AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380014332.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014332.01.T01 MTR_3g055240 98.431 510 8 0 1 510 1 510 0.0 1036
MsG0380014332.01.T01 MTR_7g024860 57.117 562 189 6 1 510 1 562 0.0 604
MsG0380014332.01.T01 MTR_7g024867 57.117 562 189 6 1 510 1 562 0.0 604
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380014332.01.T01 AT1G04950 54.430 553 205 6 1 510 1 549 0.0 573
MsG0380014332.01.T01 AT1G04950 54.430 553 205 6 1 510 1 549 0.0 573
MsG0380014332.01.T01 AT1G04950 54.430 553 205 6 1 510 1 549 0.0 573
MsG0380014332.01.T01 AT1G54360 46.442 534 252 5 3 510 1 526 4.38e-153 447
MsG0380014332.01.T01 AT1G54360 46.442 534 252 5 3 510 15 540 6.33e-153 447

Find 106 sgRNAs with CRISPR-Local

Find 371 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCAGTGTTTGAATTATT+TGG 0.119225 3:-53021709 MsG0380014332.01.T01:CDS
AATATAAATGCTTGAGGTTT+TGG 0.170554 3:+53021664 None:intergenic
GACATTTCTTCATACTTTCT+TGG 0.212884 3:-53023160 MsG0380014332.01.T01:CDS
TTTATGTATCAGCCGATATA+TGG 0.283600 3:-53025002 MsG0380014332.01.T01:intron
GCAACAAAGCGTGTGAAATA+TGG 0.294734 3:+53024129 None:intergenic
TTACTTGCATTGTTGCAAAA+AGG 0.295236 3:-53023595 MsG0380014332.01.T01:CDS
GTCGTTATTACATGTTTAAC+AGG 0.301820 3:+53024352 None:intergenic
TTTGCTTATACTTCCAAATC+TGG 0.307028 3:-53022778 MsG0380014332.01.T01:CDS
TGAAAATATGGCTCCAGATT+TGG 0.309235 3:+53022765 None:intergenic
ATTACTTCAATTGATTCCTT+TGG 0.312719 3:+53027043 None:intergenic
GCTCCGCACAAGGCGCATTA+AGG 0.343837 3:+53023954 None:intergenic
AAAGCTCTGCCTCAACATTA+TGG 0.347585 3:-53023129 MsG0380014332.01.T01:CDS
CTGATAATCATTGGGAGCTT+AGG 0.354924 3:-53023556 MsG0380014332.01.T01:CDS
TGTAATAACGACGGAGCTTC+AGG 0.355301 3:-53024341 MsG0380014332.01.T01:intron
GAACCGAGGAGGATCGTTAG+AGG 0.363403 3:+53024974 None:intergenic
ACTTGCATTGAGGAATTTAG+AGG 0.367286 3:-53026784 MsG0380014332.01.T01:intron
TAATTTGCAACAGGTGGTAC+TGG 0.375326 3:-53021931 MsG0380014332.01.T01:intron
GCAAGTATACGGAGCCTTGC+TGG 0.379476 3:-53022679 MsG0380014332.01.T01:intron
CAAGAAGCATGGCAAGTATA+CGG 0.391715 3:-53022690 MsG0380014332.01.T01:CDS
TTTGTTCTACATTCATGATA+AGG 0.392916 3:-53024928 MsG0380014332.01.T01:CDS
GGCTCAAGTAGATGAAAATA+TGG 0.405849 3:+53022753 None:intergenic
TGCAACAATGCAAGTAATGA+TGG 0.408615 3:+53023601 None:intergenic
GTTATAAGAGAATAAATAAC+AGG 0.412649 3:+53021549 None:intergenic
TTCCTCTTCCATTCTAGCTC+AGG 0.413485 3:-53021767 MsG0380014332.01.T01:CDS
TGATAATCATTGGGAGCTTA+GGG 0.413902 3:-53023555 MsG0380014332.01.T01:CDS
CATACCTGACATTGCAATCA+TGG 0.422201 3:+53022339 None:intergenic
CTTCCAAGCCTGAGCTAGAA+TGG 0.423482 3:+53021759 None:intergenic
ACAGACTGTCTGATAATCAT+TGG 0.424035 3:-53023565 MsG0380014332.01.T01:CDS
TCAACTGACATGGAATTCAT+TGG 0.433720 3:+53021898 None:intergenic
ATTCTGAATATAAAGAAGAT+AGG 0.434394 3:-53024396 MsG0380014332.01.T01:CDS
CGTCGGCATGTCATCATCAA+TGG 0.441161 3:-53021818 MsG0380014332.01.T01:CDS
CTTGAAGTAGCACGACTTTG+AGG 0.445011 3:+53022376 None:intergenic
CTTCCATTCTAGCTCAGGCT+TGG 0.448030 3:-53021762 MsG0380014332.01.T01:CDS
TAATGATGGGCGGCATCAAT+TGG 0.449880 3:+53023615 None:intergenic
AACAGGTGGTACTGGGGTTG+TGG 0.453827 3:-53021923 MsG0380014332.01.T01:intron
CATTCTAGCTCAGGCTTGGA+AGG 0.460488 3:-53021758 MsG0380014332.01.T01:CDS
GACTGGTAATTGATGTATCA+AGG 0.462094 3:+53024749 None:intergenic
CGTGTGAAATATGGAACTAA+AGG 0.476356 3:+53024138 None:intergenic
AATTTGCAACAGGTGGTACT+GGG 0.477769 3:-53021930 MsG0380014332.01.T01:intron
AGTCACTGGTTGGCTATTGA+AGG 0.477862 3:-53024730 MsG0380014332.01.T01:CDS
GATGTATCAAGGGGTGCTTT+CGG 0.481110 3:+53024760 None:intergenic
TAAGAAAAGTTCTCATAGAA+TGG 0.486637 3:+53026829 None:intergenic
TAGAAGAGCATTGGTTACCT+TGG 0.491722 3:-53024181 MsG0380014332.01.T01:CDS
AGGCCAAAATATGCATGAAA+AGG 0.495373 3:-53022425 MsG0380014332.01.T01:CDS
ATCAAAGGAATAGCAGCTCT+TGG 0.495915 3:-53023102 MsG0380014332.01.T01:CDS
GAAGTAATTGCACAAACCCT+TGG 0.498511 3:-53027028 MsG0380014332.01.T01:CDS
CGAATGCGATATTCAAGATC+GGG 0.508044 3:+53026965 None:intergenic
GTTACCTTGGCAACTGACTC+AGG 0.510102 3:-53024168 MsG0380014332.01.T01:CDS
CACACGCTTTGTTGCTGATG+AGG 0.515440 3:-53024121 MsG0380014332.01.T01:intron
CAACATTATGGTGCAATCAA+AGG 0.519400 3:-53023117 MsG0380014332.01.T01:CDS
CAGACTGTCTGATAATCATT+GGG 0.519806 3:-53023564 MsG0380014332.01.T01:CDS
GTCGGCATGTCATCATCAAT+GGG 0.524510 3:-53021817 MsG0380014332.01.T01:CDS
AAGATAAATTGTTGATGCCA+AGG 0.527154 3:+53027011 None:intergenic
ATACATCAATTACCAGTCAC+TGG 0.528207 3:-53024744 MsG0380014332.01.T01:CDS
ACAGGTAATTTGATATCCAC+AGG 0.530063 3:+53024370 None:intergenic
TTCAATAGCCAACCAGTGAC+TGG 0.532008 3:+53024732 None:intergenic
TTAGAGGCGAAACCATATAT+CGG 0.532707 3:+53024990 None:intergenic
AGTGGATTTCCCACCATGAT+GGG 0.533896 3:-53021856 MsG0380014332.01.T01:CDS
CAAAGTCGTGCTACTTCAAG+TGG 0.535559 3:-53022373 MsG0380014332.01.T01:CDS
AGATAAATTGTTGATGCCAA+GGG 0.538663 3:+53027012 None:intergenic
AAGTGGATTTCCCACCATGA+TGG 0.538961 3:-53021857 MsG0380014332.01.T01:CDS
TGAAATATGGAACTAAAGGA+TGG 0.539111 3:+53024142 None:intergenic
AAAGCCATGATTGCAATGTC+AGG 0.540326 3:-53022343 MsG0380014332.01.T01:intron
TTGCCTTAATGCGCCTTGTG+CGG 0.540470 3:-53023957 MsG0380014332.01.T01:CDS
TCGCCTCTAACGATCCTCCT+CGG 0.544347 3:-53024977 MsG0380014332.01.T01:CDS
TTGTTGCTTTGATATGCAAA+AGG 0.547154 3:-53023517 MsG0380014332.01.T01:intron
