AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013991.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013991.01.T01 MTR_0002s0510 85.494 324 23 1 30 329 1525 1848 0.0 561
MsG0380013991.01.T01 MTR_8g016520 97.714 175 4 0 155 329 7 181 1.94e-123 354
MsG0380013991.01.T01 MTR_4g051120 99.429 175 1 0 155 329 7 181 1.08e-114 361
MsG0380013991.01.T01 MTR_8g016510 96.774 124 4 0 31 154 170 293 9.90e-81 251
MsG0380013991.01.T01 MTR_3g062770 99.194 124 1 0 31 154 453 576 2.25e-80 258
MsG0380013991.01.T01 MTR_3g062790 99.194 124 1 0 31 154 453 576 2.25e-80 258
MsG0380013991.01.T01 MTR_4g051130 94.697 132 7 0 23 154 1497 1628 6.48e-78 259
MsG0380013991.01.T01 MTR_2g080240 95.652 69 3 0 155 223 26 94 4.71e-41 139
MsG0380013991.01.T01 MTR_4g009210 54.887 133 26 1 23 155 100 198 5.91e-36 130
MsG0380013991.01.T01 MTR_4g061800 40.206 97 58 0 53 149 453 549 1.28e-16 81.3
MsG0380013991.01.T01 MTR_4g061700 34.711 121 78 1 30 149 428 548 4.03e-16 80.1
MsG0380013991.01.T01 MTR_4g086290 33.613 119 78 1 35 152 509 627 3.62e-13 70.9
MsG0380013991.01.T01 MTR_4g086290 34.483 116 75 1 35 149 509 624 5.22e-13 70.5
MsG0380013991.01.T01 MTR_5g023020 33.962 106 70 0 44 149 443 548 1.34e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013991.01.T01 ATCG00170 96.000 175 7 0 155 329 3 177 8.36e-110 348
MsG0380013991.01.T01 ATCG00180 93.548 124 8 0 31 154 425 548 4.57e-76 246
MsG0380013991.01.T01 AT5G60040 34.109 129 82 1 21 149 428 553 3.09e-16 80.5
MsG0380013991.01.T01 AT5G60040 34.109 129 82 1 21 149 438 563 3.65e-16 80.1
MsG0380013991.01.T01 AT3G57660 29.167 168 94 4 53 217 546 691 4.15e-12 67.8
MsG0380013991.01.T01 AT3G57660 29.167 168 94 4 53 217 559 704 4.54e-12 67.8
MsG0380013991.01.T01 AT4G35800 33.962 106 70 0 44 149 444 549 8.65e-12 67.0
MsG0380013991.01.T01 AT4G35800 33.962 106 70 0 44 149 444 549 8.65e-12 67.0
MsG0380013991.01.T01 AT2G40030 35.922 103 66 0 46 148 400 502 1.68e-11 65.9
MsG0380013991.01.T01 AT2G40030 35.922 103 66 0 46 148 400 502 1.86e-11 65.9

Find 74 sgRNAs with CRISPR-Local

Find 123 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAACAACAAAGTTCTATTT+TGG 0.177929 3:+48588159 MsG0380013991.01.T01:CDS
TCTGCTAATAAGTCGTTTAA+TGG 0.223864 3:-48587987 None:intergenic
ACCTCTTGTCTCCGGCTATT+GGG 0.225839 3:+48587252 MsG0380013991.01.T01:CDS
ATCCTCTCATTCCGACTAAT+TGG 0.248879 3:-48588366 None:intergenic
