AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380013918.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013918.01.T01 MTR_0002s0550 90.609 394 37 0 1 394 1 394 0.0 711
MsG0380013918.01.T01 MTR_0212s0040 64.750 400 132 1 3 393 4 403 1.30e-178 521
MsG0380013918.01.T01 MTR_2g020310 91.803 183 15 0 79 261 48 230 9.26e-114 333
MsG0380013918.01.T01 MTR_2g008350 91.379 174 15 0 221 394 2 175 6.48e-112 331
MsG0380013918.01.T01 MTR_4g079170 96.748 123 4 0 1 123 1 123 3.90e-75 231
MsG0380013918.01.T01 MTR_3g108400 85.897 78 11 0 281 358 14 91 9.12e-41 140
MsG0380013918.01.T01 MTR_1g112870 28.492 358 230 7 87 421 84 438 1.44e-29 120
MsG0380013918.01.T01 MTR_7g081010 30.132 302 192 5 87 371 83 382 5.52e-29 119
MsG0380013918.01.T01 MTR_1g109420 90.323 62 6 0 31 92 161 222 5.75e-29 113
MsG0380013918.01.T01 MTR_4g044667 83.582 67 11 0 36 102 324 390 7.07e-26 108
MsG0380013918.01.T01 MTR_3g108390 72.581 62 12 1 219 280 1 57 4.21e-24 95.5
MsG0380013918.01.T01 MTR_4g005410 28.679 265 163 8 126 372 210 466 1.54e-16 82.4
MsG0380013918.01.T01 MTR_1g108765 24.633 341 226 7 54 367 98 434 2.13e-15 78.6
MsG0380013918.01.T01 MTR_1g108770 24.340 341 227 7 54 367 101 437 2.35e-15 78.6
MsG0380013918.01.T01 MTR_7g033765 25.994 327 226 7 79 395 83 403 7.56e-15 77.0
MsG0380013918.01.T01 MTR_7g021780 25.994 327 226 7 79 395 83 403 8.19e-15 77.0
MsG0380013918.01.T01 MTR_4g451275 25.688 327 227 6 79 395 83 403 1.01e-14 76.3
MsG0380013918.01.T01 MTR_0002s0650 25.382 327 228 7 79 395 83 403 1.06e-14 76.6
MsG0380013918.01.T01 MTR_3g035730 25.994 327 226 7 79 395 83 403 2.51e-14 75.1
MsG0380013918.01.T01 MTR_2g066870 27.044 318 192 9 98 395 29 326 5.30e-13 70.9
MsG0380013918.01.T01 MTR_7g117920 26.872 227 155 5 79 296 83 307 4.09e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380013918.01.T01 ATCG00120 95.939 394 16 0 1 394 1 394 0.0 762
MsG0380013918.01.T01 ATMG01190 62.060 398 142 1 5 393 6 403 3.33e-176 502
MsG0380013918.01.T01 AT2G07698 62.060 398 142 1 5 393 276 673 6.19e-173 504
MsG0380013918.01.T01 AT4G38510 30.464 302 191 5 87 371 90 389 2.30e-30 123
MsG0380013918.01.T01 AT4G38510 30.464 302 191 5 87 371 83 382 2.32e-30 122
MsG0380013918.01.T01 AT4G38510 30.464 302 191 5 87 371 83 382 2.32e-30 122
MsG0380013918.01.T01 AT4G38510 30.464 302 191 5 87 371 83 382 2.32e-30 122
MsG0380013918.01.T01 AT4G38510 30.464 302 191 5 87 371 83 382 2.32e-30 122
MsG0380013918.01.T01 AT1G76030 28.571 357 230 7 87 421 82 435 2.12e-29 120
MsG0380013918.01.T01 AT1G20260 29.703 303 193 5 87 371 82 382 1.40e-28 117
MsG0380013918.01.T01 AT5G08690 26.370 292 201 4 86 367 147 434 9.91e-18 85.9
MsG0380013918.01.T01 AT5G08670 26.370 292 201 4 86 367 147 434 1.10e-17 85.9