TTGATACTGCACTTGCATTG+AGG 0.548470 3:-53026794 MsG0380014332.01.T01:CDS
CCCGAAAATGCTCCACCTGA+AGG 0.552810 3:-53024691 MsG0380014332.01.T01:intron
TGGAAGGATGACATAGATGC+AGG 0.555870 3:-53021742 MsG0380014332.01.T01:CDS
CGTGCTACTTCAAGTGGCAA+TGG 0.559774 3:-53022367 MsG0380014332.01.T01:CDS
AGCCTGAGCTAGAATGGAAG+AGG 0.562544 3:+53021765 None:intergenic
TCTAAATAATTACCTTCAGG+TGG 0.562609 3:+53024679 None:intergenic
GCAACAATGCAAGTAATGAT+GGG 0.563414 3:+53023602 None:intergenic
ACGAATGCGATATTCAAGAT+CGG 0.564445 3:+53026964 None:intergenic
ATCAATTACCAGTCACTGGT+TGG 0.567045 3:-53024740 MsG0380014332.01.T01:CDS
CAAGATCGGGTGAAAGAGCA+AGG 0.568699 3:+53026978 None:intergenic
TCGCATTCGTGAAATTATGC+AGG 0.568779 3:-53026951 MsG0380014332.01.T01:intron
TTTGCAAAAGGCTCCGCACA+AGG 0.569396 3:+53023944 None:intergenic
GGAGTTTCTAATTCAAGCGT+CGG 0.570994 3:-53021835 MsG0380014332.01.T01:CDS
TCAACCTTTCAGTGTGCAGT+AGG 0.579208 3:-53022445 MsG0380014332.01.T01:intron
ATGTCAGTTGACAACATGCA+AGG 0.583459 3:-53021886 MsG0380014332.01.T01:CDS
CTACATTCATGATAAGGATG+TGG 0.583655 3:-53024922 MsG0380014332.01.T01:CDS
TGAATTAGAAACTCCCATCA+TGG 0.588067 3:+53021843 None:intergenic
TCGCCAAATAATTCAAACAC+TGG 0.588099 3:+53021706 None:intergenic
GAGTCCTGAGTCAGTTGCCA+AGG 0.592638 3:+53024164 None:intergenic
TGAAAGAGCAAGGGCAACAT+CGG 0.594849 3:+53026988 None:intergenic
AACATGCAAGGGTCAACAAG+TGG 0.594931 3:-53021874 MsG0380014332.01.T01:CDS
CCTTATCATATCAGGTGGCA+CGG 0.603377 3:-53024005 MsG0380014332.01.T01:intron
GAAGATGAGTGTGATTCCAA+AGG 0.610466 3:-53027059 MsG0380014332.01.T01:exon
TAAAGTTCTATGTGTATGTG+AGG 0.610867 3:+53023919 None:intergenic
TTGATTGCACCATAATGTTG+AGG 0.615431 3:+53023120 None:intergenic
CCAAATAATTCAAACACTGG+TGG 0.618484 3:+53021709 None:intergenic
ACTGGTAATTGATGTATCAA+GGG 0.618685 3:+53024750 None:intergenic
ATATGAAAGTGCATGTAACT+CGG 0.619904 3:-53021603 MsG0380014332.01.T01:three_prime_UTR
TTGCATGTTGTCAACTGACA+TGG 0.620617 3:+53021888 None:intergenic
TTAGAAACTCCCATCATGGT+GGG 0.623900 3:+53021847 None:intergenic
TGTCAGTTGACAACATGCAA+GGG 0.627299 3:-53021885 MsG0380014332.01.T01:CDS
TAAAGAAGATAGGCTTCCTG+TGG 0.636549 3:-53024386 MsG0380014332.01.T01:CDS
ATTTGCAACAGGTGGTACTG+GGG 0.647286 3:-53021929 MsG0380014332.01.T01:intron
AAAATTACAACTCACCAGCA+AGG 0.647878 3:+53022665 None:intergenic
ATTAGAAACTCCCATCATGG+TGG 0.651189 3:+53021846 None:intergenic
TGTTAAACATGTAATAACGA+CGG 0.677117 3:-53024350 MsG0380014332.01.T01:CDS
AAGATCGGGTGAAAGAGCAA+GGG 0.679442 3:+53026979 None:intergenic
ACAATGCAAGTAATGATGGG+CGG 0.690762 3:+53023605 None:intergenic
AGAAATGTCTTTGTCACACG+TGG 0.715446 3:+53023174 None:intergenic
CTGGTAATTGATGTATCAAG+GGG 0.729319 3:+53024751 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTATA+GGG - Chr3:53023621-53023640 MsG0380014332.01.T01:CDS 0.0%
!!! TTTTTTTTTTTTTTTTTTAT+AGG - Chr3:53023620-53023639 MsG0380014332.01.T01:CDS 0.0%
!! ATTCATGTATTAAAATATAT+TGG + Chr3:53026540-53026559 None:intergenic 10.0%
!! TAAATTAAAAGATGAAAAAT+TGG + Chr3:53021814-53021833 None:intergenic 10.0%
!!! TATTTTTATTTTTTTTGAAC+AGG + Chr3:53021551-53021570 None:intergenic 10.0%
!! AAATAAGAAGAAATTAGTAA+GGG + Chr3:53024111-53024130 None:intergenic 15.0%
!! AGCAAAAAAATGAAATAAAA+AGG - Chr3:53025995-53026014 MsG0380014332.01.T01:intron 15.0%
!! ATGAAAAAAAGATAAAAGTT+CGG + Chr3:53022678-53022697 None:intergenic 15.0%
!! TAAATAAGAAGAAATTAGTA+AGG + Chr3:53024112-53024131 None:intergenic 15.0%
!! TTGACTAAAATTTACATTTA+AGG - Chr3:53026584-53026603 MsG0380014332.01.T01:intron 15.0%
!!! TTTATATCTATTACGTTTTT+TGG - Chr3:53024620-53024639 MsG0380014332.01.T01:intron 15.0%
!! AAAATCACTACATCAAAATT+TGG - Chr3:53024940-53024959 MsG0380014332.01.T01:CDS 20.0%
!! AAATCACTACATCAAAATTT+GGG - Chr3:53024941-53024960 MsG0380014332.01.T01:CDS 20.0%
!! AAATCTAAATAATTACCTTC+AGG + Chr3:53024035-53024054 None:intergenic 20.0%
!! AAATGGAATACAAACTAAAA+TGG - Chr3:53026447-53026466 MsG0380014332.01.T01:intron 20.0%
!! AAATTTAAACCCTATATTTC+AGG - Chr3:53021837-53021856 MsG0380014332.01.T01:CDS 20.0%
!! AGATAAAAAATAAGTCCAAA+CGG - Chr3:53022293-53022312 MsG0380014332.01.T01:intron 20.0%
!! AGTAACTGAACAAAATAAAA+CGG + Chr3:53024206-53024225 None:intergenic 20.0%
!! ATATTATTCATAAGTTGTCA+AGG - Chr3:53022171-53022190 MsG0380014332.01.T01:intron 20.0%
!! ATCCAAATAAAAAAGCTTAT+AGG - Chr3:53022602-53022621 MsG0380014332.01.T01:intron 20.0%
!! ATTCTGAATATAAAGAAGAT+AGG - Chr3:53024312-53024331 MsG0380014332.01.T01:intron 20.0%
!! GAAAATTTCAACACTAAAAT+TGG + Chr3:53022780-53022799 None:intergenic 20.0%
!! GTAAATTAGTAGTTATGTTA+TGG - Chr3:53022710-53022729 MsG0380014332.01.T01:CDS 20.0%
!! GTTATAAGAGAATAAATAAC+AGG + Chr3:53027162-53027181 None:intergenic 20.0%
!! TAAAACTCAACCAAAAAAAT+AGG + Chr3:53023308-53023327 None:intergenic 20.0%
!! TACAAAAATATAAATGCTTG+AGG + Chr3:53027053-53027072 None:intergenic 20.0%
!! TCAATTATAATTGAACTTGA+TGG - Chr3:53025266-53025285 MsG0380014332.01.T01:intron 20.0%
!! TCCAAATAAAAAAGCTTATA+GGG - Chr3:53022603-53022622 MsG0380014332.01.T01:intron 20.0%
!!! AATCTTTTACGTTAATTCAT+AGG + Chr3:53022246-53022265 None:intergenic 20.0%
!!! ATAACAACGTATTTTCTTTT+TGG + Chr3:53026096-53026115 None:intergenic 20.0%
!!! ATCTATGATTAATTTTTTCC+TGG - Chr3:53025737-53025756 MsG0380014332.01.T01:intron 20.0%
!!! ATTTTTTTGGTTGAGTTTTA+GGG - Chr3:53023308-53023327 MsG0380014332.01.T01:intron 20.0%
