AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180004463.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004463.01.T01 MTR_1g080390 65.417 480 80 8 208 613 449 916 0.0 558
MsG0180004463.01.T01 MTR_1g080390 92.908 141 6 1 119 255 276 416 3.74e-79 270
MsG0180004463.01.T01 MTR_1g080390 59.091 110 30 4 1 97 1 108 5.21e-24 107
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180004463.01.T01 AT2G21440 62.500 208 76 2 280 487 582 787 2.81e-73 254
MsG0180004463.01.T01 AT2G21440 51.220 123 55 2 119 237 325 446 2.36e-29 124

Find 139 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTTCTGGGATGGGTATTT+TGG 0.157301 1:-78337662 MsG0180004463.01.T01:CDS
ACTGAATCTTTGTTCTTCTT+TGG 0.190926 1:+78335983 None:intergenic
GGGGTCCCCTTTCTGTCTTT+TGG 0.224958 1:+78336236 None:intergenic
TCAACTGCCAATACTGCTTC+TGG 0.228699 1:-78337676 MsG0180004463.01.T01:CDS
GGTAAGGGGTAGACCATTAA+AGG 0.238442 1:-78337641 MsG0180004463.01.T01:CDS
GTAATTTACCACCATGATTC+TGG 0.249095 1:+78336130 None:intergenic
AGAGCCTTTAAAACCTTTAA+TGG 0.253378 1:+78337628 None:intergenic
AAACTCAATGGATTGAAGTT+TGG 0.256721 1:-78340184 MsG0180004463.01.T01:CDS
AGGCCAAAGAAAATGAAATA+AGG 0.273524 1:-78340521 MsG0180004463.01.T01:CDS
AACTCAATGGATTGAAGTTT+GGG 0.302039 1:-78340183 MsG0180004463.01.T01:CDS
TTTCATCTGCGGGGACTGTA+TGG 0.307723 1:-78340491 MsG0180004463.01.T01:CDS
CACTTCGGTATTTGTACTCT+TGG 0.308629 1:+78336215 None:intergenic
TTCCTTTCCGAAGAAGCTTT+TGG 0.331812 1:+78336174 None:intergenic
TAACCAACCTGCCGAATTAC+AGG 0.333219 1:+78336988 None:intergenic
ACTTCGGTATTTGTACTCTT+GGG 0.335882 1:+78336216 None:intergenic
ATAGTTCCATTGACAGTAAT+AGG 0.336958 1:-78336095 MsG0180004463.01.T01:CDS
TGTCAGAAACCTTCCTTTCA+AGG 0.342388 1:-78340626 MsG0180004463.01.T01:intron
CACCATGATTCTGGCCATCT+TGG 0.351076 1:+78336139 None:intergenic
GAAGCAACGGTTTCTGCATT+TGG 0.354267 1:-78337879 MsG0180004463.01.T01:CDS
GTCGTCTCATAGCTGTTGAT+TGG 0.358840 1:-78340159 MsG0180004463.01.T01:CDS
AAGCAGGGGAAAAGGTTTCT+AGG 0.374787 1:-78336012 MsG0180004463.01.T01:CDS
GACAGTAATAGGAAAATATC+AGG 0.382523 1:-78336084 MsG0180004463.01.T01:CDS
ACCATGAAACAGCGTCTAAC+AGG 0.384092 1:+78343827 None:intergenic
GCTGAAACCCCTTCGGCAGC+TGG 0.384100 1:+78337408 None:intergenic
CTGAGAGTTAGTGAAGGAAT+AGG 0.388327 1:+78343971 None:intergenic
CTCTGAAGCAGGAGCATCAT+TGG 0.391724 1:+78340105 None:intergenic
AAAGGCTCTGGACAAGAAAT+CGG 0.400061 1:-78337614 MsG0180004463.01.T01:CDS
CCGTGTTCACTATTTGAATC+TGG 0.400337 1:+78336300 None:intergenic
ACCTGTTAGACGCTGTTTCA+TGG 0.405122 1:-78343828 MsG0180004463.01.T01:CDS
GAACAAACTTTCAGTGAAGT+TGG 0.409004 1:-78343851 MsG0180004463.01.T01:CDS
AAGCTTCCATTTCTGAGTCT+TGG 0.414414 1:+78340651 None:intergenic
AGACCACCGCAATCTTTACT+TGG 0.416144 1:-78337551 MsG0180004463.01.T01:CDS
AAACCGTTGCTTCACTTCTT+CGG 0.418498 1:+78337889 None:intergenic
ATTAGAAACAAGAGTGTTAA+CGG 0.428564 1:+78343998 None:intergenic
TGAGCTGAAGAACGGTTCAT+TGG 0.431497 1:-78342854 MsG0180004463.01.T01:CDS
GGCCAAAGAAAATGAAATAA+GGG 0.433746 1:-78340520 MsG0180004463.01.T01:CDS
AGAAAGTCCAAAAGCTTCTT+CGG 0.435552 1:-78336181 MsG0180004463.01.T01:CDS
CCAAGCAAATACCTGTAATT+CGG 0.436673 1:-78336999 MsG0180004463.01.T01:CDS
TTGGTCACTTGGTGGAGAAC+AGG 0.437156 1:+78337837 None:intergenic
CTTCATCATCGGCGAGGCGA+TGG 0.441652 1:-78344080 MsG0180004463.01.T01:exon
CAGGCGATTCGAAAACTCAA+TGG 0.448862 1:-78340196 MsG0180004463.01.T01:CDS
TGAAAACGAAGAAAGAAAGA+AGG 0.449178 1:+78344109 None:intergenic
CAACTGCCAATACTGCTTCT+GGG 0.451408 1:-78337675 MsG0180004463.01.T01:CDS
TGAGAGTTAGTGAAGGAATA+GGG 0.456317 1:+78343972 None:intergenic
TGAACCGTTCTTCAGCTCAA+TGG 0.460449 1:+78342858 None:intergenic
CTAGGACATACTTGGTCACT+TGG 0.461965 1:+78337826 None:intergenic
GCCAATACTGCTTCTGGGAT+GGG 0.465705 1:-78337670 MsG0180004463.01.T01:CDS
TAACGGCGGACATTGTTTAA+CGG 0.467270 1:+78344015 None:intergenic
ATCGGCTCATGACAAGGAAC+AGG 0.468605 1:-78337596 MsG0180004463.01.T01:CDS
ACCCATCCCAGAAGCAGTAT+TGG 0.471074 1:+78337669 None:intergenic
CCAAGAACAAGCAGGGGAAA+AGG 0.475052 1:-78336020 MsG0180004463.01.T01:CDS
CGTTCTTCAGCTCAATGGCT+TGG 0.475932 1:+78342863 None:intergenic
TAGGAGGGACTTATTCTTGA+CGG 0.477564 1:-78337435 MsG0180004463.01.T01:CDS
TCGAAGATCGAACCGGATCA+AGG 0.479403 1:-78342776 MsG0180004463.01.T01:intron
TGCAGGCGTCCACGAGGGAC+TGG 0.480915 1:-78337742 MsG0180004463.01.T01:intron
AACACGAAGTGCAAAACAAT+GGG 0.483173 1:+78341827 None:intergenic
GGCAAATCCAAAAGACAGAA+AGG 0.484725 1:-78336243 MsG0180004463.01.T01:CDS
TGCCAATACTGCTTCTGGGA+TGG 0.486395 1:-78337671 MsG0180004463.01.T01:CDS
CTGTTTCATGGTTACACAAA+GGG 0.487791 1:-78343816 MsG0180004463.01.T01:intron
TTTCATCTCTTCTTCATCAT+CGG 0.487880 1:-78344091 MsG0180004463.01.T01:five_prime_UTR
CTATTCCTTCACTAACTCTC+AGG 0.495586 1:-78343970 MsG0180004463.01.T01:intron
TAAGAAAGAAGACGCAGTAT+TGG 0.495952 1:-78336061 MsG0180004463.01.T01:CDS
GAAAACGAAGAAAGAAAGAA+GGG 0.497250 1:+78344110 None:intergenic
GATTTCTTTAGGACAACAAA+AGG 0.498067 1:-78338300 MsG0180004463.01.T01:intron
TCGTCTCATAGCTGTTGATT+GGG 0.499678 1:-78340158 MsG0180004463.01.T01:CDS
ACGGTTCATTGGTTGGTGAC+CGG 0.501056 1:-78342843 MsG0180004463.01.T01:CDS
AGGGAGCCAAGACTCAGAAA+TGG 0.503890 1:-78340657 MsG0180004463.01.T01:CDS
GCAAATCCAAAAGACAGAAA+GGG 0.507205 1:-78336242 MsG0180004463.01.T01:CDS
GGGAAAAGGTTTCTAGGAAA+AGG 0.509364 1:-78336006 MsG0180004463.01.T01:CDS
CCGAATTACAGGTATTTGCT+TGG 0.511846 1:+78336999 None:intergenic
CACGGTGGTAGAGTGCCAAA+TGG 0.516262 1:-78336282 MsG0180004463.01.T01:CDS
TCAACAGATCGAACCTTGAA+AGG 0.517773 1:+78340613 None:intergenic
TTCATCTGCGGGGACTGTAT+GGG 0.521165 1:-78340490 MsG0180004463.01.T01:CDS
AGCATCAATCAACCTTGATC+CGG 0.522255 1:+78342764 None:intergenic
TTCATCATCGGCGAGGCGAT+GGG 0.522399 1:-78344079 MsG0180004463.01.T01:exon
ATCAGTGGCTGAAACCCCTT+CGG 0.522666 1:+78337401 None:intergenic
GACGGAACTCCAGCTGCCGA+AGG 0.523716 1:-78337417 MsG0180004463.01.T01:CDS
CAATGATGCTCCTGCTTCAG+AGG 0.523848 1:-78340104 MsG0180004463.01.T01:CDS
CAGATCGAACCTTGAAAGGA+AGG 0.524767 1:+78340617 None:intergenic
GAAATATTTATAGTTTGGAA+AGG 0.525585 1:-78337155 MsG0180004463.01.T01:intron
CTTCGGTATTTGTACTCTTG+GGG 0.533027 1:+78336217 None:intergenic
AAGAAGAACAAAGATTCAGT+AGG 0.534680 1:-78335980 None:intergenic
AAATTACCTTCCTCTGAAGC+AGG 0.535871 1:+78340094 None:intergenic
TGCATTATCAGCTGCTTCCG+CGG 0.535875 1:+78337702 None:intergenic
ATGCATAACCAAGAACAAGC+AGG 0.537887 1:-78336028 MsG0180004463.01.T01:CDS
GCAAATACCTGTAATTCGGC+AGG 0.538494 1:-78336995 MsG0180004463.01.T01:CDS
AACCAAGATGGCCAGAATCA+TGG 0.540517 1:-78336141 MsG0180004463.01.T01:CDS
GTGAAAATCGAAGATCGAAC+CGG 0.542861 1:-78342783 MsG0180004463.01.T01:CDS
GATGCTCCTGCTTCAGAGGA+AGG 0.546927 1:-78340100 MsG0180004463.01.T01:intron
ACTGACAAAGAATCTGATCA+AGG 0.547224 1:-78338230 MsG0180004463.01.T01:CDS
GGACATACTTGGTCACTTGG+TGG 0.548184 1:+78337829 None:intergenic
ACGGAACTCCAGCTGCCGAA+GGG 0.553197 1:-78337416 MsG0180004463.01.T01:CDS
GAAGACGCAGTATTGGAAAG+AGG 0.560841 1:-78336054 MsG0180004463.01.T01:CDS
