AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013959.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013959.01.T01 MTR_4g051120 87.849 502 55 2 1 502 36 531 0.0 894
MsG0380013959.01.T01 MTR_4g051120 74.462 325 58 4 352 657 1021 1339 5.79e-144 454
MsG0380013959.01.T01 MTR_0002s0510 85.584 437 56 2 1 431 1703 2138 0.0 785
MsG0380013959.01.T01 MTR_0002s0510 87.444 223 28 0 433 655 2882 3104 1.87e-120 397
MsG0380013959.01.T01 MTR_7g116700 91.701 241 20 0 430 670 273 513 3.84e-148 441
MsG0380013959.01.T01 MTR_8g016520 90.583 223 5 1 1 223 36 242 9.97e-139 406
MsG0380013959.01.T01 MTR_7g069560 83.482 224 16 2 430 653 160 362 4.34e-118 358
MsG0380013959.01.T01 MTR_5g098620 57.843 204 54 3 372 575 41 212 9.54e-63 207
MsG0380013959.01.T01 MTR_2g080240 95.000 40 2 0 1 40 55 94 1.42e-18 81.6
MsG0380013959.01.T01 MTR_1g068920 57.576 66 7 1 366 431 3 47 2.56e-16 73.6
MsG0380013959.01.T01 MTR_1g068910 54.545 66 9 1 366 431 3 47 2.42e-15 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013959.01.T01 ATCG00170 90.069 433 41 1 1 431 32 464 0.0 815
MsG0380013959.01.T01 ATCG00170 88.889 225 24 1 433 656 1108 1332 9.16e-127 408
MsG0380013959.01.T01 AT3G57660 28.458 253 139 10 95 311 936 1182 3.60e-15 80.5
MsG0380013959.01.T01 AT3G57660 28.458 253 139 10 95 311 923 1169 3.85e-15 80.1

Find 132 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTTGTATCAAAATTCTTTC+TGG 0.155430 3:+48515206 None:intergenic
TTCTGGTATCATTCCATTTC+GGG 0.158141 3:+48515223 None:intergenic
TGAACAACAAAGTTCTATTT+TGG 0.177929 3:-48515687 MsG0380013959.01.T01:CDS
AATCAAATGACTGCATTTAA+AGG 0.194435 3:+48510706 None:intergenic
TAATTTCGATATGTCTATTA+TGG 0.208042 3:+48511239 None:intergenic
TCTAATATCTGTTCCACTTT+TGG 0.236437 3:+48511448 None:intergenic
ATCCTCTCATTCCGACTAAT+TGG 0.248879 3:+48515480 None:intergenic
CCTGGGATCGATAAACCTTT+TGG 0.276582 3:+48511272 None:intergenic
CATTATATGGACTGGATTAA+AGG 0.289410 3:+48515541 None:intergenic
CTGTGATACATTAGAAATAT+AGG 0.292339 3:-48510763 MsG0380013959.01.T01:intron
GGATCTGCCGATTGTGTTAT+GGG 0.297223 3:-48515025 MsG0380013959.01.T01:CDS
TTTCTGGTATCATTCCATTT+CGG 0.299397 3:+48515222 None:intergenic
TGTTACCGAGCTTTATTATT+GGG 0.299555 3:-48511091 MsG0380013959.01.T01:CDS
TTGTTACCGAGCTTTATTAT+TGG 0.301429 3:-48511092 MsG0380013959.01.T01:CDS
TGGATCTGCCGATTGTGTTA+TGG 0.301508 3:-48515026 MsG0380013959.01.T01:CDS
GGGTCAGTCATCCTAAAATT+AGG 0.301712 3:+48515563 None:intergenic
AGCGCAAAGTCGTATTTCTT+TGG 0.301847 3:-48511305 MsG0380013959.01.T01:CDS
TCATGGGGACCTGGTAGAAT+TGG 0.318933 3:-48514991 MsG0380013959.01.T01:CDS
TTCTCGTAAATTGCTTTGAA+TGG 0.322270 3:+48515421 None:intergenic
CAGTATCCACAACCCCTTTA+CGG 0.329838 3:+48515357 None:intergenic
AACTTTGTTGTTCAGCATCT+TGG 0.334259 3:+48515696 None:intergenic
AGAAATCAAGATATTGGAAT+TGG 0.334567 3:-48515125 MsG0380013959.01.T01:CDS
TTTAGCAAAAGCCGCTCTTC+GGG 0.336042 3:-48510999 MsG0380013959.01.T01:CDS
TACGCCAATCCATTGAAATA+TGG 0.339395 3:-48515622 MsG0380013959.01.T01:CDS
ATTATTGCTGGTCAATCTAT+TGG 0.340445 3:-48514954 MsG0380013959.01.T01:CDS
ATTCCTTGGGGATTCTTGAT+TGG 0.341306 3:-48511343 MsG0380013959.01.T01:CDS
GTCGTTAGAAATCAAGATAT+TGG 0.341954 3:-48515131 MsG0380013959.01.T01:CDS
CTCTTCGGGGTCGTATTGAT+TGG 0.345022 3:-48510985 MsG0380013959.01.T01:CDS
ACTGCTACATCTATTTCATT+AGG 0.354727 3:-48515761 MsG0380013959.01.T01:CDS
GATAAAGGATTTCTCCATAA+TGG 0.357948 3:+48511536 None:intergenic
CTAAAATATCTCCTTGATAA+AGG 0.358065 3:+48511521 None:intergenic
CTTAATGTTAGTTGAGTTCC+CGG 0.369671 3:+48514927 None:intergenic
ATTATATGGACTGGATTAAA+GGG 0.370361 3:+48515542 None:intergenic
GCAACCATTCATGGCCATTA+TGG 0.371253 3:-48511550 MsG0380013959.01.T01:CDS
ATCTTCTGAAACCAAGACTT+TGG 0.372706 3:+48511198 None:intergenic
AAAGTCTTGGTTTCAGAAGA+TGG 0.375293 3:-48511196 MsG0380013959.01.T01:CDS
TGGACTAGCCATCCTTTAGA+AGG 0.382153 3:+48515716 None:intergenic
CAAGAATTCTCGGCATTCCT+TGG 0.385715 3:-48511357 MsG0380013959.01.T01:CDS
ATTTCTGTAAATACCCGAAA+TGG 0.389944 3:-48515236 MsG0380013959.01.T01:CDS
AGTATCCACAACCCCTTTAC+GGG 0.401249 3:+48515358 None:intergenic
AAGAATTCTCGGCATTCCTT+GGG 0.401980 3:-48511356 MsG0380013959.01.T01:CDS
TGGTCAATCTATTGGCGAAC+CGG 0.405693 3:-48514946 MsG0380013959.01.T01:CDS
CTTGCTACGGAGCCCGTAAA+GGG 0.410011 3:-48515370 MsG0380013959.01.T01:CDS
ATCAAATGACTGCATTTAAA+GGG 0.412174 3:+48510707 None:intergenic
AAAGAATAATGCACCGTTCA+CGG 0.414603 3:-48510901 MsG0380013959.01.T01:intron
GACGTATTCCTACAGGTAAA+GGG 0.421613 3:+48515050 None:intergenic
TCAAATAACATCCAAAGTCT+TGG 0.427039 3:-48511209 MsG0380013959.01.T01:CDS
TCTCGTAAATTGCTTTGAAT+GGG 0.433790 3:+48515422 None:intergenic
ACTCCAGGAGCAACCATTCA+TGG 0.440561 3:-48511559 MsG0380013959.01.T01:intron
TCTACCAGGTCCCCATGAAT+AGG 0.440638 3:+48514996 None:intergenic
CATGGGGACCTGGTAGAATT+GGG 0.442448 3:-48514990 MsG0380013959.01.T01:CDS
CATACCATATTTCAATGGAT+TGG 0.443039 3:+48515618 None:intergenic
CAGATTGCGGTACGATTCGC+GGG 0.446348 3:-48515259 MsG0380013959.01.T01:CDS
TGTAGCATACCATATTTCAA+TGG 0.450731 3:+48515613 None:intergenic
CATACTGGTGGAGTATTCAC+AGG 0.451249 3:-48514897 MsG0380013959.01.T01:CDS
CTGGATCAAGTAAAGACTCT+AGG 0.462436 3:-48515797 MsG0380013959.01.T01:CDS
CTAGAGTCTTTACTTGATCC+AGG 0.463607 3:+48515798 None:intergenic
AGACGTATTCCTACAGGTAA+AGG 0.465006 3:+48515049 None:intergenic
GAGTGTATAACAAGAATTCT+CGG 0.465449 3:-48511367 MsG0380013959.01.T01:CDS