!!! GCAACAATTTTTAAATTTAC+AGG - Chr3:53022573-53022592 MsG0380014332.01.T01:intron 20.0%
!!! GGTTTTAAAATGTAAAGTTT+TGG + Chr3:53026519-53026538 None:intergenic 20.0%
!!! TACTTTTTATTTGATAGGAT+TGG - Chr3:53022458-53022477 MsG0380014332.01.T01:intron 20.0%
!!! TATTTTTTTGGTTGAGTTTT+AGG - Chr3:53023307-53023326 MsG0380014332.01.T01:intron 20.0%
!!! TATTTTTTTTGAACAGGTTT+TGG + Chr3:53021545-53021564 None:intergenic 20.0%
!!! TGCTTTACTTTTTATTTGAT+AGG - Chr3:53022453-53022472 MsG0380014332.01.T01:intron 20.0%
!!! TGTTAATAAAAAAAGGGTTT+TGG + Chr3:53021586-53021605 None:intergenic 20.0%
!!! TTAGGGTGTTAATAAAAAAA+GGG + Chr3:53021592-53021611 None:intergenic 20.0%
!!! TTTAGGGTGTTAATAAAAAA+AGG + Chr3:53021593-53021612 None:intergenic 20.0%
! AAAAATAAGTCAATCCAAAC+AGG + Chr3:53022111-53022130 None:intergenic 25.0%
! AAATCTGTAAAATTCAGACT+AGG + Chr3:53025490-53025509 None:intergenic 25.0%
! AATGCAAGTAAAATTGTCAA+TGG + Chr3:53024261-53024280 None:intergenic 25.0%
! ACAAAAATAAGTTAACTAGC+AGG + Chr3:53026716-53026735 None:intergenic 25.0%
! ACAACATGTTTAATTGAATG+TGG + Chr3:53026133-53026152 None:intergenic 25.0%
! AGCAATACTTGTCAAAAAAA+TGG - Chr3:53026430-53026449 MsG0380014332.01.T01:intron 25.0%
! CATAGAACTTTATGTAAGTA+CGG - Chr3:53024800-53024819 MsG0380014332.01.T01:intron 25.0%
! CTGTAATAAACAATGTGTAT+CGG + Chr3:53023533-53023552 None:intergenic 25.0%
! GATAGAATTCGACAAAAAAT+TGG + Chr3:53025066-53025085 None:intergenic 25.0%
! TAAGAAAAGTTCTCATAGAA+TGG + Chr3:53021882-53021901 None:intergenic 25.0%
! TCAATTGTAATTGAATGATG+TGG - Chr3:53026152-53026171 MsG0380014332.01.T01:intron 25.0%
! TCTTATCATCTATTGAAAGA+AGG + Chr3:53025223-53025242 None:intergenic 25.0%
! TGTTAAACATGTAATAACGA+CGG - Chr3:53024358-53024377 MsG0380014332.01.T01:CDS 25.0%
! TTAGCTCAAACAGAAATTAA+GGG + Chr3:53023445-53023464 None:intergenic 25.0%
! TTTGTTCTACATTCATGATA+AGG - Chr3:53023780-53023799 MsG0380014332.01.T01:intron 25.0%
!! AAAAAATAGGTTTTCCGTTT+TGG + Chr3:53023295-53023314 None:intergenic 25.0%
!! AAAAATAGGTTTTCCGTTTT+GGG + Chr3:53023294-53023313 None:intergenic 25.0%
!! AATATAAATGCTTGAGGTTT+TGG + Chr3:53027047-53027066 None:intergenic 25.0%
!! AGTCTGAATTTTACAGATTT+GGG - Chr3:53025490-53025509 MsG0380014332.01.T01:intron 25.0%
!! ATCAAAATTTGGGTTATATC+TGG - Chr3:53024951-53024970 MsG0380014332.01.T01:CDS 25.0%
!! ATTACTTCAATTGATTCCTT+TGG + Chr3:53021668-53021687 None:intergenic 25.0%
!! TAATCGATTCCTGAAATATA+GGG + Chr3:53021849-53021868 None:intergenic 25.0%
!! TAGTCTGAATTTTACAGATT+TGG - Chr3:53025489-53025508 MsG0380014332.01.T01:intron 25.0%
!! TATTTTGTTCAGTTACTATG+AGG - Chr3:53024209-53024228 MsG0380014332.01.T01:CDS 25.0%
!! TGAATTTTGTATTTCGTCAT+CGG - Chr3:53024168-53024187 MsG0380014332.01.T01:CDS 25.0%
!! TTAATCGATTCCTGAAATAT+AGG + Chr3:53021850-53021869 None:intergenic 25.0%
!!! AAACGGAAAACCTATTTTTT+TGG - Chr3:53023295-53023314 MsG0380014332.01.T01:intron 25.0%
!!! ATTCATTGTTGATTTGCTTT+TGG + Chr3:53022817-53022836 None:intergenic 25.0%
!!! CAAGTTGAATCAATGTTTTA+GGG + Chr3:53021609-53021628 None:intergenic 25.0%
!!! CTGCTAATTTTAAAATACAG+AGG + Chr3:53025657-53025676 None:intergenic 25.0%
!!! GTATTTTAAAATTAGCAGAG+TGG - Chr3:53025659-53025678 MsG0380014332.01.T01:intron 25.0%
!!! TAAAAAAAGGGTTTTGGATT+TGG + Chr3:53021580-53021599 None:intergenic 25.0%
!!! TAGCTTTGATTGTATTGTTT+TGG - Chr3:53023483-53023502 MsG0380014332.01.T01:intron 25.0%
!!! TCCCTATAAGCTTTTTTATT+TGG + Chr3:53022607-53022626 None:intergenic 25.0%
!!! TGCTTTGCTTTAAGTTTTAA+GGG - Chr3:53022085-53022104 MsG0380014332.01.T01:intron 25.0%
!!! TTCAACACTAAAATTGGTTT+TGG + Chr3:53022774-53022793 None:intergenic 25.0%
!!! TTCAGAATTTTTTATCTCAG+TGG + Chr3:53024300-53024319 None:intergenic 25.0%
!!! TTTTTCTTGATTCGAATAGT+TGG - Chr3:53023911-53023930 MsG0380014332.01.T01:intron 25.0%
AAACACATGAAAAGTAAACC+AGG + Chr3:53022434-53022453 None:intergenic 30.0%
AAATAAAAAGGCAAGAAGCA+TGG - Chr3:53026007-53026026 MsG0380014332.01.T01:intron 30.0%
AAATCACTCATGAATTCCAA+AGG + Chr3:53025835-53025854 None:intergenic 30.0%
AAATTAAGGTTGCCAATCTA+TGG + Chr3:53026763-53026782 None:intergenic 30.0%
AACACATGAAAAGTAAACCA+GGG + Chr3:53022433-53022452 None:intergenic 30.0%
AAGATAAATTGTTGATGCCA+AGG + Chr3:53021700-53021719 None:intergenic 30.0%
AATAGTGAGAATATCGTATC+AGG + Chr3:53023893-53023912 None:intergenic 30.0%
AATCACTCATGAATTCCAAA+GGG + Chr3:53025834-53025853 None:intergenic 30.0%
AATGAATGAGCACAATAAAC+AGG + Chr3:53025898-53025917 None:intergenic 30.0%
ACTGGTAATTGATGTATCAA+GGG + Chr3:53023961-53023980 None:intergenic 30.0%
AGATAAATTGTTGATGCCAA+GGG + Chr3:53021699-53021718 None:intergenic 30.0%
ATAAAGAACGCTATAATTGC+AGG - Chr3:53022632-53022651 MsG0380014332.01.T01:intron 30.0%
ATGGTCAAAGTTATTGCTAA+TGG - Chr3:53026466-53026485 MsG0380014332.01.T01:intron 30.0%
CAAGTAAAATTGTCAATGGT+TGG + Chr3:53024257-53024276 None:intergenic 30.0%
CTAATCTTAAACACTATAGC+AGG + Chr3:53024140-53024159 None:intergenic 30.0%
CTCAAGTAAGCTGATAAAAT+TGG + Chr3:53026663-53026682 None:intergenic 30.0%
GAATAGAACACTATGACATT+TGG - Chr3:53023552-53023571 MsG0380014332.01.T01:CDS 30.0%
GACATTTCTTCATACTTTCT+TGG - Chr3:53025548-53025567 MsG0380014332.01.T01:intron 30.0%
GTAATATGAACTACCCAATA+AGG + Chr3:53024089-53024108 None:intergenic 30.0%
GTCGTTATTACATGTTTAAC+AGG + Chr3:53024359-53024378 None:intergenic 30.0%