ATTCAAGAAAAGCGACTCCA+CGG 0.563574 1:+78336814 None:intergenic
CTGAAGAACGGTTCATTGGT+TGG 0.563589 1:-78342850 MsG0180004463.01.T01:CDS
CAAGAAATCGGCTCATGACA+AGG 0.564214 1:-78337602 MsG0180004463.01.T01:CDS
GTCCAAAAGCTTCTTCGGAA+AGG 0.566021 1:-78336176 MsG0180004463.01.T01:CDS
AGAAGAACAAAGATTCAGTA+GGG 0.570029 1:-78335979 None:intergenic
CAAATCCAAAAGACAGAAAG+GGG 0.571325 1:-78336241 MsG0180004463.01.T01:CDS
CATGGTGGTAAATTACATGA+AGG 0.571741 1:-78336123 MsG0180004463.01.T01:CDS
TGAAGATGGCAGGAAAGGAA+AGG 0.574176 1:-78336859 MsG0180004463.01.T01:CDS
TGCATAACCAAGAACAAGCA+GGG 0.575155 1:-78336027 MsG0180004463.01.T01:CDS
TGACAAACCAGCAAAAGACT+TGG 0.576336 1:-78336325 MsG0180004463.01.T01:CDS
CAACACGAAGTGCAAAACAA+TGG 0.579429 1:+78341826 None:intergenic
CTTCATACACTAACATGAGA+TGG 0.583548 1:+78341801 None:intergenic
TTCTTTCGATGAGATCACTT+CGG 0.585525 1:+78336200 None:intergenic
CCGCAATCTTTACTTGGCGA+AGG 0.588434 1:-78337545 MsG0180004463.01.T01:intron
CGGAACTCCAGCTGCCGAAG+GGG 0.589924 1:-78337415 MsG0180004463.01.T01:CDS
TTCAAGAAAAGCGACTCCAC+GGG 0.595349 1:+78336815 None:intergenic
TTGTCAAAATCATCGTCAGA+AGG 0.599134 1:+78338168 None:intergenic
CAAAAGGTGACAGATGAAGA+TGG 0.601633 1:-78338284 MsG0180004463.01.T01:CDS
TACCCTGTGTCGGACTTCTG+TGG 0.606080 1:+78340456 None:intergenic
ATTCCACAGAAGTCCGACAC+AGG 0.608649 1:-78340459 MsG0180004463.01.T01:CDS
AAGGAATATATACCCTGTGT+CGG 0.616888 1:+78340446 None:intergenic
ATACCTGTAATTCGGCAGGT+TGG 0.620183 1:-78336991 MsG0180004463.01.T01:intron
GAGTACCTGAGAGTTAGTGA+AGG 0.624188 1:+78343965 None:intergenic
CAAGCCATTGAGCTGAAGAA+CGG 0.627871 1:-78342862 MsG0180004463.01.T01:CDS
ATCTGCGGGGACTGTATGGG+AGG 0.628989 1:-78340487 MsG0180004463.01.T01:CDS
CCAAATGGAAAATCTCCTCA+AGG 0.629918 1:-78336267 MsG0180004463.01.T01:CDS
CCAGATTCAAATAGTGAACA+CGG 0.633933 1:-78336300 MsG0180004463.01.T01:CDS
CAAGAACAGCAGTATTCCCG+TGG 0.650331 1:-78336831 MsG0180004463.01.T01:CDS
AGATGGTAGTACTACTACTG+AGG 0.654593 1:-78338267 MsG0180004463.01.T01:CDS
TCTCTTCTTCATCATCGGCG+AGG 0.655928 1:-78344086 MsG0180004463.01.T01:five_prime_UTR
ATACCGAAGAAGTGAAGCAA+CGG 0.656518 1:-78337892 MsG0180004463.01.T01:CDS
TAGTGATATTGATAGTGTTG+TGG 0.658825 1:-78338201 MsG0180004463.01.T01:CDS
CTCAATGCAGGCGTCCACGA+GGG 0.661595 1:-78337747 MsG0180004463.01.T01:intron
TGATATTGATAGTGTTGTGG+AGG 0.663472 1:-78338198 MsG0180004463.01.T01:CDS
GCTGTTTCATGGTTACACAA+AGG 0.663551 1:-78343817 MsG0180004463.01.T01:CDS
TTCCACAGAAGTCCGACACA+GGG 0.667711 1:-78340458 MsG0180004463.01.T01:intron
TTAAGAAAACCAGTCCCTCG+TGG 0.669577 1:+78337733 None:intergenic
ATGAAGGAAAATAGCGACGA+CGG 0.674278 1:-78344040 MsG0180004463.01.T01:CDS
GCATAACCAAGAACAAGCAG+GGG 0.676330 1:-78336026 MsG0180004463.01.T01:CDS
ACTCAATGCAGGCGTCCACG+AGG 0.680693 1:-78337748 MsG0180004463.01.T01:intron
TCGCCAAGTAAAGATTGCGG+TGG 0.704028 1:+78337548 None:intergenic
AATGGAAAATCTCCTCAAGG+AGG 0.725686 1:-78336264 MsG0180004463.01.T01:CDS
CAAGATGGCCAGAATCATGG+TGG 0.728758 1:-78336138 MsG0180004463.01.T01:CDS
CCTTCGCCAAGTAAAGATTG+CGG 0.747025 1:+78337545 None:intergenic
AGAAACAAGAGTGTTAACGG+CGG 0.782809 1:+78344001 None:intergenic
GATTCAAATAGTGAACACGG+TGG 0.855909 1:-78336297 MsG0180004463.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAGAATGATAAATAAAAA+TGG + Chr1:78336189-78336208 None:intergenic 10.0%
!! TTATTATATTTATGTATATG+TGG + Chr1:78340955-78340974 None:intergenic 10.0%
!! TTCTAATAATATATGTAAAA+TGG + Chr1:78337141-78337160 None:intergenic 10.0%
!! TTTCATTAATAAATAGTTAT+TGG - Chr1:78340485-78340504 MsG0180004463.01.T01:CDS 10.0%
!!! AAAAATAAGTTTTTTTTTTC+AGG - Chr1:78336357-78336376 MsG0180004463.01.T01:intron 10.0%
!!! AAAAATTACTTATTTTAATG+AGG - Chr1:78341019-78341038 MsG0180004463.01.T01:intron 10.0%
!!! AAAATAAGTTTTTTTTTTCA+GGG - Chr1:78336358-78336377 MsG0180004463.01.T01:intron 10.0%
!!! AATGATTATTTTATTGAAAA+TGG + Chr1:78340444-78340463 None:intergenic 10.0%
!!! ACATAAAATAATTTTTTGTT+TGG - Chr1:78339518-78339537 MsG0180004463.01.T01:intron 10.0%
!!! TCTTTTAAATTGTAATTAAT+AGG - Chr1:78342646-78342665 MsG0180004463.01.T01:intron 10.0%
!!! TTTTGTATTGATTTTTAATT+TGG - Chr1:78339335-78339354 MsG0180004463.01.T01:intron 10.0%
!! AATTTACGAAATCAAATTAT+AGG + Chr1:78339271-78339290 None:intergenic 15.0%
!! ACTGATTAAAGATAAAAAAA+AGG - Chr1:78340981-78341000 MsG0180004463.01.T01:intron 15.0%
!! ATTAATAAATAGTTATTGGT+GGG - Chr1:78340489-78340508 MsG0180004463.01.T01:CDS 15.0%
!! ATTTCGATTATTATCAAATA+GGG + Chr1:78336606-78336625 None:intergenic 15.0%
!! CTGATTAAAGATAAAAAAAA+GGG - Chr1:78340982-78341001 MsG0180004463.01.T01:intron 15.0%
!! TATTTCGATTATTATCAAAT+AGG + Chr1:78336607-78336626 None:intergenic 15.0%
!! TCTATATAAAAGATACTATA+TGG + Chr1:78338820-78338839 None:intergenic 15.0%
!! TCTATTAAATATCATATCAT+AGG + Chr1:78336521-78336540 None:intergenic 15.0%
!! TTAAATTGTAATTAATAGGA+GGG - Chr1:78342650-78342669 MsG0180004463.01.T01:intron 15.0%
!! TTTAAATTGTAATTAATAGG+AGG - Chr1:78342649-78342668 MsG0180004463.01.T01:intron 15.0%
!! TTTGTGAAATATTTATAGTT+TGG - Chr1:78342940-78342959 MsG0180004463.01.T01:intron 15.0%
!!! CAATTTTTGAACTTTATTAT+AGG - Chr1:78336988-78337007 MsG0180004463.01.T01:intron 15.0%
!!! GATTTTTTGTATTTGATTTT+TGG + Chr1:78338968-78338987 None:intergenic 15.0%
!!! TATAATTTGATTTCGTAAAT+TGG - Chr1:78339270-78339289 MsG0180004463.01.T01:intron 15.0%
!! AATATCTTAATCTACAACAT+GGG + Chr1:78339135-78339154 None:intergenic 20.0%
!! AATGGTAATATTCATTAAAC+AGG + Chr1:78339382-78339401 None:intergenic 20.0%
!! ATGCATTGTCTTAAAAAATA+GGG - Chr1:78339033-78339052 MsG0180004463.01.T01:intron 20.0%
!! CAAAAAATCTTAATAACTAC+AGG - Chr1:78338979-78338998 MsG0180004463.01.T01:intron 20.0%
!! CATTAATAAATAGTTATTGG+TGG - Chr1:78340488-78340507 MsG0180004463.01.T01:CDS 20.0%
!! CATTGTACTAAATAACATAT+CGG + Chr1:78336694-78336713 None:intergenic 20.0%
!! GAAATATTTATAGTTTGGAA+AGG - Chr1:78342945-78342964 MsG0180004463.01.T01:intron 20.0%
!! GCATATCATAATTATTAAAC+AGG + Chr1:78338223-78338242 None:intergenic 20.0%
!! TAATATCACAATTGAGAAAT+GGG + Chr1:78343379-78343398 None:intergenic 20.0%
!! TATGCATTGTCTTAAAAAAT+AGG - Chr1:78339032-78339051 MsG0180004463.01.T01:intron 20.0%
!! TCAATGTGGAAAAAAAAATT+GGG - Chr1:78340365-78340384 MsG0180004463.01.T01:intron 20.0%
!! TGTGTATTAGTAGAAAAATA+CGG - Chr1:78340740-78340759 MsG0180004463.01.T01:intron 20.0%
!! TTGTAACATTCAAAACATAA+TGG + Chr1:78343198-78343217 None:intergenic 20.0%
!!! AAAATTGCACATTTTCAAAT+GGG - Chr1:78340780-78340799 MsG0180004463.01.T01:intron 20.0%
!!! AATTTTTTTTTCCACATTGA+GGG + Chr1:78340365-78340384 None:intergenic 20.0%
!!! AGCAATTTAAAGCAATTTAT+GGG + Chr1:78343435-78343454 None:intergenic 20.0%
!!! CAAAAAGTACTTTTTAAATG+AGG - Chr1:78341291-78341310 MsG0180004463.01.T01:intron 20.0%
!!! CAAAAAGTACTTTTTAATGA+AGG - Chr1:78341144-78341163 MsG0180004463.01.T01:intron 20.0%
!!! CTCATTTAAAAAGTACTTTT+TGG + Chr1:78341293-78341312 None:intergenic 20.0%
!!! CTTCATTAAAAAGTACTTTT+TGG + Chr1:78341146-78341165 None:intergenic 20.0%