CAATAATCCAATTAATTCAC+CGG 0.465805 3:+48511153 None:intergenic
TATGGAGAAATCCTTTATCA+AGG 0.470177 3:-48511532 MsG0380013959.01.T01:CDS
GTAGCAGACGATATATATAT+CGG 0.471989 3:-48515167 MsG0380013959.01.T01:CDS
TTCTCCATAATGGCCATGAA+TGG 0.483718 3:+48511546 None:intergenic
AGTTTCTTGAAAACTCGCTT+CGG 0.487107 3:+48511030 None:intergenic
TTTGGTTAATAAAATCCAAA+AGG 0.488399 3:-48511287 MsG0380013959.01.T01:CDS
TCTTGCTACGGAGCCCGTAA+AGG 0.490200 3:-48515371 MsG0380013959.01.T01:CDS
AACACAAGGTCTTCCAAAAG+TGG 0.491269 3:-48511461 MsG0380013959.01.T01:CDS
GGCATATACATCACACATCC+TGG 0.495134 3:-48515816 MsG0380013959.01.T01:CDS
TATTATGGATGTGTACTCCC+TGG 0.495688 3:+48511254 None:intergenic
TAACAATACCTTCTAAAGGA+TGG 0.495965 3:-48515724 MsG0380013959.01.T01:CDS
ACTCAGAAGGCGAAATGCAT+TGG 0.496258 3:-48514584 MsG0380013959.01.T01:CDS
GAAGCTGTAGGTATTATTGC+TGG 0.500714 3:-48514966 MsG0380013959.01.T01:CDS
ATGGGCGGAGTCCTATTCAT+GGG 0.508984 3:-48515007 MsG0380013959.01.T01:CDS
AGAACGAACTGGGCGTGCCT+TGG 0.511332 3:-48511125 MsG0380013959.01.T01:CDS
GACTCCGCCCATAACACAAT+CGG 0.512450 3:+48515018 None:intergenic
CGGAGCCCGTAAAGGGGTTG+TGG 0.513039 3:-48515363 MsG0380013959.01.T01:CDS
AAATCAATCATTTGTCCTTG+TGG 0.513235 3:+48515446 None:intergenic
TAGATGTAGCAGTAGCTTGA+CGG 0.516966 3:+48515771 None:intergenic
TATGGGCGGAGTCCTATTCA+TGG 0.517790 3:-48515008 MsG0380013959.01.T01:CDS
ATTATGGATGTGTACTCCCT+GGG 0.522327 3:+48511255 None:intergenic
GGTCGTATTGATTGGTTGAA+AGG 0.523725 3:-48510977 MsG0380013959.01.T01:CDS
TTATTGCGAGCAGAACGAAC+TGG 0.524459 3:-48511136 MsG0380013959.01.T01:CDS
GGTCAATCTATTGGCGAACC+GGG 0.527123 3:-48514945 MsG0380013959.01.T01:CDS
CCAAAAGGTTTATCGATCCC+AGG 0.528931 3:-48511272 MsG0380013959.01.T01:CDS
ACAGATTGCGGTACGATTCG+CGG 0.531220 3:-48515260 MsG0380013959.01.T01:CDS
GAATATATAATTTCTTGCTA+CGG 0.534554 3:-48515383 MsG0380013959.01.T01:CDS
ATCCATGACGTGTACGTGTA+GGG 0.535056 3:+48514808 None:intergenic
CAGCTTCTCCCAATTCTACC+AGG 0.535523 3:+48514982 None:intergenic
TCTATATTACATATAAAAGC+AGG 0.536951 3:+48514783 None:intergenic
TGGATCAAGTAAAGACTCTA+GGG 0.538268 3:-48515796 MsG0380013959.01.T01:CDS
GGAATGATACCCGTTGGTAC+CGG 0.541673 3:-48510929 MsG0380013959.01.T01:CDS
GTAACAAATTGCTTCTTCCA+AGG 0.542955 3:+48511108 None:intergenic
GATCCAAGACGTATTCCTAC+AGG 0.544747 3:+48515043 None:intergenic
TTACCTGTAGGAATACGTCT+TGG 0.547868 3:-48515046 MsG0380013959.01.T01:CDS
CATATTTATTCTGACTCAGA+AGG 0.548655 3:-48514597 MsG0380013959.01.T01:CDS
TATATTGCGTTGACCGTGAA+CGG 0.550663 3:+48510888 None:intergenic
AAGACCTTGTGTTATATCAC+CGG 0.552596 3:+48511471 None:intergenic
TTATTCCCAATAATAAAGCT+CGG 0.553354 3:+48511086 None:intergenic
CACCCTACACGTACACGTCA+TGG 0.566616 3:-48514810 MsG0380013959.01.T01:CDS
TATTGCGAGCAGAACGAACT+GGG 0.572451 3:-48511135 MsG0380013959.01.T01:CDS
GCTGTACGAACATCAGATGC+TGG 0.573261 3:-48515335 MsG0380013959.01.T01:CDS
TACACGTCGACTTGTTGAAG+TGG 0.573503 3:-48515306 MsG0380013959.01.T01:CDS
CACCAATTAGTCGGAATGAG+AGG 0.580106 3:-48515482 MsG0380013959.01.T01:CDS
GAGTCCTATTCATGGGGACC+TGG 0.582108 3:-48515000 MsG0380013959.01.T01:CDS
ACGATATATATATCGGTTCA+CGG 0.590851 3:-48515160 MsG0380013959.01.T01:CDS
TATCCATGACGTGTACGTGT+AGG 0.600683 3:+48514807 None:intergenic
ATTCAAAGCAATTTACGAGA+AGG 0.601229 3:-48515419 MsG0380013959.01.T01:CDS
CAAAAGGTTTATCGATCCCA+GGG 0.609012 3:-48511271 MsG0380013959.01.T01:CDS
TCTCAAGTGCACCAATTAGT+CGG 0.615181 3:-48515491 MsG0380013959.01.T01:CDS
ATCAATACGACCCCGAAGAG+CGG 0.623604 3:+48510988 None:intergenic
GTGATTGCTGAGATCCGCGC+GGG 0.626051 3:-48514657 MsG0380013959.01.T01:CDS
AGAATTCTCGGCATTCCTTG+GGG 0.628635 3:-48511355 MsG0380013959.01.T01:CDS
ACGTATTCCTACAGGTAAAG+GGG 0.629974 3:+48515051 None:intergenic
AATAATCCAATTAATTCACC+GGG 0.632479 3:+48511154 None:intergenic
TTGCTACGGAGCCCGTAAAG+GGG 0.638134 3:-48515369 MsG0380013959.01.T01:CDS
GTAGAATTGGGAGAAGCTGT+AGG 0.641313 3:-48514978 MsG0380013959.01.T01:CDS
ATACTGGTGGAGTATTCACA+GGG 0.646983 3:-48514896 MsG0380013959.01.T01:CDS
GTTGTACGTCGAACAGATTG+CGG 0.659130 3:-48515272 MsG0380013959.01.T01:CDS
TGGGCGGAGTCCTATTCATG+GGG 0.665077 3:-48515006 MsG0380013959.01.T01:CDS
TTAGCAAAAGCCGCTCTTCG+GGG 0.665173 3:-48510998 MsG0380013959.01.T01:CDS
GCACCAATCAAGAATCCCCA+AGG 0.666821 3:+48511340 None:intergenic
CGTATTCCTACAGGTAAAGG+GGG 0.679391 3:+48515052 None:intergenic
TTATATGGACTGGATTAAAG+GGG 0.684921 3:+48515543 None:intergenic
TCAGTATGGGAATGTACATG+CGG 0.691247 3:-48515654 MsG0380013959.01.T01:CDS
TTCGGATGCATGGTACACAT+CGG 0.696241 3:+48514557 None:intergenic
GGATTAATGTCAGATCCACA+AGG 0.711466 3:-48515461 MsG0380013959.01.T01:CDS
AGATCCGGTGATATAACACA+AGG 0.736976 3:-48511475 MsG0380013959.01.T01:CDS
TCTGCCGATTGTGTTATGGG+CGG 0.746299 3:-48515022 MsG0380013959.01.T01:CDS
TAAAAGTATATGTTCCCGCG+CGG 0.748407 3:+48514643 None:intergenic
ACTGGTGGAGTATTCACAGG+GGG 0.750203 3:-48514894 MsG0380013959.01.T01:CDS
AGTGATTGCTGAGATCCGCG+CGG 0.769084 3:-48514658 MsG0380013959.01.T01:CDS
TACTGGTGGAGTATTCACAG+GGG 0.793942 3:-48514895 MsG0380013959.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAAAATCAAAAAACT+GGG + Chr3:48513927-48513946 None:intergenic 10.0%
!! AATCAAAAAAAATTCATAAT+TGG - Chr3:48512865-48512884 MsG0380013959.01.T01:intron 10.0%
!! ATTTAATCAAATAATATGTA+CGG - Chr3:48512240-48512259 MsG0380013959.01.T01:intron 10.0%
!! TCAATTCTAAATTAAATAAA+GGG - Chr3:48514191-48514210 MsG0380013959.01.T01:intron 10.0%
