 | 172 |
| MsG0580024826.01.T01 | MTR_5g089170 | 40.164 | 244 | 117 | 6 | 2 | 235 | 18 | 242 | 1.73e-48 | 162 |
| MsG0580024826.01.T01 | MTR_7g091370 | 43.850 | 187 | 81 | 1 | 3 | 189 | 16 | 178 | 5.22e-48 | 160 |
| MsG0580024826.01.T01 | MTR_5g029680 | 46.237 | 186 | 64 | 3 | 1 | 181 | 24 | 178 | 3.00e-44 | 157 |
| MsG0580024826.01.T01 | MTR_7g095680 | 69.474 | 95 | 29 | 0 | 6 | 100 | 46 | 140 | 1.36e-43 | 152 |
| MsG0580024826.01.T01 | MTR_6g043060 | 58.407 | 113 | 44 | 1 | 8 | 117 | 21 | 133 | 1.33e-42 | 149 |
| MsG0580024826.01.T01 | MTR_8g087540 | 58.716 | 109 | 45 | 0 | 5 | 113 | 8 | 116 | 3.40e-41 | 147 |
| MsG0580024826.01.T01 | MTR_1g071360 | 63.636 | 99 | 36 | 0 | 7 | 105 | 30 | 128 | 4.99e-40 | 142 |
| MsG0580024826.01.T01 | MTR_1g071360 | 63.636 | 99 | 36 | 0 | 7 | 105 | 27 | 125 | 9.71e-40 | 142 |
| MsG0580024826.01.T01 | MTR_4g077970 | 41.500 | 200 | 85 | 4 | 9 | 208 | 12 | 179 | 8.17e-39 | 142 |
| MsG0580024826.01.T01 | MTR_8g083100 | 56.757 | 111 | 45 | 1 | 10 | 117 | 23 | 133 | 1.34e-38 | 141 |
| MsG0580024826.01.T01 | MTR_2g100680 | 62.136 | 103 | 39 | 0 | 7 | 109 | 29 | 131 | 1.45e-38 | 141 |
| MsG0580024826.01.T01 | MTR_1g061170 | 38.208 | 212 | 114 | 4 | 3 | 212 | 43 | 239 | 1.27e-37 | 138 |
| MsG0580024826.01.T01 | MTR_3g104550 | 56.481 | 108 | 45 | 1 | 6 | 113 | 43 | 148 | 1.46e-37 | 137 |
| MsG0580024826.01.T01 | MTR_2g100670 | 54.310 | 116 | 50 | 1 | 7 | 119 | 31 | 146 | 2.15e-37 | 135 |
| MsG0580024826.01.T01 | MTR_2g017890 | 39.894 | 188 | 80 | 4 | 9 | 193 | 15 | 172 | 2.40e-37 | 136 |
| MsG0580024826.01.T01 | MTR_1g102860 | 35.784 | 204 | 117 | 3 | 5 | 208 | 36 | 225 | 4.50e-37 | 134 |
| MsG0580024826.01.T01 | MTR_6g086805 | 58.824 | 102 | 42 | 0 | 1 | 102 | 3 | 104 | 8.59e-37 | 134 |
| MsG0580024826.01.T01 | MTR_2g100670 | 53.846 | 117 | 51 | 1 | 6 | 119 | 138 | 254 | 1.59e-36 | 135 |
| MsG0580024826.01.T01 | MTR_4g088900 | 36.139 | 202 | 103 | 5 | 6 | 203 | 30 | 209 | 4.55e-35 | 126 |
| MsG0580024826.01.T01 | MTR_8g105780 | 44.382 | 178 | 65 | 5 | 8 | 181 | 21 | 168 | 2.72e-34 | 128 |
| MsG0580024826.01.T01 | MTR_2g085115 | 55.752 | 113 | 31 | 5 | 70 | 179 | 39 | 135 | 9.24e-25 | 97.1 |
| MsG0580024826.01.T01 | MTR_5g047190 | 45.361 | 97 | 46 | 3 | 17 | 106 | 1 | 97 | 5.39e-19 | 80.5 |
| MsG0580024826.01.T01 | MTR_4g045757 | 60.345 | 58 | 23 | 0 | 9 | 66 | 14 | 71 | 3.41e-18 | 77.8 |
| MsG0580024826.01.T01 | MTR_3g091000 | 61.538 | 52 | 19 | 1 | 154 | 204 | 27 | 78 | 2.76e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024826.01.T01 | AT4G36990 | 50.168 | 297 | 118 | 7 | 2 | 287 | 7 | 284 | 3.46e-82 | 249 |
| MsG0580024826.01.T01 | AT5G62020 | 49.756 | 205 | 97 | 3 | 2 | 202 | 16 | 218 | 1.17e-55 | 182 |
| MsG0580024826.01.T01 | AT4G11660 | 42.537 | 268 | 117 | 7 | 2 | 233 | 52 | 318 | 3.81e-55 | 183 |
| MsG0580024826.01.T01 | AT1G46264 | 44.444 | 216 | 91 | 5 | 4 | 197 | 29 | 237 | 9.74e-54 | 178 |
| MsG0580024826.01.T01 | AT2G41690 | 45.989 | 187 | 89 | 3 | 7 | 190 | 38 | 215 | 3.30e-48 | 161 |
| MsG0580024826.01.T01 | AT1G32330 | 48.066 | 181 | 60 | 3 | 6 | 181 | 34 | 185 | 6.03e-47 | 164 |
| MsG0580024826.01.T01 | AT1G32330 | 48.066 | 181 | 60 | 3 | 6 | 181 | 34 | 185 | 7.13e-47 | 164 |
| MsG0580024826.01.T01 | AT4G17750 | 69.388 | 98 | 30 | 0 | 5 | 102 | 48 | 145 | 3.03e-44 | 157 |
| MsG0580024826.01.T01 | AT3G22830 | 38.318 | 214 | 124 | 3 | 5 | 217 | 57 | 263 | 4.00e-42 | 149 |
| MsG0580024826.01.T01 | AT2G26150 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 4.12e-42 | 148 |
| MsG0580024826.01.T01 | AT2G26150 | 40.306 | 196 | 93 | 2 | 5 | 194 | 40 | 217 | 4.12e-42 | 148 |
| MsG0580024826.01.T01 | AT4G13980 | 62.000 | 100 | 38 | 0 | 10 | 109 | 24 | 123 | 6.10e-41 | 147 |