MsG0380013918.01.T01 AT5G08680 26.370 292 201 4 86 367 150 437 1.27e-17 85.5
MsG0380013918.01.T01 AT1G78900 28.679 265 163 8 126 372 209 465 1.55e-16 82.4
MsG0380013918.01.T01 AT1G78900 28.679 265 163 8 126 372 209 465 1.55e-16 82.4
MsG0380013918.01.T01 ATCG00480 24.149 323 231 5 83 395 85 403 4.67e-13 71.2

Find 106 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCAGTAAGTGAGGGTTATT+TGG 0.166311 3:+48385939 MsG0380013918.01.T01:CDS
TGTAGGCATTGCTTTGAATT+TGG 0.201612 3:+48385825 MsG0380013918.01.T01:CDS
GACGGCATTGCTCGTATTTA+TGG 0.205588 3:+48385754 MsG0380013918.01.T01:CDS
CACTATTCTGATATTCAAAT+TGG 0.206286 3:-48386899 None:intergenic
CCCAAATAACCCTCACTTAC+TGG 0.241036 3:-48385940 None:intergenic
TTATTTACATTCTCGTCTTT+TGG 0.245014 3:+48386521 MsG0380013918.01.T01:CDS
AAATGTTGGTGTTGTATTAA+TGG 0.258988 3:+48385855 MsG0380013918.01.T01:CDS
GGCCAGCGAGAATTAATTAT+TGG 0.267680 3:+48386132 MsG0380013918.01.T01:CDS
GGTAGCTGGTAAATTAAAAT+TGG 0.278592 3:+48386779 MsG0380013918.01.T01:CDS
TCTCGCTGGCCACGCCCTAT+AGG 0.298734 3:-48386120 None:intergenic
GCCAGAGCTGCACCTGTATA+AGG 0.317929 3:-48386363 None:intergenic
CTCGCTGGCCACGCCCTATA+GGG 0.318797 3:-48386119 None:intergenic
TTTACCAGCTACCTGTTTCA+TGG 0.322039 3:-48386769 None:intergenic
ATTGATTCTATGATCCCTAT+AGG 0.359827 3:+48386105 MsG0380013918.01.T01:CDS
GCGATAAGCCTGTGCTTGTT+TGG 0.364708 3:-48386439 None:intergenic
GCCAGCGAGAATTAATTATT+GGG 0.365780 3:+48386133 MsG0380013918.01.T01:CDS
CCTGATTGGGTCTCAACTAT+TGG 0.368964 3:-48386597 None:intergenic
TGGTAAATTAAAATTGGAAT+TGG 0.382867 3:+48386785 MsG0380013918.01.T01:CDS
ATTTCTCCTCGACCATCAAT+AGG 0.391542 3:-48385988 None:intergenic
AATGTTGGTGTTGTATTAAT+GGG 0.391664 3:+48385856 MsG0380013918.01.T01:CDS
TCCTTATACAGGTGCAGCTC+TGG 0.392160 3:+48386362 MsG0380013918.01.T01:CDS
GCCCTAGCTAAACCTATTGA+TGG 0.393369 3:+48385976 MsG0380013918.01.T01:CDS
CCAATAGTTGAGACCCAATC+AGG 0.395916 3:+48386597 MsG0380013918.01.T01:CDS
AGATACAATTCTCAATCAAC+AGG 0.401486 3:+48386188 MsG0380013918.01.T01:CDS
GGATATAGTTATGATTCAAT+AGG 0.402295 3:+48386921 MsG0380013918.01.T01:CDS
TCAAATTAAAGCCATGAAAC+AGG 0.408465 3:+48386758 MsG0380013918.01.T01:CDS
CCGGGATACGCTTCGCGACC+TGG 0.409309 3:-48386489 None:intergenic
AAGCTGAAACATCTCCTGAT+TGG 0.409535 3:-48386611 None:intergenic
GCTAAATTAAGTTCTCAGTT+AGG 0.415873 3:+48386552 MsG0380013918.01.T01:CDS
CCAGTAAGTGAGGGTTATTT+GGG 0.424091 3:+48385940 MsG0380013918.01.T01:CDS
ATTATTGGGGACAGACAAAC+AGG 0.427629 3:+48386147 MsG0380013918.01.T01:CDS
AAATATTTGGCCATCTGTAA+TGG 0.434228 3:-48386655 None:intergenic
TTGATTCTATGATCCCTATA+GGG 0.437674 3:+48386106 MsG0380013918.01.T01:CDS
AGGCTCATACACGGAACGTC+TGG 0.440884 3:-48386061 None:intergenic