GTTAGCTCAAACAGAAATTA+AGG + Chr3:53023446-53023465 None:intergenic 30.0%
TAAAGAACGCTATAATTGCA+GGG - Chr3:53022633-53022652 MsG0380014332.01.T01:intron 30.0%
TAAAGATGTAAGCTTTCTGT+AGG - Chr3:53023813-53023832 MsG0380014332.01.T01:intron 30.0%
TAAAGTTCTATGTGTATGTG+AGG + Chr3:53024792-53024811 None:intergenic 30.0%
TCTAAATAATTACCTTCAGG+TGG + Chr3:53024032-53024051 None:intergenic 30.0%
TGAAATATGGAACTAAAGGA+TGG + Chr3:53024569-53024588 None:intergenic 30.0%
TGGTGAACCTAATATACTAA+GGG + Chr3:53024064-53024083 None:intergenic 30.0%
TTACTTGCATTGTTGCAAAA+AGG - Chr3:53025113-53025132 MsG0380014332.01.T01:intron 30.0%
TTGGTGAACCTAATATACTA+AGG + Chr3:53024065-53024084 None:intergenic 30.0%
TTTATGTATCAGCCGATATA+TGG - Chr3:53023706-53023725 MsG0380014332.01.T01:intron 30.0%
TTTCAAAACCAAAACCTGTT+CGG + Chr3:53023381-53023400 None:intergenic 30.0%
TTTGCTTATACTTCCAAATC+TGG - Chr3:53025930-53025949 MsG0380014332.01.T01:intron 30.0%
! AAACTAAGCTTTATCCAACT+AGG + Chr3:53023595-53023614 None:intergenic 30.0%
! ATATGAAAGTGCATGTAACT+CGG - Chr3:53027105-53027124 MsG0380014332.01.T01:five_prime_UTR 30.0%
! CAATGCTCTTCTAAAAAGAA+TGG + Chr3:53024520-53024539 None:intergenic 30.0%
! TGACCTTTTCATGCATATTT+TGG + Chr3:53026289-53026308 None:intergenic 30.0%
! TTTAAAATACAGAGGCTAGA+AGG + Chr3:53025649-53025668 None:intergenic 30.0%
!! ATATAAGAGGAAGGTGTTAA+AGG - Chr3:53023094-53023113 MsG0380014332.01.T01:CDS 30.0%
!! CATTCTTTTTAGAAGAGCAT+TGG - Chr3:53024518-53024537 MsG0380014332.01.T01:intron 30.0%
!! GCAAGTTGAATCAATGTTTT+AGG + Chr3:53021610-53021629 None:intergenic 30.0%
!! GTGCTTTGCTTTAAGTTTTA+AGG - Chr3:53022084-53022103 MsG0380014332.01.T01:intron 30.0%
!! TATAAGAGGAAGGTGTTAAA+GGG - Chr3:53023095-53023114 MsG0380014332.01.T01:CDS 30.0%
!! TTGTTGCTTTGATATGCAAA+AGG - Chr3:53025191-53025210 MsG0380014332.01.T01:intron 30.0%
!! TTTCATGTGTTCGTTTTTGT+GGG - Chr3:53022538-53022557 MsG0380014332.01.T01:intron 30.0%
!! TTTTCATGTGTTCGTTTTTG+TGG - Chr3:53022537-53022556 MsG0380014332.01.T01:intron 30.0%
!!! GATTAATTTTTTCCTGGATG+TGG - Chr3:53025743-53025762 MsG0380014332.01.T01:intron 30.0%
!!! TGAGTGATTTTTTTGCTTTG+TGG - Chr3:53025845-53025864 MsG0380014332.01.T01:intron 30.0%
!!! TTTTGAACAGGTTTTGGATT+TGG + Chr3:53021539-53021558 None:intergenic 30.0%
AAAATTACAACTCACCAGCA+AGG + Chr3:53026046-53026065 None:intergenic 35.0%
AAAGAACGCTATAATTGCAG+GGG - Chr3:53022634-53022653 MsG0380014332.01.T01:intron 35.0%
ACAAATAGATTCATGCGTGA+TGG + Chr3:53026193-53026212 None:intergenic 35.0%
ACAGAAATTAAGGGCTCATT+CGG + Chr3:53023436-53023455 None:intergenic 35.0%
ACAGACTGTCTGATAATCAT+TGG - Chr3:53025143-53025162 MsG0380014332.01.T01:intron 35.0%
ACAGGTAATTTGATATCCAC+AGG + Chr3:53024341-53024360 None:intergenic 35.0%
ACGAATGCGATATTCAAGAT+CGG + Chr3:53021747-53021766 None:intergenic 35.0%
ACTTGCATTGAGGAATTTAG+AGG - Chr3:53021924-53021943 MsG0380014332.01.T01:intron 35.0%
AGAATATCGTATCAGGATTC+AGG + Chr3:53023886-53023905 None:intergenic 35.0%
AGGCCAAAATATGCATGAAA+AGG - Chr3:53026283-53026302 MsG0380014332.01.T01:intron 35.0%
ATACATCAATTACCAGTCAC+TGG - Chr3:53023964-53023983 MsG0380014332.01.T01:CDS 35.0%
ATGAACTACCCAATAAGGTT+TGG + Chr3:53024084-53024103 None:intergenic 35.0%
ATTACTGTAGCAAAGACTGA+AGG - Chr3:53024974-53024993 MsG0380014332.01.T01:CDS 35.0%
CAACATTATGGTGCAATCAA+AGG - Chr3:53025591-53025610 MsG0380014332.01.T01:intron 35.0%
CAGACTGTCTGATAATCATT+GGG - Chr3:53025144-53025163 MsG0380014332.01.T01:intron 35.0%
CCAAATAATTCAAACACTGG+TGG + Chr3:53027002-53027021 None:intergenic 35.0%
CCACCAGTGTTTGAATTATT+TGG - Chr3:53026999-53027018 MsG0380014332.01.T01:CDS 35.0%
CGTGTGAAATATGGAACTAA+AGG + Chr3:53024573-53024592 None:intergenic 35.0%
CTACATTCATGATAAGGATG+TGG - Chr3:53023786-53023805 MsG0380014332.01.T01:intron 35.0%
CTCATCAGCATTGTCATAAA+AGG + Chr3:53024879-53024898 None:intergenic 35.0%
CTGGTAATTGATGTATCAAG+GGG + Chr3:53023960-53023979 None:intergenic 35.0%
GACTGGTAATTGATGTATCA+AGG + Chr3:53023962-53023981 None:intergenic 35.0%
GAGTTAACTCGTAAATGTCT+CGG + Chr3:53026741-53026760 None:intergenic 35.0%
GATTGCACAATCAGTAAAAG+TGG + Chr3:53025316-53025335 None:intergenic 35.0%
GCAACAATGCAAGTAATGAT+GGG + Chr3:53025109-53025128 None:intergenic 35.0%
GGCTCAAGTAGATGAAAATA+TGG + Chr3:53025958-53025977 None:intergenic 35.0%
GGCTCATACATAAAGACAAA+TGG + Chr3:53023512-53023531 None:intergenic 35.0%
GGTGAACCTAATATACTAAG+GGG + Chr3:53024063-53024082 None:intergenic 35.0%
TACGAGTTAACTCCATAGAT+TGG - Chr3:53026748-53026767 MsG0380014332.01.T01:intron 35.0%
TAGGTTCACCAAACCTTATT+GGG - Chr3:53024073-53024092 MsG0380014332.01.T01:intron 35.0%
TAGTTATGTTATGGTCCACT+CGG - Chr3:53022719-53022738 MsG0380014332.01.T01:CDS 35.0%
TATCAATGTCTGACAAAACC+CGG - Chr3:53022849-53022868 MsG0380014332.01.T01:intron 35.0%
TCAACTGACATGGAATTCAT+TGG + Chr3:53026813-53026832 None:intergenic 35.0%
TCGCCAAATAATTCAAACAC+TGG + Chr3:53027005-53027024 None:intergenic 35.0%
TCTTAAACACTATAGCAGGT+AGG + Chr3:53024136-53024155 None:intergenic 35.0%
TGAAAATATGGCTCCAGATT+TGG + Chr3:53025946-53025965 None:intergenic 35.0%
TGAATTAGAAACTCCCATCA+TGG + Chr3:53026868-53026887 None:intergenic 35.0%
TGATAATCATTGGGAGCTTA+GGG - Chr3:53025153-53025172 MsG0380014332.01.T01:intron 35.0%
TGCAACAATGCAAGTAATGA+TGG + Chr3:53025110-53025129 None:intergenic 35.0%
TGCAATTCAGAGAACATTAC+CGG - Chr3:53022914-53022933 MsG0380014332.01.T01:intron 35.0%