| MsG0580024826.01.T01 | AT3G02990 | 40.234 | 256 | 114 | 8 | 5 | 258 | 19 | 237 | 8.32e-41 | 147 |
| MsG0580024826.01.T01 | AT3G24520 | 38.426 | 216 | 83 | 4 | 8 | 216 | 16 | 188 | 1.30e-39 | 141 |
| MsG0580024826.01.T01 | AT5G16820 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.12e-39 | 144 |
| MsG0580024826.01.T01 | AT5G16820 | 69.565 | 92 | 28 | 0 | 9 | 100 | 27 | 118 | 2.12e-39 | 144 |
| MsG0580024826.01.T01 | AT5G43840 | 56.881 | 109 | 47 | 0 | 5 | 113 | 15 | 123 | 1.01e-38 | 137 |
| MsG0580024826.01.T01 | AT3G51910 | 58.654 | 104 | 42 | 1 | 6 | 109 | 26 | 128 | 3.88e-38 | 135 |
| MsG0580024826.01.T01 | AT5G03720 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 4.42e-38 | 139 |
| MsG0580024826.01.T01 | AT5G03720 | 42.246 | 187 | 82 | 3 | 9 | 189 | 55 | 221 | 4.42e-38 | 139 |
| MsG0580024826.01.T01 | AT5G54070 | 60.870 | 92 | 36 | 0 | 8 | 99 | 70 | 161 | 9.84e-37 | 134 |
| MsG0580024826.01.T01 | AT3G63350 | 57.732 | 97 | 41 | 0 | 3 | 99 | 22 | 118 | 5.95e-35 | 127 |
| MsG0580024826.01.T01 | AT4G18880 | 55.652 | 115 | 51 | 0 | 5 | 119 | 11 | 125 | 2.16e-33 | 126 |
| MsG0580024826.01.T01 | AT1G67970 | 57.273 | 110 | 44 | 2 | 8 | 116 | 18 | 125 | 2.46e-33 | 125 |
| MsG0580024826.01.T01 | AT5G45710 | 41.146 | 192 | 77 | 3 | 5 | 193 | 9 | 167 | 6.95e-33 | 124 |
| MsG0580024826.01.T01 | AT5G45710 | 41.146 | 192 | 77 | 3 | 5 | 193 | 9 | 167 | 6.95e-33 | 124 |
| MsG0580024826.01.T01 | AT4G18870 | 44.211 | 95 | 53 | 0 | 2 | 96 | 139 | 233 | 2.55e-22 | 94.4 |
| MsG0580024826.01.T01 | AT4G18870 | 45.745 | 94 | 46 | 3 | 5 | 96 | 9 | 99 | 5.71e-20 | 87.8 |
| MsG0580024826.01.T01 | AT1G77570 | 40.909 | 88 | 47 | 3 | 10 | 93 | 27 | 113 | 1.13e-13 | 67.4 |
Find 81 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTCGTTTCTTTCTTTC+TGG | 0.051003 | 5:+10418003 | MsG0580024826.01.T01:five_prime_UTR |
| CCACATCTAAGAAATTAATT+TGG | 0.180721 | 5:-10417929 | None:intergenic |
| AGAATCAACGTCACTTATTA+AGG | 0.213944 | 5:+10417789 | MsG0580024826.01.T01:five_prime_UTR |
| TGGTAGTATATTGGTGATTA+TGG | 0.222330 | 5:+10420745 | MsG0580024826.01.T01:three_prime_UTR |
| TAATTGTAATCTAGGTAATA+TGG | 0.238356 | 5:+10420583 | MsG0580024826.01.T01:three_prime_UTR |
| GAAAGCTTGTGCCAGATAAA+TGG | 0.251473 | 5:+10419754 | MsG0580024826.01.T01:CDS |
| ATATTCTCCTTCAATATGTT+TGG | 0.284451 | 5:-10417856 | None:intergenic |
| TTAGATGTGGCTTAAGCTAA+TGG | 0.287412 | 5:+10417942 | MsG0580024826.01.T01:five_prime_UTR |
| TTTGCAAATTCCCATTTATC+TGG | 0.289664 | 5:-10419765 | None:intergenic |
| TTGTTGTGCTTAAAATATTT+AGG | 0.304096 | 5:-10418364 | None:intergenic |
| CCATGATGATAACTAATTAC+TGG | 0.347869 | 5:-10420495 | None:intergenic |
| GTTTGAAATTGTTTGGTGTT+TGG | 0.347895 | 5:+10420222 | MsG0580024826.01.T01:CDS |
| GGATCCTGCTCCGTCGTTGC+CGG | 0.352068 | 5:-10419916 | None:intergenic |
| ATTTATCTGGCACAAGCTTT+CGG | 0.357484 | 5:-10419752 | None:intergenic |
| CCGTCGTTGCCGGAGTTTGA+TGG | 0.360239 | 5:-10419906 | None:intergenic |
| CGAAACCTTGAGTTGTGAAT+TGG | 0.361410 | 5:+10420046 | MsG0580024826.01.T01:CDS |
| CACATCTAAGAAATTAATTT+GGG | 0.362304 | 5:-10417928 | None:intergenic |
| TATTCTCCTTCAATATGTTT+GGG | 0.365623 | 5:-10417855 | None:intergenic |
| TATTAAGGTTGGAACATGTT+TGG | 0.383001 | 5:+10417804 | MsG0580024826.01.T01:five_prime_UTR |
| CGTGTGGAACCGGTTTCATT+TGG | 0.394345 | 5:+10417731 | MsG0580024826.01.T01:five_prime_UTR |
| GTTGTTGTTTCCACTGATCC+AGG | 0.401148 | 5:-10419969 | None:intergenic |
| ATTATGCGATCGATTTGATC+TGG | 0.408543 | 5:-10420131 | None:intergenic |
| TGTTATCATGTTGTCTGGTT+TGG | 0.415002 | 5:+10420725 | MsG0580024826.01.T01:three_prime_UTR |