GGTATTTCCGTTTCCAGAGT+TGG 0.443512 3:+48386726 MsG0380013918.01.T01:CDS
GTAATGGAAATTACATTAGT+AGG 0.444650 3:-48386639 None:intergenic
ATATGTGTTTATGTAGCTAT+TGG 0.445393 3:+48386222 MsG0380013918.01.T01:CDS
TTCGTAATAGAAGAGACATT+TGG 0.452176 3:-48386461 None:intergenic
AGCTGAAACATCTCCTGATT+GGG 0.452206 3:-48386610 None:intergenic
GGAAGTTCGGTAAAAGCAAC+AGG 0.457398 3:+48385901 MsG0380013918.01.T01:CDS
ATAAGCCTGTGCTTGTTTGG+AGG 0.462375 3:-48386436 None:intergenic
CAATACCTCGCTCCTTATAC+AGG 0.462710 3:+48386351 MsG0380013918.01.T01:CDS
CGTGTATGAGCCTCTTCAAA+CGG 0.465005 3:+48386071 MsG0380013918.01.T01:CDS
CAATTTGAATATCAGAATAG+TGG 0.475895 3:+48386900 MsG0380013918.01.T01:CDS
TCGAGGAGAAATTTCAGCTT+CGG 0.476522 3:+48385999 MsG0380013918.01.T01:CDS
CCAGGTCGCGAAGCGTATCC+CGG 0.478786 3:+48386489 MsG0380013918.01.T01:CDS
TAGTTATGATTCAATAGGTT+AGG 0.482185 3:+48386926 MsG0380013918.01.T01:CDS
TAACTGAGAACTTAATTTAG+CGG 0.485288 3:-48386550 None:intergenic
CGCCGATCCAACTCTGGAAA+CGG 0.485937 3:-48386733 None:intergenic
TATATTGCTCAATACGTTCA+CGG 0.487151 3:-48385684 None:intergenic
AAATTTCAGCTTCGGAATCT+CGG 0.492871 3:+48386007 MsG0380013918.01.T01:CDS
GCGAGGTATTGTAATGTAGC+TGG 0.497569 3:-48386339 None:intergenic
TTCCGTTTCCAGAGTTGGAT+CGG 0.499691 3:+48386731 MsG0380013918.01.T01:CDS
GGTGTTGTATTAATGGGTGA+TGG 0.501676 3:+48385862 MsG0380013918.01.T01:CDS
ACTAATTTCATCTGCACGAA+TGG 0.507471 3:-48385653 None:intergenic
TCTGCCGATCTATTCAATGC+TGG 0.509351 3:+48386681 MsG0380013918.01.T01:CDS
GCTGATACAAGAGGGAAGTT+CGG 0.510716 3:+48385888 MsG0380013918.01.T01:CDS
GTGTATGAGCCTCTTCAAAC+GGG 0.511475 3:+48386072 MsG0380013918.01.T01:CDS
GTAACTACTTTACAAGAAAG+AGG 0.516144 3:+48386273 MsG0380013918.01.T01:CDS
TGATTAAAGTGTGACGTTCA+CGG 0.516487 3:-48386401 None:intergenic
TTGAGCCGCCGATCCAACTC+TGG 0.524235 3:-48386739 None:intergenic
TAAGCCTGTGCTTGTTTGGA+GGG 0.526272 3:-48386435 None:intergenic
TTAATCGAATCTCCCGCTCC+CGG 0.527597 3:+48386030 MsG0380013918.01.T01:CDS
GAAATACCCACATTAATAGC+TGG 0.538501 3:-48386711 None:intergenic
TTATGGTCTTGATGAAGTAA+TGG 0.538951 3:+48385771 MsG0380013918.01.T01:CDS
CCCCAATAATTAATTCTCGC+TGG 0.539649 3:-48386134 None:intergenic
GGAACGTCTGGAAATAATAC+CGG 0.540181 3:-48386049 None:intergenic
TTTACAAGAAAGAGGGGCAA+TGG 0.541624 3:+48386281 MsG0380013918.01.T01:CDS
GACCATCAATAGGTTTAGCT+AGG 0.542268 3:-48385978 None:intergenic
AATGGAGTACACTATTATAG+TGG 0.544433 3:+48386299 MsG0380013918.01.T01:CDS
AGCATCTTCTGTGGCTCAAG+TGG 0.546125 3:+48386251 MsG0380013918.01.T01:CDS
AATGTAATTTCCATTACAGA+TGG 0.557336 3:+48386645 MsG0380013918.01.T01:CDS
AAAGCCATGAAACAGGTAGC+TGG 0.558354 3:+48386765 MsG0380013918.01.T01:CDS
TTAAGTTCTCAGTTAGGTGA+AGG 0.563580 3:+48386558 MsG0380013918.01.T01:CDS