TGTTCATGTGCCTTTATCTT+TGG 0.264426 3:+48587187 MsG0380013991.01.T01:CDS
CCAACTCAAGATATGCTTAT+AGG 0.271742 3:+48587290 MsG0380013991.01.T01:CDS
CATTATATGGACTGGATTAA+AGG 0.289410 3:-48588305 None:intergenic
AACCTCTTGTCTCCGGCTAT+TGG 0.290298 3:+48587251 MsG0380013991.01.T01:CDS
GCACGTCCTTCTACTAAAAT+AGG 0.292699 3:-48587101 None:intergenic
GGGTCAGTCATCCTAAAATT+AGG 0.301712 3:-48588283 None:intergenic
AGCGCCTACTTTGCATAGAT+TGG 0.308716 3:+48587061 MsG0380013991.01.T01:CDS
TTCTCGTAAATTGCTTTGAA+TGG 0.322270 3:-48588425 None:intergenic
TTTACATCCATTAGTGTGTA+AGG 0.327520 3:+48587130 MsG0380013991.01.T01:CDS
AACTTTGTTGTTCAGCATCT+TGG 0.334259 3:-48588150 None:intergenic
TACGCCAATCCATTGAAATA+TGG 0.339395 3:+48588224 MsG0380013991.01.T01:CDS
ACTGCTACATCTATTTCATT+AGG 0.354727 3:+48588085 MsG0380013991.01.T01:CDS
ATCTTGAGTTGGTACGGAAA+TGG 0.362284 3:-48587279 None:intergenic
ATTATATGGACTGGATTAAA+GGG 0.370361 3:-48588304 None:intergenic
TGGACTAGCCATCCTTTAGA+AGG 0.382153 3:-48588130 None:intergenic
TTCCGCTAGTTAATACATAA+AGG 0.382446 3:-48587313 None:intergenic
TTGAATCCCTTACACACTAA+TGG 0.385461 3:-48587137 None:intergenic
TTTCAGACATTTCTAATTCG+TGG 0.395006 3:+48586916 MsG0380013991.01.T01:CDS
GGCGCTCTATTCAGCAATAC+TGG 0.401200 3:-48587044 None:intergenic
GGATTCAATGCAGACTTTGA+TGG 0.407959 3:+48587152 MsG0380013991.01.T01:CDS
TCATGTGCCTTTATCTTTGG+AGG 0.409231 3:+48587190 MsG0380013991.01.T01:CDS
AGCAGATTAATAGACCATTT+CGG 0.411046 3:+48588004 MsG0380013991.01.T01:CDS
GCTTGAGCCTCCAAAGATAA+AGG 0.413525 3:-48587197 None:intergenic
GATTCAATGCAGACTTTGAT+GGG 0.425961 3:+48587153 MsG0380013991.01.T01:CDS
TCTTGAGTTGGTACGGAAAT+GGG 0.426083 3:-48587278 None:intergenic
TCTCGTAAATTGCTTTGAAT+GGG 0.433790 3:-48588424 None:intergenic
CATACCATATTTCAATGGAT+TGG 0.443039 3:-48588228 None:intergenic
TTTGCATAGATTGGGCATAC+AGG 0.446557 3:+48587070 MsG0380013991.01.T01:CDS
TGTAGCATACCATATTTCAA+TGG 0.450731 3:-48588233 None:intergenic
CTGGATCAAGTAAAGACTCT+AGG 0.462436 3:+48588049 MsG0380013991.01.T01:CDS
CTAGAGTCTTTACTTGATCC+AGG 0.463607 3:-48588048 None:intergenic
GCGCCTACTTTGCATAGATT+GGG 0.476543 3:+48587062 MsG0380013991.01.T01:CDS
TGAAGTATTTCCCATACAAT+CGG 0.477354 3:-48587002 None:intergenic
CCTCTTGTCTCCGGCTATTG+GGG 0.480180 3:+48587253 MsG0380013991.01.T01:CDS
GTCTTTCACAATAACGTGAT+AGG 0.489141 3:+48587956 MsG0380013991.01.T01:CDS