| AGAGATTGTTTGAAATTGTT+TGG | 0.415249 | 5:+10420215 | MsG0580024826.01.T01:CDS |
| GTTGTTGTTATCATGTTGTC+TGG | 0.416787 | 5:+10420720 | MsG0580024826.01.T01:three_prime_UTR |
| CTTGAACACATGAAAGAAAC+AGG | 0.422879 | 5:-10420543 | None:intergenic |
| TGTCTGGTTTGGTAGTATAT+TGG | 0.424074 | 5:+10420736 | MsG0580024826.01.T01:three_prime_UTR |
| GAGGCCCACCATAGCTCAAT+TGG | 0.429636 | 5:-10420301 | None:intergenic |
| CATTATTGACCAAATGAAAC+CGG | 0.432836 | 5:-10417740 | None:intergenic |
| TCTATTGGTACGTGTGGAAC+CGG | 0.437566 | 5:+10417721 | None:intergenic |
| TATTAGTTGAAGGGTTGATC+GGG | 0.441260 | 5:+10418189 | MsG0580024826.01.T01:five_prime_UTR |
| TGAGTTGGAGGAAGAGGTTG+AGG | 0.450915 | 5:-10419940 | None:intergenic |
| AAAGCTTGTGCCAGATAAAT+GGG | 0.453955 | 5:+10419755 | MsG0580024826.01.T01:CDS |
| CCAAATTAATTTCTTAGATG+TGG | 0.468547 | 5:+10417929 | MsG0580024826.01.T01:five_prime_UTR |
| CTCGATAAGTTAACACATTG+AGG | 0.469755 | 5:-10419996 | None:intergenic |
| AATGTCGCAGCGGTCGGCGC+CGG | 0.469760 | 5:+10418216 | MsG0580024826.01.T01:exon |
| TAATTAGTTATCATCATGGT+TGG | 0.472302 | 5:+10420499 | MsG0580024826.01.T01:three_prime_UTR |
| TCAACGTCACTTATTAAGGT+TGG | 0.484905 | 5:+10417793 | MsG0580024826.01.T01:five_prime_UTR |
| TGGAGAGTTGTCATTTATGC+TGG | 0.486742 | 5:-10419886 | None:intergenic |
| ACAACCGTCGTCACAACCCC+TGG | 0.491280 | 5:+10419851 | MsG0580024826.01.T01:CDS |
| ATATTAGTTGAAGGGTTGAT+CGG | 0.494004 | 5:+10418188 | MsG0580024826.01.T01:five_prime_UTR |
| GCCTCGCCCAAACATATTGA+AGG | 0.497174 | 5:+10417849 | MsG0580024826.01.T01:five_prime_UTR |
| ATATACTAATAGTCAATGTA+TGG | 0.499722 | 5:+10420639 | MsG0580024826.01.T01:three_prime_UTR |
| TCTAAAAGACAATTTAAATG+TGG | 0.501767 | 5:+10420106 | MsG0580024826.01.T01:CDS |
| CTAAAAGACAATTTAAATGT+GGG | 0.505450 | 5:+10420107 | MsG0580024826.01.T01:CDS |
| ATCTGAAATGTGGCAAGCTA+AGG | 0.505904 | 5:-10420414 | None:intergenic |
| CCAGTAATTAGTTATCATCA+TGG | 0.508360 | 5:+10420495 | MsG0580024826.01.T01:three_prime_UTR |
| TATCGGTGAGGAGGTGTTTG+TGG | 0.509612 | 5:-10419806 | None:intergenic |
| AACTCCGGCAACGACGGAGC+AGG | 0.525429 | 5:+10419912 | MsG0580024826.01.T01:CDS |
| GTTGGAGGAAGAGGTTGAGG+TGG | 0.526221 | 5:-10419937 | None:intergenic |
| GAAATAAGCAATAAGAAGAG+AGG | 0.527898 | 5:+10420269 | MsG0580024826.01.T01:CDS |
| TTGTTGTTTCCACTGATCCA+GGG | 0.529235 | 5:-10419968 | None:intergenic |
| TGGTGGGCCTCGAGCTAAAG+TGG | 0.533968 | 5:+10420313 | MsG0580024826.01.T01:CDS |
| AATTAGTTATCATCATGGTT+GGG | 0.534493 | 5:+10420500 | MsG0580024826.01.T01:three_prime_UTR |
| TCCTTCAATATGTTTGGGCG+AGG | 0.542690 | 5:-10417850 | None:intergenic |
| ACGTGCCAATTCACAACTCA+AGG | 0.543571 | 5:-10420051 | None:intergenic |
| CGACGGATGATGTGATATCA+TGG | 0.550146 | 5:+10418281 | MsG0580024826.01.T01:CDS |
| AAAGAAACAATGCGAAGAGT+TGG | 0.565353 | 5:+10420076 | MsG0580024826.01.T01:CDS |
| GCTTCCAGGGGTTGTGACGA+CGG | 0.568930 | 5:-10419855 | None:intergenic |
| TTGTGACGACGGTTGTGAGA+TGG | 0.569926 | 5:-10419844 | None:intergenic |
| GACAACTCTCCATCAAACTC+CGG | 0.573360 | 5:+10419897 | MsG0580024826.01.T01:CDS |
| CCATCAAACTCCGGCAACGA+CGG | 0.576121 | 5:+10419906 | MsG0580024826.01.T01:CDS |
| GTTGTGAACATGATGAAAAG+TGG | 0.578148 | 5:+10420368 | MsG0580024826.01.T01:CDS |
| TTTGTTGAAGACGTATCAGA+TGG | 0.581317 | 5:+10418246 | MsG0580024826.01.T01:CDS |
| CATCTATCTATTGGTACGTG+TGG | 0.586686 | 5:+10417715 | None:intergenic |
| GTTGGTGAAGGTGAAGAAAG+TGG | 0.588342 | 5:+10420191 | MsG0580024826.01.T01:CDS |
| GTTCAAAATGCGGTTGGTGA+AGG | 0.597542 | 5:+10420179 | MsG0580024826.01.T01:CDS |
| TTGTTACCCACTTTAGCTCG+AGG | 0.613620 | 5:-10420320 | None:intergenic |