CTGGAAATAATACCGGGAGC+GGG 0.565141 3:-48386042 None:intergenic
CGATCCCTCCAAACAAGCAC+AGG 0.574680 3:+48386431 MsG0380013918.01.T01:CDS
TGCTCAGATACCAGTAAGTG+AGG 0.577261 3:+48385930 MsG0380013918.01.T01:CDS
TAACTACTTTACAAGAAAGA+GGG 0.578222 3:+48386274 MsG0380013918.01.T01:CDS
TGAATTAGTCGAATTTGAAG+AGG 0.580561 3:+48385798 MsG0380013918.01.T01:CDS
TCTGGAAATAATACCGGGAG+CGG 0.583040 3:-48386043 None:intergenic
GCAATAAGTCCCGTTTGAAG+AGG 0.589598 3:-48386081 None:intergenic
ACAGGTACTGTACTTCAAGT+AGG 0.592569 3:+48385730 MsG0380013918.01.T01:CDS
GAATTTGAAGAGGGTACTGT+AGG 0.593991 3:+48385808 MsG0380013918.01.T01:CDS
CTTCTATTACGAAGACCACC+AGG 0.597315 3:+48386471 MsG0380013918.01.T01:CDS
ACCATCAATAGGTTTAGCTA+GGG 0.601516 3:-48385977 None:intergenic
ATCAGACCAGCTATTAATGT+GGG 0.604091 3:+48386705 MsG0380013918.01.T01:CDS
GAATTAGTCGAATTTGAAGA+GGG 0.619600 3:+48385799 MsG0380013918.01.T01:CDS
TAGAAATGAAATTCGAACAG+TGG 0.620634 3:-48386875 None:intergenic
GCTAAACCTATTGATGGTCG+AGG 0.620970 3:+48385982 MsG0380013918.01.T01:CDS
GAACGTCTGGAAATAATACC+GGG 0.622363 3:-48386048 None:intergenic
AATCAGACCAGCTATTAATG+TGG 0.625394 3:+48386704 MsG0380013918.01.T01:CDS
GATTCCAGCATTGAATAGAT+CGG 0.626418 3:-48386685 None:intergenic
TCTATGATCCCTATAGGGCG+TGG 0.628110 3:+48386111 MsG0380013918.01.T01:CDS
AACTACTTTACAAGAAAGAG+GGG 0.635218 3:+48386275 MsG0380013918.01.T01:CDS
CCAGCGAGAATTAATTATTG+GGG 0.636830 3:+48386134 MsG0380013918.01.T01:CDS
GGTCTTGATGAAGTAATGGC+AGG 0.640111 3:+48385775 MsG0380013918.01.T01:CDS
GCAGAATTAGAAGATTCTTG+CGG 0.648908 3:+48386816 MsG0380013918.01.T01:CDS
CGTTTGAAGAGGCTCATACA+CGG 0.655862 3:-48386070 None:intergenic
CGTTTCCAGAGTTGGATCGG+CGG 0.663289 3:+48386734 MsG0380013918.01.T01:CDS
GATGGTTTGCTGATACAAGA+GGG 0.671964 3:+48385880 MsG0380013918.01.T01:CDS
GCTCAGATACCAGTAAGTGA+GGG 0.673181 3:+48385931 MsG0380013918.01.T01:CDS
TGATGGTTTGCTGATACAAG+AGG 0.676056 3:+48385879 MsG0380013918.01.T01:CDS
CTGCACCTGTATAAGGAGCG+AGG 0.679934 3:-48386356 None:intergenic
ACTGTACTTCAAGTAGGCGA+CGG 0.682410 3:+48385736 MsG0380013918.01.T01:CDS
GGATACGCTTCGCGACCTGG+TGG 0.699302 3:-48386486 None:intergenic
GATACAATTCTCAATCAACA+GGG 0.744742 3:+48386189 MsG0380013918.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGTATTTACAATTTTTACTT+CGG - Chr3:48385713-48385732 None:intergenic 15.0%
!! ATGTAAATAAAAAACATCTC+CGG - Chr3:48386511-48386530 None:intergenic 20.0%
!! GAAGTAAAAATTGTAAATAC+AGG + Chr3:48385712-48385731 MsG0380013918.01.T01:CDS 20.0%
!! TGGTAAATTAAAATTGGAAT+TGG + Chr3:48386785-48386804 MsG0380013918.01.T01:CDS 20.0%
!!! TTTTTAATATCTCTTTCGTT+CGG - Chr3:48386845-48386864 None:intergenic 20.0%
! AATGTAATTTCCATTACAGA+TGG + Chr3:48386645-48386664 MsG0380013918.01.T01:CDS 25.0%