TGCATTGTTGCAAAAAGGAT+TGG - Chr3:53025118-53025137 MsG0380014332.01.T01:intron 35.0%
TTACTGTAGCAAAGACTGAA+GGG - Chr3:53024975-53024994 MsG0380014332.01.T01:CDS 35.0%
TTAGAGGCGAAACCATATAT+CGG + Chr3:53023721-53023740 None:intergenic 35.0%
TTAGGTTCACCAAACCTTAT+TGG - Chr3:53024072-53024091 MsG0380014332.01.T01:intron 35.0%
TTCAAAACCAAAACCTGTTC+GGG + Chr3:53023380-53023399 None:intergenic 35.0%
TTGATTGCACCATAATGTTG+AGG + Chr3:53025591-53025610 None:intergenic 35.0%
TTGTGCTCATTCATTTGCAT+AGG - Chr3:53025903-53025922 MsG0380014332.01.T01:intron 35.0%
! AAACTCAATTTTACCCGAAC+AGG - Chr3:53023364-53023383 MsG0380014332.01.T01:intron 35.0%
! AATTTTACCCGAACAGGTTT+TGG - Chr3:53023370-53023389 MsG0380014332.01.T01:intron 35.0%
! CTTTTATGACAATGCTGATG+AGG - Chr3:53024877-53024896 MsG0380014332.01.T01:intron 35.0%
! CTTTTTCCCCTTATCATATC+AGG - Chr3:53024695-53024714 MsG0380014332.01.T01:CDS 35.0%
! GTATGTGAGGATTTTGCAAA+AGG + Chr3:53024779-53024798 None:intergenic 35.0%
! TGCAATTCTCTACACTGATT+TGG + Chr3:53026610-53026629 None:intergenic 35.0%
!! ATAAGAGGAAGGTGTTAAAG+GGG - Chr3:53023096-53023115 MsG0380014332.01.T01:CDS 35.0%
!! CTTTTACTGATTGTGCAATC+TGG - Chr3:53025316-53025335 MsG0380014332.01.T01:intron 35.0%
!! GAGCTGATTTTGAATAAGTC+TGG - Chr3:53024492-53024511 MsG0380014332.01.T01:intron 35.0%
!! GGTTGATGACTTCAGTAATT+AGG + Chr3:53026249-53026268 None:intergenic 35.0%
!! TTGCTTTTCAAGCTGCATTT+CGG + Chr3:53025980-53025999 None:intergenic 35.0%
!!! TTAAGTTTTAAGGGCCTGTT+TGG - Chr3:53022094-53022113 MsG0380014332.01.T01:intron 35.0%
!!! TTGTTGATTTGCTTTTGGTG+TGG + Chr3:53022812-53022831 None:intergenic 35.0%
AAAGCCATGATTGCAATGTC+AGG - Chr3:53026365-53026384 MsG0380014332.01.T01:intron 40.0%
AAAGCTCTGCCTCAACATTA+TGG - Chr3:53025579-53025598 MsG0380014332.01.T01:intron 40.0%
AACTAGGTGTGATCACTACA+TGG + Chr3:53023579-53023598 None:intergenic 40.0%
AAGAACGCTATAATTGCAGG+GGG - Chr3:53022635-53022654 MsG0380014332.01.T01:intron 40.0%
AAGATAGTAACACCACATCC+AGG + Chr3:53025758-53025777 None:intergenic 40.0%
AATGTTCTCTGAATTGCAGC+AGG + Chr3:53022912-53022931 None:intergenic 40.0%
AATTTGCAACAGGTGGTACT+GGG - Chr3:53026778-53026797 MsG0380014332.01.T01:intron 40.0%
ACAATATGACGACATAGTGG+TGG - Chr3:53022939-53022958 MsG0380014332.01.T01:intron 40.0%
ACCTGCTCATTTCTCTTCTT+CGG + Chr3:53025293-53025312 None:intergenic 40.0%
ACGATGCTCATATAAGAGGA+AGG - Chr3:53023085-53023104 MsG0380014332.01.T01:intron 40.0%
ACGATGTTCAGAGAATAGGA+AGG - Chr3:53023205-53023224 MsG0380014332.01.T01:CDS 40.0%
ACTAGGTGTGATCACTACAT+GGG + Chr3:53023578-53023597 None:intergenic 40.0%
AGAAATGTCTTTGTCACACG+TGG + Chr3:53025537-53025556 None:intergenic 40.0%
AGAAATTAAGGGCTCATTCG+GGG + Chr3:53023434-53023453 None:intergenic 40.0%
AGTTATGTTATGGTCCACTC+GGG - Chr3:53022720-53022739 MsG0380014332.01.T01:CDS 40.0%
ATCAAAGGAATAGCAGCTCT+TGG - Chr3:53025606-53025625 MsG0380014332.01.T01:intron 40.0%
ATCAATGTCTGACAAAACCC+GGG - Chr3:53022850-53022869 MsG0380014332.01.T01:intron 40.0%
ATCAATTACCAGTCACTGGT+TGG - Chr3:53023968-53023987 MsG0380014332.01.T01:CDS 40.0%
ATGTAGTGATCACACCTAGT+TGG - Chr3:53023578-53023597 MsG0380014332.01.T01:CDS 40.0%
ATGTCAAGCAGTATTTGGAG+CGG - Chr3:53023029-53023048 MsG0380014332.01.T01:intron 40.0%
ATGTCAGTTGACAACATGCA+AGG - Chr3:53026822-53026841 MsG0380014332.01.T01:CDS 40.0%
ATGTTAAATGCTCGCTGTTG+AGG - Chr3:53025342-53025361 MsG0380014332.01.T01:intron 40.0%
ATTAACAGCGACCGCTATTT+AGG + Chr3:53022320-53022339 None:intergenic 40.0%
ATTAGAAACTCCCATCATGG+TGG + Chr3:53026865-53026884 None:intergenic 40.0%
CAATATGACGACATAGTGGT+GGG - Chr3:53022940-53022959 MsG0380014332.01.T01:intron 40.0%
CAGAAATTAAGGGCTCATTC+GGG + Chr3:53023435-53023454 None:intergenic 40.0%
CATACCTGACATTGCAATCA+TGG + Chr3:53026372-53026391 None:intergenic 40.0%
CGAATGCGATATTCAAGATC+GGG + Chr3:53021746-53021765 None:intergenic 40.0%
CTATGCATCTGTTGTAACGT+AGG - Chr3:53025782-53025801 MsG0380014332.01.T01:intron 40.0%
CTGATAATCATTGGGAGCTT+AGG - Chr3:53025152-53025171 MsG0380014332.01.T01:intron 40.0%
CTGCTATGTCAAGCAGTATT+TGG - Chr3:53023024-53023043 MsG0380014332.01.T01:intron 40.0%
GAAGATGAGTGTGATTCCAA+AGG - Chr3:53021649-53021668 MsG0380014332.01.T01:exon 40.0%
GAAGTAATTGCACAAACCCT+TGG - Chr3:53021680-53021699 MsG0380014332.01.T01:CDS 40.0%
GCAACAAAGCGTGTGAAATA+TGG + Chr3:53024582-53024601 None:intergenic 40.0%
GCTTTGATATGCAAAAGGTG+TGG - Chr3:53025196-53025215 MsG0380014332.01.T01:intron 40.0%
GGAGTTTCTAATTCAAGCGT+CGG - Chr3:53026873-53026892 MsG0380014332.01.T01:intron 40.0%
GTACCACCTGTTGCAAATTA+AGG + Chr3:53026777-53026796 None:intergenic 40.0%
GTTCATTTCATTGTTGTGCC+CGG + Chr3:53022871-53022890 None:intergenic 40.0%
TAAAGAAGATAGGCTTCCTG+TGG - Chr3:53024322-53024341 MsG0380014332.01.T01:intron 40.0%
TAGAAACCAACAGCCCAAAA+CGG - Chr3:53023278-53023297 MsG0380014332.01.T01:intron 40.0%
TCATGCATGTGGAACTATTG+TGG - Chr3:53023162-53023181 MsG0380014332.01.T01:CDS 40.0%
TCGCATTCGTGAAATTATGC+AGG - Chr3:53021757-53021776 MsG0380014332.01.T01:CDS 40.0%
TGAATGTGGCAACACATGAT+TGG + Chr3:53026119-53026138 None:intergenic 40.0%
TGAGTGCCCCTTAGTATATT+AGG - Chr3:53024054-53024073 MsG0380014332.01.T01:intron 40.0%
TGTCAGTTGACAACATGCAA+GGG - Chr3:53026823-53026842 MsG0380014332.01.T01:CDS 40.0%
TTAACAGCGACCGCTATTTA+GGG + Chr3:53022319-53022338 None:intergenic 40.0%
TTAGAAACTCCCATCATGGT+GGG + Chr3:53026864-53026883 None:intergenic 40.0%