| ATTAGTTGAAGGGTTGATCG+GGG | 0.613667 | 5:+10418190 | MsG0580024826.01.T01:five_prime_UTR |
| GGCGTTTGATATCGGTGAGG+AGG | 0.622756 | 5:-10419815 | None:intergenic |
| GAATCTGTTCAAAATGCGGT+TGG | 0.630106 | 5:+10420173 | MsG0580024826.01.T01:CDS |
| GTGATATCATGGAGTGAGAG+TGG | 0.634834 | 5:+10418292 | MsG0580024826.01.T01:CDS |
| GAAGACCAATTGAGCTATGG+TGG | 0.636764 | 5:+10420296 | MsG0580024826.01.T01:CDS |
| GGTGGGCCTCGAGCTAAAGT+GGG | 0.645793 | 5:+10420314 | MsG0580024826.01.T01:CDS |
| TGTGAAGACCAATTGAGCTA+TGG | 0.646584 | 5:+10420293 | MsG0580024826.01.T01:CDS |
| GTTGAAGACGTATCAGATGG+TGG | 0.648048 | 5:+10418249 | MsG0580024826.01.T01:CDS |
| TTGTGAATCTGTTCAAAATG+CGG | 0.658508 | 5:+10420169 | MsG0580024826.01.T01:CDS |
| GAACATGATGAAAAGTGGCA+AGG | 0.659767 | 5:+10420373 | MsG0580024826.01.T01:CDS |
| GCAAACGAAAATTTCAAACG+AGG | 0.682155 | 5:+10419783 | MsG0580024826.01.T01:CDS |
| TGCGGCGTTTGATATCGGTG+AGG | 0.683931 | 5:-10419818 | None:intergenic |
| AAGACCAATTGAGCTATGGT+GGG | 0.693450 | 5:+10420297 | MsG0580024826.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTATTTTTATTTTAA+TGG | + | Chr5:10418735-10418754 | MsG0580024826.01.T01:intron | 0.0% |
| !!! | AATTATTTTTTAGCAATTTT+TGG | + | Chr5:10418522-10418541 | MsG0580024826.01.T01:intron | 10.0% |
| !!! | ATTATTTTTTAGCAATTTTT+GGG | + | Chr5:10418523-10418542 | MsG0580024826.01.T01:intron | 10.0% |
| !!! | TATTTTAACAAATAGTAAAT+AGG | - | Chr5:10418895-10418914 | None:intergenic | 10.0% |
| !! | AAATTATAATACACTTTCTT+AGG | - | Chr5:10419199-10419218 | None:intergenic | 15.0% |
| !! | AAATTATCCTTATTAACTAT+TGG | + | Chr5:10419431-10419450 | MsG0580024826.01.T01:intron | 15.0% |
| !! | AACTAGTTAGAAAAAATAAA+GGG | + | Chr5:10420791-10420810 | MsG0580024826.01.T01:three_prime_UTR | 15.0% |
| !! | AATTATAATACACTTTCTTA+GGG | - | Chr5:10419198-10419217 | None:intergenic | 15.0% |
| !! | AGAAAAATATATTAGTTGAA+GGG | + | Chr5:10418180-10418199 | MsG0580024826.01.T01:five_prime_UTR | 15.0% |
| !! | CTTAAAATAAAAATTTGTCT+AGG | - | Chr5:10418085-10418104 | None:intergenic | 15.0% |
| !! | TAGAAAAATATATTAGTTGA+AGG | + | Chr5:10418179-10418198 | MsG0580024826.01.T01:five_prime_UTR | 15.0% |
| !! | TCATTGGAAAATTAAAAAAA+AGG | - | Chr5:10418493-10418512 | None:intergenic | 15.0% |
| !!! | AATAATTTGTATTTTCTCAT+TGG | - | Chr5:10418509-10418528 | None:intergenic | 15.0% |
| !!! | TAAATTTTATATCTGAAATG+TGG | - | Chr5:10420427-10420446 | None:intergenic | 15.0% |
| !!! | TAGTTTTAAAAGTAATACTT+TGG | + | Chr5:10419455-10419474 | MsG0580024826.01.T01:intron | 15.0% |
| !!! | TGTTCAAATATTTTGATTTT+AGG | + | Chr5:10418777-10418796 | MsG0580024826.01.T01:intron | 15.0% |
| !!! | TTATTTTTTAGCAATTTTTG+GGG | + | Chr5:10418524-10418543 | MsG0580024826.01.T01:intron | 15.0% |
| !!! | TTTTGATTTAATTGTAATCT+AGG | + | Chr5:10420575-10420594 | MsG0580024826.01.T01:three_prime_UTR | 15.0% |
| !! | AAACTAACCAATAGTTAATA+AGG | - | Chr5:10419441-10419460 | None:intergenic | 20.0% |
| !! | AATGATTAAAAGAAAGAGAA+TGG | + | Chr5:10419398-10419417 | MsG0580024826.01.T01:intron | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | + | Chr5:10419518-10419537 | MsG0580024826.01.T01:intron | 20.0% |
| !! | ATATACTAATAGTCAATGTA+TGG | + | Chr5:10420639-10420658 | MsG0580024826.01.T01:three_prime_UTR | 20.0% |
| !! | CAACTAGTTAGAAAAAATAA+AGG | + | Chr5:10420790-10420809 | MsG0580024826.01.T01:three_prime_UTR | 20.0% |
| !! | CACATCTAAGAAATTAATTT+GGG | - | Chr5:10417931-10417950 | None:intergenic | 20.0% |
| !! | CTAAAAGACAATTTAAATGT+GGG | + | Chr5:10420107-10420126 | MsG0580024826.01.T01:CDS | 20.0% |
| !! | TAATTGTAATCTAGGTAATA+TGG | + | Chr5:10420583-10420602 | MsG0580024826.01.T01:three_prime_UTR | 20.0% |