GTTATTGTGAAAGACTAGAT+TGG 0.489846 3:-48587948 None:intergenic
GGCATATACATCACACATCC+TGG 0.495134 3:+48588030 MsG0380013991.01.T01:CDS
TAACAATACCTTCTAAAGGA+TGG 0.495965 3:+48588122 MsG0380013991.01.T01:CDS
TAGCTCTATTGCTATTTCGC+GGG 0.496998 3:-48586893 None:intergenic
TCATACAAACCTCTTGTCTC+CGG 0.506883 3:+48587244 MsG0380013991.01.T01:CDS
AAATCAATCATTTGTCCTTG+TGG 0.513235 3:-48588400 None:intergenic
GGATTGCTAAGAGTAAAATA+CGG 0.514031 3:+48586970 MsG0380013991.01.T01:CDS
ATAGCTCTATTGCTATTTCG+CGG 0.516257 3:-48586894 None:intergenic
TAGATGTAGCAGTAGCTTGA+CGG 0.516966 3:-48588075 None:intergenic
ATGTATATGCCATTCCGAAA+TGG 0.525535 3:-48588018 None:intergenic
AGACTTTGATGGGGATCAAA+TGG 0.531054 3:+48587163 MsG0380013991.01.T01:CDS
CCTATAAGCATATCTTGAGT+TGG 0.532621 3:-48587290 None:intergenic
TGGATCAAGTAAAGACTCTA+GGG 0.538268 3:+48588050 MsG0380013991.01.T01:CDS
AATACTTCAAGAAGTTATGC+GGG 0.538847 3:+48587016 MsG0380013991.01.T01:CDS
AAGCATATCTTGAGTTGGTA+CGG 0.543078 3:-48587285 None:intergenic
TTACATCCATTAGTGTGTAA+GGG 0.565613 3:+48587131 MsG0380013991.01.T01:CDS
GATTGCTAAGAGTAAAATAC+GGG 0.565661 3:+48586971 MsG0380013991.01.T01:CDS
ATGCCCAATCTATGCAAAGT+AGG 0.578492 3:-48587065 None:intergenic
CACCAATTAGTCGGAATGAG+AGG 0.580106 3:+48588364 MsG0380013991.01.T01:CDS
ATTAATAGACCATTTCGGAA+TGG 0.587547 3:+48588009 MsG0380013991.01.T01:CDS
GAAATGGGATCCCCAATAGC+CGG 0.587924 3:-48587263 None:intergenic
GGCCTTTATGTATTAACTAG+CGG 0.596927 3:+48587311 MsG0380013991.01.T01:CDS
AGCTCTATTGCTATTTCGCG+GGG 0.600779 3:-48586892 None:intergenic
ATTCAAAGCAATTTACGAGA+AGG 0.601229 3:+48588427 MsG0380013991.01.T01:CDS
TCTCAAGTGCACCAATTAGT+CGG 0.615181 3:+48588355 MsG0380013991.01.T01:CDS
CCCCAATAGCCGGAGACAAG+AGG 0.615798 3:-48587253 None:intergenic
AAATACTTCAAGAAGTTATG+CGG 0.639489 3:+48587015 MsG0380013991.01.T01:CDS
TTTCACAATAACGTGATAGG+TGG 0.645396 3:+48587959 MsG0380013991.01.T01:CDS
ATTCAATGCAGACTTTGATG+GGG 0.662689 3:+48587154 MsG0380013991.01.T01:CDS
TACTTCAAGAAGTTATGCGG+GGG 0.669171 3:+48587018 MsG0380013991.01.T01:CDS
TTATATGGACTGGATTAAAG+GGG 0.684921 3:-48588303 None:intergenic
ATACTTCAAGAAGTTATGCG+GGG 0.687954 3:+48587017 MsG0380013991.01.T01:CDS
TCAGTATGGGAATGTACATG+CGG 0.691247 3:+48588192 MsG0380013991.01.T01:CDS
GGATTAATGTCAGATCCACA+AGG 0.711466 3:+48588385 MsG0380013991.01.T01:CDS