!!! GTTTTGTGTATAATTGTTAT+TGG - Chr1:78338148-78338167 MsG0180004463.01.T01:CDS 20.0%
!!! GTTTTTGAAACATGAAAATT+TGG + Chr1:78342995-78343014 None:intergenic 20.0%
!!! TATTGTTTATAGTTTTGTTG+CGG + Chr1:78341081-78341100 None:intergenic 20.0%
!!! TCACTACTAAATATCTTTTT+TGG + Chr1:78339973-78339992 None:intergenic 20.0%
!!! TTAACATTTTTGTTGTATGT+GGG - Chr1:78339418-78339437 MsG0180004463.01.T01:intron 20.0%
!!! TTGATTTTTAATTTGGTCAT+AGG - Chr1:78339342-78339361 MsG0180004463.01.T01:intron 20.0%
! AAAAATGATGATAAAGACAG+CGG - Chr1:78337507-78337526 MsG0180004463.01.T01:intron 25.0%
! AAAAGAAAAAACATAGAGCA+AGG + Chr1:78337948-78337967 None:intergenic 25.0%
! AAAGATACATCCATAAAGAA+AGG + Chr1:78337887-78337906 None:intergenic 25.0%
! AAAGATTCTTTATACTGCTT+AGG - Chr1:78338578-78338597 MsG0180004463.01.T01:intron 25.0%
! AAATATGAACTGAAAAGAAC+AGG + Chr1:78338252-78338271 None:intergenic 25.0%
! AAATCCTATTGATGTAATTC+TGG - Chr1:78340263-78340282 MsG0180004463.01.T01:intron 25.0%
! AACAAACTAAGTGTCATAAA+TGG + Chr1:78339400-78339419 None:intergenic 25.0%
! AAGAAATGAGAATAGTAAAG+TGG + Chr1:78342811-78342830 None:intergenic 25.0%
! AAGCTAAAAAATAACCAAGA+TGG - Chr1:78343947-78343966 MsG0180004463.01.T01:intron 25.0%
! AATCCTATTGATGTAATTCT+GGG - Chr1:78340264-78340283 MsG0180004463.01.T01:intron 25.0%
! ACATCTGTTATGATTTCTTT+AGG - Chr1:78341789-78341808 MsG0180004463.01.T01:intron 25.0%
! ACATTGCATAAAAAAGAGAT+AGG - Chr1:78338711-78338730 MsG0180004463.01.T01:intron 25.0%
! ATACTCAACAATTGATCATA+TGG + Chr1:78338455-78338474 None:intergenic 25.0%
! CAATGTGGAAAAAAAAATTG+GGG - Chr1:78340366-78340385 MsG0180004463.01.T01:intron 25.0%
! CCATCAAAATATTGTGATTA+CGG + Chr1:78337103-78337122 None:intergenic 25.0%
! CTAATATCACAATTGAGAAA+TGG + Chr1:78343380-78343399 None:intergenic 25.0%
! CTCAATGTGGAAAAAAAAAT+TGG - Chr1:78340364-78340383 MsG0180004463.01.T01:intron 25.0%
! CTTTATATCTGGAAAAGAAA+AGG + Chr1:78339676-78339695 None:intergenic 25.0%
! GAATATCTTAATCTACAACA+TGG + Chr1:78339136-78339155 None:intergenic 25.0%
! GCAACAAAACTATAAACAAT+AGG - Chr1:78341080-78341099 MsG0180004463.01.T01:intron 25.0%
! TACTCAACAATTGATCATAT+GGG + Chr1:78338454-78338473 None:intergenic 25.0%
! TATCTAATTCAAAGGAAGAT+TGG + Chr1:78342191-78342210 None:intergenic 25.0%
! TCTATCTACTTGACTATATA+TGG - Chr1:78339552-78339571 MsG0180004463.01.T01:intron 25.0%
! TGAAAGATACTTAGAGAAAA+TGG - Chr1:78340924-78340943 MsG0180004463.01.T01:intron 25.0%
! TTAGGATAGTAAGGTAATTA+TGG - Chr1:78338596-78338615 MsG0180004463.01.T01:intron 25.0%
! TTTCAAATTACAGACAAGAT+AGG - Chr1:78338126-78338145 MsG0180004463.01.T01:intron 25.0%
!! ACTCTTTTTACTTACAAAGA+TGG + Chr1:78336829-78336848 None:intergenic 25.0%
!! AGCAAATTGTATTTTACCAA+AGG - Chr1:78341473-78341492 MsG0180004463.01.T01:intron 25.0%
!! ATTTAAAACCTCAAATGTGA+GGG - Chr1:78340875-78340894 MsG0180004463.01.T01:intron 25.0%
!! CAAAATTGCACATTTTCAAA+TGG - Chr1:78340779-78340798 MsG0180004463.01.T01:intron 25.0%
!! CTCTTTTTACTTACAAAGAT+GGG + Chr1:78336828-78336847 None:intergenic 25.0%
!! GAGCAATTTAAAGCAATTTA+TGG + Chr1:78343436-78343455 None:intergenic 25.0%
!! GCAAATTGTATTTTACCAAA+GGG - Chr1:78341474-78341493 MsG0180004463.01.T01:intron 25.0%
!! GCAATTTAAAGCAATTTATG+GGG + Chr1:78343434-78343453 None:intergenic 25.0%
!! TATTTTATTGAAAATGGTCG+TGG + Chr1:78340438-78340457 None:intergenic 25.0%
!! TATTTTCCTATTACTGTCAA+TGG + Chr1:78344014-78344033 None:intergenic 25.0%
!! TTCTTTTATGATGCAATAGA+GGG - Chr1:78337460-78337479 MsG0180004463.01.T01:intron 25.0%
!! TTTCTTTTATGATGCAATAG+AGG - Chr1:78337459-78337478 MsG0180004463.01.T01:intron 25.0%
!!! ATTAGAAACAAGAGTGTTAA+CGG + Chr1:78336105-78336124 None:intergenic 25.0%
!!! CAATTTTTTTTTCCACATTG+AGG + Chr1:78340366-78340385 None:intergenic 25.0%
!!! CTATGTTTTTTCTTTTGGTA+GGG - Chr1:78337952-78337971 MsG0180004463.01.T01:intron 25.0%
!!! GTTAACATTTTTGTTGTATG+TGG - Chr1:78339417-78339436 MsG0180004463.01.T01:intron 25.0%
!!! TAGACCATTAAAGGTTTTAA+AGG - Chr1:78342468-78342487 MsG0180004463.01.T01:intron 25.0%
!!! TCACATTTGAGGTTTTAAAT+GGG + Chr1:78340875-78340894 None:intergenic 25.0%
!!! TCTATGTTTTTTCTTTTGGT+AGG - Chr1:78337951-78337970 MsG0180004463.01.T01:intron 25.0%
!!! TTGCTCTATGTTTTTTCTTT+TGG - Chr1:78337947-78337966 MsG0180004463.01.T01:intron 25.0%
!!! TTTTCTTAAGTTTAAAACCG+CGG - Chr1:78342381-78342400 MsG0180004463.01.T01:intron 25.0%
AAAAATAGGGAGTTACATCA+TGG - Chr1:78339046-78339065 MsG0180004463.01.T01:intron 30.0%
AAAATAGGGAGTTACATCAT+GGG - Chr1:78339047-78339066 MsG0180004463.01.T01:intron 30.0%
AAAATCCAAGGAAACTGTTA+AGG - Chr1:78342060-78342079 MsG0180004463.01.T01:intron 30.0%
AAAATGATAAACCGACAATG+CGG - Chr1:78343706-78343725 MsG0180004463.01.T01:intron 30.0%
AAATACGGTCAAAGTAAGTT+AGG - Chr1:78340755-78340774 MsG0180004463.01.T01:intron 30.0%
AAATCCAAGGAAACTGTTAA+GGG - Chr1:78342061-78342080 MsG0180004463.01.T01:intron 30.0%
AAGAGTGAGAAAAGAAAACA+AGG + Chr1:78337441-78337460 None:intergenic 30.0%
AATACTAAACATGCTACTGT+TGG - Chr1:78336910-78336929 MsG0180004463.01.T01:intron 30.0%
AATCTACAACATGGGAAATT+AGG + Chr1:78339127-78339146 None:intergenic 30.0%
AATTGTTGAGTATGCTGATA+AGG - Chr1:78338462-78338481 MsG0180004463.01.T01:intron 30.0%
ACCACATATTGTTCTAATGT+CGG + Chr1:78341705-78341724 None:intergenic 30.0%
ACTGAATCTTTGTTCTTCTT+TGG + Chr1:78344120-78344139 None:intergenic 30.0%
ACTTGACTATATATGGATAC+AGG - Chr1:78339559-78339578 MsG0180004463.01.T01:intron 30.0%
AGAGTGAGAAAAGAAAACAA+GGG + Chr1:78337440-78337459 None:intergenic 30.0%
AGCTACAAAATGTTCTATGA+AGG - Chr1:78341389-78341408 MsG0180004463.01.T01:intron 30.0%
AGGAGAATATTGATATCATG+AGG - Chr1:78336951-78336970 MsG0180004463.01.T01:intron 30.0%
AGGCCAAAGAAAATGAAATA+AGG - Chr1:78339579-78339598 MsG0180004463.01.T01:intron 30.0%
AGTCAAGTAGATAGAAAACA+AGG + Chr1:78339547-78339566 None:intergenic 30.0%
ATAGTTCCATTGACAGTAAT+AGG - Chr1:78344005-78344024 MsG0180004463.01.T01:CDS 30.0%
ATCCAAACTTTCACTTCTAA+AGG + Chr1:78337672-78337691 None:intergenic 30.0%
CAAATCATCTGTACATCATT+CGG + Chr1:78337400-78337419 None:intergenic 30.0%
CAAATTGCACTTACCAAAAA+TGG + Chr1:78336855-78336874 None:intergenic 30.0%
CAAGAAAAACAAAGCAATGA+AGG - Chr1:78336044-78336063 MsG0180004463.01.T01:CDS 30.0%
CACACACAAAATATTGTTCT+AGG + Chr1:78342295-78342314 None:intergenic 30.0%
CTCTATCAAAAGGTCTAAAT+GGG + Chr1:78340516-78340535 None:intergenic 30.0%
GAAAACGAAGAAAGAAAGAA+GGG + Chr1:78335993-78336012 None:intergenic 30.0%
GACAGTAATAGGAAAATATC+AGG - Chr1:78344016-78344035 MsG0180004463.01.T01:CDS 30.0%
GGCCAAAGAAAATGAAATAA+GGG - Chr1:78339580-78339599 MsG0180004463.01.T01:intron 30.0%
GTATTTGATCTTCCATACTT+GGG - Chr1:78342845-78342864 MsG0180004463.01.T01:CDS 30.0%
GTTATTTACAGATTCGTCTT+TGG + Chr1:78342008-78342027 None:intergenic 30.0%
GTTGCTAGAACTGTTATATT+TGG - Chr1:78337974-78337993 MsG0180004463.01.T01:intron 30.0%
TGAAAACGAAGAAAGAAAGA+AGG + Chr1:78335994-78336013 None:intergenic 30.0%
TGTATTTGATCTTCCATACT+TGG - Chr1:78342844-78342863 MsG0180004463.01.T01:CDS 30.0%
TTAAGCTCAAAGTTATGCAT+TGG + Chr1:78340619-78340638 None:intergenic 30.0%