| !! | TCTAAAAGACAATTTAAATG+TGG | + | Chr5:10420106-10420125 | MsG0580024826.01.T01:CDS | 20.0% |
| !! | TTGTTGTGCTTAAAATATTT+AGG | - | Chr5:10418367-10418386 | None:intergenic | 20.0% |
| !!! | AAAACTTTCCTATTTTTGTA+TGG | + | Chr5:10417886-10417905 | MsG0580024826.01.T01:five_prime_UTR | 20.0% |
| !!! | AAACTTTCCTATTTTTGTAT+GGG | + | Chr5:10417887-10417906 | MsG0580024826.01.T01:five_prime_UTR | 20.0% |
| ! | AATTAGTTATCATCATGGTT+GGG | + | Chr5:10420500-10420519 | MsG0580024826.01.T01:three_prime_UTR | 25.0% |
| ! | ACAAACAAGCAAGTATAAAA+TGG | + | Chr5:10418589-10418608 | MsG0580024826.01.T01:intron | 25.0% |
| ! | ATAATTCCCCATACAAAAAT+AGG | - | Chr5:10417897-10417916 | None:intergenic | 25.0% |
| ! | ATATTCTCCTTCAATATGTT+TGG | - | Chr5:10417859-10417878 | None:intergenic | 25.0% |
| ! | CATGTTCATGAAAAACTAAA+AGG | - | Chr5:10418447-10418466 | None:intergenic | 25.0% |
| ! | CCAAATTAATTTCTTAGATG+TGG | + | Chr5:10417929-10417948 | MsG0580024826.01.T01:five_prime_UTR | 25.0% |
| ! | CCACATCTAAGAAATTAATT+TGG | - | Chr5:10417932-10417951 | None:intergenic | 25.0% |
| ! | TAATTAGTTATCATCATGGT+TGG | + | Chr5:10420499-10420518 | MsG0580024826.01.T01:three_prime_UTR | 25.0% |
| ! | TATTCTCCTTCAATATGTTT+GGG | - | Chr5:10417858-10417877 | None:intergenic | 25.0% |
| !! | AGAGATTGTTTGAAATTGTT+TGG | + | Chr5:10420215-10420234 | MsG0580024826.01.T01:CDS | 25.0% |
| !! | CTACCAAGTAAATTCATTTT+CGG | - | Chr5:10418961-10418980 | None:intergenic | 25.0% |
| !! | GAATGAACTAAATTTTCTGA+AGG | - | Chr5:10417988-10418007 | None:intergenic | 25.0% |
| !!! | AACTTTCCTATTTTTGTATG+GGG | + | Chr5:10417888-10417907 | MsG0580024826.01.T01:five_prime_UTR | 25.0% |
| !!! | GATGATTTACTTTTAGTGTT+CGG | + | Chr5:10419296-10419315 | MsG0580024826.01.T01:intron | 25.0% |
| !!! | TAGGTTTTATCTTAACACTT+TGG | + | Chr5:10419683-10419702 | MsG0580024826.01.T01:intron | 25.0% |
| !!! | TCTTTCTGGTTTTTATTGTT+GGG | + | Chr5:10418017-10418036 | MsG0580024826.01.T01:five_prime_UTR | 25.0% |
| !!! | TTCTTTCTGGTTTTTATTGT+TGG | + | Chr5:10418016-10418035 | MsG0580024826.01.T01:five_prime_UTR | 25.0% |
| ACACCGAAAATGAATTTACT+TGG | + | Chr5:10418955-10418974 | MsG0580024826.01.T01:intron | 30.0% | |
| AGAAAACGTGCTAATATTTG+AGG | - | Chr5:10419659-10419678 | None:intergenic | 30.0% | |
| AGAATCAACGTCACTTATTA+AGG | + | Chr5:10417789-10417808 | MsG0580024826.01.T01:five_prime_UTR | 30.0% | |
| ATGAAAAACTAAAAGGAGAG+AGG | - | Chr5:10418440-10418459 | None:intergenic | 30.0% | |
| CAATACTTTCCTTCCAATTA+GGG | - | Chr5:10418867-10418886 | None:intergenic | 30.0% | |
| CACATCTTTACAATTATGCA+CGG | - | Chr5:10419267-10419286 | None:intergenic | 30.0% | |
| CATTATTGACCAAATGAAAC+CGG | - | Chr5:10417743-10417762 | None:intergenic | 30.0% | |
| CCAGTAATTAGTTATCATCA+TGG | + | Chr5:10420495-10420514 | MsG0580024826.01.T01:three_prime_UTR | 30.0% | |
| CCATGATGATAACTAATTAC+TGG | - | Chr5:10420498-10420517 | None:intergenic | 30.0% | |
| GAAAACGTGCTAATATTTGA+GGG | - | Chr5:10419658-10419677 | None:intergenic | 30.0% | |
| GAAATAAGCAATAAGAAGAG+AGG | + | Chr5:10420269-10420288 | MsG0580024826.01.T01:CDS | 30.0% | |
| TATTAAGGTTGGAACATGTT+TGG | + | Chr5:10417804-10417823 | MsG0580024826.01.T01:five_prime_UTR | 30.0% | |
| TGAAAAACTAAAAGGAGAGA+GGG | - | Chr5:10418439-10418458 | None:intergenic | 30.0% | |
| TGAGAAAATGCTAATTACCA+TGG | + | Chr5:10419709-10419728 | MsG0580024826.01.T01:intron | 30.0% | |
| TGATACGTCTTCAACAAAAA+CGG | - | Chr5:10418244-10418263 | None:intergenic | 30.0% | |
| TTGGTAGATCACAATGAATT+AGG | + | Chr5:10418974-10418993 | MsG0580024826.01.T01:intron | 30.0% | |
| TTGTGAATCTGTTCAAAATG+CGG | + | Chr5:10420169-10420188 | MsG0580024826.01.T01:CDS | 30.0% | |