! ATATGTGTTTATGTAGCTAT+TGG + Chr3:48386222-48386241 MsG0380013918.01.T01:CDS 25.0%
! CAATTTGAATATCAGAATAG+TGG + Chr3:48386900-48386919 MsG0380013918.01.T01:CDS 25.0%
! CACTATTCTGATATTCAAAT+TGG - Chr3:48386902-48386921 None:intergenic 25.0%
! GGATATAGTTATGATTCAAT+AGG + Chr3:48386921-48386940 MsG0380013918.01.T01:CDS 25.0%
! TAACTACTTTACAAGAAAGA+GGG + Chr3:48386274-48386293 MsG0380013918.01.T01:CDS 25.0%
! TAACTGAGAACTTAATTTAG+CGG - Chr3:48386553-48386572 None:intergenic 25.0%
! TGTAAATAAAAAACATCTCC+GGG - Chr3:48386510-48386529 None:intergenic 25.0%
!! AATTTGGAATCCAAAAATGT+TGG + Chr3:48385841-48385860 MsG0380013918.01.T01:CDS 25.0%
!! GTAATGGAAATTACATTAGT+AGG - Chr3:48386642-48386661 None:intergenic 25.0%
!! TAATACAACACCAACATTTT+TGG - Chr3:48385854-48385873 None:intergenic 25.0%
!! TTATTTACATTCTCGTCTTT+TGG + Chr3:48386521-48386540 MsG0380013918.01.T01:CDS 25.0%
!!! AAATGTTGGTGTTGTATTAA+TGG + Chr3:48385855-48385874 MsG0380013918.01.T01:CDS 25.0%
!!! AATGTTGGTGTTGTATTAAT+GGG + Chr3:48385856-48385875 MsG0380013918.01.T01:CDS 25.0%
AAATATTTGGCCATCTGTAA+TGG - Chr3:48386658-48386677 None:intergenic 30.0%
AACTACTTTACAAGAAAGAG+GGG + Chr3:48386275-48386294 MsG0380013918.01.T01:CDS 30.0%
AATGGAGTACACTATTATAG+TGG + Chr3:48386299-48386318 MsG0380013918.01.T01:CDS 30.0%
AGATACAATTCTCAATCAAC+AGG + Chr3:48386188-48386207 MsG0380013918.01.T01:CDS 30.0%
GAATTAGTCGAATTTGAAGA+GGG + Chr3:48385799-48385818 MsG0380013918.01.T01:CDS 30.0%
GATACAATTCTCAATCAACA+GGG + Chr3:48386189-48386208 MsG0380013918.01.T01:CDS 30.0%
GATCGGCAGATAAAAATATT+TGG - Chr3:48386671-48386690 None:intergenic 30.0%
GCTAAATTAAGTTCTCAGTT+AGG + Chr3:48386552-48386571 MsG0380013918.01.T01:CDS 30.0%
GGTAGCTGGTAAATTAAAAT+TGG + Chr3:48386779-48386798 MsG0380013918.01.T01:CDS 30.0%
GTAACTACTTTACAAGAAAG+AGG + Chr3:48386273-48386292 MsG0380013918.01.T01:CDS 30.0%
TAGAAATGAAATTCGAACAG+TGG - Chr3:48386878-48386897 None:intergenic 30.0%
TATATTGCTCAATACGTTCA+CGG - Chr3:48385687-48385706 None:intergenic 30.0%
TCAAATTAAAGCCATGAAAC+AGG + Chr3:48386758-48386777 MsG0380013918.01.T01:CDS 30.0%
TGAATTAGTCGAATTTGAAG+AGG + Chr3:48385798-48385817 MsG0380013918.01.T01:CDS 30.0%
TTCGTAATAGAAGAGACATT+TGG - Chr3:48386464-48386483 None:intergenic 30.0%
TTGATTCTATGATCCCTATA+GGG + Chr3:48386106-48386125 MsG0380013918.01.T01:CDS 30.0%
! ATTGATTCTATGATCCCTAT+AGG + Chr3:48386105-48386124 MsG0380013918.01.T01:CDS 30.0%
! TTATGGTCTTGATGAAGTAA+TGG + Chr3:48385771-48385790 MsG0380013918.01.T01:CDS 30.0%
AAATTTCAGCTTCGGAATCT+CGG + Chr3:48386007-48386026 MsG0380013918.01.T01:CDS 35.0%
AATCAGACCAGCTATTAATG+TGG + Chr3:48386704-48386723 MsG0380013918.01.T01:CDS 35.0%