!! TTCAATTCTAAATTAAATAA+AGG - Chr3:48514190-48514209 MsG0380013959.01.T01:intron 10.0%
!!! GAATAATTTTTTTTTTTTCA+AGG + Chr3:48515673-48515692 None:intergenic 10.0%
!!! TTTCTTTTCTTTATTTTATT+TGG + Chr3:48514684-48514703 None:intergenic 10.0%
!!! TTTTTAAAAGATTAAACAAA+AGG - Chr3:48514407-48514426 MsG0380013959.01.T01:intron 10.0%
!!! TTTTTCTTTAATAATAAGAT+CGG - Chr3:48514927-48514946 MsG0380013959.01.T01:CDS 10.0%
!!! TTTTTTTTTTCTTTTCTAAT+CGG + Chr3:48512732-48512751 None:intergenic 10.0%
!! AATTATATTCTTTATGGAAA+TGG - Chr3:48513041-48513060 MsG0380013959.01.T01:intron 15.0%
!! AATTCTAAATTAAATAAAGG+GGG - Chr3:48514193-48514212 MsG0380013959.01.T01:intron 15.0%
!! ATAAATTAATCAGAATTCTT+TGG + Chr3:48513301-48513320 None:intergenic 15.0%
!! ATAATTAAGTCATAATTTCT+TGG + Chr3:48514726-48514745 None:intergenic 15.0%
!! ATTACTAAATATAGAACTAT+AGG - Chr3:48512490-48512509 MsG0380013959.01.T01:intron 15.0%
!! CAATACAAGATTAAAATATT+TGG - Chr3:48513219-48513238 MsG0380013959.01.T01:intron 15.0%
!! CAATTCTAAATTAAATAAAG+GGG - Chr3:48514192-48514211 MsG0380013959.01.T01:intron 15.0%
!! GAATAAAAAAATCAAAAAAC+TGG + Chr3:48513928-48513947 None:intergenic 15.0%
!! TACATTACTATACAAAAATT+CGG + Chr3:48511990-48512009 None:intergenic 15.0%
!!! ATACTTTTAATTTGAAAGAA+AGG - Chr3:48511897-48511916 MsG0380013959.01.T01:intron 15.0%
!!! ATCGAATTAAAAATATTTTC+TGG - Chr3:48512753-48512772 MsG0380013959.01.T01:intron 15.0%
!!! ATTTTGATACAAACATTAAT+TGG - Chr3:48511329-48511348 MsG0380013959.01.T01:CDS 15.0%
!!! CAAATATTTTAATCTTGTAT+TGG + Chr3:48513221-48513240 None:intergenic 15.0%
!!! GTATTAATTTTTTTTGGAAA+GGG + Chr3:48513740-48513759 None:intergenic 15.0%
!!! TACTTTTAATTTGAAAGAAA+GGG - Chr3:48511898-48511917 MsG0380013959.01.T01:intron 15.0%
!!! TGTAATTTTATATGAAATAC+CGG - Chr3:48512944-48512963 MsG0380013959.01.T01:intron 15.0%
!!! TGTATTAATTTTTTTTGGAA+AGG + Chr3:48513741-48513760 None:intergenic 15.0%
!!! TTCTTTATTTTATTTGGAAT+AGG + Chr3:48514678-48514697 None:intergenic 15.0%
!! AAAAGATTAAACAAAAGGAT+TGG - Chr3:48514412-48514431 MsG0380013959.01.T01:intron 20.0%
!! AAATGAATATCGAAGTTATT+TGG + Chr3:48514812-48514831 None:intergenic 20.0%
!! ATAAATTGTAGGAGTTAAAT+CGG - Chr3:48514278-48514297 MsG0380013959.01.T01:intron 20.0%
!! ATTCTGATTAATTTATACGT+AGG - Chr3:48513305-48513324 MsG0380013959.01.T01:intron 20.0%
!! GAATATATAATTTCTTGCTA+CGG - Chr3:48511143-48511162 MsG0380013959.01.T01:CDS 20.0%
!! GGTATTTCATATAAAATTAC+AGG + Chr3:48512945-48512964 None:intergenic 20.0%
!! GTTGTCAATTATATTCTTTA+TGG - Chr3:48513035-48513054 MsG0380013959.01.T01:intron 20.0%
!! GTTTATTTCAAAGAATAGAT+TGG + Chr3:48513703-48513722 None:intergenic 20.0%
!! TAATTTCGATATGTCTATTA+TGG + Chr3:48515290-48515309 None:intergenic 20.0%
!! TACAAGATTAAAATATTTGG+AGG - Chr3:48513222-48513241 MsG0380013959.01.T01:intron 20.0%
!! TAGATTCTATATTCTCTAAT+TGG - Chr3:48514089-48514108 MsG0380013959.01.T01:intron 20.0%
!! TCTATATTACATATAAAAGC+AGG + Chr3:48511746-48511765 None:intergenic 20.0%
!! TTTGGTTAATAAAATCCAAA+AGG - Chr3:48515239-48515258 MsG0380013959.01.T01:CDS 20.0%
!!! AAAAGTATTTTGTTTTGGTT+CGG - Chr3:48512919-48512938 MsG0380013959.01.T01:intron 20.0%
!!! AAATTTTATTTTTCCATTCG+AGG + Chr3:48511681-48511700 None:intergenic 20.0%
!!! AAGAAATGAATCCTAATTTT+AGG - Chr3:48510952-48510971 MsG0380013959.01.T01:CDS 20.0%
!!! AATCAAATAATTTTCTGTGA+TGG + Chr3:48515722-48515741 None:intergenic 20.0%
!!! AATTTTATTTTTCCATTCGA+GGG + Chr3:48511680-48511699 None:intergenic 20.0%
!!! CAAAACAAAATACTTTTTCT+TGG + Chr3:48512916-48512935 None:intergenic 20.0%
!!! CAAGAAAAAGTATTTTGTTT+TGG - Chr3:48512914-48512933 MsG0380013959.01.T01:intron 20.0%
!!! CTAGGTGTATTAATTTTTTT+TGG + Chr3:48513746-48513765 None:intergenic 20.0%
!!! GAAATCTTCTTTTTGAAAAA+CGG + Chr3:48512524-48512543 None:intergenic 20.0%
!!! TAGATTTGTTGCTAAAATAT+CGG - Chr3:48513784-48513803 MsG0380013959.01.T01:intron 20.0%
!!! TCACGATACTTTTTATTTAT+TGG - Chr3:48512294-48512313 MsG0380013959.01.T01:intron 20.0%
!!! TGAACTAATAGAAAACTTTT+TGG + Chr3:48511821-48511840 None:intergenic 20.0%
!!! TTAAAGAGAATGTTGTTTTA+GGG - Chr3:48515574-48515593 MsG0380013959.01.T01:CDS 20.0%
!!! TTATTAAGTTTGAAGACTTT+TGG - Chr3:48512184-48512203 MsG0380013959.01.T01:intron 20.0%
! AAAATCGATCTACTTTGATT+TGG + Chr3:48512585-48512604 None:intergenic 25.0%
! AACGGTAAAAAAAAAATGGA+AGG - Chr3:48512842-48512861 MsG0380013959.01.T01:intron 25.0%
! AATAATCCAATTAATTCACC+GGG + Chr3:48515375-48515394 None:intergenic 25.0%
! AATGAAGCAAAGAAAAGAAT+CGG - Chr3:48513841-48513860 MsG0380013959.01.T01:intron 25.0%
! AGAAATCAAGATATTGGAAT+TGG - Chr3:48511401-48511420 MsG0380013959.01.T01:CDS 25.0%
! AGAACGAAGAATTAAAAGAA+TGG + Chr3:48514904-48514923 None:intergenic 25.0%
! ATATATGAAAAATCGAGATC+CGG - Chr3:48515036-48515055 MsG0380013959.01.T01:CDS 25.0%
! CAATAATCCAATTAATTCAC+CGG + Chr3:48515376-48515395 None:intergenic 25.0%
! CCTACAATTTATTCTTCATT+CGG + Chr3:48514270-48514289 None:intergenic 25.0%
! CTAAAATATCTCCTTGATAA+AGG + Chr3:48515008-48515027 None:intergenic 25.0%
! CTATGAAAAATACCATTGAT+AGG + Chr3:48512415-48512434 None:intergenic 25.0%
! CTGTGATACATTAGAAATAT+AGG - Chr3:48515763-48515782 MsG0380013959.01.T01:CDS 25.0%
! CTTCTTATATTGAAAGTGAT+TGG + Chr3:48512691-48512710 None:intergenic 25.0%
! GTTTGTATCAAAATTCTTTC+TGG + Chr3:48511323-48511342 None:intergenic 25.0%