| TTTGCAAATTCCCATTTATC+TGG | - | Chr5:10419768-10419787 | None:intergenic | 30.0% | |
| ! | AGTGTTCAATGGTTTACTTT+TGG | + | Chr5:10419619-10419638 | MsG0580024826.01.T01:intron | 30.0% |
| ! | ATATTAGTTGAAGGGTTGAT+CGG | + | Chr5:10418188-10418207 | MsG0580024826.01.T01:five_prime_UTR | 30.0% |
| ! | ATTAGCACGTTTTCTTTTCT+AGG | + | Chr5:10419664-10419683 | MsG0580024826.01.T01:intron | 30.0% |
| ! | TGGTAGTATATTGGTGATTA+TGG | + | Chr5:10420745-10420764 | MsG0580024826.01.T01:three_prime_UTR | 30.0% |
| ! | TGGTTTTTATTGTTGGGATT+GGG | + | Chr5:10418023-10418042 | MsG0580024826.01.T01:five_prime_UTR | 30.0% |
| !! | AAACGACACTCATTTTGAAA+CGG | - | Chr5:10419349-10419368 | None:intergenic | 30.0% |
| !! | AAGCGACATTCATTTTGAAA+CGG | + | Chr5:10419548-10419567 | MsG0580024826.01.T01:intron | 30.0% |
| !! | ATTTACTTTTAGTGTTCGGA+TGG | + | Chr5:10419300-10419319 | MsG0580024826.01.T01:intron | 30.0% |
| !! | GTTTGAAATTGTTTGGTGTT+TGG | + | Chr5:10420222-10420241 | MsG0580024826.01.T01:CDS | 30.0% |
| !!! | AATTTTTGGGGTTCATAACA+AGG | + | Chr5:10418536-10418555 | MsG0580024826.01.T01:intron | 30.0% |
| !!! | TTCAAAATGAGTGTCGTTTT+AGG | + | Chr5:10419350-10419369 | MsG0580024826.01.T01:intron | 30.0% |
| AAAGAAACAATGCGAAGAGT+TGG | + | Chr5:10420076-10420095 | MsG0580024826.01.T01:CDS | 35.0% | |
| AAAGCTTGTGCCAGATAAAT+GGG | + | Chr5:10419755-10419774 | MsG0580024826.01.T01:CDS | 35.0% | |
| AGTAGAATACCCTAATTGGA+AGG | + | Chr5:10418855-10418874 | MsG0580024826.01.T01:intron | 35.0% | |
| ATTTATCTGGCACAAGCTTT+CGG | - | Chr5:10419755-10419774 | None:intergenic | 35.0% | |
| CATTCTCGTTTCTTTCTTTC+TGG | + | Chr5:10418003-10418022 | MsG0580024826.01.T01:five_prime_UTR | 35.0% | |
| CCAATACTTTCCTTCCAATT+AGG | - | Chr5:10418868-10418887 | None:intergenic | 35.0% | |
| CTCGATAAGTTAACACATTG+AGG | - | Chr5:10419999-10420018 | None:intergenic | 35.0% | |
| CTTGAACACATGAAAGAAAC+AGG | - | Chr5:10420546-10420565 | None:intergenic | 35.0% | |
| GCAAACGAAAATTTCAAACG+AGG | + | Chr5:10419783-10419802 | MsG0580024826.01.T01:CDS | 35.0% | |
| GGACATCGACGTTAAAAAAT+TGG | - | Chr5:10419246-10419265 | None:intergenic | 35.0% | |
| GTTGTGAACATGATGAAAAG+TGG | + | Chr5:10420368-10420387 | MsG0580024826.01.T01:CDS | 35.0% | |
| TCAACGTCACTTATTAAGGT+TGG | + | Chr5:10417793-10417812 | MsG0580024826.01.T01:five_prime_UTR | 35.0% | |
| TGTTATCATGTTGTCTGGTT+TGG | + | Chr5:10420725-10420744 | MsG0580024826.01.T01:three_prime_UTR | 35.0% | |
| TTAGATGTGGCTTAAGCTAA+TGG | + | Chr5:10417942-10417961 | MsG0580024826.01.T01:five_prime_UTR | 35.0% | |
| TTTGTTGAAGACGTATCAGA+TGG | + | Chr5:10418246-10418265 | MsG0580024826.01.T01:CDS | 35.0% | |
| ! | ACCATGGTTTTTGAATTTGC+AGG | + | Chr5:10419725-10419744 | MsG0580024826.01.T01:intron | 35.0% |
| ! | CCAATTAGGGTATTCTACTT+CGG | - | Chr5:10418854-10418873 | None:intergenic | 35.0% |
| ! | CCATGGTTTTTGAATTTGCA+GGG | + | Chr5:10419726-10419745 | MsG0580024826.01.T01:intron | 35.0% |
| ! | CCTAATTGGAAGGAAAGTAT+TGG | + | Chr5:10418865-10418884 | MsG0580024826.01.T01:intron | 35.0% |
| ! | GGTTTTCAATCTTTTCGTGT+AGG | - | Chr5:10418826-10418845 | None:intergenic | 35.0% |
| ! | GTAGTGTGCAGAGTATTAAT+TGG | + | Chr5:10419480-10419499 | MsG0580024826.01.T01:intron | 35.0% |
| ! | GTTGTTGTTATCATGTTGTC+TGG | + | Chr5:10420720-10420739 | MsG0580024826.01.T01:three_prime_UTR | 35.0% |
| ! | TATTAGTTGAAGGGTTGATC+GGG | + | Chr5:10418189-10418208 | MsG0580024826.01.T01:five_prime_UTR | 35.0% |
| ! | TGTGCAGAGTATTAATTGGA+GGG | + | Chr5:10419484-10419503 | MsG0580024826.01.T01:intron | 35.0% |
| !! | ATTATGCGATCGATTTGATC+TGG | - | Chr5:10420134-10420153 | None:intergenic | 35.0% |