TTCATTTCATTGTTGTGCCC+GGG + Chr3:53022870-53022889 None:intergenic 40.0%
TTCCAAAGGGAAAAGAGTTG+AGG + Chr3:53025821-53025840 None:intergenic 40.0%
TTGATACTGCACTTGCATTG+AGG - Chr3:53021914-53021933 MsG0380014332.01.T01:CDS 40.0%
TTGCATGTTGTCAACTGACA+TGG + Chr3:53026823-53026842 None:intergenic 40.0%
TTTCCCCTTATCATATCAGG+TGG - Chr3:53024698-53024717 MsG0380014332.01.T01:CDS 40.0%
! ACAAGGCATCAACATGTTAC+TGG - Chr3:53022998-53023017 MsG0380014332.01.T01:intron 40.0%
! ACAATGCAAGTAATGATGGG+CGG + Chr3:53025106-53025125 None:intergenic 40.0%
! ACGGCTTGGGATTGTAAAAT+TGG - Chr3:53025693-53025712 MsG0380014332.01.T01:intron 40.0%
! ATTCATGCGTGATGGAAACT+AGG + Chr3:53026185-53026204 None:intergenic 40.0%
! CAAGAAGCATGGCAAGTATA+CGG - Chr3:53026018-53026037 MsG0380014332.01.T01:intron 40.0%
! CAAGGCATCAACATGTTACT+GGG - Chr3:53022999-53023018 MsG0380014332.01.T01:intron 40.0%
! TAATTTGCAACAGGTGGTAC+TGG - Chr3:53026777-53026796 MsG0380014332.01.T01:intron 40.0%
!! CAACCTTAATTTGCAACAGG+TGG - Chr3:53026771-53026790 MsG0380014332.01.T01:intron 40.0%
!! CAGAGTGGCTTGTTAGATAA+CGG - Chr3:53025674-53025693 MsG0380014332.01.T01:intron 40.0%
!! TAGAAGAGCATTGGTTACCT+TGG - Chr3:53024527-53024546 MsG0380014332.01.T01:intron 40.0%
!! TGCTTTTCAAGCTGCATTTC+GGG + Chr3:53025979-53025998 None:intergenic 40.0%
!! TGGCAACCTTAATTTGCAAC+AGG - Chr3:53026768-53026787 MsG0380014332.01.T01:intron 40.0%
!!! AGAGGAAGTGTTGTTTTCGT+TGG + Chr3:53026928-53026947 None:intergenic 40.0%
!!! GATAGGATTGGTTTTCAAGC+TGG - Chr3:53022470-53022489 MsG0380014332.01.T01:intron 40.0%
!!! TTGATTTGCTTTTGGTGTGG+AGG + Chr3:53022809-53022828 None:intergenic 40.0%
AACATGCAAGGGTCAACAAG+TGG - Chr3:53026834-53026853 MsG0380014332.01.T01:CDS 45.0%
AAGATCGGGTGAAAGAGCAA+GGG + Chr3:53021732-53021751 None:intergenic 45.0%
ACAATGCTGATGAGGTTGCA+AGG - Chr3:53024885-53024904 MsG0380014332.01.T01:intron 45.0%
AGAACGCTATAATTGCAGGG+GGG - Chr3:53022636-53022655 MsG0380014332.01.T01:intron 45.0%
AGATTGTGGTTGCAATGCAG+AGG - Chr3:53022406-53022425 MsG0380014332.01.T01:CDS 45.0%
AGCAAAGCACATACCCTTCT+CGG + Chr3:53022074-53022093 None:intergenic 45.0%
ATTTGCAACAGGTGGTACTG+GGG - Chr3:53026779-53026798 MsG0380014332.01.T01:intron 45.0%
CCTCGGTTCAAAAAAGCTTC+TGG - Chr3:53023748-53023767 MsG0380014332.01.T01:intron 45.0%
CCTTATCATATCAGGTGGCA+CGG - Chr3:53024703-53024722 MsG0380014332.01.T01:CDS 45.0%
CGTGCCACCTGATATGATAA+GGG + Chr3:53024705-53024724 None:intergenic 45.0%
CTATGTCGTCATATTGTCGC+CGG + Chr3:53022936-53022955 None:intergenic 45.0%
CTGCATTGCAACCACAATCT+CGG + Chr3:53022406-53022425 None:intergenic 45.0%
CTTGAAGTAGCACGACTTTG+AGG + Chr3:53026335-53026354 None:intergenic 45.0%
GCGACAATATGACGACATAG+TGG - Chr3:53022936-53022955 MsG0380014332.01.T01:intron 45.0%
GTCGGCATGTCATCATCAAT+GGG - Chr3:53026891-53026910 MsG0380014332.01.T01:intron 45.0%
GTGCCACCTGATATGATAAG+GGG + Chr3:53024704-53024723 None:intergenic 45.0%
GTGGACGATGCTCATATAAG+AGG - Chr3:53023081-53023100 MsG0380014332.01.T01:intron 45.0%
GTGGACGATGTTCAGAGAAT+AGG - Chr3:53023201-53023220 MsG0380014332.01.T01:CDS 45.0%
GTTATGTTATGGTCCACTCG+GGG - Chr3:53022721-53022740 MsG0380014332.01.T01:CDS 45.0%
TCAACCTTTCAGTGTGCAGT+AGG - Chr3:53026263-53026282 MsG0380014332.01.T01:intron 45.0%
TCAGACACCTAATCCGAGAA+GGG - Chr3:53022058-53022077 MsG0380014332.01.T01:intron 45.0%
TCCGAAGAAGAGAAATGAGC+AGG - Chr3:53025289-53025308 MsG0380014332.01.T01:intron 45.0%
TGAAAGAGCAAGGGCAACAT+CGG + Chr3:53021723-53021742 None:intergenic 45.0%
TGCATGTGGAACTATTGTGG+AGG - Chr3:53023165-53023184 MsG0380014332.01.T01:CDS 45.0%
TGCATTGCAACCACAATCTC+GGG + Chr3:53022405-53022424 None:intergenic 45.0%
TGGAAGGATGACATAGATGC+AGG - Chr3:53026966-53026985 MsG0380014332.01.T01:CDS 45.0%
TGTAATAACGACGGAGCTTC+AGG - Chr3:53024367-53024386 MsG0380014332.01.T01:CDS 45.0%
TGTGGAACTATTGTGGAGGT+TGG - Chr3:53023169-53023188 MsG0380014332.01.T01:CDS 45.0%
TTATTTCGTGCCCGAGATTG+TGG - Chr3:53022392-53022411 MsG0380014332.01.T01:CDS 45.0%
TTCAATAGCCAACCAGTGAC+TGG + Chr3:53023979-53023998 None:intergenic 45.0%
! AAGTGGATTTCCCACCATGA+TGG - Chr3:53026851-53026870 MsG0380014332.01.T01:CDS 45.0%
! ACTGTATTCTGGTGGTGAAG+GGG - Chr3:53023059-53023078 MsG0380014332.01.T01:intron 45.0%
! AGCCTCAACTCTTTTCCCTT+TGG - Chr3:53025816-53025835 MsG0380014332.01.T01:intron 45.0%
! AGTCACTGGTTGGCTATTGA+AGG - Chr3:53023978-53023997 MsG0380014332.01.T01:CDS 45.0%
! AGTGGATTTCCCACCATGAT+GGG - Chr3:53026852-53026871 MsG0380014332.01.T01:CDS 45.0%
! CACTGTATTCTGGTGGTGAA+GGG - Chr3:53023058-53023077 MsG0380014332.01.T01:intron 45.0%
! GAGGTTGCAAGGTTGATCAT+TGG - Chr3:53024896-53024915 MsG0380014332.01.T01:intron 45.0%
! GTTGAGGCAGAGCTTTTGTA+GGG + Chr3:53025575-53025594 None:intergenic 45.0%
! TGTTGAGGCAGAGCTTTTGT+AGG + Chr3:53025576-53025595 None:intergenic 45.0%
!! ACCTTCAGGTGGAGCATTTT+CGG + Chr3:53024021-53024040 None:intergenic 45.0%
!! ATGTGTTCGTTTTTGTGGGC+AGG - Chr3:53022542-53022561 MsG0380014332.01.T01:intron 45.0%
!! CAAAGTCGTGCTACTTCAAG+TGG - Chr3:53026335-53026354 MsG0380014332.01.T01:intron 45.0%
!! GAAGGTGTTCACGAAGATGA+AGG - Chr3:53023223-53023242 MsG0380014332.01.T01:intron 45.0%
!! GATGTATCAAGGGGTGCTTT+CGG + Chr3:53023951-53023970 None:intergenic 45.0%
!! GGCTTGTTAGATAACGGCTT+GGG - Chr3:53025680-53025699 MsG0380014332.01.T01:intron 45.0%
!! TAATGATGGGCGGCATCAAT+TGG + Chr3:53025096-53025115 None:intergenic 45.0%