! TACCAAAAACAAGTCATTTA+TGG - Chr3:48512017-48512036 MsG0380013959.01.T01:intron 25.0%
! TGGAAAAACATAATCAGTAT+GGG - Chr3:48510859-48510878 MsG0380013959.01.T01:intron 25.0%
! TGTATTCACAAAAAACTACA+TGG + Chr3:48514850-48514869 None:intergenic 25.0%
! TTATTCCCAATAATAAAGCT+CGG + Chr3:48515443-48515462 None:intergenic 25.0%
! TTCTCTTTACGATGAAAAAT+AGG + Chr3:48513383-48513402 None:intergenic 25.0%
! TTGGAAAAACATAATCAGTA+TGG - Chr3:48510858-48510877 MsG0380013959.01.T01:intron 25.0%
! TTTCTACCACTATGTTAATA+CGG + Chr3:48513457-48513476 None:intergenic 25.0%
! TTTGCTGACAATTATTTGTT+TGG + Chr3:48513258-48513277 None:intergenic 25.0%
!! AAAATTAGTCTATCCATAAG+AGG + Chr3:48513892-48513911 None:intergenic 25.0%
!! ACATTAAGAACTTTTCATAC+TGG - Chr3:48511614-48511633 MsG0380013959.01.T01:intron 25.0%
!! ACTAATAGAAAACTTTTTGG+TGG + Chr3:48511818-48511837 None:intergenic 25.0%
!! ACTTTTGGTACAAAAGAAAA+GGG - Chr3:48512199-48512218 MsG0380013959.01.T01:intron 25.0%
!! ATGGAAGCTTTAACTATTTA+TGG + Chr3:48514467-48514486 None:intergenic 25.0%
!! CTTTTAACAATACCTTCTAA+AGG - Chr3:48510798-48510817 MsG0380013959.01.T01:intron 25.0%
!! TATAATGAAAAAAGTGCAGT+TGG - Chr3:48513671-48513690 MsG0380013959.01.T01:intron 25.0%
!! TGAACAACAAAGTTCTATTT+TGG - Chr3:48510839-48510858 MsG0380013959.01.T01:intron 25.0%
!! TGGAAGCTTTAACTATTTAT+GGG + Chr3:48514466-48514485 None:intergenic 25.0%
!!! AAATCTATTTCTTCGTCTTT+TGG + Chr3:48512320-48512339 None:intergenic 25.0%
!!! AATACATATTGTTTTTTCCG+TGG + Chr3:48514374-48514393 None:intergenic 25.0%
!!! ATCCATAAATGACTTGTTTT+TGG + Chr3:48512022-48512041 None:intergenic 25.0%
!!! ATGTCTAATGTATTTTTACC+CGG - Chr3:48515354-48515373 MsG0380013959.01.T01:CDS 25.0%
!!! ATTATATGGACTGGATTAAA+GGG + Chr3:48510987-48511006 None:intergenic 25.0%
!!! ATTTTATTTTTCCATTCGAG+GGG + Chr3:48511679-48511698 None:intergenic 25.0%
!!! CTTAAAGAGAATGTTGTTTT+AGG - Chr3:48515573-48515592 MsG0380013959.01.T01:CDS 25.0%
!!! TAAAGAGAATGTTGTTTTAG+GGG - Chr3:48515575-48515594 MsG0380013959.01.T01:CDS 25.0%
!!! TCTACTTTGATTTGGTATTT+TGG + Chr3:48512577-48512596 None:intergenic 25.0%
AAATCAATCATTTGTCCTTG+TGG + Chr3:48511083-48511102 None:intergenic 30.0%
AACTAATTGAATCCTTGTGT+CGG + Chr3:48513087-48513106 None:intergenic 30.0%
AACTAGTATCTACTTCTAAG+AGG + Chr3:48514139-48514158 None:intergenic 30.0%
AATAATAGTCTCGTTGGAAT+AGG - Chr3:48512661-48512680 MsG0380013959.01.T01:intron 30.0%
AATCTTCTTCCATAATGGTA+CGG - Chr3:48512638-48512657 MsG0380013959.01.T01:intron 30.0%
ACACAAGGATTCAATTAGTT+CGG - Chr3:48513087-48513106 MsG0380013959.01.T01:intron 30.0%
ACCATTGATAGGTATTTCAA+TGG + Chr3:48512404-48512423 None:intergenic 30.0%
ACTATTATTCCGTACCATTA+TGG + Chr3:48512650-48512669 None:intergenic 30.0%
ACTGCTACATCTATTTCATT+AGG - Chr3:48510765-48510784 MsG0380013959.01.T01:intron 30.0%
AGTCATTTATGGATCTTATC+AGG - Chr3:48512028-48512047 MsG0380013959.01.T01:intron 30.0%
ATAAATCTAAGTGTAGTGCT+AGG + Chr3:48513764-48513783 None:intergenic 30.0%
ATAATTGGATCTATGTCCAA+TGG - Chr3:48512880-48512899 MsG0380013959.01.T01:intron 30.0%
ATGGAAATGGAAAATCCATT+CGG - Chr3:48513054-48513073 MsG0380013959.01.T01:intron 30.0%
ATTATTGCTGGTCAATCTAT+TGG - Chr3:48511572-48511591 MsG0380013959.01.T01:intron 30.0%
ATTCAAAGCAATTTACGAGA+AGG - Chr3:48511107-48511126 MsG0380013959.01.T01:CDS 30.0%
ATTTCTGTAAATACCCGAAA+TGG - Chr3:48511290-48511309 MsG0380013959.01.T01:CDS 30.0%
CAATTTCCGTATTAACATAG+TGG - Chr3:48513448-48513467 MsG0380013959.01.T01:intron 30.0%
CACTATGTTAATACGGAAAT+TGG + Chr3:48513450-48513469 None:intergenic 30.0%
CATACCATATTTCAATGGAT+TGG + Chr3:48510911-48510930 None:intergenic 30.0%
CATATTTATTCTGACTCAGA+AGG - Chr3:48511929-48511948 MsG0380013959.01.T01:intron 30.0%
CCGAATGAAGAATAAATTGT+AGG - Chr3:48514267-48514286 MsG0380013959.01.T01:intron 30.0%
CGATGAAAAATAGGAAAAAC+AGG + Chr3:48513374-48513393 None:intergenic 30.0%
CTCCTGAAAAAGACATTATA+TGG + Chr3:48511001-48511020 None:intergenic 30.0%
GAAAAAGACATTATATGGAC+TGG + Chr3:48510996-48511015 None:intergenic 30.0%
GAGTGTATAACAAGAATTCT+CGG - Chr3:48515159-48515178 MsG0380013959.01.T01:CDS 30.0%
GATAAAGGATTTCTCCATAA+TGG + Chr3:48514993-48515012 None:intergenic 30.0%
GTAGCAGACGATATATATAT+CGG - Chr3:48511359-48511378 MsG0380013959.01.T01:CDS 30.0%
GTCGTTAGAAATCAAGATAT+TGG - Chr3:48511395-48511414 MsG0380013959.01.T01:CDS 30.0%
TACCATTATGGAAGAAGATT+CGG + Chr3:48512638-48512657 None:intergenic 30.0%
TACGGATCATTCTCATTTAA+TGG - Chr3:48512258-48512277 MsG0380013959.01.T01:intron 30.0%
TATACAAAAATTCGGATGCA+TGG + Chr3:48511982-48512001 None:intergenic 30.0%
TATGGAGAAATCCTTTATCA+AGG - Chr3:48514994-48515013 MsG0380013959.01.T01:CDS 30.0%
TCAAATAACATCCAAAGTCT+TGG - Chr3:48515317-48515336 MsG0380013959.01.T01:CDS 30.0%
TCAATTCCGCATTGTATAAA+AGG - Chr3:48513331-48513350 MsG0380013959.01.T01:intron 30.0%
TCCATTGAAATACCTATCAA+TGG - Chr3:48512400-48512419 MsG0380013959.01.T01:intron 30.0%
TCGAAAAAAGAATTGATGCT+TGG - Chr3:48515133-48515152 MsG0380013959.01.T01:CDS 30.0%
TGTAGCATACCATATTTCAA+TGG + Chr3:48510916-48510935 None:intergenic 30.0%
TTCAATATAAGAAGTCGAGT+AGG - Chr3:48512697-48512716 MsG0380013959.01.T01:intron 30.0%
TTTACAAAATCGATACTGTC+CGG + Chr3:48512966-48512985 None:intergenic 30.0%
! CTTTTCTTTGCTTCATTTAC+TGG + Chr3:48513838-48513857 None:intergenic 30.0%
! CTTTTGGTACAAAAGAAAAG+GGG - Chr3:48512200-48512219 MsG0380013959.01.T01:intron 30.0%
! GACTTTTGGTACAAAAGAAA+AGG - Chr3:48512198-48512217 MsG0380013959.01.T01:intron 30.0%