ACCATCAATAGGTTTAGCTA+GGG - Chr3:48385980-48385999 None:intergenic 35.0%
ACTAATTTCATCTGCACGAA+TGG - Chr3:48385656-48385675 None:intergenic 35.0%
ATCAGACCAGCTATTAATGT+GGG + Chr3:48386705-48386724 MsG0380013918.01.T01:CDS 35.0%
CCAGCGAGAATTAATTATTG+GGG + Chr3:48386134-48386153 MsG0380013918.01.T01:CDS 35.0%
GAAATACCCACATTAATAGC+TGG - Chr3:48386714-48386733 None:intergenic 35.0%
GCAGAATTAGAAGATTCTTG+CGG + Chr3:48386816-48386835 MsG0380013918.01.T01:CDS 35.0%
GCCAGCGAGAATTAATTATT+GGG + Chr3:48386133-48386152 MsG0380013918.01.T01:CDS 35.0%
TGATTAAAGTGTGACGTTCA+CGG - Chr3:48386404-48386423 None:intergenic 35.0%
TTAAGTTCTCAGTTAGGTGA+AGG + Chr3:48386558-48386577 MsG0380013918.01.T01:CDS 35.0%
! GATTCCAGCATTGAATAGAT+CGG - Chr3:48386688-48386707 None:intergenic 35.0%
! TGTAGGCATTGCTTTGAATT+TGG + Chr3:48385825-48385844 MsG0380013918.01.T01:CDS 35.0%
AAGCTGAAACATCTCCTGAT+TGG - Chr3:48386614-48386633 None:intergenic 40.0%
ACCAGTAAGTGAGGGTTATT+TGG + Chr3:48385939-48385958 MsG0380013918.01.T01:CDS 40.0%
AGCTGAAACATCTCCTGATT+GGG - Chr3:48386613-48386632 None:intergenic 40.0%
ATTATTGGGGACAGACAAAC+AGG + Chr3:48386147-48386166 MsG0380013918.01.T01:CDS 40.0%
ATTTCTCCTCGACCATCAAT+AGG - Chr3:48385991-48386010 None:intergenic 40.0%
CCAGTAAGTGAGGGTTATTT+GGG + Chr3:48385940-48385959 MsG0380013918.01.T01:CDS 40.0%
CCCCAATAATTAATTCTCGC+TGG - Chr3:48386137-48386156 None:intergenic 40.0%
GAACGTCTGGAAATAATACC+GGG - Chr3:48386051-48386070 None:intergenic 40.0%
GACCATCAATAGGTTTAGCT+AGG - Chr3:48385981-48386000 None:intergenic 40.0%
GGAACGTCTGGAAATAATAC+CGG - Chr3:48386052-48386071 None:intergenic 40.0%
GGCCAGCGAGAATTAATTAT+TGG + Chr3:48386132-48386151 MsG0380013918.01.T01:CDS 40.0%
TCGAGGAGAAATTTCAGCTT+CGG + Chr3:48385999-48386018 MsG0380013918.01.T01:CDS 40.0%
TTTACAAGAAAGAGGGGCAA+TGG + Chr3:48386281-48386300 MsG0380013918.01.T01:CDS 40.0%
TTTACCAGCTACCTGTTTCA+TGG - Chr3:48386772-48386791 None:intergenic 40.0%
! ACAGGTACTGTACTTCAAGT+AGG + Chr3:48385730-48385749 MsG0380013918.01.T01:CDS 40.0%
! GGTGTTGTATTAATGGGTGA+TGG + Chr3:48385862-48385881 MsG0380013918.01.T01:CDS 40.0%
!! GAATTTGAAGAGGGTACTGT+AGG + Chr3:48385808-48385827 MsG0380013918.01.T01:CDS 40.0%
!! GATGGTTTGCTGATACAAGA+GGG + Chr3:48385880-48385899 MsG0380013918.01.T01:CDS 40.0%
!! TGATGGTTTGCTGATACAAG+AGG + Chr3:48385879-48385898 MsG0380013918.01.T01:CDS 40.0%
!! TGGTCAAAAAGCATCTTCTG+TGG + Chr3:48386242-48386261 MsG0380013918.01.T01:CDS 40.0%
AAAGCCATGAAACAGGTAGC+TGG + Chr3:48386765-48386784 MsG0380013918.01.T01:CDS 45.0%
ACTGTACTTCAAGTAGGCGA+CGG + Chr3:48385736-48385755 MsG0380013918.01.T01:CDS 45.0%
ATAAGCCTGTGCTTGTTTGG+AGG - Chr3:48386439-48386458 None:intergenic 45.0%
CAATACCTCGCTCCTTATAC+AGG + Chr3:48386351-48386370 MsG0380013918.01.T01:CDS 45.0%