TTATACTGCTTAGGATAGTA+AGG - Chr1:78338587-78338606 MsG0180004463.01.T01:intron 30.0%
TTCAGTCTTAACAATAATCC+TGG - Chr1:78343339-78343358 MsG0180004463.01.T01:intron 30.0%
TTCTTCGGTATCTAATTCAA+AGG + Chr1:78342199-78342218 None:intergenic 30.0%
TTGATCTGATCCTTTCTTTA+TGG - Chr1:78337874-78337893 MsG0180004463.01.T01:CDS 30.0%
TTGCACGTTCATTCAAAAAA+TGG + Chr1:78340167-78340186 None:intergenic 30.0%
TTGCATAAAAAAGAGATAGG+AGG - Chr1:78338714-78338733 MsG0180004463.01.T01:intron 30.0%
TTTCATCTCTTCTTCATCAT+CGG - Chr1:78336009-78336028 MsG0180004463.01.T01:CDS 30.0%
! AGAAATATCTGAAACCTTGT+CGG + Chr1:78342113-78342132 None:intergenic 30.0%
! ATCTCTATCTGAAACAGAAT+TGG + Chr1:78337363-78337382 None:intergenic 30.0%
! CATTTAAAACCTCAAATGTG+AGG - Chr1:78340874-78340893 MsG0180004463.01.T01:intron 30.0%
! CGCAAAAAGTGAGTATTTTA+TGG - Chr1:78342731-78342750 MsG0180004463.01.T01:intron 30.0%
! GTAATTATGGTATTTTTCCC+AGG - Chr1:78338609-78338628 MsG0180004463.01.T01:intron 30.0%
! GTTGATAGAAATGTTGAACA+GGG + Chr1:78339239-78339258 None:intergenic 30.0%
! GTTTTGTCAAATAACAGCTA+TGG - Chr1:78336541-78336560 MsG0180004463.01.T01:intron 30.0%
! TTAACAGTTTCCTTGGATTT+TGG + Chr1:78342061-78342080 None:intergenic 30.0%
! TTCCTTTAGAAGTGAAAGTT+TGG - Chr1:78337667-78337686 MsG0180004463.01.T01:CDS 30.0%
!! AAACTCAATGGATTGAAGTT+TGG - Chr1:78339916-78339935 MsG0180004463.01.T01:intron 30.0%
!! AAATGATTTTGACACTTGTG+AGG + Chr1:78340198-78340217 None:intergenic 30.0%
!! AACTCAATGGATTGAAGTTT+GGG - Chr1:78339917-78339936 MsG0180004463.01.T01:intron 30.0%
!! AGAGCCTTTAAAACCTTTAA+TGG + Chr1:78342475-78342494 None:intergenic 30.0%
!! AGTTGATAGAAATGTTGAAC+AGG + Chr1:78339240-78339259 None:intergenic 30.0%
!! ATAAAGATTTTGAAGATGGC+AGG - Chr1:78343231-78343250 MsG0180004463.01.T01:intron 30.0%
!! ATATTGTTCTAGGACATACT+TGG + Chr1:78342285-78342304 None:intergenic 30.0%
!! CCGTAATCACAATATTTTGA+TGG - Chr1:78337100-78337119 MsG0180004463.01.T01:CDS 30.0%
!! GATTTCTTTAGGACAACAAA+AGG - Chr1:78341800-78341819 MsG0180004463.01.T01:intron 30.0%
!! GCAGATAAAGATTTTGAAGA+TGG - Chr1:78343227-78343246 MsG0180004463.01.T01:intron 30.0%
!! GTCCCTTATTTCATTTTCTT+TGG + Chr1:78339585-78339604 None:intergenic 30.0%
!! TAAAAAGAGTTCGCCATTTT+TGG - Chr1:78336839-78336858 MsG0180004463.01.T01:CDS 30.0%
!! TAGTGATATTGATAGTGTTG+TGG - Chr1:78341899-78341918 MsG0180004463.01.T01:intron 30.0%
!!! ATTAAAGGTTTTAAAGGCTC+TGG - Chr1:78342474-78342493 MsG0180004463.01.T01:intron 30.0%
!!! CTCACATTTGAGGTTTTAAA+TGG + Chr1:78340876-78340895 None:intergenic 30.0%
!!! TGTTTTTCAGTCATTGACTT+TGG + Chr1:78343040-78343059 None:intergenic 30.0%
AAAAAAGTGATGTGTCCATG+TGG - Chr1:78340847-78340866 MsG0180004463.01.T01:intron 35.0%
AAAACAACATAGTTGCCCTT+TGG + Chr1:78341492-78341511 None:intergenic 35.0%
AAAGAACAAGCCAAAATCCA+AGG - Chr1:78342048-78342067 MsG0180004463.01.T01:intron 35.0%
AAATGATAAACCGACAATGC+GGG - Chr1:78343707-78343726 MsG0180004463.01.T01:intron 35.0%
AACACGAAGTGCAAAACAAT+GGG + Chr1:78338276-78338295 None:intergenic 35.0%
AAGGAATATATACCCTGTGT+CGG + Chr1:78339657-78339676 None:intergenic 35.0%
ACGCTGATATAGCTACTATT+TGG + Chr1:78336719-78336738 None:intergenic 35.0%
ACGTATCAGAATCAGATACA+AGG + Chr1:78339178-78339197 None:intergenic 35.0%
ACTGACAAAGAATCTGATCA+AGG - Chr1:78341870-78341889 MsG0180004463.01.T01:intron 35.0%
ACTTCGGTATTTGTACTCTT+GGG + Chr1:78343887-78343906 None:intergenic 35.0%
AGAAAGTCCAAAAGCTTCTT+CGG - Chr1:78343919-78343938 MsG0180004463.01.T01:intron 35.0%
AGACCCAGAATTACATCAAT+AGG + Chr1:78340270-78340289 None:intergenic 35.0%
AGATCACTACAATCAGTTAC+AGG + Chr1:78342910-78342929 None:intergenic 35.0%
AGCACATATTGTTCTAGTGT+TGG + Chr1:78341615-78341634 None:intergenic 35.0%
AGTGCTTGCTTCAATAGTAT+CGG - Chr1:78337025-78337044 MsG0180004463.01.T01:CDS 35.0%
ATTGCTAGCATTTCTATGTG+CGG - Chr1:78343511-78343530 MsG0180004463.01.T01:intron 35.0%
CAAATCATCTTCTGTTTCCT+TGG + Chr1:78342149-78342168 None:intergenic 35.0%
CAAATCCAAAAGACAGAAAG+GGG - Chr1:78343859-78343878 MsG0180004463.01.T01:intron 35.0%
CACCAAAAAAAACCCTTTCA+AGG + Chr1:78339100-78339119 None:intergenic 35.0%
CATAAAAAAGAGATAGGAGG+AGG - Chr1:78338717-78338736 MsG0180004463.01.T01:intron 35.0%
CATGGTGGTAAATTACATGA+AGG - Chr1:78343977-78343996 MsG0180004463.01.T01:CDS 35.0%
CCAAGCAAATACCTGTAATT+CGG - Chr1:78343101-78343120 MsG0180004463.01.T01:intron 35.0%
CCACATATTGTTCTAATGTC+GGG + Chr1:78341704-78341723 None:intergenic 35.0%
CCAGATTCAAATAGTGAACA+CGG - Chr1:78343800-78343819 MsG0180004463.01.T01:intron 35.0%
CCTCTATCAAAAGGTCTAAA+TGG + Chr1:78340517-78340536 None:intergenic 35.0%
CGTTACGAAGTTTCAATTTC+TGG + Chr1:78343635-78343654 None:intergenic 35.0%
CTGAAGATCATTCCTTGAAA+GGG + Chr1:78338080-78338099 None:intergenic 35.0%
CTGGGTCTTAGATTTATAGA+AGG - Chr1:78340282-78340301 MsG0180004463.01.T01:intron 35.0%
CTGTTTCATGGTTACACAAA+GGG - Chr1:78336284-78336303 MsG0180004463.01.T01:CDS 35.0%
CTTCATACACTAACATGAGA+TGG + Chr1:78338302-78338321 None:intergenic 35.0%
GAACAAACTTTCAGTGAAGT+TGG - Chr1:78336249-78336268 MsG0180004463.01.T01:CDS 35.0%
GACACAATACATCATGAAGA+AGG - Chr1:78341226-78341245 MsG0180004463.01.T01:intron 35.0%
GCAAATCCAAAAGACAGAAA+GGG - Chr1:78343858-78343877 MsG0180004463.01.T01:intron 35.0%
GCACATATTGTTCTAGTGTT+GGG + Chr1:78341614-78341633 None:intergenic 35.0%
GCTAGAACTGTTATATTTGG+TGG - Chr1:78337977-78337996 MsG0180004463.01.T01:intron 35.0%
GTAATTTACCACCATGATTC+TGG + Chr1:78343973-78343992 None:intergenic 35.0%
GTATCGAAACGCTTTATATC+TGG + Chr1:78339687-78339706 None:intergenic 35.0%
GTCAACTGTGTCAAGTATAT+GGG + Chr1:78340583-78340602 None:intergenic 35.0%
GTGGTGAGTATTAATCATTC+AGG + Chr1:78336803-78336822 None:intergenic 35.0%
TAAGAAAGAAGACGCAGTAT+TGG - Chr1:78344039-78344058 MsG0180004463.01.T01:CDS 35.0%
TACTAGCTGTGTTAATTGTC+TGG - Chr1:78343408-78343427 MsG0180004463.01.T01:intron 35.0%
TATGGTAGCTGATATGCAAT+AGG - Chr1:78342610-78342629 MsG0180004463.01.T01:intron 35.0%
TCAAAAATTGTATCCCTCCT+CGG + Chr1:78336978-78336997 None:intergenic 35.0%
TCTTACTGTTGTATGTGCAT+TGG + Chr1:78341437-78341456 None:intergenic 35.0%
TGAAGATCATTCCTTGAAAG+GGG + Chr1:78338079-78338098 None:intergenic 35.0%
TGAGAGTTAGTGAAGGAATA+GGG + Chr1:78336131-78336150 None:intergenic 35.0%
TGCAATTTGAGTGTATTGTC+TGG - Chr1:78336866-78336885 MsG0180004463.01.T01:CDS 35.0%
TGGATAAACCGAAAAACTCA+AGG - Chr1:78337687-78337706 MsG0180004463.01.T01:CDS 35.0%
TTCAGTTCCAAAAGAACCAA+AGG - Chr1:78337554-78337573 MsG0180004463.01.T01:CDS 35.0%
TTCTTTCGATGAGATCACTT+CGG + Chr1:78343903-78343922 None:intergenic 35.0%
TTGTCAAAATCATCGTCAGA+AGG + Chr1:78341935-78341954 None:intergenic 35.0%
TTGTCAAATAACAGCTATGG+TGG - Chr1:78336544-78336563 MsG0180004463.01.T01:intron 35.0%
! CATTTTGTAGCTATGATGCA+TGG + Chr1:78341381-78341400 None:intergenic 35.0%
! CCATTTAGACCTTTTGATAG+AGG - Chr1:78340514-78340533 MsG0180004463.01.T01:CDS 35.0%
! GATGAGATAGTTTTCCAGTT+AGG - Chr1:78338517-78338536 MsG0180004463.01.T01:intron 35.0%
! GCTGAAGTACTACTAAGAAA+AGG + Chr1:78337800-78337819 None:intergenic 35.0%