! GTCCATATAATGTCTTTTTC+AGG - Chr3:48510996-48511015 MsG0380013959.01.T01:CDS 30.0%
! GTGCATTATTCTTTTGAATC+CGG + Chr3:48515619-48515638 None:intergenic 30.0%
! TAACAATACCTTCTAAAGGA+TGG - Chr3:48510802-48510821 MsG0380013959.01.T01:intron 30.0%
! TCTAATATCTGTTCCACTTT+TGG + Chr3:48515081-48515100 None:intergenic 30.0%
! TCTCGTAAATTGCTTTGAAT+GGG + Chr3:48511107-48511126 None:intergenic 30.0%
! TCTCTATCAACCAAGAATTT+TGG + Chr3:48513535-48513554 None:intergenic 30.0%
! TTAAGAACTTTTCATACTGG+TGG - Chr3:48511617-48511636 MsG0380013959.01.T01:intron 30.0%
! TTCTCGTAAATTGCTTTGAA+TGG + Chr3:48511108-48511127 None:intergenic 30.0%
! TTTCTGGTATCATTCCATTT+CGG + Chr3:48511307-48511326 None:intergenic 30.0%
! TTTTTACCCGGTGAATTAAT+TGG - Chr3:48515366-48515385 MsG0380013959.01.T01:CDS 30.0%
!! AAAGTATCGTGAAAAATAGC+AGG + Chr3:48512286-48512305 None:intergenic 30.0%
!! AACATTGATTCTCTTTCTAC+TGG - Chr3:48512109-48512128 MsG0380013959.01.T01:intron 30.0%
!! ACGATATATATATCGGTTCA+CGG - Chr3:48511366-48511385 MsG0380013959.01.T01:CDS 30.0%
!! CATTATATGGACTGGATTAA+AGG + Chr3:48510988-48511007 None:intergenic 30.0%
!! GACTTGTTTAGTCTTGAATT+GGG - Chr3:48513109-48513128 MsG0380013959.01.T01:intron 30.0%
!! TAAGAGGTATCGTTCTTATA+GGG + Chr3:48514123-48514142 None:intergenic 30.0%
!! TGTTACCGAGCTTTATTATT+GGG - Chr3:48515435-48515454 MsG0380013959.01.T01:CDS 30.0%
!! TTATATGGACTGGATTAAAG+GGG + Chr3:48510986-48511005 None:intergenic 30.0%
!! TTGTTACCGAGCTTTATTAT+TGG - Chr3:48515434-48515453 MsG0380013959.01.T01:CDS 30.0%
!!! AAAGAGAATGTTGTTTTAGG+GGG - Chr3:48515576-48515595 MsG0380013959.01.T01:CDS 30.0%
!!! AATCCATTTTTTACTTCGCA+AGG - Chr3:48512072-48512091 MsG0380013959.01.T01:intron 30.0%
!!! ATTACTTAGTCTGGCTTTTA+TGG + Chr3:48514486-48514505 None:intergenic 30.0%
!!! CATTTTTTTTTTACCGTTCC+GGG + Chr3:48512840-48512859 None:intergenic 30.0%
!!! CCATTTTTTTTTTACCGTTC+CGG + Chr3:48512841-48512860 None:intergenic 30.0%
!!! TTTTATTTTTCCATTCGAGG+GGG + Chr3:48511678-48511697 None:intergenic 30.0%
AAAGAATAATGCACCGTTCA+CGG - Chr3:48515625-48515644 MsG0380013959.01.T01:CDS 35.0%
AAAGTCTTGGTTTCAGAAGA+TGG - Chr3:48515330-48515349 MsG0380013959.01.T01:CDS 35.0%
AAGACCTTGTGTTATATCAC+CGG + Chr3:48515058-48515077 None:intergenic 35.0%
AAGGGGGTTCGAATAAATAT+TGG + Chr3:48511461-48511480 None:intergenic 35.0%
AATATAAGAAGTCGAGTAGG+CGG - Chr3:48512700-48512719 MsG0380013959.01.T01:intron 35.0%
ACCATTATGGAAGAAGATTC+GGG + Chr3:48512637-48512656 None:intergenic 35.0%
AGTTTCTTGAAAACTCGCTT+CGG + Chr3:48515499-48515518 None:intergenic 35.0%
ATTCCAGGAAAGAGATAATC+TGG - Chr3:48513004-48513023 MsG0380013959.01.T01:intron 35.0%
ATTCCGCATTGTATAAAAGG+AGG - Chr3:48513334-48513353 MsG0380013959.01.T01:intron 35.0%
ATTGCGTCTAAACTTCAAAC+TGG - Chr3:48513486-48513505 MsG0380013959.01.T01:intron 35.0%
ATTTCAATGGAAACACCAGA+AGG + Chr3:48512391-48512410 None:intergenic 35.0%
CAATACAGAAGACAGAATTC+AGG - Chr3:48512466-48512485 MsG0380013959.01.T01:intron 35.0%
CATTGGACTAAATAAAGGGA+CGG - Chr3:48514220-48514239 MsG0380013959.01.T01:intron 35.0%
CCGGAACGGTAAAAAAAAAA+TGG - Chr3:48512838-48512857 MsG0380013959.01.T01:intron 35.0%
CGCTCATTGGACTAAATAAA+GGG - Chr3:48514216-48514235 MsG0380013959.01.T01:intron 35.0%
CTTAATGTTAGTTGAGTTCC+CGG + Chr3:48511602-48511621 None:intergenic 35.0%
GAATTCTGTCTTCTGTATTG+AGG + Chr3:48512466-48512485 None:intergenic 35.0%
GATCCTTGCGAAGTAAAAAA+TGG + Chr3:48512078-48512097 None:intergenic 35.0%
GGAATAGGAGAAACTTATCA+TGG + Chr3:48514663-48514682 None:intergenic 35.0%
GGGTAAAATATGCACTTCTT+CGG + Chr3:48512617-48512636 None:intergenic 35.0%
GGGTACTTTATTACTTAGTC+TGG + Chr3:48514495-48514514 None:intergenic 35.0%
GGTAAAATATGCACTTCTTC+GGG + Chr3:48512616-48512635 None:intergenic 35.0%
GTAACAAATTGCTTCTTCCA+AGG + Chr3:48515421-48515440 None:intergenic 35.0%
GTATCAAGATAGAACTGTGT+CGG + Chr3:48512815-48512834 None:intergenic 35.0%
TACGCCAATCCATTGAAATA+TGG - Chr3:48510904-48510923 MsG0380013959.01.T01:CDS 35.0%
TATCAAGATAGAACTGTGTC+GGG + Chr3:48512814-48512833 None:intergenic 35.0%
TCTTTCCTGGAATAGATCTT+GGG + Chr3:48512997-48513016 None:intergenic 35.0%
TCTTTCCTTCTTGAATCGAT+TGG + Chr3:48512354-48512373 None:intergenic 35.0%
TGGAAATGGAAAATCCATTC+GGG - Chr3:48513055-48513074 MsG0380013959.01.T01:intron 35.0%
TGGATCAAGTAAAGACTCTA+GGG - Chr3:48510730-48510749 MsG0380013959.01.T01:CDS 35.0%
TTCTGGTATCATTCCATTTC+GGG + Chr3:48511306-48511325 None:intergenic 35.0%
TTTAGTAAGAAGTCATTCGC+CGG - Chr3:48513628-48513647 MsG0380013959.01.T01:intron 35.0%
! AGCTTTAACTATTTATGGGC+TGG + Chr3:48514462-48514481 None:intergenic 35.0%
! ATAGGATTGAATGCGCTTTT+AGG - Chr3:48515781-48515800 MsG0380013959.01.T01:CDS 35.0%
! ATGAAAAAAGTGCAGTTGGT+TGG - Chr3:48513675-48513694 MsG0380013959.01.T01:intron 35.0%
! GAAGATTTCATTGAGTATCG+AGG - Chr3:48512535-48512554 MsG0380013959.01.T01:intron 35.0%
! TCTGGAAATATCCATTTTCC+CGG - Chr3:48512771-48512790 MsG0380013959.01.T01:intron 35.0%
! TGGTAATGCTCCAAAATTCT+TGG - Chr3:48513522-48513541 MsG0380013959.01.T01:intron 35.0%
!! AAACTGGTTAGCTTTAACCA+TGG - Chr3:48513502-48513521 MsG0380013959.01.T01:intron 35.0%
!! AACTTTGTTGTTCAGCATCT+TGG + Chr3:48510833-48510852 None:intergenic 35.0%
!! ATCTTCTGAAACCAAGACTT+TGG + Chr3:48515331-48515350 None:intergenic 35.0%
!! CTAAGAGGTATCGTTCTTAT+AGG + Chr3:48514124-48514143 None:intergenic 35.0%