CCAATAGTTGAGACCCAATC+AGG + Chr3:48386597-48386616 MsG0380013918.01.T01:CDS 45.0%
CCCAAATAACCCTCACTTAC+TGG - Chr3:48385943-48385962 None:intergenic 45.0%
CCTGATTGGGTCTCAACTAT+TGG - Chr3:48386600-48386619 None:intergenic 45.0%
CGTGTATGAGCCTCTTCAAA+CGG + Chr3:48386071-48386090 MsG0380013918.01.T01:CDS 45.0%
CGTTTGAAGAGGCTCATACA+CGG - Chr3:48386073-48386092 None:intergenic 45.0%
CTTCTATTACGAAGACCACC+AGG + Chr3:48386471-48386490 MsG0380013918.01.T01:CDS 45.0%
GACGGCATTGCTCGTATTTA+TGG + Chr3:48385754-48385773 MsG0380013918.01.T01:CDS 45.0%
GCAATAAGTCCCGTTTGAAG+AGG - Chr3:48386084-48386103 None:intergenic 45.0%
GCCCTAGCTAAACCTATTGA+TGG + Chr3:48385976-48385995 MsG0380013918.01.T01:CDS 45.0%
GCTCAGATACCAGTAAGTGA+GGG + Chr3:48385931-48385950 MsG0380013918.01.T01:CDS 45.0%
GCTGATACAAGAGGGAAGTT+CGG + Chr3:48385888-48385907 MsG0380013918.01.T01:CDS 45.0%
GGAAGTTCGGTAAAAGCAAC+AGG + Chr3:48385901-48385920 MsG0380013918.01.T01:CDS 45.0%
GGTATTTCCGTTTCCAGAGT+TGG + Chr3:48386726-48386745 MsG0380013918.01.T01:CDS 45.0%
GGTCTTGATGAAGTAATGGC+AGG + Chr3:48385775-48385794 MsG0380013918.01.T01:CDS 45.0%
GTGTATGAGCCTCTTCAAAC+GGG + Chr3:48386072-48386091 MsG0380013918.01.T01:CDS 45.0%
TAAGCCTGTGCTTGTTTGGA+GGG - Chr3:48386438-48386457 None:intergenic 45.0%
TCTGCCGATCTATTCAATGC+TGG + Chr3:48386681-48386700 MsG0380013918.01.T01:CDS 45.0%
TCTGGAAATAATACCGGGAG+CGG - Chr3:48386046-48386065 None:intergenic 45.0%
TGCTCAGATACCAGTAAGTG+AGG + Chr3:48385930-48385949 MsG0380013918.01.T01:CDS 45.0%
TTCCGTTTCCAGAGTTGGAT+CGG + Chr3:48386731-48386750 MsG0380013918.01.T01:CDS 45.0%
! GCTAAACCTATTGATGGTCG+AGG + Chr3:48385982-48386001 MsG0380013918.01.T01:CDS 45.0%
!! GCGAGGTATTGTAATGTAGC+TGG - Chr3:48386342-48386361 None:intergenic 45.0%
AGCATCTTCTGTGGCTCAAG+TGG + Chr3:48386251-48386270 MsG0380013918.01.T01:CDS 50.0%
CTGGAAATAATACCGGGAGC+GGG - Chr3:48386045-48386064 None:intergenic 50.0%
GCGATAAGCCTGTGCTTGTT+TGG - Chr3:48386442-48386461 None:intergenic 50.0%
TCCTTATACAGGTGCAGCTC+TGG + Chr3:48386362-48386381 MsG0380013918.01.T01:CDS 50.0%
TCTATGATCCCTATAGGGCG+TGG + Chr3:48386111-48386130 MsG0380013918.01.T01:CDS 50.0%
TTAATCGAATCTCCCGCTCC+CGG + Chr3:48386030-48386049 MsG0380013918.01.T01:CDS 50.0%
AGGCTCATACACGGAACGTC+TGG - Chr3:48386064-48386083 None:intergenic 55.0%
CGATCCCTCCAAACAAGCAC+AGG + Chr3:48386431-48386450 MsG0380013918.01.T01:CDS 55.0%
CGTTTCCAGAGTTGGATCGG+CGG + Chr3:48386734-48386753 MsG0380013918.01.T01:CDS 55.0%
CTGCACCTGTATAAGGAGCG+AGG - Chr3:48386359-48386378 None:intergenic 55.0%
GCCAGAGCTGCACCTGTATA+AGG - Chr3:48386366-48386385 None:intergenic 55.0%
! CGCCGATCCAACTCTGGAAA+CGG - Chr3:48386736-48386755 None:intergenic 55.0%