! GGTCTTTAACATTTAAGACC+CGG - Chr1:78340326-78340345 MsG0180004463.01.T01:CDS 35.0%
! GTTCTTTTCTTCAGAAGACA+CGG + Chr1:78342035-78342054 None:intergenic 35.0%
!! CGGTAGTTTGTAATTTGTTG+TGG + Chr1:78341061-78341080 None:intergenic 35.0%
!! TAAGTTCCTGTTTCTGTTTC+AGG - Chr1:78339885-78339904 MsG0180004463.01.T01:intron 35.0%
!! TGATATTGATAGTGTTGTGG+AGG - Chr1:78341902-78341921 MsG0180004463.01.T01:intron 35.0%
!! TTACTTACAAAGATGGGTTG+TGG + Chr1:78336822-78336841 None:intergenic 35.0%
!! TTCTGACGATGATTTTGACA+AGG - Chr1:78341934-78341953 MsG0180004463.01.T01:intron 35.0%
!! TTCTTGATTTGCATCCTAAC+TGG + Chr1:78338534-78338553 None:intergenic 35.0%
!! TTTGCGTTTTGACATATCAG+TGG + Chr1:78342717-78342736 None:intergenic 35.0%
!!! AGCCTTGAAAGGGTTTTTTT+TGG - Chr1:78339095-78339114 MsG0180004463.01.T01:intron 35.0%
!!! GCTGCTTTTTTTATTTCCAC+AGG + Chr1:78337716-78337735 None:intergenic 35.0%
AAAAGCTACAGTATCAGCAG+CGG - Chr1:78343655-78343674 MsG0180004463.01.T01:intron 40.0%
AAACCGTTGCTTCACTTCTT+CGG + Chr1:78342214-78342233 None:intergenic 40.0%
AAACCTTTGGTCCTGAACAT+CGG - Chr1:78343581-78343600 MsG0180004463.01.T01:intron 40.0%
AACATCTAAAGAGTCCGACA+AGG - Chr1:78342096-78342115 MsG0180004463.01.T01:intron 40.0%
AAGCTTCCATTTCTGAGTCT+TGG + Chr1:78339452-78339471 None:intergenic 40.0%
AATGGAAAATCTCCTCAAGG+AGG - Chr1:78343836-78343855 MsG0180004463.01.T01:CDS 40.0%
AATTGGGGTCTCTTAAGACT+CGG - Chr1:78340381-78340400 MsG0180004463.01.T01:intron 40.0%
ACTCCTCTATTACTCAATGC+AGG - Chr1:78342341-78342360 MsG0180004463.01.T01:intron 40.0%
ACTGTGTCAAGTATATGGGA+CGG + Chr1:78340579-78340598 None:intergenic 40.0%
AGATGGTAGTACTACTACTG+AGG - Chr1:78341833-78341852 MsG0180004463.01.T01:CDS 40.0%
AGCATCAATCAACCTTGATC+CGG + Chr1:78337339-78337358 None:intergenic 40.0%
ATAACTTTACCGCCCAAGTA+TGG + Chr1:78342860-78342879 None:intergenic 40.0%
ATACCGAAGAAGTGAAGCAA+CGG - Chr1:78342208-78342227 MsG0180004463.01.T01:intron 40.0%
ATGAAGGAAAATAGCGACGA+CGG - Chr1:78336060-78336079 MsG0180004463.01.T01:CDS 40.0%
ATGCATAACCAAGAACAAGC+AGG - Chr1:78344072-78344091 MsG0180004463.01.T01:exon 40.0%
ATTCAAGAAAAGCGACTCCA+CGG + Chr1:78343289-78343308 None:intergenic 40.0%
CAAAAGGTGACAGATGAAGA+TGG - Chr1:78341816-78341835 MsG0180004463.01.T01:CDS 40.0%
CAACACGAAGTGCAAAACAA+TGG + Chr1:78338277-78338296 None:intergenic 40.0%
CAATGGAGACCTCTATCAAA+AGG + Chr1:78340526-78340545 None:intergenic 40.0%
CACTTCGGTATTTGTACTCT+TGG + Chr1:78343888-78343907 None:intergenic 40.0%
CCAAAAGAACCAAAGGAAGA+AGG - Chr1:78337561-78337580 MsG0180004463.01.T01:CDS 40.0%
CCAAATGGAAAATCTCCTCA+AGG - Chr1:78343833-78343852 MsG0180004463.01.T01:CDS 40.0%
CCCGACATTAGAACAATATG+TGG - Chr1:78341701-78341720 MsG0180004463.01.T01:intron 40.0%
CCGAATTACAGGTATTTGCT+TGG + Chr1:78343104-78343123 None:intergenic 40.0%
CCGTGTTCACTATTTGAATC+TGG + Chr1:78343803-78343822 None:intergenic 40.0%
CTATTAAGCATCCCCTTTCA+AGG - Chr1:78338065-78338084 MsG0180004463.01.T01:intron 40.0%
CTATTCCTTCACTAACTCTC+AGG - Chr1:78336130-78336149 MsG0180004463.01.T01:CDS 40.0%
CTGAGAGTTAGTGAAGGAAT+AGG + Chr1:78336132-78336151 None:intergenic 40.0%
CTTAAGACCCCAATCTTAAG+TGG - Chr1:78340411-78340430 MsG0180004463.01.T01:intron 40.0%
CTTCAAAAATGGACAACCAC+AGG + Chr1:78341331-78341350 None:intergenic 40.0%
CTTCGGTATTTGTACTCTTG+GGG + Chr1:78343886-78343905 None:intergenic 40.0%
GATTCAAATAGTGAACACGG+TGG - Chr1:78343803-78343822 MsG0180004463.01.T01:intron 40.0%
GCAGTATGTACACATGTTTC+TGG - Chr1:78341538-78341557 MsG0180004463.01.T01:intron 40.0%
GCTGAAGATCATTCCTTGAA+AGG + Chr1:78338081-78338100 None:intergenic 40.0%
GGCAAATCCAAAAGACAGAA+AGG - Chr1:78343857-78343876 MsG0180004463.01.T01:CDS 40.0%
GGTCAACTGTGTCAAGTATA+TGG + Chr1:78340584-78340603 None:intergenic 40.0%
GGTTCACAAGCTTAGTTAAG+AGG - Chr1:78336931-78336950 MsG0180004463.01.T01:intron 40.0%
GTGAAAATCGAAGATCGAAC+CGG - Chr1:78337317-78337336 MsG0180004463.01.T01:intron 40.0%
GTGAGAAAAGAAAACAAGGG+AGG + Chr1:78337437-78337456 None:intergenic 40.0%
GTGATAACTGCTAGCTGATT+AGG - Chr1:78338840-78338859 MsG0180004463.01.T01:intron 40.0%
GTGCTTGCTTCAATAGTATC+GGG - Chr1:78337026-78337045 MsG0180004463.01.T01:CDS 40.0%
TAACGGCGGACATTGTTTAA+CGG + Chr1:78336088-78336107 None:intergenic 40.0%
TAGGAGGGACTTATTCTTGA+CGG - Chr1:78342665-78342684 MsG0180004463.01.T01:intron 40.0%
TATTGATATCATGAGGACCG+AGG - Chr1:78336958-78336977 MsG0180004463.01.T01:intron 40.0%
TCAACAGATCGAACCTTGAA+AGG + Chr1:78339490-78339509 None:intergenic 40.0%
TCATTGACCACAGAAACCTT+TGG - Chr1:78343568-78343587 MsG0180004463.01.T01:intron 40.0%
TCTGTTTCCTTGGAAGTTTC+AGG + Chr1:78342139-78342158 None:intergenic 40.0%
TGACAAACCAGCAAAAGACT+TGG - Chr1:78343775-78343794 MsG0180004463.01.T01:intron 40.0%
TGCATAACCAAGAACAAGCA+GGG - Chr1:78344073-78344092 MsG0180004463.01.T01:exon 40.0%
TGTAATGACACAGCAGATGA+GGG - Chr1:78337740-78337759 MsG0180004463.01.T01:CDS 40.0%
TGTCAGAAACCTTCCTTTCA+AGG - Chr1:78339474-78339493 MsG0180004463.01.T01:intron 40.0%
TGTTAAAGACCCTACCAATG+TGG + Chr1:78340317-78340336 None:intergenic 40.0%
TTCTAAGCCTGAAACTTCCA+AGG - Chr1:78342129-78342148 MsG0180004463.01.T01:intron 40.0%
TTGTAATGACACAGCAGATG+AGG - Chr1:78337739-78337758 MsG0180004463.01.T01:CDS 40.0%
TTTGATCTTCCATACTTGGG+CGG - Chr1:78342848-78342867 MsG0180004463.01.T01:CDS 40.0%
! ACAGGCTTCCTTGAGTTTTT+CGG + Chr1:78337698-78337717 None:intergenic 40.0%
! ATGCATTGGCATGCGTAATA+AGG + Chr1:78340605-78340624 None:intergenic 40.0%
! ATTTTCAGCATCTTGCTTGC+AGG + Chr1:78339797-78339816 None:intergenic 40.0%
! CCTTGAGGAGATTTTCCATT+TGG + Chr1:78343836-78343855 None:intergenic 40.0%
! CGTGCTTCACTACAATTTTC+CGG + Chr1:78337279-78337298 None:intergenic 40.0%
! CTTTTGATAGAGGTCTCCAT+TGG - Chr1:78340524-78340543 MsG0180004463.01.T01:intron 40.0%
! GCTGTTTCATGGTTACACAA+AGG - Chr1:78336283-78336302 MsG0180004463.01.T01:CDS 40.0%
! GGGAAAAGGTTTCTAGGAAA+AGG - Chr1:78344094-78344113 MsG0180004463.01.T01:five_prime_UTR 40.0%
! GGTTCGATCTTCGATTTTCA+CGG + Chr1:78337318-78337337 None:intergenic 40.0%
! GTTCGATCTTCGATTTTCAC+GGG + Chr1:78337317-78337336 None:intergenic 40.0%
! TCGTCTCATAGCTGTTGATT+GGG - Chr1:78339942-78339961 MsG0180004463.01.T01:intron 40.0%
! TCTACACAACATCGTGGTTT+TGG - Chr1:78336381-78336400 MsG0180004463.01.T01:intron 40.0%
! TGGGTGTAATTGTTGTTACC+AGG + Chr1:78343360-78343379 None:intergenic 40.0%
! TTCCTTTCCGAAGAAGCTTT+TGG + Chr1:78343929-78343948 None:intergenic 40.0%
! TTCGATCTTCGATTTTCACG+GGG + Chr1:78337316-78337335 None:intergenic 40.0%
! TTTAAGACCCGGTACCTAAT+AGG - Chr1:78340337-78340356 MsG0180004463.01.T01:intron 40.0%
!! AAAGGCTCTGGACAAGAAAT+CGG - Chr1:78342486-78342505 MsG0180004463.01.T01:intron 40.0%
!! AAATTACCTTCCTCTGAAGC+AGG + Chr1:78340009-78340028 None:intergenic 40.0%
!! AGAAACAAGAGTGTTAACGG+CGG + Chr1:78336102-78336121 None:intergenic 40.0%
!! ATTCGGCAGGTTGGTTAAAT+AGG - Chr1:78343118-78343137 MsG0180004463.01.T01:intron 40.0%
!! ATTTTTGTTGTATGTGGGCC+AGG - Chr1:78339423-78339442 MsG0180004463.01.T01:intron 40.0%