TTAACTAGCGGAAATCGTCG+AGG 0.734048 3:+48587323 MsG0380013991.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTAAATTTATGTTATGATAC+TGG + Chr3:48587782-48587801 MsG0380013991.01.T01:intron 20.0%
!! GTACCTATTATGAAATTTAT+GGG + Chr3:48587588-48587607 MsG0380013991.01.T01:intron 20.0%
!! TTAGAATTTCTGCAATTAAA+CGG - Chr3:48587371-48587390 None:intergenic 20.0%
!!! AAGAAATGAATCCTAATTTT+AGG + Chr3:48588272-48588291 MsG0380013991.01.T01:CDS 20.0%
! AAATACTTCAAGAAGTTATG+CGG + Chr3:48587015-48587034 MsG0380013991.01.T01:CDS 25.0%
! AATGAATTTGAGTCAATGAT+TGG - Chr3:48587876-48587895 None:intergenic 25.0%
! ATAACATAAATTTACCTAGC+TGG - Chr3:48587777-48587796 None:intergenic 25.0%
! ATCATAGGAATTGCAAAAAA+AGG - Chr3:48587444-48587463 None:intergenic 25.0%
! ATGCCCATAAATTTCATAAT+AGG - Chr3:48587594-48587613 None:intergenic 25.0%
! ATGGTATCTAATCATATAGA+TGG + Chr3:48587738-48587757 MsG0380013991.01.T01:intron 25.0%
! CGTGAATAAACATAAAGAAA+AGG + Chr3:48587843-48587862 MsG0380013991.01.T01:intron 25.0%
! GGTACCTATTATGAAATTTA+TGG + Chr3:48587587-48587606 MsG0380013991.01.T01:intron 25.0%
! TCATAGGAATTGCAAAAAAA+GGG - Chr3:48587443-48587462 None:intergenic 25.0%
! TGATTAGATACCATATGAAT+AGG - Chr3:48587732-48587751 None:intergenic 25.0%
! TGGAAAAACATAATCAGTAT+GGG + Chr3:48588179-48588198 MsG0380013991.01.T01:CDS 25.0%
! TTGGAAAAACATAATCAGTA+TGG + Chr3:48588178-48588197 MsG0380013991.01.T01:CDS 25.0%
!! CTTTTAACAATACCTTCTAA+AGG + Chr3:48588118-48588137 MsG0380013991.01.T01:CDS 25.0%
!! TAAATTTCGATAGTCCTTTT+TGG + Chr3:48587492-48587511 MsG0380013991.01.T01:intron 25.0%
!! TGAACAACAAAGTTCTATTT+TGG + Chr3:48588159-48588178 MsG0380013991.01.T01:CDS 25.0%
!!! ATTATATGGACTGGATTAAA+GGG - Chr3:48588307-48588326 None:intergenic 25.0%
!!! TTTCAACCTATTTTAGTAGA+AGG + Chr3:48587095-48587114 MsG0380013991.01.T01:CDS 25.0%
AAAAGAAATATGACCAACAG+TGG - Chr3:48587669-48587688 None:intergenic 30.0%
AAATCAATCATTTGTCCTTG+TGG - Chr3:48588403-48588422 None:intergenic 30.0%
AATACTTCAAGAAGTTATGC+GGG + Chr3:48587016-48587035 MsG0380013991.01.T01:CDS 30.0%
ACTGCTACATCTATTTCATT+AGG + Chr3:48588085-48588104 MsG0380013991.01.T01:CDS 30.0%
AGCAGATTAATAGACCATTT+CGG + Chr3:48588004-48588023 MsG0380013991.01.T01:CDS 30.0%
ATATACATTAGAACCACTGT+TGG + Chr3:48587653-48587672 MsG0380013991.01.T01:intron 30.0%
ATTAATAGACCATTTCGGAA+TGG + Chr3:48588009-48588028 MsG0380013991.01.T01:CDS 30.0%
ATTCAAAGCAATTTACGAGA+AGG + Chr3:48588427-48588446 MsG0380013991.01.T01:CDS 30.0%