TTGAGCCGCCGATCCAACTC+TGG - Chr3:48386742-48386761 None:intergenic 60.0%
CCAGGTCGCGAAGCGTATCC+CGG + Chr3:48386489-48386508 MsG0380013918.01.T01:CDS 65.0%
CTCGCTGGCCACGCCCTATA+GGG - Chr3:48386122-48386141 None:intergenic 65.0%
GGATACGCTTCGCGACCTGG+TGG - Chr3:48386489-48386508 None:intergenic 65.0%
TCTCGCTGGCCACGCCCTAT+AGG - Chr3:48386123-48386142 None:intergenic 65.0%
CCGGGATACGCTTCGCGACC+TGG - Chr3:48386492-48386511 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 48385646 48386947 48385646 ID=MsG0380013918.01;Name=MsG0380013918.01
Chr3 mRNA 48385646 48386947 48385646 ID=MsG0380013918.01.T01;Parent=MsG0380013918.01;Name=MsG0380013918.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|433
Chr3 exon 48385646 48386947 48385646 ID=MsG0380013918.01.T01:exon:8489;Parent=MsG0380013918.01.T01
Chr3 CDS 48385646 48386947 48385646 ID=MsG0380013918.01.T01:cds;Parent=MsG0380013918.01.T01
Gene Sequence

>MsG0380013918.01.T01

ATGGTAACCATTCGTGCAGATGAAATTAGTAAAATTATCCGTGAACGTATTGAGCAATATAATACCGAAGTAAAAATTGTAAATACAGGTACTGTACTTCAAGTAGGCGACGGCATTGCTCGTATTTATGGTCTTGATGAAGTAATGGCAGGTGAATTAGTCGAATTTGAAGAGGGTACTGTAGGCATTGCTTTGAATTTGGAATCCAAAAATGTTGGTGTTGTATTAATGGGTGATGGTTTGCTGATACAAGAGGGAAGTTCGGTAAAAGCAACAGGAAGAATTGCTCAGATACCAGTAAGTGAGGGTTATTTGGGTCGTGTTGTAAATGCCCTAGCTAAACCTATTGATGGTCGAGGAGAAATTTCAGCTTCGGAATCTCGGTTAATCGAATCTCCCGCTCCCGGTATTATTTCCAGACGTTCCGTGTATGAGCCTCTTCAAACGGGACTTATTGCTATTGATTCTATGATCCCTATAGGGCGTGGCCAGCGAGAATTAATTATTGGGGACAGACAAACAGGTAAAACAGCAGTAGCAACAGATACAATTCTCAATCAACAGGGACAAAATGTAATATGTGTTTATGTAGCTATTGGTCAAAAAGCATCTTCTGTGGCTCAAGTGGTAACTACTTTACAAGAAAGAGGGGCAATGGAGTACACTATTATAGTGGCTGAAACAGCAAATTCTCCAGCTACATTACAATACCTCGCTCCTTATACAGGTGCAGCTCTGGCTGAATATTTTATGTACCGTGAACGTCACACTTTAATCATTTATGACGATCCCTCCAAACAAGCACAGGCTTATCGCCAAATGTCTCTTCTATTACGAAGACCACCAGGTCGCGAAGCGTATCCCGGAGATGTTTTTTATTTACATTCTCGTCTTTTGGAAAGAGCCGCTAAATTAAGTTCTCAGTTAGGTGAAGGAAGTATGACTGCTTTACCAATAGTTGAGACCCAATCAGGAGATGTTTCAGCTTATATTCCTACTAATGTAATTTCCATTACAGATGGCCAAATATTTTTATCTGCCGATCTATTCAATGCTGGAATCAGACCAGCTATTAATGTGGGTATTTCCGTTTCCAGAGTTGGATCGGCGGCTCAAATTAAAGCCATGAAACAGGTAGCTGGTAAATTAAAATTGGAATTGGCACAATTCGCAGAATTAGAAGATTCTTGCGGAGTCCGAACGAAAGAGATATTAAAAACAAAAAAGATCCACTGTTCGAATTTCATTTCTATCCAATTTGAATATCAGAATAGTGGATATAGTTATGATTCAATAGGTTAG

Protein sequence

>MsG0380013918.01.T01

MVTIRADEISKIIRERIEQYNTEVKIVNTGTVLQVGDGIARIYGLDEVMAGELVEFEEGTVGIALNLESKNVGVVLMGDGLLIQEGSSVKATGRIAQIPVSEGYLGRVVNALAKPIDGRGEISASESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTTLQERGAMEYTIIVAETANSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDPSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQLGEGSMTALPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEDSCGVRTKEILKTKKIHCSNFISIQFEYQNSGYSYDSIG*