!! GATTTTGAAGATGGCAGGAA+AGG - Chr1:78343236-78343255 MsG0180004463.01.T01:intron 40.0%
!! TAAGAGCATCCACATTGGTA+GGG - Chr1:78340305-78340324 MsG0180004463.01.T01:intron 40.0%
!! TTTTTGTTGTATGTGGGCCA+GGG - Chr1:78339424-78339443 MsG0180004463.01.T01:intron 40.0%
!!! CCTTCTTCCTTTGGTTCTTT+TGG + Chr1:78337564-78337583 None:intergenic 40.0%
!!! GGTTCTTTTGGAACTGAAAC+AGG + Chr1:78337552-78337571 None:intergenic 40.0%
!!! GGTTTTAAATGGGTTCCACA+TGG + Chr1:78340865-78340884 None:intergenic 40.0%
!!! TGGGATGGGTATTTTGGTAA+GGG - Chr1:78342444-78342463 MsG0180004463.01.T01:intron 40.0%
AAAGCTACAGTATCAGCAGC+GGG - Chr1:78343656-78343675 MsG0180004463.01.T01:intron 45.0%
AAATGTGAGGGTCTCCATTG+TGG - Chr1:78340887-78340906 MsG0180004463.01.T01:intron 45.0%
AACCAAGATGGCCAGAATCA+TGG - Chr1:78343959-78343978 MsG0180004463.01.T01:intron 45.0%
AAGCAGGGGAAAAGGTTTCT+AGG - Chr1:78344088-78344107 MsG0180004463.01.T01:five_prime_UTR 45.0%
AATGGAGACCCTCACATTTG+AGG + Chr1:78340886-78340905 None:intergenic 45.0%
ACCATGAAACAGCGTCTAAC+AGG + Chr1:78336276-78336295 None:intergenic 45.0%
ACGCCTGCATTGAGTAATAG+AGG + Chr1:78342347-78342366 None:intergenic 45.0%
AGACCACCGCAATCTTTACT+TGG - Chr1:78342549-78342568 MsG0180004463.01.T01:intron 45.0%
AGATAGGAGGAGGAACTGTT+GGG - Chr1:78338727-78338746 MsG0180004463.01.T01:intron 45.0%
AGGAATGATCTTCAGCAGCA+TGG - Chr1:78338085-78338104 MsG0180004463.01.T01:intron 45.0%
ATACCTGTAATTCGGCAGGT+TGG - Chr1:78343109-78343128 MsG0180004463.01.T01:intron 45.0%
ATTGGGGTCTCTTAAGACTC+GGG - Chr1:78340382-78340401 MsG0180004463.01.T01:intron 45.0%
CAACTGCCAATACTGCTTCT+GGG - Chr1:78342425-78342444 MsG0180004463.01.T01:intron 45.0%
CAAGCCATTGAGCTGAAGAA+CGG - Chr1:78337238-78337257 MsG0180004463.01.T01:intron 45.0%
CAGATCGAACCTTGAAAGGA+AGG + Chr1:78339486-78339505 None:intergenic 45.0%
CAGGCGATTCGAAAACTCAA+TGG - Chr1:78339904-78339923 MsG0180004463.01.T01:intron 45.0%
CCTAATAGGTACCCTCAATG+TGG - Chr1:78340351-78340370 MsG0180004463.01.T01:intron 45.0%
CCTGTGTGCAGTCTTTCAAA+GGG - Chr1:78339753-78339772 MsG0180004463.01.T01:intron 45.0%
CCTTCGCCAAGTAAAGATTG+CGG + Chr1:78342558-78342577 None:intergenic 45.0%
CTAGGACATACTTGGTCACT+TGG + Chr1:78342277-78342296 None:intergenic 45.0%
CTCGTCATAGAACACATCAG+AGG - Chr1:78338778-78338797 MsG0180004463.01.T01:intron 45.0%
CTGAAGAACGGTTCATTGGT+TGG - Chr1:78337250-78337269 MsG0180004463.01.T01:intron 45.0%
CTGCGTGTTGTGGTAATTTG+TGG - Chr1:78337068-78337087 MsG0180004463.01.T01:CDS 45.0%
GAAAAACTCAAGGAAGCCTG+TGG - Chr1:78337697-78337716 MsG0180004463.01.T01:CDS 45.0%
GAACCAAAGGAAGAAGGTTG+CGG - Chr1:78337567-78337586 MsG0180004463.01.T01:CDS 45.0%
GAAGCAACGGTTTCTGCATT+TGG - Chr1:78342221-78342240 MsG0180004463.01.T01:intron 45.0%
GAATCGCCTGAAACAGAAAC+AGG + Chr1:78339894-78339913 None:intergenic 45.0%
GAGGTCACTGTTATGGTGAA+GGG + Chr1:78341255-78341274 None:intergenic 45.0%
GAGTACCTGAGAGTTAGTGA+AGG + Chr1:78336138-78336157 None:intergenic 45.0%
GATGCAATAGAGGGCAATGA+AGG - Chr1:78337469-78337488 MsG0180004463.01.T01:intron 45.0%
GCAAATACCTGTAATTCGGC+AGG - Chr1:78343105-78343124 MsG0180004463.01.T01:intron 45.0%
GCAATGTTGCAACAGAAGCA+CGG + Chr1:78338698-78338717 None:intergenic 45.0%
GCATAACCAAGAACAAGCAG+GGG - Chr1:78344074-78344093 MsG0180004463.01.T01:exon 45.0%
GGGATGCTTGTGTTAAACAG+CGG + Chr1:78336586-78336605 None:intergenic 45.0%
GGTAAGGGGTAGACCATTAA+AGG - Chr1:78342459-78342478 MsG0180004463.01.T01:intron 45.0%
GGTGTCTGATAAGTATCCTG+TGG - Chr1:78341312-78341331 MsG0180004463.01.T01:intron 45.0%
GTAATGACACAGCAGATGAG+GGG - Chr1:78337741-78337760 MsG0180004463.01.T01:intron 45.0%
GTCCAAAAGCTTCTTCGGAA+AGG - Chr1:78343924-78343943 MsG0180004463.01.T01:intron 45.0%
GTCGTCTCATAGCTGTTGAT+TGG - Chr1:78339941-78339960 MsG0180004463.01.T01:intron 45.0%
GTCGTGGTCCACTTAAGATT+GGG + Chr1:78340422-78340441 None:intergenic 45.0%
TAACCAACCTGCCGAATTAC+AGG + Chr1:78343115-78343134 None:intergenic 45.0%
TAATGACACAGCAGATGAGG+GGG - Chr1:78337742-78337761 MsG0180004463.01.T01:intron 45.0%
TACAGATTCGTCTTTGGCAG+AGG + Chr1:78342002-78342021 None:intergenic 45.0%
TATGTTCACTCTGCGTGTTG+TGG - Chr1:78337058-78337077 MsG0180004463.01.T01:CDS 45.0%
TCAACTGCCAATACTGCTTC+TGG - Chr1:78342424-78342443 MsG0180004463.01.T01:intron 45.0%
TCCTGTGTGCAGTCTTTCAA+AGG - Chr1:78339752-78339771 MsG0180004463.01.T01:intron 45.0%
TCGTGGTCCACTTAAGATTG+GGG + Chr1:78340421-78340440 None:intergenic 45.0%
TGAACCGTTCTTCAGCTCAA+TGG + Chr1:78337245-78337264 None:intergenic 45.0%
TGAAGATGGCAGGAAAGGAA+AGG - Chr1:78343241-78343260 MsG0180004463.01.T01:intron 45.0%
TGAGCTGAAGAACGGTTCAT+TGG - Chr1:78337246-78337265 MsG0180004463.01.T01:intron 45.0%
TGAGGTCACTGTTATGGTGA+AGG + Chr1:78341256-78341275 None:intergenic 45.0%
TGATAGAGGTCTCCATTGGA+GGG - Chr1:78340528-78340547 MsG0180004463.01.T01:intron 45.0%
TGCACCCTTAACAGTTTCCT+TGG + Chr1:78342068-78342087 None:intergenic 45.0%
TGGTCTCGTGAATTCTGCTA+TGG - Chr1:78337997-78338016 MsG0180004463.01.T01:intron 45.0%
TGTCAAGTATATGGGACGGA+GGG + Chr1:78340575-78340594 None:intergenic 45.0%
TTAAGAAAACCAGTCCCTCG+TGG + Chr1:78342370-78342389 None:intergenic 45.0%
TTCAAGAAAAGCGACTCCAC+GGG + Chr1:78343288-78343307 None:intergenic 45.0%
TTCAGGACCAAAGGTTTCTG+TGG + Chr1:78343578-78343597 None:intergenic 45.0%
TTGATAGAGGTCTCCATTGG+AGG - Chr1:78340527-78340546 MsG0180004463.01.T01:intron 45.0%
TTTCTGCTGTTGCCATTGTG+AGG + Chr1:78343684-78343703 None:intergenic 45.0%
! AAGGGACGCATTTTCATCTG+CGG - Chr1:78339598-78339617 MsG0180004463.01.T01:intron 45.0%
! ACCTGTTAGACGCTGTTTCA+TGG - Chr1:78336272-78336291 MsG0180004463.01.T01:CDS 45.0%
! ATGCGTCTAGAGCCTTGAAA+GGG - Chr1:78339085-78339104 MsG0180004463.01.T01:intron 45.0%
! CAAGAAATCGGCTCATGACA+AGG - Chr1:78342498-78342517 MsG0180004463.01.T01:intron 45.0%
! CAATGTTGCAACAGAAGCAC+GGG + Chr1:78338697-78338716 None:intergenic 45.0%
! CTTTTGGATTTGCCTCCTTG+AGG + Chr1:78343851-78343870 None:intergenic 45.0%
! GAAGACGCAGTATTGGAAAG+AGG - Chr1:78344046-78344065 MsG0180004463.01.T01:CDS 45.0%
! GTCTCTTAGAGCATCCACAA+TGG + Chr1:78340904-78340923 None:intergenic 45.0%
! TATGCGTCTAGAGCCTTGAA+AGG - Chr1:78339084-78339103 MsG0180004463.01.T01:intron 45.0%
!! CCACATTGAGGGTACCTATT+AGG + Chr1:78340354-78340373 None:intergenic 45.0%
!! CTTGTGCTGTTTATGTGCTC+TGG - Chr1:78338349-78338368 MsG0180004463.01.T01:intron 45.0%
!! GAAGGTAAGAGCATCCACAT+TGG - Chr1:78340300-78340319 MsG0180004463.01.T01:intron 45.0%
!! GATAAAGACAGCGGATTGTC+TGG - Chr1:78337516-78337535 MsG0180004463.01.T01:intron 45.0%
!! GTAAGAGCATCCACATTGGT+AGG - Chr1:78340304-78340323 MsG0180004463.01.T01:intron 45.0%
!! TGAGGGTACCTATTAGGTAC+CGG + Chr1:78340348-78340367 None:intergenic 45.0%
!!! CTGGGATGGGTATTTTGGTA+AGG - Chr1:78342443-78342462 MsG0180004463.01.T01:intron 45.0%
!!! GGGATGGGTATTTTGGTAAG+GGG - Chr1:78342445-78342464 MsG0180004463.01.T01:intron 45.0%
!!! GGTTGTCCATTTTTGAAGCG+TGG - Chr1:78341333-78341352 MsG0180004463.01.T01:intron 45.0%
!!! TGCTTCTGGGATGGGTATTT+TGG - Chr1:78342438-78342457 MsG0180004463.01.T01:intron 45.0%