CATACCATATTTCAATGGAT+TGG - Chr3:48588231-48588250 None:intergenic 30.0%
CTCCTGAAAAAGACATTATA+TGG - Chr3:48588321-48588340 None:intergenic 30.0%
GAAAAAGACATTATATGGAC+TGG - Chr3:48588316-48588335 None:intergenic 30.0%
GAAATTGAAGAAGCTATACA+AGG + Chr3:48587695-48587714 MsG0380013991.01.T01:intron 30.0%
GATTGCTAAGAGTAAAATAC+GGG + Chr3:48586971-48586990 MsG0380013991.01.T01:CDS 30.0%
GGATTGCTAAGAGTAAAATA+CGG + Chr3:48586970-48586989 MsG0380013991.01.T01:CDS 30.0%
GTTATTGTGAAAGACTAGAT+TGG - Chr3:48587951-48587970 None:intergenic 30.0%
TCTGCTAATAAGTCGTTTAA+TGG - Chr3:48587990-48588009 None:intergenic 30.0%
TGTAGCATACCATATTTCAA+TGG - Chr3:48588236-48588255 None:intergenic 30.0%
TTACATCCATTAGTGTGTAA+GGG + Chr3:48587131-48587150 MsG0380013991.01.T01:CDS 30.0%
TTCCGCTAGTTAATACATAA+AGG - Chr3:48587316-48587335 None:intergenic 30.0%
TTTACATCCATTAGTGTGTA+AGG + Chr3:48587130-48587149 MsG0380013991.01.T01:CDS 30.0%
TTTCAGACATTTCTAATTCG+TGG + Chr3:48586916-48586935 MsG0380013991.01.T01:CDS 30.0%
! AAACATTTTGCTTCGAACAT+AGG + Chr3:48586949-48586968 MsG0380013991.01.T01:CDS 30.0%
! GAAGTTCACTATGAATCTTT+TGG + Chr3:48587566-48587585 MsG0380013991.01.T01:intron 30.0%
! GTCCATATAATGTCTTTTTC+AGG + Chr3:48588316-48588335 MsG0380013991.01.T01:CDS 30.0%
! TAACAATACCTTCTAAAGGA+TGG + Chr3:48588122-48588141 MsG0380013991.01.T01:CDS 30.0%
! TCTCGTAAATTGCTTTGAAT+GGG - Chr3:48588427-48588446 None:intergenic 30.0%
! TGAAGTATTTCCCATACAAT+CGG - Chr3:48587005-48587024 None:intergenic 30.0%
! TTCTCGTAAATTGCTTTGAA+TGG - Chr3:48588428-48588447 None:intergenic 30.0%
!! CATTATATGGACTGGATTAA+AGG - Chr3:48588308-48588327 None:intergenic 30.0%
!! TTATATGGACTGGATTAAAG+GGG - Chr3:48588306-48588325 None:intergenic 30.0%
ATAAGCTCCAATTGCATCAT+AGG - Chr3:48587459-48587478 None:intergenic 35.0%
ATACTTCAAGAAGTTATGCG+GGG + Chr3:48587017-48587036 MsG0380013991.01.T01:CDS 35.0%
ATGTATATGCCATTCCGAAA+TGG - Chr3:48588021-48588040 None:intergenic 35.0%
ATTCAATGCAGACTTTGATG+GGG + Chr3:48587154-48587173 MsG0380013991.01.T01:CDS 35.0%
CCAACTCAAGATATGCTTAT+AGG + Chr3:48587290-48587309 MsG0380013991.01.T01:CDS 35.0%
CCTATAAGCATATCTTGAGT+TGG - Chr3:48587293-48587312 None:intergenic 35.0%
GATTCAATGCAGACTTTGAT+GGG + Chr3:48587153-48587172 MsG0380013991.01.T01:CDS 35.0%
GATTCATAGTGAACTTCGAT+AGG - Chr3:48587563-48587582 None:intergenic 35.0%