| !! | CTGGTTTTTATTGTTGGGAT+TGG | + | Chr5:10418022-10418041 | MsG0580024826.01.T01:five_prime_UTR | 35.0% |
| !! | TGTCTGGTTTGGTAGTATAT+TGG | + | Chr5:10420736-10420755 | MsG0580024826.01.T01:three_prime_UTR | 35.0% |
| !!! | GAAACATGCTGATTTTGCAA+GGG | + | Chr5:10418333-10418352 | MsG0580024826.01.T01:CDS | 35.0% |
| !!! | GACATTCATTTTGAAACGGA+GGG | + | Chr5:10419588-10419607 | MsG0580024826.01.T01:intron | 35.0% |
| AAGACCAATTGAGCTATGGT+GGG | + | Chr5:10420297-10420316 | MsG0580024826.01.T01:CDS | 40.0% | |
| CCCTGCAAATTCAAAAACCA+TGG | - | Chr5:10419729-10419748 | None:intergenic | 40.0% | |
| CCGAAGTAGAATACCCTAAT+TGG | + | Chr5:10418851-10418870 | MsG0580024826.01.T01:intron | 40.0% | |
| GAAAGCTTGTGCCAGATAAA+TGG | + | Chr5:10419754-10419773 | MsG0580024826.01.T01:CDS | 40.0% | |
| GAACATGATGAAAAGTGGCA+AGG | + | Chr5:10420373-10420392 | MsG0580024826.01.T01:CDS | 40.0% | |
| GAATCTGTTCAAAATGCGGT+TGG | + | Chr5:10420173-10420192 | MsG0580024826.01.T01:CDS | 40.0% | |
| TGTGAAGACCAATTGAGCTA+TGG | + | Chr5:10420293-10420312 | MsG0580024826.01.T01:CDS | 40.0% | |
| ! | ATCTGAAATGTGGCAAGCTA+AGG | - | Chr5:10420417-10420436 | None:intergenic | 40.0% |
| ! | ATTAGTTGAAGGGTTGATCG+GGG | + | Chr5:10418190-10418209 | MsG0580024826.01.T01:five_prime_UTR | 40.0% |
| ! | CGAAACCTTGAGTTGTGAAT+TGG | + | Chr5:10420046-10420065 | MsG0580024826.01.T01:CDS | 40.0% |
| ! | GTGTGCAGAGTATTAATTGG+AGG | + | Chr5:10419483-10419502 | MsG0580024826.01.T01:intron | 40.0% |
| ! | TGGAGAGTTGTCATTTATGC+TGG | - | Chr5:10419889-10419908 | None:intergenic | 40.0% |
| !! | GGGAGTACTTTAGTGTTCAA+TGG | + | Chr5:10419608-10419627 | MsG0580024826.01.T01:intron | 40.0% |
| !! | TTGTTGTTTCCACTGATCCA+GGG | - | Chr5:10419971-10419990 | None:intergenic | 40.0% |
| !!! | CGACATTCATTTTGAAACGG+AGG | + | Chr5:10419587-10419606 | MsG0580024826.01.T01:intron | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | - | Chr5:10419345-10419364 | None:intergenic | 40.0% |
| !!! | GGAAACATGCTGATTTTGCA+AGG | + | Chr5:10418332-10418351 | MsG0580024826.01.T01:CDS | 40.0% |
| !!! | GTGGTGAAAGTTTTGTTGTG+TGG | + | Chr5:10418311-10418330 | MsG0580024826.01.T01:CDS | 40.0% |
| !!! | GTTTTTTGAGTTGGAGGAAG+AGG | - | Chr5:10419949-10419968 | None:intergenic | 40.0% |
| !!! | TGATCCAGGGTTTTTTGAGT+TGG | - | Chr5:10419958-10419977 | None:intergenic | 40.0% |
| ACGTGCCAATTCACAACTCA+AGG | - | Chr5:10420054-10420073 | None:intergenic | 45.0% | |
| CGACGGATGATGTGATATCA+TGG | + | Chr5:10418281-10418300 | MsG0580024826.01.T01:CDS | 45.0% | |
| CTCAAAAAACCCTGGATCAG+TGG | + | Chr5:10419959-10419978 | MsG0580024826.01.T01:CDS | 45.0% | |
| GAAGACCAATTGAGCTATGG+TGG | + | Chr5:10420296-10420315 | MsG0580024826.01.T01:CDS | 45.0% | |
| GACAACTCTCCATCAAACTC+CGG | + | Chr5:10419897-10419916 | MsG0580024826.01.T01:CDS | 45.0% | |
| GGGTATTCTACTTCGGTAGA+AGG | - | Chr5:10418847-10418866 | None:intergenic | 45.0% | |
| GTGATATCATGGAGTGAGAG+TGG | + | Chr5:10418292-10418311 | MsG0580024826.01.T01:CDS | 45.0% | |
| GTTGAAGACGTATCAGATGG+TGG | + | Chr5:10418249-10418268 | MsG0580024826.01.T01:CDS | 45.0% | |
| TCCTCCAACTCAAAAAACCC+TGG | + | Chr5:10419951-10419970 | MsG0580024826.01.T01:CDS | 45.0% | |
| TCCTTCAATATGTTTGGGCG+AGG | - | Chr5:10417853-10417872 | None:intergenic | 45.0% | |
| ! | GGTTTTGCGGCGTTTGATAT+CGG | - | Chr5:10419826-10419845 | None:intergenic | 45.0% |
| ! | GTTGGTGAAGGTGAAGAAAG+TGG | + | Chr5:10420191-10420210 | MsG0580024826.01.T01:CDS | 45.0% |
| ! | TTGTTACCCACTTTAGCTCG+AGG | - | Chr5:10420323-10420342 | None:intergenic | 45.0% |
| !! | ACGGTTGTGAGATGGTTTTG+CGG | - | Chr5:10419839-10419858 | None:intergenic | 45.0% |
| !! | GTTCAAAATGCGGTTGGTGA+AGG | + | Chr5:10420179-10420198 | MsG0580024826.01.T01:CDS | 45.0% |