!! TGGCTTGTTAGATAACGGCT+TGG - Chr3:53025679-53025698 MsG0380014332.01.T01:intron 45.0%
!! TGTGTTCGTTTTTGTGGGCA+GGG - Chr3:53022543-53022562 MsG0380014332.01.T01:intron 45.0%
!! TTCCTCTTCCATTCTAGCTC+AGG - Chr3:53026941-53026960 MsG0380014332.01.T01:intron 45.0%
!!! CCAGAAGCTTTTTTGAACCG+AGG + Chr3:53023751-53023770 None:intergenic 45.0%
!!! GAAGCTTTTTTGAACCGAGG+AGG + Chr3:53023748-53023767 None:intergenic 45.0%
!!! TCGGGGTGGTAGTTAGTTTT+TGG + Chr3:53023417-53023436 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTATAG+GGG - Chr3:53023622-53023641 MsG0380014332.01.T01:CDS 5.0%
AAACAGAAAACCACCCCGAG+TGG + Chr3:53022737-53022756 None:intergenic 50.0%
AATTAAGGGCTCATTCGGGG+TGG + Chr3:53023431-53023450 None:intergenic 50.0%
AATTGCTGCCGATGTAGCTG+CGG - Chr3:53022337-53022356 MsG0380014332.01.T01:intron 50.0%
AGCCTGAGCTAGAATGGAAG+AGG + Chr3:53026946-53026965 None:intergenic 50.0%
ATGAAGGAGCAGCACGCAAA+AGG - Chr3:53023239-53023258 MsG0380014332.01.T01:intron 50.0%
CAAGATCGGGTGAAAGAGCA+AGG + Chr3:53021733-53021752 None:intergenic 50.0%
CCGTGCCACCTGATATGATA+AGG + Chr3:53024706-53024725 None:intergenic 50.0%
CGTCGGCATGTCATCATCAA+TGG - Chr3:53026890-53026909 MsG0380014332.01.T01:intron 50.0%
CTTCCAAGCCTGAGCTAGAA+TGG + Chr3:53026952-53026971 None:intergenic 50.0%
GCACATACCCTTCTCGGATT+AGG + Chr3:53022068-53022087 None:intergenic 50.0%
GGAACTATTGTGGAGGTTGG+TGG - Chr3:53023172-53023191 MsG0380014332.01.T01:CDS 50.0%
GTCAGACACCTAATCCGAGA+AGG - Chr3:53022057-53022076 MsG0380014332.01.T01:intron 50.0%
GTCCAAACGGCCCTAAATAG+CGG - Chr3:53022306-53022325 MsG0380014332.01.T01:intron 50.0%
GTGTGTGTGTGTGTGTCTGT+GGG - Chr3:53025378-53025397 MsG0380014332.01.T01:intron 50.0%
TGTGTGTGTGTGTGTGTCTG+TGG - Chr3:53025377-53025396 MsG0380014332.01.T01:intron 50.0%
TTGCCTTAATGCGCCTTGTG+CGG - Chr3:53024751-53024770 MsG0380014332.01.T01:CDS 50.0%
TTGGCCTACTGCACACTGAA+AGG + Chr3:53026270-53026289 None:intergenic 50.0%
TTTGCAAAAGGCTCCGCACA+AGG + Chr3:53024767-53024786 None:intergenic 50.0%
! AAGGTGTTAAAGGGGTGTGG+AGG - Chr3:53023104-53023123 MsG0380014332.01.T01:CDS 50.0%
! CACACGCTTTGTTGCTGATG+AGG - Chr3:53024587-53024606 MsG0380014332.01.T01:intron 50.0%
! GCACTGTATTCTGGTGGTGA+AGG - Chr3:53023057-53023076 MsG0380014332.01.T01:intron 50.0%
! GTTACCTTGGCAACTGACTC+AGG - Chr3:53024540-53024559 MsG0380014332.01.T01:intron 50.0%
! TGTTAAAGGGGTGTGGAGGT+TGG - Chr3:53023108-53023127 MsG0380014332.01.T01:CDS 50.0%
!! AGGAAGGTGTTAAAGGGGTG+TGG - Chr3:53023101-53023120 MsG0380014332.01.T01:CDS 50.0%
!! CATTCTAGCTCAGGCTTGGA+AGG - Chr3:53026950-53026969 MsG0380014332.01.T01:intron 50.0%
!! CCTTCAGGTGGAGCATTTTC+GGG + Chr3:53024020-53024039 None:intergenic 50.0%
!! CGTGCTACTTCAAGTGGCAA+TGG - Chr3:53026341-53026360 MsG0380014332.01.T01:intron 50.0%
!! CTTCCATTCTAGCTCAGGCT+TGG - Chr3:53026946-53026965 MsG0380014332.01.T01:intron 50.0%
!! GGAGCATTTTCGGGAATTGC+AGG + Chr3:53024011-53024030 None:intergenic 50.0%
!! GGTTTTCCGTTTTGGGCTGT+TGG + Chr3:53023287-53023306 None:intergenic 50.0%
!! TTGTGGAGGTTGGTGGTGAA+AGG - Chr3:53023179-53023198 MsG0380014332.01.T01:CDS 50.0%
ATGTTATGGTCCACTCGGGG+TGG - Chr3:53022724-53022743 MsG0380014332.01.T01:CDS 55.0%
CCCGAAAATGCTCCACCTGA+AGG - Chr3:53024017-53024036 MsG0380014332.01.T01:intron 55.0%
GAACCGAGGAGGATCGTTAG+AGG + Chr3:53023737-53023756 None:intergenic 55.0%
GAGTCCTGAGTCAGTTGCCA+AGG + Chr3:53024547-53024566 None:intergenic 55.0%
GCAAGTATACGGAGCCTTGC+TGG - Chr3:53026029-53026048 MsG0380014332.01.T01:intron 55.0%
TCGCCTCTAACGATCCTCCT+CGG - Chr3:53023731-53023750 MsG0380014332.01.T01:intron 55.0%
! AACAGGTGGTACTGGGGTTG+TGG - Chr3:53026785-53026804 MsG0380014332.01.T01:CDS 55.0%
! AGCAGTATTTGGAGCGGCAG+CGG - Chr3:53023035-53023054 MsG0380014332.01.T01:intron 55.0%
! GACCGCTATTTAGGGCCGTT+TGG + Chr3:53022311-53022330 None:intergenic 55.0%
! GTATTCTGGTGGTGAAGGGG+TGG - Chr3:53023062-53023081 MsG0380014332.01.T01:intron 55.0%
! TAAAGGGGTGTGGAGGTTGG+TGG - Chr3:53023111-53023130 MsG0380014332.01.T01:CDS 55.0%
! TGGTGAAGGGGTGTGCAAGA+CGG - Chr3:53023131-53023150 MsG0380014332.01.T01:CDS 55.0%
!! CGACATAGTGGTGGGTCGTA+TGG - Chr3:53022948-53022967 MsG0380014332.01.T01:intron 55.0%
!! CTGCGGTCGGGTTGTAGTTT+TGG - Chr3:53022354-53022373 MsG0380014332.01.T01:CDS 55.0%
!! GTGTGGAGGTTGGTGGTGAA+GGG - Chr3:53023118-53023137 MsG0380014332.01.T01:CDS 55.0%
!! TGGAGGTTGGTGGTGAAAGG+TGG - Chr3:53023182-53023201 MsG0380014332.01.T01:CDS 55.0%
!! TGTGGAGGTTGGTGGTGAAG+GGG - Chr3:53023119-53023138 MsG0380014332.01.T01:CDS 55.0%
AGCGATGTGGCGGTGCATGA+TGG - Chr3:53022972-53022991 MsG0380014332.01.T01:intron 60.0%
CAACCCGACCGCAGCTACAT+CGG + Chr3:53022348-53022367 None:intergenic 60.0%
CGATGTGGCGGTGCATGATG+GGG - Chr3:53022974-53022993 MsG0380014332.01.T01:intron 60.0%
CGGAGGCAGTGTCATGCATG+TGG - Chr3:53023151-53023170 MsG0380014332.01.T01:CDS 60.0%
GCAGCGGCACTGTATTCTGG+TGG - Chr3:53023051-53023070 MsG0380014332.01.T01:intron 60.0%
GCGATGTGGCGGTGCATGAT+GGG - Chr3:53022973-53022992 MsG0380014332.01.T01:intron 60.0%
GCTCCGCACAAGGCGCATTA+AGG + Chr3:53024757-53024776 None:intergenic 60.0%
GGTTGCAATGCAGAGGACCC+TGG - Chr3:53022413-53022432 MsG0380014332.01.T01:CDS 60.0%
GTCGTATGGCAGCGATGTGG+CGG - Chr3:53022962-53022981 MsG0380014332.01.T01:intron 60.0%
TGGGTCGTATGGCAGCGATG+TGG - Chr3:53022959-53022978 MsG0380014332.01.T01:intron 60.0%