!! GGACTTGTTTAGTCTTGAAT+TGG - Chr3:48513108-48513127 MsG0380013959.01.T01:intron 35.0%
!! TTAGTCTTGAATTGGGATCA+AGG - Chr3:48513116-48513135 MsG0380013959.01.T01:intron 35.0%
!!! AGAATTTTGGAGCATTACCA+TGG + Chr3:48513522-48513541 None:intergenic 35.0%
AACACAAGGTCTTCCAAAAG+TGG - Chr3:48515065-48515084 MsG0380013959.01.T01:CDS 40.0%
AAGAATTCTCGGCATTCCTT+GGG - Chr3:48515170-48515189 MsG0380013959.01.T01:CDS 40.0%
AAGATCGGCTAACCCATATT+TGG - Chr3:48514942-48514961 MsG0380013959.01.T01:CDS 40.0%
ACCCGAATCTTCTTCCATAA+TGG - Chr3:48512633-48512652 MsG0380013959.01.T01:intron 40.0%
ACGTATTCCTACAGGTAAAG+GGG + Chr3:48511478-48511497 None:intergenic 40.0%
AGACGTATTCCTACAGGTAA+AGG + Chr3:48511480-48511499 None:intergenic 40.0%
AGATCCGGTGATATAACACA+AGG - Chr3:48515051-48515070 MsG0380013959.01.T01:CDS 40.0%
AGCGCAAAGTCGTATTTCTT+TGG - Chr3:48515221-48515240 MsG0380013959.01.T01:CDS 40.0%
AGTTCTATCTTGATACCACC+CGG - Chr3:48512819-48512838 MsG0380013959.01.T01:intron 40.0%
ATAGCAGCAATGAAAGTCCA+CGG - Chr3:48514354-48514373 MsG0380013959.01.T01:intron 40.0%
ATCCTCTCATTCCGACTAAT+TGG + Chr3:48511049-48511068 None:intergenic 40.0%
ATTATGGATGTGTACTCCCT+GGG + Chr3:48515274-48515293 None:intergenic 40.0%
ATTCCTTGGGGATTCTTGAT+TGG - Chr3:48515183-48515202 MsG0380013959.01.T01:CDS 40.0%
CAAAAGGTTTATCGATCCCA+GGG - Chr3:48515255-48515274 MsG0380013959.01.T01:CDS 40.0%
CAATGAATCGCGAAATGCTA+TGG - Chr3:48513571-48513590 MsG0380013959.01.T01:intron 40.0%
CATAGCATTTCGCGATTCAT+TGG + Chr3:48513573-48513592 None:intergenic 40.0%
CCTTCTTGAATCGATTGGAA+TGG + Chr3:48512349-48512368 None:intergenic 40.0%
CTAAATAAAGGGACGGAAGA+AGG - Chr3:48514227-48514246 MsG0380013959.01.T01:intron 40.0%
CTAGAAAAACGTGCATGATC+CGG + Chr3:48513650-48513669 None:intergenic 40.0%
CTAGAGTCTTTACTTGATCC+AGG + Chr3:48510731-48510750 None:intergenic 40.0%
CTCTTTCCTGGAATAGATCT+TGG + Chr3:48512998-48513017 None:intergenic 40.0%
CTGGATCAAGTAAAGACTCT+AGG - Chr3:48510729-48510748 MsG0380013959.01.T01:CDS 40.0%
CTTTCCTGGAATAGATCTTG+GGG + Chr3:48512996-48513015 None:intergenic 40.0%
GAAGCAGAGGACAAAATAAG+GGG + Chr3:48514515-48514534 None:intergenic 40.0%
GAAGCTGTAGGTATTATTGC+TGG - Chr3:48511560-48511579 MsG0380013959.01.T01:intron 40.0%
GACGTATTCCTACAGGTAAA+GGG + Chr3:48511479-48511498 None:intergenic 40.0%
GCGCTCATTGGACTAAATAA+AGG - Chr3:48514215-48514234 MsG0380013959.01.T01:intron 40.0%
GGAAATGGAAAATCCATTCG+GGG - Chr3:48513056-48513075 MsG0380013959.01.T01:intron 40.0%
GGAAGCAGAGGACAAAATAA+GGG + Chr3:48514516-48514535 None:intergenic 40.0%
GGATTAATGTCAGATCCACA+AGG - Chr3:48511065-48511084 MsG0380013959.01.T01:CDS 40.0%
GGGTCAGTCATCCTAAAATT+AGG + Chr3:48510966-48510985 None:intergenic 40.0%
GTACGGAATAATAGTCTCGT+TGG - Chr3:48512655-48512674 MsG0380013959.01.T01:intron 40.0%
GTTCCAGATTATCTCTTTCC+TGG + Chr3:48513010-48513029 None:intergenic 40.0%
TAGATGTAGCAGTAGCTTGA+CGG + Chr3:48510758-48510777 None:intergenic 40.0%
TATGATCGCATCTCCTCTTA+TGG - Chr3:48513876-48513895 MsG0380013959.01.T01:intron 40.0%
TATTATGGATGTGTACTCCC+TGG + Chr3:48515275-48515294 None:intergenic 40.0%
TCAGTATGGGAATGTACATG+CGG - Chr3:48510872-48510891 MsG0380013959.01.T01:intron 40.0%
TCTCAAGTGCACCAATTAGT+CGG - Chr3:48511035-48511054 MsG0380013959.01.T01:CDS 40.0%
TTACCTGTAGGAATACGTCT+TGG - Chr3:48511480-48511499 MsG0380013959.01.T01:CDS 40.0%
TTCTCCATAATGGCCATGAA+TGG + Chr3:48514983-48515002 None:intergenic 40.0%
! ACGCCTCCTTTTATACAATG+CGG + Chr3:48513340-48513359 None:intergenic 40.0%
! ATACTGGTGGAGTATTCACA+GGG - Chr3:48511630-48511649 MsG0380013959.01.T01:intron 40.0%
! CCATTCCAATCGATTCAAGA+AGG - Chr3:48512346-48512365 MsG0380013959.01.T01:intron 40.0%
! TAAAAGTATATGTTCCCGCG+CGG + Chr3:48511886-48511905 None:intergenic 40.0%
! TATATTGCGTTGACCGTGAA+CGG + Chr3:48515641-48515660 None:intergenic 40.0%
! TCTTGGTAGTTGTGATCCAT+TGG + Chr3:48512899-48512918 None:intergenic 40.0%
! TCTTTTGAATCCGGTACCAA+CGG + Chr3:48515610-48515629 None:intergenic 40.0%
! TTTTAGCAAAAGCCGCTCTT+CGG - Chr3:48515526-48515545 MsG0380013959.01.T01:CDS 40.0%
! TTTTCCCCAAGATCTATTCC+AGG - Chr3:48512989-48513008 MsG0380013959.01.T01:intron 40.0%
!! GGTCGTATTGATTGGTTGAA+AGG - Chr3:48515549-48515568 MsG0380013959.01.T01:CDS 40.0%
!!! ATGTCTTTTTCAGGAGCTAG+AGG - Chr3:48511005-48511024 MsG0380013959.01.T01:CDS 40.0%
!!! CTTATTTTGTCCTCTGCTTC+CGG - Chr3:48514515-48514534 MsG0380013959.01.T01:intron 40.0%
!!! TTTTTTTTTACCGTTCCGGG+TGG + Chr3:48512837-48512856 None:intergenic 40.0%
AACGAACTAATGCGACCTTC+TGG - Chr3:48512373-48512392 MsG0380013959.01.T01:intron 45.0%
ACAGAAGCAGCAGAAATCAG+TGG - Chr3:48514635-48514654 MsG0380013959.01.T01:CDS 45.0%
ACTCAGAAGGCGAAATGCAT+TGG - Chr3:48511942-48511961 MsG0380013959.01.T01:intron 45.0%
AGAATTCTCGGCATTCCTTG+GGG - Chr3:48515171-48515190 MsG0380013959.01.T01:CDS 45.0%
AGTATCCACAACCCCTTTAC+GGG + Chr3:48511171-48511190 None:intergenic 45.0%
ATCCATGACGTGTACGTGTA+GGG + Chr3:48511721-48511740 None:intergenic 45.0%
CAAGAATTCTCGGCATTCCT+TGG - Chr3:48515169-48515188 MsG0380013959.01.T01:CDS 45.0%
CACCAATTAGTCGGAATGAG+AGG - Chr3:48511044-48511063 MsG0380013959.01.T01:CDS 45.0%
CAGTATCCACAACCCCTTTA+CGG + Chr3:48511172-48511191 None:intergenic 45.0%
CCAAAAGGTTTATCGATCCC+AGG - Chr3:48515254-48515273 MsG0380013959.01.T01:CDS 45.0%
CGGAAGCAGAGGACAAAATA+AGG + Chr3:48514517-48514536 None:intergenic 45.0%
CGTATTCCTACAGGTAAAGG+GGG + Chr3:48511477-48511496 None:intergenic 45.0%