!! AAATTAAAAAAAATATTTCA+TGG + Chr1:78337822-78337841 None:intergenic 5.0%
!! TGTTTAATTATAAAATAAAA+AGG + Chr1:78338415-78338434 None:intergenic 5.0%
!!! TTAATTTTTTTTTAATGTTT+GGG - Chr1:78337835-78337854 MsG0180004463.01.T01:intron 5.0%
!!! TTTAATTTTTTTTTAATGTT+TGG - Chr1:78337834-78337853 MsG0180004463.01.T01:intron 5.0%
AATGACACAGCAGATGAGGG+GGG - Chr1:78337743-78337762 MsG0180004463.01.T01:intron 50.0%
AATGCGGGAGTTTACGCACA+TGG - Chr1:78343722-78343741 MsG0180004463.01.T01:intron 50.0%
ACCCATCCCAGAAGCAGTAT+TGG + Chr1:78342434-78342453 None:intergenic 50.0%
ACGTGGTGAGGTCACTGTTA+TGG + Chr1:78341115-78341134 None:intergenic 50.0%
ACTTTACCTCCCCACCAAGT+TGG + Chr1:78338757-78338776 None:intergenic 50.0%
AGGGAGCCAAGACTCAGAAA+TGG - Chr1:78339443-78339462 MsG0180004463.01.T01:intron 50.0%
ATCAGTGGCTGAAACCCCTT+CGG + Chr1:78342702-78342721 None:intergenic 50.0%
ATTCCACAGAAGTCCGACAC+AGG - Chr1:78339641-78339660 MsG0180004463.01.T01:intron 50.0%
ATTTCTGAGTCTTGGCTCCC+TGG + Chr1:78339444-78339463 None:intergenic 50.0%
CAACCGCAACCTTCTTCCTT+TGG + Chr1:78337573-78337592 None:intergenic 50.0%
CAAGAACAGCAGTATTCCCG+TGG - Chr1:78343269-78343288 MsG0180004463.01.T01:intron 50.0%
CAAGATGGCCAGAATCATGG+TGG - Chr1:78343962-78343981 MsG0180004463.01.T01:intron 50.0%
CAATGATGCTCCTGCTTCAG+AGG - Chr1:78339996-78340015 MsG0180004463.01.T01:intron 50.0%
CACCATGATTCTGGCCATCT+TGG + Chr1:78343964-78343983 None:intergenic 50.0%
CCAAGAACAAGCAGGGGAAA+AGG - Chr1:78344080-78344099 MsG0180004463.01.T01:exon 50.0%
CCGCAATCTTTACTTGGCGA+AGG - Chr1:78342555-78342574 MsG0180004463.01.T01:intron 50.0%
CGTTCTTCAGCTCAATGGCT+TGG + Chr1:78337240-78337259 None:intergenic 50.0%
CTCCACAATTGCCGATGTTC+AGG + Chr1:78343595-78343614 None:intergenic 50.0%
GAGATAGGAGGAGGAACTGT+TGG - Chr1:78338726-78338745 MsG0180004463.01.T01:intron 50.0%
GATAGAGGTCTCCATTGGAG+GGG - Chr1:78340529-78340548 MsG0180004463.01.T01:intron 50.0%
GATATCATGAGGACCGAGGA+GGG - Chr1:78336962-78336981 MsG0180004463.01.T01:intron 50.0%
GCATATCAGCTACCATAGCC+TGG + Chr1:78342607-78342626 None:intergenic 50.0%
GCGAGTCCACGCTTCAAAAA+TGG + Chr1:78341342-78341361 None:intergenic 50.0%
GGACATACTTGGTCACTTGG+TGG + Chr1:78342274-78342293 None:intergenic 50.0%
GGAGGGGTTGAGTACCTATT+AGG - Chr1:78340545-78340564 MsG0180004463.01.T01:intron 50.0%
GGTCGTGGTCCACTTAAGAT+TGG + Chr1:78340423-78340442 None:intergenic 50.0%
GTCCTGAACATCGGCAATTG+TGG - Chr1:78343590-78343609 MsG0180004463.01.T01:intron 50.0%
GTCGTCTATTGCGAGACAGA+GGG - Chr1:78340802-78340821 MsG0180004463.01.T01:intron 50.0%
GTGTCAAGTATATGGGACGG+AGG + Chr1:78340576-78340595 None:intergenic 50.0%
TAACAGTGACCTCACCACGT+CGG - Chr1:78341115-78341134 MsG0180004463.01.T01:intron 50.0%
TAGGTACTCAACCCCTCCAA+TGG + Chr1:78340543-78340562 None:intergenic 50.0%
TCAGGGTCTACACAACATCG+TGG - Chr1:78336375-78336394 MsG0180004463.01.T01:intron 50.0%
TCGAAGATCGAACCGGATCA+AGG - Chr1:78337324-78337343 MsG0180004463.01.T01:intron 50.0%
TCGCCAAGTAAAGATTGCGG+TGG + Chr1:78342555-78342574 None:intergenic 50.0%
TCTCTTCTTCATCATCGGCG+AGG - Chr1:78336014-78336033 MsG0180004463.01.T01:CDS 50.0%
TGATATCATGAGGACCGAGG+AGG - Chr1:78336961-78336980 MsG0180004463.01.T01:intron 50.0%
TGCATTATCAGCTGCTTCCG+CGG + Chr1:78342401-78342420 None:intergenic 50.0%
TGCGTAAACTCCCGCATTGT+CGG + Chr1:78343720-78343739 None:intergenic 50.0%
TTCATCTGCGGGGACTGTAT+GGG - Chr1:78339610-78339629 MsG0180004463.01.T01:intron 50.0%
TTCCACAGAAGTCCGACACA+GGG - Chr1:78339642-78339661 MsG0180004463.01.T01:intron 50.0%
TTGCCGATGTTCAGGACCAA+AGG + Chr1:78343587-78343606 None:intergenic 50.0%
TTGGGGTCTCTTAAGACTCG+GGG - Chr1:78340383-78340402 MsG0180004463.01.T01:intron 50.0%
TTTCATCTGCGGGGACTGTA+TGG - Chr1:78339609-78339628 MsG0180004463.01.T01:intron 50.0%
! AGGGACGCATTTTCATCTGC+GGG - Chr1:78339599-78339618 MsG0180004463.01.T01:intron 50.0%
! ATCGGCTCATGACAAGGAAC+AGG - Chr1:78342504-78342523 MsG0180004463.01.T01:intron 50.0%
! CCCTTTGAAAGACTGCACAC+AGG + Chr1:78339756-78339775 None:intergenic 50.0%
! CCTTTTCCCCTGCTTGTTCT+TGG + Chr1:78344083-78344102 None:intergenic 50.0%
! GATCTTCGATTTTCACGGGG+AGG + Chr1:78337313-78337332 None:intergenic 50.0%
! TGCCAATACTGCTTCTGGGA+TGG - Chr1:78342429-78342448 MsG0180004463.01.T01:intron 50.0%
! TTGGTCACTTGGTGGAGAAC+AGG + Chr1:78342266-78342285 None:intergenic 50.0%
!! ACACACAGTGCCGATTTCTC+TGG + Chr1:78338044-78338063 None:intergenic 50.0%
!! ACGGTTCATTGGTTGGTGAC+CGG - Chr1:78337257-78337276 MsG0180004463.01.T01:intron 50.0%
!! CTCTGAAGCAGGAGCATCAT+TGG + Chr1:78339998-78340017 None:intergenic 50.0%
!! GAGGGTACCTATTAGGTACC+GGG + Chr1:78340347-78340366 None:intergenic 50.0%
!! GCCAATACTGCTTCTGGGAT+GGG - Chr1:78342430-78342449 MsG0180004463.01.T01:intron 50.0%
!! TCTGGTGCCAAGTCTTTTGC+TGG + Chr1:78343785-78343804 None:intergenic 50.0%
!!! ACTTTTTGGCTGTTCCGACG+TGG + Chr1:78341132-78341151 None:intergenic 50.0%
AACTGTTGGGCACGCCAACT+TGG - Chr1:78338740-78338759 MsG0180004463.01.T01:intron 55.0%
AGCCTTCTTGCAGCAGACCT+GGG + Chr1:78338629-78338648 None:intergenic 55.0%
CACCGCCAAGCCAGAGAAAT+CGG - Chr1:78338031-78338050 MsG0180004463.01.T01:intron 55.0%
CGTGGACTCGCCTAAATCCA+GGG - Chr1:78341351-78341370 MsG0180004463.01.T01:intron 55.0%
CTACCATAGCCTGGAACACG+AGG + Chr1:78342598-78342617 None:intergenic 55.0%
CTATGATGCATGGACAGCCC+TGG + Chr1:78341371-78341390 None:intergenic 55.0%
GATGCTCCTGCTTCAGAGGA+AGG - Chr1:78340000-78340019 MsG0180004463.01.T01:intron 55.0%
GCATGGACAGCCCTGGATTT+AGG + Chr1:78341364-78341383 None:intergenic 55.0%
GGCTTGGCGGTGAACATCTT+CGG + Chr1:78338023-78338042 None:intergenic 55.0%
GGTCGTCTATTGCGAGACAG+AGG - Chr1:78340801-78340820 MsG0180004463.01.T01:intron 55.0%
GTACCTCGTGTTCCAGGCTA+TGG - Chr1:78342592-78342611 MsG0180004463.01.T01:intron 55.0%
TACCCTGTGTCGGACTTCTG+TGG + Chr1:78339647-78339666 None:intergenic 55.0%
TCCTCTGTACCTCGTGTTCC+AGG - Chr1:78342586-78342605 MsG0180004463.01.T01:intron 55.0%
TTCATCATCGGCGAGGCGAT+GGG - Chr1:78336021-78336040 MsG0180004463.01.T01:CDS 55.0%
TTCCCAGGTCTGCTGCAAGA+AGG - Chr1:78338624-78338643 MsG0180004463.01.T01:intron 55.0%
! CACGGTGGTAGAGTGCCAAA+TGG - Chr1:78343818-78343837 MsG0180004463.01.T01:CDS 55.0%
! GGGACGCATTTTCATCTGCG+GGG - Chr1:78339600-78339619 MsG0180004463.01.T01:intron 55.0%
! GGGGTCCCCTTTCTGTCTTT+TGG + Chr1:78343867-78343886 None:intergenic 55.0%
!! CAGTGCCGATTTCTCTGGCT+TGG + Chr1:78338039-78338058 None:intergenic 55.0%
!! GGACGGAGGGAGTACCTAAT+AGG + Chr1:78340562-78340581 None:intergenic 55.0%
!! TGCCGATTTCTCTGGCTTGG+CGG + Chr1:78338036-78338055 None:intergenic 55.0%
ACGGAACTCCAGCTGCCGAA+GGG - Chr1:78342684-78342703 MsG0180004463.01.T01:intron 60.0%
ACTCAATGCAGGCGTCCACG+AGG - Chr1:78342352-78342371 MsG0180004463.01.T01:intron 60.0%
ATCTGCGGGGACTGTATGGG+AGG - Chr1:78339613-78339632 MsG0180004463.01.T01:intron 60.0%
CAGCCTTCTTGCAGCAGACC+TGG + Chr1:78338630-78338649 None:intergenic 60.0%
CTCAATGCAGGCGTCCACGA+GGG - Chr1:78342353-78342372 MsG0180004463.01.T01:intron 60.0%
CTTCATCATCGGCGAGGCGA+TGG - Chr1:78336020-78336039 MsG0180004463.01.T01:CDS 60.0%