! GCGGTGCATGATGGGGTACA+AGG - Chr3:53022981-53023000 MsG0380014332.01.T01:intron 60.0%
! TGAAGGGGTGTGCAAGACGG+AGG - Chr3:53023134-53023153 MsG0380014332.01.T01:CDS 60.0%
!! GGTGTGGAGGTTGGTGGTGA+AGG - Chr3:53023117-53023136 MsG0380014332.01.T01:CDS 60.0%
CTGCCGATGTAGCTGCGGTC+GGG - Chr3:53022342-53022361 MsG0380014332.01.T01:intron 65.0%
GCGGCAGCGGCACTGTATTC+TGG - Chr3:53023048-53023067 MsG0380014332.01.T01:intron 65.0%
GCTGCCGATGTAGCTGCGGT+CGG - Chr3:53022341-53022360 MsG0380014332.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 53021527 53027203 53021527 ID=MsG0380014332.01;Name=MsG0380014332.01
Chr3 mRNA 53021527 53027203 53021527 ID=MsG0380014332.01.T01;Parent=MsG0380014332.01;Name=MsG0380014332.01.T01;_AED=0.50;_eAED=0.50;_QI=126|1|1|1|1|1|12|130|510
Chr3 exon 53021527 53021940 53021527 ID=MsG0380014332.01.T01:exon:9873;Parent=MsG0380014332.01.T01
Chr3 exon 53022344 53022455 53022344 ID=MsG0380014332.01.T01:exon:9872;Parent=MsG0380014332.01.T01
Chr3 exon 53022680 53022805 53022680 ID=MsG0380014332.01.T01:exon:9871;Parent=MsG0380014332.01.T01
Chr3 exon 53023092 53023224 53023092 ID=MsG0380014332.01.T01:exon:9870;Parent=MsG0380014332.01.T01
Chr3 exon 53023518 53023642 53023518 ID=MsG0380014332.01.T01:exon:9869;Parent=MsG0380014332.01.T01
Chr3 exon 53023918 53024013 53023918 ID=MsG0380014332.01.T01:exon:9868;Parent=MsG0380014332.01.T01
Chr3 exon 53024122 53024259 53024122 ID=MsG0380014332.01.T01:exon:9867;Parent=MsG0380014332.01.T01
Chr3 exon 53024342 53024436 53024342 ID=MsG0380014332.01.T01:exon:9866;Parent=MsG0380014332.01.T01
Chr3 exon 53024692 53024800 53024692 ID=MsG0380014332.01.T01:exon:9865;Parent=MsG0380014332.01.T01
Chr3 exon 53024911 53025012 53024911 ID=MsG0380014332.01.T01:exon:9864;Parent=MsG0380014332.01.T01
Chr3 exon 53026785 53026871 53026785 ID=MsG0380014332.01.T01:exon:9863;Parent=MsG0380014332.01.T01
Chr3 exon 53026952 53027203 53026952 ID=MsG0380014332.01.T01:exon:9862;Parent=MsG0380014332.01.T01
Chr3 five_prime_UTR 53027078 53027203 53027078 ID=MsG0380014332.01.T01:five_prime_utr;Parent=MsG0380014332.01.T01
Chr3 CDS 53026952 53027077 53026952 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53026785 53026871 53026785 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53024911 53025012 53024911 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53024692 53024800 53024692 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53024342 53024436 53024342 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53024122 53024259 53024122 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53023918 53024013 53023918 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53023518 53023642 53023518 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53023092 53023224 53023092 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53022680 53022805 53022680 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53022344 53022455 53022344 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 CDS 53021657 53021940 53021657 ID=MsG0380014332.01.T01:cds;Parent=MsG0380014332.01.T01
Chr3 three_prime_UTR 53021527 53021656 53021527 ID=MsG0380014332.01.T01:three_prime_utr;Parent=MsG0380014332.01.T01
Gene Sequence

>MsG0380014332.01.T01

ATGAGTGTGATTCCAAAGGAATCAATTGAAGTAATTGCACAAACCCTTGGCATCAACAATTTATCTTCCGATGTTGCCCTTGCTCTTTCACCCGATCTTGAATATCGCATTCGTGAAATTATGCAGGAATCGATTAAATGTATGCGCCATTCTATGAGAACTTTTCTTACTACTGATGATTTTGATACTGCACTTGCATTGAGGAATTTAGAGCCGATATATGGTTTCGCCTCTAACGATCCTCCTCGGTTCAAAAAAGCTTCTGGACACAATGATTTGTTCTACATTCATGATAAGGATGTGGATATTAAAGATTTGGTTGAAGCAGATTTACCGAAAGCACCCCTTGATACATCAATTACCAGTCACTGGTTGGCTATTGAAGGTGTGCAACCTGCAATTCCCGAAAATGCTCCACCTGAAGCTTCCACTGAGATAAAAAATTCTGAATATAAAGAAGATAGGCTTCCTGTGGATATCAAATTACCTGTTAAACATGTAATAACGACGGAGCTTCAGCTTTACTACGAGAAAATAATTGAGCTGATTTTGAATAAGTCTGGCTCCATTCTTTTTAGAAGAGCATTGGTTACCTTGGCAACTGACTCAGGACTCCATCCTTTAGTTCCATATTTCACACGCTTTGTTGCTGATGAGGTGGCACGGAATTTAAATAATTTAAACATCTTATTTGCCTTAATGCGCCTTGTGCGGAGCCTTTTGCAAAATCCTCACATACACATAGAACTTTATTTACACCAATTGATGCCGCCCATCATTACTTGCATTGTTGCAAAAAGGATTGGAAACAGACTGTCTGATAATCATTGGGAGCTTAGGGATTTCAGTGCTAATCTTGTTGCTTTGATATGCAAAAGATTTGGGCATATGTATCACAATCTTCAGCCACGTGTGACAAAGACATTTCTTCATACTTTCTTGGACCCTACAAAAGCTCTGCCTCAACATTATGGTGCAATCAAAGGAATAGCAGCTCTTGGATCAAGACTAGTTCGTTTGCTTATACTTCCAAATCTGGAGCCATATTTTCATCTACTTGAGCCCGAAATGCAGCTTGAAAAGCAAAAAAATGAAATAAAAAGGCAAGAAGCATGGCAAGTATACGGAGCCTTGCTGTGTGCAGTAGGCCAAAATATGCATGAAAAGGTCAAGAGATTCAGTAGTTTGCTATCTCCTCAAAGTCGTGCTACTTCAAGTGGCAATGGAAAAGCCATGATTGCAATGTCAGGTGGTACTGGGGTTGTGGTACCAATGAATTCCATGTCAGTTGACAACATGCAAGGGTCAACAAGTGGATTTCCCACCATGATGGGAGTTTCTAATTCAAGCGTCGGCATGTCATCATCAATGGGTCGTCAATTATCCAACGAAAACAACACTTCCTCTTCCATTCTAGCTCAGGCTTGGAAGGATGACATAGATGCAGGACAATTGCTACCACCAGTGTTTGAATTATTTGGCGAAAGTTTGTTATCGTTTATACCAAAACCTCAAGCATTTATATTTTTGTAA
Protein sequence

>MsG0380014332.01.T01

MSVIPKESIEVIAQTLGINNLSSDVALALSPDLEYRIREIMQESIKCMRHSMRTFLTTDDFDTALALRNLEPIYGFASNDPPRFKKASGHNDLFYIHDKDVDIKDLVEADLPKAPLDTSITSHWLAIEGVQPAIPENAPPEASTEIKNSEYKEDRLPVDIKLPVKHVITTELQLYYEKIIELILNKSGSILFRRALVTLATDSGLHPLVPYFTRFVADEVARNLNNLNILFALMRLVRSLLQNPHIHIELYLHQLMPPIITCIVAKRIGNRLSDNHWELRDFSANLVALICKRFGHMYHNLQPRVTKTFLHTFLDPTKALPQHYGAIKGIAALGSRLVRLLILPNLEPYFHLLEPEMQLEKQKNEIKRQEAWQVYGALLCAVGQNMHEKVKRFSSLLSPQSRATSSGNGKAMIAMSGGTGVVVPMNSMSVDNMQGSTSGFPTMMGVSNSSVGMSSSMGRQLSNENNTSSSILAQAWKDDIDAGQLLPPVFELFGESLLSFIPKPQAFIFL*