GATATCTTATCCCTCTCTCC+GGG + Chr3:48512792-48512811 None:intergenic 45.0%
GATCCAAGACGTATTCCTAC+AGG + Chr3:48511486-48511505 None:intergenic 45.0%
GCAACCATTCATGGCCATTA+TGG - Chr3:48514976-48514995 MsG0380013959.01.T01:CDS 45.0%
GGATATCTTATCCCTCTCTC+CGG + Chr3:48512793-48512812 None:intergenic 45.0%
GGCATATACATCACACATCC+TGG - Chr3:48510710-48510729 MsG0380013959.01.T01:CDS 45.0%
GGTATCAAACCCGAAACTTC+CGG - Chr3:48513805-48513824 MsG0380013959.01.T01:intron 45.0%
GTAGAATTGGGAGAAGCTGT+AGG - Chr3:48511548-48511567 MsG0380013959.01.T01:CDS 45.0%
GTTGTACGTCGAACAGATTG+CGG - Chr3:48511254-48511273 MsG0380013959.01.T01:CDS 45.0%
TATCCATGACGTGTACGTGT+AGG + Chr3:48511722-48511741 None:intergenic 45.0%
TATCTTGATACCACCCGGAA+CGG - Chr3:48512824-48512843 MsG0380013959.01.T01:intron 45.0%
TATTGCGAGCAGAACGAACT+GGG - Chr3:48515391-48515410 MsG0380013959.01.T01:CDS 45.0%
TCTTATCAGGAAAGTCGTGC+AGG - Chr3:48512041-48512060 MsG0380013959.01.T01:intron 45.0%
TGGTCAATCTATTGGCGAAC+CGG - Chr3:48511580-48511599 MsG0380013959.01.T01:intron 45.0%
TTATTGCGAGCAGAACGAAC+TGG - Chr3:48515390-48515409 MsG0380013959.01.T01:CDS 45.0%
TTCGGATGCATGGTACACAT+CGG + Chr3:48511972-48511991 None:intergenic 45.0%
TTTAGCAAAAGCCGCTCTTC+GGG - Chr3:48515527-48515546 MsG0380013959.01.T01:CDS 45.0%
! ATATCCATTTTCCCGGAGAG+AGG - Chr3:48512778-48512797 MsG0380013959.01.T01:intron 45.0%
! CATACTGGTGGAGTATTCAC+AGG - Chr3:48511629-48511648 MsG0380013959.01.T01:intron 45.0%
! CCTGGGATCGATAAACCTTT+TGG + Chr3:48515257-48515276 None:intergenic 45.0%
! CTTTTGAATCCGGTACCAAC+GGG + Chr3:48515609-48515628 None:intergenic 45.0%
! GGATCTGCCGATTGTGTTAT+GGG - Chr3:48511501-48511520 MsG0380013959.01.T01:CDS 45.0%
! TACTGGTGGAGTATTCACAG+GGG - Chr3:48511631-48511650 MsG0380013959.01.T01:intron 45.0%
! TATCCATTTTCCCGGAGAGA+GGG - Chr3:48512779-48512798 MsG0380013959.01.T01:intron 45.0%
! TGGATCTGCCGATTGTGTTA+TGG - Chr3:48511500-48511519 MsG0380013959.01.T01:CDS 45.0%
!! TAAATAAAGGGGGCGCTCAT+TGG - Chr3:48514203-48514222 MsG0380013959.01.T01:intron 45.0%
!! TACACGTCGACTTGTTGAAG+TGG - Chr3:48511220-48511239 MsG0380013959.01.T01:CDS 45.0%
!! TGGACTAGCCATCCTTTAGA+AGG + Chr3:48510813-48510832 None:intergenic 45.0%
AACCCATATTTGGCGACTCC+AGG - Chr3:48514952-48514971 MsG0380013959.01.T01:CDS 50.0%
AAGAAGTCGAGTAGGCGGAT+TGG - Chr3:48512705-48512724 MsG0380013959.01.T01:intron 50.0%
ACAGATTGCGGTACGATTCG+CGG - Chr3:48511266-48511285 MsG0380013959.01.T01:CDS 50.0%
ACTCCAGGAGCAACCATTCA+TGG - Chr3:48514967-48514986 MsG0380013959.01.T01:CDS 50.0%
ATCAAACCCGAAACTTCCGG+CGG - Chr3:48513808-48513827 MsG0380013959.01.T01:intron 50.0%
ATCAATACGACCCCGAAGAG+CGG + Chr3:48515541-48515560 None:intergenic 50.0%
ATGGGCGGAGTCCTATTCAT+GGG - Chr3:48511519-48511538 MsG0380013959.01.T01:CDS 50.0%
CAGCTTCTCCCAATTCTACC+AGG + Chr3:48511547-48511566 None:intergenic 50.0%
CATGGGGACCTGGTAGAATT+GGG - Chr3:48511536-48511555 MsG0380013959.01.T01:CDS 50.0%
CTCCTGGAGTCGCCAAATAT+GGG + Chr3:48514957-48514976 None:intergenic 50.0%
CTGCAGGTCAAGCTGTAGAA+GGG + Chr3:48514553-48514572 None:intergenic 50.0%
CTGCTTCTGTTATCGCTGCT+GGG + Chr3:48514625-48514644 None:intergenic 50.0%
GACTCCGCCCATAACACAAT+CGG + Chr3:48511511-48511530 None:intergenic 50.0%
GCACCAATCAAGAATCCCCA+AGG + Chr3:48515189-48515208 None:intergenic 50.0%
GCTGTACGAACATCAGATGC+TGG - Chr3:48511191-48511210 MsG0380013959.01.T01:CDS 50.0%
GCTTCTATTGGACCTGGAGT+TGG + Chr3:48514587-48514606 None:intergenic 50.0%
GGAATGATACCCGTTGGTAC+CGG - Chr3:48515597-48515616 MsG0380013959.01.T01:CDS 50.0%
GGTCAATCTATTGGCGAACC+GGG - Chr3:48511581-48511600 MsG0380013959.01.T01:intron 50.0%
TATCCCTCTCTCCGGGAAAA+TGG + Chr3:48512785-48512804 None:intergenic 50.0%
TATGGGCGGAGTCCTATTCA+TGG - Chr3:48511518-48511537 MsG0380013959.01.T01:CDS 50.0%
TCATGGGGACCTGGTAGAAT+TGG - Chr3:48511535-48511554 MsG0380013959.01.T01:CDS 50.0%
TCCAATAGAAGCAAGCCCGA+CGG - Chr3:48514595-48514614 MsG0380013959.01.T01:CDS 50.0%
TCTACCAGGTCCCCATGAAT+AGG + Chr3:48511533-48511552 None:intergenic 50.0%
TGTGTCGGAAATTCCCCGAA+TGG + Chr3:48513072-48513091 None:intergenic 50.0%
TTAGCAAAAGCCGCTCTTCG+GGG - Chr3:48515528-48515547 MsG0380013959.01.T01:CDS 50.0%
TTAGGGGGAATGATACCCGT+TGG - Chr3:48515591-48515610 MsG0380013959.01.T01:CDS 50.0%
TTCATTTACTGGCCATCCGC+CGG + Chr3:48513827-48513846 None:intergenic 50.0%
TTCGAACCCCCTTTACCTGT+AGG - Chr3:48511468-48511487 MsG0380013959.01.T01:CDS 50.0%
TTCGGGGAATTTCCGACACA+AGG - Chr3:48513072-48513091 MsG0380013959.01.T01:intron 50.0%
TTCTGTTATCGCTGCTGGGT+TGG + Chr3:48514621-48514640 None:intergenic 50.0%
! ACTGGTGGAGTATTCACAGG+GGG - Chr3:48511632-48511651 MsG0380013959.01.T01:intron 50.0%
! ATTGGACCTGGAGTTGGTCA+AGG + Chr3:48514581-48514600 None:intergenic 50.0%
! CTCTTCGGGGTCGTATTGAT+TGG - Chr3:48515541-48515560 MsG0380013959.01.T01:CDS 50.0%
! TCTGCCGATTGTGTTATGGG+CGG - Chr3:48511504-48511523 MsG0380013959.01.T01:CDS 50.0%
!! AGTATTCACAGGGGGTACTG+CGG - Chr3:48511640-48511659 MsG0380013959.01.T01:intron 50.0%
AGAAGGGATTGCGCGACAAC+CGG + Chr3:48514537-48514556 None:intergenic 55.0%
AGTGATTGCTGAGATCCGCG+CGG - Chr3:48511868-48511887 MsG0380013959.01.T01:intron 55.0%
CACCCTACACGTACACGTCA+TGG - Chr3:48511716-48511735 MsG0380013959.01.T01:intron 55.0%
CAGATTGCGGTACGATTCGC+GGG - Chr3:48511267-48511286 MsG0380013959.01.T01:CDS 55.0%
CTTGCTACGGAGCCCGTAAA+GGG - Chr3:48511156-48511175 MsG0380013959.01.T01:CDS 55.0%