GCCTGGAACACGAGGTACAG+AGG + Chr1:78342590-78342609 None:intergenic 60.0%
GCGTGGACTCGCCTAAATCC+AGG - Chr1:78341350-78341369 MsG0180004463.01.T01:intron 60.0%
GTTGGGCACGCCAACTTGGT+GGG - Chr1:78338744-78338763 MsG0180004463.01.T01:intron 60.0%
TGTTGGGCACGCCAACTTGG+TGG - Chr1:78338743-78338762 MsG0180004463.01.T01:intron 60.0%
TTGGCTGTTCCGACGTGGTG+AGG + Chr1:78341127-78341146 None:intergenic 60.0%
! CGATTTTCACGGGGAGGACG+AGG + Chr1:78337307-78337326 None:intergenic 60.0%
! TTGGGCACGCCAACTTGGTG+GGG - Chr1:78338745-78338764 MsG0180004463.01.T01:intron 60.0%
CGGAACTCCAGCTGCCGAAG+GGG - Chr1:78342685-78342704 MsG0180004463.01.T01:intron 65.0%
GACACAGCAGATGAGGGGGG+TGG - Chr1:78337746-78337765 MsG0180004463.01.T01:intron 65.0%
GACGGAACTCCAGCTGCCGA+AGG - Chr1:78342683-78342702 MsG0180004463.01.T01:intron 65.0%
GCTGAAACCCCTTCGGCAGC+TGG + Chr1:78342695-78342714 None:intergenic 65.0%
! CAGCAGCGGGCTCCTCACAA+TGG - Chr1:78343669-78343688 MsG0180004463.01.T01:intron 65.0%
TGCAGGCGTCCACGAGGGAC+TGG - Chr1:78342358-78342377 MsG0180004463.01.T01:intron 70.0%
! GGCACGCCAACTTGGTGGGG+AGG - Chr1:78338748-78338767 MsG0180004463.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr1 gene 78335981 78344141 78335981 ID=MsG0180004463.01;Name=MsG0180004463.01
Chr1 mRNA 78335981 78344141 78335981 ID=MsG0180004463.01.T01;Parent=MsG0180004463.01;Name=MsG0180004463.01.T01;_AED=0.44;_eAED=0.48;_QI=58|0.5|0.53|1|1|1|15|0|615
Chr1 exon 78335981 78336368 78335981 ID=MsG0180004463.01.T01:exon:15150;Parent=MsG0180004463.01.T01
Chr1 exon 78336780 78336891 78336780 ID=MsG0180004463.01.T01:exon:15149;Parent=MsG0180004463.01.T01
Chr1 exon 78336992 78337164 78336992 ID=MsG0180004463.01.T01:exon:15148;Parent=MsG0180004463.01.T01
Chr1 exon 78337384 78337454 78337384 ID=MsG0180004463.01.T01:exon:15147;Parent=MsG0180004463.01.T01
Chr1 exon 78337546 78337759 78337546 ID=MsG0180004463.01.T01:exon:15146;Parent=MsG0180004463.01.T01
Chr1 exon 78337837 78337914 78337837 ID=MsG0180004463.01.T01:exon:15145;Parent=MsG0180004463.01.T01
Chr1 exon 78338146 78338311 78338146 ID=MsG0180004463.01.T01:exon:15144;Parent=MsG0180004463.01.T01
Chr1 exon 78340101 78340215 78340101 ID=MsG0180004463.01.T01:exon:15143;Parent=MsG0180004463.01.T01
Chr1 exon 78340306 78340348 78340306 ID=MsG0180004463.01.T01:exon:15142;Parent=MsG0180004463.01.T01
Chr1 exon 78340459 78340541 78340459 ID=MsG0180004463.01.T01:exon:15141;Parent=MsG0180004463.01.T01
Chr1 exon 78340627 78340677 78340627 ID=MsG0180004463.01.T01:exon:15140;Parent=MsG0180004463.01.T01
Chr1 exon 78341809 78341859 78341809 ID=MsG0180004463.01.T01:exon:15139;Parent=MsG0180004463.01.T01
Chr1 exon 78342777 78342906 78342777 ID=MsG0180004463.01.T01:exon:15138;Parent=MsG0180004463.01.T01
Chr1 exon 78343817 78343876 78343817 ID=MsG0180004463.01.T01:exon:15137;Parent=MsG0180004463.01.T01
Chr1 exon 78343971 78344141 78343971 ID=MsG0180004463.01.T01:exon:15136;Parent=MsG0180004463.01.T01
Chr1 five_prime_UTR 78344084 78344141 78344084 ID=MsG0180004463.01.T01:five_prime_utr;Parent=MsG0180004463.01.T01
Chr1 CDS 78343971 78344083 78343971 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78343817 78343876 78343817 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78342777 78342906 78342777 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78341809 78341859 78341809 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78340627 78340677 78340627 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78340459 78340541 78340459 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78340306 78340348 78340306 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78340101 78340215 78340101 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78338146 78338311 78338146 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78337837 78337914 78337837 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78337546 78337759 78337546 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78337384 78337454 78337384 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78336992 78337164 78336992 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78336780 78336891 78336780 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Chr1 CDS 78335981 78336368 78335981 ID=MsG0180004463.01.T01:cds;Parent=MsG0180004463.01.T01
Gene Sequence

>MsG0180004463.01.T01

ATGGGCAAGAAAAACAAAGCAATGAAGGAAAATAGCGACGACGGCACCGTTAAACAATGTCCGCCGTTAACACTCTTGTTTCTAATTTACCCTATTCCTTCACTAACTCTCAGCTTGAACAAACTTTCAGTGAAGTTGGACCTGTTAGACGCTGTTTCATGGTTACACAAAGGTGCTGTTGAGAAAGACGCTAACCAAGCCATTGAGCTGAAGAACGGTTCATTGGTTGGTGACCGGAAAATTGTAGTGAAGCACGCAATGCCTCGTCCTCCCCGTGAAAATCGAAGATCGAACCGGATCAAGTTCATATTTTCCCATTGTTTTGCACTTCGTGTTGAGCCATCTCATGTTAGTGGAGCCAAGACTCAGAAATGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAAAGAAAATGAAATAAGGGACGCATTTTCATCTGCGGGGACTGTATGGGAGGTATTCATTCCACAGAAGTCCGACACAGGGGTTTGCATTTGTAAATTCACCTGCAAGCAAGATGCTGAAAATGCGATTCGAAAACTCAATGGATTGAAGTTTGGGAGTCGTCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACCAATGATGCTCCTGCTTCAGAGGAAGGACAACAAAAGGTGACAGATGAAGATGGTAGTACTACTACTGAGGATGATCTTGAGAATACTGACAAAGAATCTGATCAAGGAGATGATAGTGATATTGATAGTGTTGTGGAGGAAGATTTCCTTCTGACGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAAATACCGAAGAAGTGAAGCAACGGTTTCTGCATTTGGTGAAGTAGAATATTTTGCTCCTGTTCTCCACCAAGTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACCGCGGAAGCAGCTGATAATGCAATTTCAACTGCCAATACTGCTTCTGGGATGGGTATTTTGGTAAGGGGTAGACCATTAAAGGTTTTAAAGGCTCTGGACAAGAAATCGGCTCATGACAAGGAACAGGAGAAAGAAAAAAATGAAGTTCAAGACCACCGCAATCTTTACTTGGCGAAGGAGGGACTTATTCTTGACGGAACTCCAGCTGCCGAAGGGGTTTCAGCCACTGATATGTCAAAACGCAAAAATTTGGAAAGGAAAAAGAAGATGAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCAAAGTCAATGACTGAAAAACAACTTAAGACGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAATACCTGTAATTCGGCAGGTTGATAAAGATTTTGAAGATGGCAGGAAAGGAAAGGCTACTCAAGAACAGCAGTATTCCCGTGGAGTCGCTTTTCTTGAATTTTCAGAGCATCAACATGCTCTTGTTGCTTTTCAAAAACGAAAATCTCAAGAGCATGACAAACCAGCAAAAGACTTGGCACCAGATTCAAATAGTGAACACGGTGGTAGAGTGCCAAATGGAAAATCTCCTCAAGGAGGCAAATCCAAAAGACAGAAAGGGGACCCCAAGAGTACAAATACCGAAGTGATCTCATCGAAAGAAAGTCCAAAAGCTTCTTCGGAAAGGAAGCTAAAAAATAACCAAGATGGCCAGAATCATGGTGGTAAATTACATGAAGGTAAAAATAGTTCCATTGACAGTAATAGGAAAATATCAGGTAAGAAAGAAGACGCAGTATTGGAAAGAGGAAGATGCATAACCAAGAACAAGCAGGGGAAAAGGTTTCTAGGAAAAGGCCAAAGAAGAACAAAGATTCAGTAG

Protein sequence

>MsG0180004463.01.T01

MGKKNKAMKENSDDGTVKQCPPLTLLFLIYPIPSLTLSLNKLSVKLDLLDAVSWLHKGAVEKDANQAIELKNGSLVGDRKIVVKHAMPRPPRENRRSNRIKFIFSHCFALRVEPSHVSGAKTQKWKLIVRNLPFKAKENEIRDAFSSAGTVWEVFIPQKSDTGVCICKFTCKQDAENAIRKLNGLKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDGSTTTEDDLENTDKESDQGDDSDIDSVVEEDFLLTMILTRKQTLQEKYRRSEATVSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADNAISTANTASGMGILVRGRPLKVLKALDKKSAHDKEQEKEKNEVQDHRNLYLAKEGLILDGTPAAEGVSATDMSKRKNLERKKKMKLQSPNFHVSKTRLVIYNLPKSMTEKQLKTLCIDAVISRATKQIPVIRQVDKDFEDGRKGKATQEQQYSRGVAFLEFSEHQHALVAFQKRKSQEHDKPAKDLAPDSNSEHGGRVPNGKSPQGGKSKRQKGDPKSTNTEVISSKESPKASSERKLKNNQDGQNHGGKLHEGKNSSIDSNRKISGKKEDAVLERGRCITKNKQGKRFLGKGQRRTKIQ*