GGAAAAAGAACCGATTGTAT+GGG + Chr3:48586992-48587011 MsG0380013991.01.T01:CDS 35.0%
GGCCTTTATGTATTAACTAG+CGG + Chr3:48587311-48587330 MsG0380013991.01.T01:CDS 35.0%
GTCTTTCACAATAACGTGAT+AGG + Chr3:48587956-48587975 MsG0380013991.01.T01:CDS 35.0%
TACGCCAATCCATTGAAATA+TGG + Chr3:48588224-48588243 MsG0380013991.01.T01:CDS 35.0%
TATGATACTGGCGTAAATTC+AGG + Chr3:48587794-48587813 MsG0380013991.01.T01:intron 35.0%
TGCAATTCCTATGATGCAAT+TGG + Chr3:48587449-48587468 MsG0380013991.01.T01:intron 35.0%
TGGATCAAGTAAAGACTCTA+GGG + Chr3:48588050-48588069 MsG0380013991.01.T01:CDS 35.0%
TGTTCATGTGCCTTTATCTT+TGG + Chr3:48587187-48587206 MsG0380013991.01.T01:CDS 35.0%
TTGAATCCCTTACACACTAA+TGG - Chr3:48587140-48587159 None:intergenic 35.0%
TTTCACAATAACGTGATAGG+TGG + Chr3:48587959-48587978 MsG0380013991.01.T01:CDS 35.0%
! TTTTCTCGAGCCTATTCATA+TGG + Chr3:48587719-48587738 MsG0380013991.01.T01:intron 35.0%
!! AACTTTGTTGTTCAGCATCT+TGG - Chr3:48588153-48588172 None:intergenic 35.0%
!! AAGCATATCTTGAGTTGGTA+CGG - Chr3:48587288-48587307 None:intergenic 35.0%
!! ATAGCTCTATTGCTATTTCG+CGG - Chr3:48586897-48586916 None:intergenic 35.0%
AGACTTTGATGGGGATCAAA+TGG + Chr3:48587163-48587182 MsG0380013991.01.T01:CDS 40.0%
ATATTCCACTCAGTGGGATT+CGG - Chr3:48587905-48587924 None:intergenic 40.0%
ATCCTCTCATTCCGACTAAT+TGG - Chr3:48588369-48588388 None:intergenic 40.0%
ATGCCCAATCTATGCAAAGT+AGG - Chr3:48587068-48587087 None:intergenic 40.0%
CTAGAGTCTTTACTTGATCC+AGG - Chr3:48588051-48588070 None:intergenic 40.0%
CTGGATCAAGTAAAGACTCT+AGG + Chr3:48588049-48588068 MsG0380013991.01.T01:CDS 40.0%
GCACGTCCTTCTACTAAAAT+AGG - Chr3:48587104-48587123 None:intergenic 40.0%
GGATTAATGTCAGATCCACA+AGG + Chr3:48588385-48588404 MsG0380013991.01.T01:CDS 40.0%
GGATTCAATGCAGACTTTGA+TGG + Chr3:48587152-48587171 MsG0380013991.01.T01:CDS 40.0%
GGGAAAAAGAACCGATTGTA+TGG + Chr3:48586991-48587010 MsG0380013991.01.T01:CDS 40.0%
GGGTCAGTCATCCTAAAATT+AGG - Chr3:48588286-48588305 None:intergenic 40.0%
TACTTCAAGAAGTTATGCGG+GGG + Chr3:48587018-48587037 MsG0380013991.01.T01:CDS 40.0%
TAGATGTAGCAGTAGCTTGA+CGG - Chr3:48588078-48588097 None:intergenic 40.0%
TCAGTATGGGAATGTACATG+CGG + Chr3:48588192-48588211 MsG0380013991.01.T01:CDS 40.0%
TCATACAAACCTCTTGTCTC+CGG + Chr3:48587244-48587263 MsG0380013991.01.T01:CDS 40.0%
TCATGTGCCTTTATCTTTGG+AGG + Chr3:48587190-48587209 MsG0380013991.01.T01:CDS 40.0%