GAGTCCTATTCATGGGGACC+TGG - Chr3:48511526-48511545 MsG0380013959.01.T01:CDS 55.0%
GCTCCTGGAGTCGCCAAATA+TGG + Chr3:48514958-48514977 None:intergenic 55.0%
GCTGCAGGTCAAGCTGTAGA+AGG + Chr3:48514554-48514573 None:intergenic 55.0%
GCTGCTTCTGTTATCGCTGC+TGG + Chr3:48514626-48514645 None:intergenic 55.0%
GCTGTACCTTGACCAACTCC+AGG - Chr3:48514572-48514591 MsG0380013959.01.T01:CDS 55.0%
GTTGGTCAAGGTACAGCTGC+AGG + Chr3:48514569-48514588 None:intergenic 55.0%
TCTTGCTACGGAGCCCGTAA+AGG - Chr3:48511155-48511174 MsG0380013959.01.T01:CDS 55.0%
TGGCCATGAATGGTTGCTCC+TGG + Chr3:48514973-48514992 None:intergenic 55.0%
TGGGCGGAGTCCTATTCATG+GGG - Chr3:48511520-48511539 MsG0380013959.01.T01:CDS 55.0%
TTGCTACGGAGCCCGTAAAG+GGG - Chr3:48511157-48511176 MsG0380013959.01.T01:CDS 55.0%
! GGGCTTGCTTCTATTGGACC+TGG + Chr3:48514593-48514612 None:intergenic 55.0%
AACCCGAAACTTCCGGCGGA+TGG - Chr3:48513812-48513831 MsG0380013959.01.T01:intron 60.0%
AGAACGAACTGGGCGTGCCT+TGG - Chr3:48515401-48515420 MsG0380013959.01.T01:CDS 60.0%
GTGATTGCTGAGATCCGCGC+GGG - Chr3:48511869-48511888 MsG0380013959.01.T01:intron 60.0%
TATGTGCGAGCCCCCTCGAA+TGG - Chr3:48511665-48511684 MsG0380013959.01.T01:intron 60.0%
TGGCCATCCGCCGGAAGTTT+CGG + Chr3:48513818-48513837 None:intergenic 60.0%
! GCCGTCGGGCTTGCTTCTAT+TGG + Chr3:48514599-48514618 None:intergenic 60.0%
CGGAGCCCGTAAAGGGGTTG+TGG - Chr3:48511163-48511182 MsG0380013959.01.T01:CDS 65.0%
GGCCATCCGCCGGAAGTTTC+GGG + Chr3:48513817-48513836 None:intergenic 65.0%
TGCGCGACAACCGGAAGCAG+AGG + Chr3:48514528-48514547 None:intergenic 65.0%
!! ATCGCTGCTGGGTTGGCCGT+CGG + Chr3:48514614-48514633 None:intergenic 65.0%
!! TCGCTGCTGGGTTGGCCGTC+GGG + Chr3:48514613-48514632 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48510708 48515840 48510708 ID=MsG0380013959.01;Name=MsG0380013959.01
Chr3 mRNA 48510708 48515840 48510708 ID=MsG0380013959.01.T01;Parent=MsG0380013959.01;Name=MsG0380013959.01.T01;_AED=0.50;_eAED=0.51;_QI=0|0|0|1|0|0.33|3|0|676
Chr3 exon 48514547 48515840 48514547 ID=MsG0380013959.01.T01:exon:9205;Parent=MsG0380013959.01.T01
Chr3 exon 48510902 48511574 48510902 ID=MsG0380013959.01.T01:exon:9204;Parent=MsG0380013959.01.T01
Chr3 exon 48510708 48510771 48510708 ID=MsG0380013959.01.T01:exon:9203;Parent=MsG0380013959.01.T01
Chr3 CDS 48514547 48515840 48514547 ID=MsG0380013959.01.T01:cds;Parent=MsG0380013959.01.T01
Chr3 CDS 48510902 48511574 48510902 ID=MsG0380013959.01.T01:cds;Parent=MsG0380013959.01.T01
Chr3 CDS 48510708 48510771 48510708 ID=MsG0380013959.01.T01:cds;Parent=MsG0380013959.01.T01
Gene Sequence

>MsG0380013959.01.T01

ATGGCATATACATCACACATCCTGGATCAAGTAAAGACTCTAGGGTTCCGTCAAGCTACTGCTACATCTATTTCATTAGGAATTGATGATCTTTTAACAATACCTTCTAAAGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTCTATTTTGGAAAAACATAATCAGTATGGGAATGTACATGCGGTAGAAAAATTACGCCAATCCATTGAAATATGGTATGCTACAAGCGAATATTTGCGACAAGAAATGAATCCTAATTTTAGGATGACTGACCCCTTTAATCCAGTCCATATAATGTCTTTTTCAGGAGCTAGAGGAAATGCATCTCAAGTGCACCAATTAGTCGGAATGAGAGGATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGAGAAGGACTGTCTTTAACAGAATATATAATTTCTTGCTACGGAGCCCGTAAAGGGGTTGTGGATACTGCTGTACGAACATCAGATGCTGGATATCTTACACGTCGACTTGTTGAAGTGGTTCAACACATTGTTGTACGTCGAACAGATTGCGGTACGATTCGCGGGATTTCTGTAAATACCCGAAATGGAATGATACCAGAAAGAATTTTGATACAAACATTAATTGGTCGTGTAGTAGCAGACGATATATATATCGGTTCACGGTGCATTGTCGTTAGAAATCAAGATATTGGAATTGGACTTATCAATCGATTCATAACTTTTCAAACACAACCAATATTTATTCGAACCCCCTTTACCTGTAGGAATACGTCTTGGATCTGCCGATTGTGTTATGGGCGGAGTCCTATTCATGGGGACCTGGTAGAATTGGGAGAAGCTGTAGGTATTATTGCTGGTCAATCTATTGGCGAACCGGGAACTCAACTAACATTAAGAACTTTTCATACTGGTGGAGTATTCACAGGGGGTACTGCGGAATATGTGCGAGCCCCCTCGAATGGAAAAATAAAATTTAATGAAGATTTAGTTCACCCTACACGTACACGTCATGGATATCCTGCTTTTATATGTAATATAGACTTGTATGTAACTATTGAAAGTGACGATATTATACATAACGTGATTATTCCACCAAAAAGTTTTCTATTAGTTCAAAATGATCAATATGTAAAATCAGAACAAGTGATTGCTGAGATCCGCGCGGGAACATATACTTTTAATTTGAAAGAAAGGGTTCGAAAACATATTTATTCTGACTCAGAAGGCGAAATGCATTGGAGTACCGATGTGTACCATGCATCCGAATTTTTGTATAGAGCAACCATTCATGGCCATTATGGAGAAATCCTTTATCAAGGAGATATTTTAGTTACATTCATATATGAAAAATCGAGATCCGGTGATATAACACAAGGTCTTCCAAAAGTGGAACAGATATTAGAAATACGTTCGATTGATTCAATATCGATGAATCTCGAAAAAAGAATTGATGCTTGGAATGAGTGTATAACAAGAATTCTCGGCATTCCTTGGGGATTCTTGATTGGTGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAATAAAATCCAAAAGGTTTATCGATCCCAGGGAGTACACATCCATAATAGACATATCGAAATTATTGTTCGTCAAATAACATCCAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTATTTTTACCCGGTGAATTAATTGGATTATTGCGAGCAGAACGAACTGGGCGTGCCTTGGAAGAAGCAATTTGTTACCGAGCTTTATTATTGGGAATAACAAAAACATCTCTGAATACTCAAAGTTTCATATCCGAAGCGAGTTTTCAAGAAACTGCTAGAGTTTTAGCAAAAGCCGCTCTTCGGGGTCGTATTGATTGGTTGAAAGGTCTTAAAGAGAATGTTGTTTTAGGGGGAATGATACCCGTTGGTACCGGATTCAAAAGAATAATGCACCGTTCACGAAATATAGGATTGAATGCGCTTTTAGGAAGCATTCAATTCATCCCTTTAAATGCAGTCATTTGA

Protein sequence

>MsG0380013959.01.T01

MAYTSHILDQVKTLGFRQATATSISLGIDDLLTIPSKGWLVQDAEQQSSILEKHNQYGNVHAVEKLRQSIEIWYATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRRLVEVVQHIVVRRTDCGTIRGISVNTRNGMIPERILIQTLIGRVVADDIYIGSRCIVVRNQDIGIGLINRFITFQTQPIFIRTPFTCRNTSWICRLCYGRSPIHGDLVELGEAVGIIAGQSIGEPGTQLTLRTFHTGGVFTGGTAEYVRAPSNGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTIESDDIIHNVIIPPKSFLLVQNDQYVKSEQVIAEIRAGTYTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYRATIHGHYGEILYQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERTGRALEEAICYRALLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKRIMHRSRNIGLNALLGSIQFIPLNAVI*