| !! | GTTGTTGTTTCCACTGATCC+AGG | - | Chr5:10419972-10419991 | None:intergenic | 45.0% |
| !!! | CGACACTCATTTTGAAACGG+AGG | - | Chr5:10419346-10419365 | None:intergenic | 45.0% |
| !!! | CTGGTTTTTTCAGCTTCCAG+GGG | - | Chr5:10419870-10419889 | None:intergenic | 45.0% |
| !!! | GATGGTGGATGATTTTGCGA+CGG | + | Chr5:10418264-10418283 | MsG0580024826.01.T01:CDS | 45.0% |
| !!! | GCTGGTTTTTTCAGCTTCCA+GGG | - | Chr5:10419871-10419890 | None:intergenic | 45.0% |
| !!! | TCCAGGGTTTTTTGAGTTGG+AGG | - | Chr5:10419955-10419974 | None:intergenic | 45.0% |
| !!! | TGCTGGTTTTTTCAGCTTCC+AGG | - | Chr5:10419872-10419891 | None:intergenic | 45.0% |
| ATCGGGGAAAAATGTCGCAG+CGG | + | Chr5:10418206-10418225 | MsG0580024826.01.T01:exon | 50.0% | |
| GCCTCGCCCAAACATATTGA+AGG | + | Chr5:10417849-10417868 | MsG0580024826.01.T01:five_prime_UTR | 50.0% | |
| GTCTTCAACAAAAACGGCGC+CGG | - | Chr5:10418238-10418257 | None:intergenic | 50.0% | |
| TTGTGACGACGGTTGTGAGA+TGG | - | Chr5:10419847-10419866 | None:intergenic | 50.0% | |
| ! | CGTGTGGAACCGGTTTCATT+TGG | + | Chr5:10417731-10417750 | MsG0580024826.01.T01:five_prime_UTR | 50.0% |
| ! | TGAGTTGGAGGAAGAGGTTG+AGG | - | Chr5:10419943-10419962 | None:intergenic | 50.0% |
| !! | TATCGGTGAGGAGGTGTTTG+TGG | - | Chr5:10419809-10419828 | None:intergenic | 50.0% |
| CCATCAAACTCCGGCAACGA+CGG | + | Chr5:10419906-10419925 | MsG0580024826.01.T01:CDS | 55.0% | |
| GAGGCCCACCATAGCTCAAT+TGG | - | Chr5:10420304-10420323 | None:intergenic | 55.0% | |
| GGCGTTTGATATCGGTGAGG+AGG | - | Chr5:10419818-10419837 | None:intergenic | 55.0% | |
| GGGAAAAATGTCGCAGCGGT+CGG | + | Chr5:10418210-10418229 | MsG0580024826.01.T01:exon | 55.0% | |
| GTTGGAGGAAGAGGTTGAGG+TGG | - | Chr5:10419940-10419959 | None:intergenic | 55.0% | |
| TGCGGCGTTTGATATCGGTG+AGG | - | Chr5:10419821-10419840 | None:intergenic | 55.0% | |
| ACAACCGTCGTCACAACCCC+TGG | + | Chr5:10419851-10419870 | MsG0580024826.01.T01:CDS | 60.0% | |
| CCGTCGTTGCCGGAGTTTGA+TGG | - | Chr5:10419909-10419928 | None:intergenic | 60.0% | |
| GCTTCCAGGGGTTGTGACGA+CGG | - | Chr5:10419858-10419877 | None:intergenic | 60.0% | |
| GGTGGGCCTCGAGCTAAAGT+GGG | + | Chr5:10420314-10420333 | MsG0580024826.01.T01:CDS | 60.0% | |
| ! | TGGTGGGCCTCGAGCTAAAG+TGG | + | Chr5:10420313-10420332 | MsG0580024826.01.T01:CDS | 60.0% |
| AACTCCGGCAACGACGGAGC+AGG | + | Chr5:10419912-10419931 | MsG0580024826.01.T01:CDS | 65.0% | |
| GGATCCTGCTCCGTCGTTGC+CGG | - | Chr5:10419919-10419938 | None:intergenic | 65.0% | |
| AATGTCGCAGCGGTCGGCGC+CGG | + | Chr5:10418216-10418235 | MsG0580024826.01.T01:exon | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 10417724 | 10420833 | 10417724 | ID=MsG0580024826.01;Name=MsG0580024826.01 |
| Chr5 | mRNA | 10417724 | 10420833 | 10417724 | ID=MsG0580024826.01.T01;Parent=MsG0580024826.01;Name=MsG0580024826.01.T01;_AED=0.41;_eAED=0.41;_QI=493|1|1|1|1|1|2|427|287 |
| Chr5 | exon | 10417724 | 10418420 | 10417724 | ID=MsG0580024826.01.T01:exon:1943;Parent=MsG0580024826.01.T01 |
| Chr5 | exon | 10419747 | 10420833 | 10419747 | ID=MsG0580024826.01.T01:exon:1944;Parent=MsG0580024826.01.T01 |
| Chr5 | five_prime_UTR | 10417724 | 10418216 | 10417724 | ID=MsG0580024826.01.T01:five_prime_utr;Parent=MsG0580024826.01.T01 |
| Chr5 | CDS | 10418217 | 10418420 | 10418217 | ID=MsG0580024826.01.T01:cds;Parent=MsG0580024826.01.T01 |
| Chr5 | CDS | 10419747 | 10420406 | 10419747 | ID=MsG0580024826.01.T01:cds;Parent=MsG0580024826.01.T01 |
| Chr5 | three_prime_UTR | 10420407 | 10420833 | 10420407 | ID=MsG0580024826.01.T01:three_prime_utr;Parent=MsG0580024826.01.T01 |
| Gene Sequence |
| Protein sequence |