TCTCAAGTGCACCAATTAGT+CGG + Chr3:48588355-48588374 MsG0380013991.01.T01:CDS 40.0%
TTTGCATAGATTGGGCATAC+AGG + Chr3:48587070-48587089 MsG0380013991.01.T01:CDS 40.0%
!! ATCTTGAGTTGGTACGGAAA+TGG - Chr3:48587282-48587301 None:intergenic 40.0%
!! GTGGAATATGGAGGTACTTA+TGG + Chr3:48587916-48587935 MsG0380013991.01.T01:intron 40.0%
!! GTTAGTGTTGATATCCAGCT+AGG + Chr3:48587760-48587779 MsG0380013991.01.T01:intron 40.0%
!! TAGCTCTATTGCTATTTCGC+GGG - Chr3:48586896-48586915 None:intergenic 40.0%
!! TCTTGAGTTGGTACGGAAAT+GGG - Chr3:48587281-48587300 None:intergenic 40.0%
!!! ATGTCTTTTTCAGGAGCTAG+AGG + Chr3:48588325-48588344 MsG0380013991.01.T01:CDS 40.0%
ACCTCCATATTCCACTCAGT+GGG - Chr3:48587911-48587930 None:intergenic 45.0%
AGCGCCTACTTTGCATAGAT+TGG + Chr3:48587061-48587080 MsG0380013991.01.T01:CDS 45.0%
CACCAATTAGTCGGAATGAG+AGG + Chr3:48588364-48588383 MsG0380013991.01.T01:CDS 45.0%
GAATCCCACTGAGTGGAATA+TGG + Chr3:48587904-48587923 MsG0380013991.01.T01:intron 45.0%
GCGCCTACTTTGCATAGATT+GGG + Chr3:48587062-48587081 MsG0380013991.01.T01:CDS 45.0%
GCTTGAGCCTCCAAAGATAA+AGG - Chr3:48587200-48587219 None:intergenic 45.0%
GGCATATACATCACACATCC+TGG + Chr3:48588030-48588049 MsG0380013991.01.T01:CDS 45.0%
TACCTCCATATTCCACTCAG+TGG - Chr3:48587912-48587931 None:intergenic 45.0%
TTAACTAGCGGAAATCGTCG+AGG + Chr3:48587323-48587342 MsG0380013991.01.T01:CDS 45.0%
! GTCGAGGTATTTGTGCAAAC+AGG + Chr3:48587339-48587358 MsG0380013991.01.T01:intron 45.0%
! TGCATTGATCTATTCGCCAC+CGG - Chr3:48587520-48587539 None:intergenic 45.0%
!! AGCTCTATTGCTATTTCGCG+GGG - Chr3:48586895-48586914 None:intergenic 45.0%
!! TGGACTAGCCATCCTTTAGA+AGG - Chr3:48588133-48588152 None:intergenic 45.0%
!! TGGAGGTACTTATGGCAGAA+CGG + Chr3:48587924-48587943 MsG0380013991.01.T01:intron 45.0%
!!! TCGATAGTCCTTTTTGGCTC+CGG + Chr3:48587498-48587517 MsG0380013991.01.T01:intron 45.0%
AACCTCTTGTCTCCGGCTAT+TGG + Chr3:48587251-48587270 MsG0380013991.01.T01:CDS 50.0%
ACCTCTTGTCTCCGGCTATT+GGG + Chr3:48587252-48587271 MsG0380013991.01.T01:CDS 50.0%
GAAATGGGATCCCCAATAGC+CGG - Chr3:48587266-48587285 None:intergenic 50.0%
GGCGCTCTATTCAGCAATAC+TGG - Chr3:48587047-48587066 None:intergenic 50.0%
TCCCACTGAGTGGAATATGG+AGG + Chr3:48587907-48587926 MsG0380013991.01.T01:intron 50.0%
!! GGAGGTACTTATGGCAGAAC+GGG + Chr3:48587925-48587944 MsG0380013991.01.T01:intron 50.0%
!!! ATAGTCCTTTTTGGCTCCGG+TGG + Chr3:48587501-48587520 MsG0380013991.01.T01:intron 50.0%
ATTCGCCACCGGAGCCAAAA+AGG - Chr3:48587509-48587528 None:intergenic 55.0%
CCTCTTGTCTCCGGCTATTG+GGG + Chr3:48587253-48587272 MsG0380013991.01.T01:CDS 55.0%
TCGAACCGAATCCCACTGAG+TGG + Chr3:48587897-48587916 MsG0380013991.01.T01:intron 55.0%
CCCCAATAGCCGGAGACAAG+AGG - Chr3:48587256-48587275 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48586882 48588471 48586882 ID=MsG0380013991.01;Name=MsG0380013991.01
Chr3 mRNA 48586882 48588471 48586882 ID=MsG0380013991.01.T01;Parent=MsG0380013991.01;Name=MsG0380013991.01.T01;_AED=0.50;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|330
Chr3 exon 48586882 48587344 48586882 ID=MsG0380013991.01.T01:exon:8523;Parent=MsG0380013991.01.T01
Chr3 exon 48587942 48588471 48587942 ID=MsG0380013991.01.T01:exon:8524;Parent=MsG0380013991.01.T01
Chr3 CDS 48586882 48587344 48586882 ID=MsG0380013991.01.T01:cds;Parent=MsG0380013991.01.T01
Chr3 CDS 48587942 48588471 48587942 ID=MsG0380013991.01.T01:cds;Parent=MsG0380013991.01.T01
Gene Sequence

>MsG0380013991.01.T01

ATGTGGATTGCCCCGCGAAATAGCAATAGAGCTATTTCAGACATTTCTAATTCGTGGTTTAATTCGAAAACATTTTGCTTCGAACATAGGATTGCTAAGAGTAAAATACGGGAAAAAGAACCGATTGTATGGGAAATACTTCAAGAAGTTATGCGGGGGCATCCAGTATTGCTGAATAGAGCGCCTACTTTGCATAGATTGGGCATACAGGCATTTCAACCTATTTTAGTAGAAGGACGTGCTATTTGTTTACATCCATTAGTGTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTGCCTTTATCTTTGGAGGCTCAAGCAGAAGCTCGTTTACTTATGTTTTCTCATACAAACCTCTTGTCTCCGGCTATTGGGGATCCCATTTCCGTACCAACTCAAGATATGCTTATAGGCCTTTATGTATTAACTAGCGGAAATCGTCGAGAACGGGCCAATCTAGTCTTTCACAATAACGTGATAGGTGGAACTGCCATTAAACGACTTATTAGCAGATTAATAGACCATTTCGGAATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTAGGGTTCCGTCAAGCTACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTCTATTTTGGAAAAACATAATCAGTATGGGAATGTACATGCGGTAGAAAAATTACGCCAATCCATTGAAATATGGTATGCTACAAGCGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCCTTTAATCCAGTCCATATAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCTCAAGTGCACCAATTAGTCGGAATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGAGAAGGACTGTCTTTAACAGAAATATAA
Protein sequence

>MsG0380013991.01.T01

MWIAPRNSNRAISDISNSWFNSKTFCFEHRIAKSKIREKEPIVWEILQEVMRGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHTNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRERANLVFHNNVIGGTAIKRLISRLIDHFGMAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEI*