AlfalfaGEDB | MsG0380015010.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015010.01

KEGG: K00799
GO: GO:0005515
PFAM: PF02798 PF13410

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015010.01.T01	GAY55913.1	57.68	319	105	3	1	297	17	327	1.17E-126	374

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015010.01.T01	P25317	68.156	179	57	0	1	179	18	196	1.00E-86	261

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015010.01.T01	A0A2H5PU97	57.680	319	105	3	1	297	17	327	5.58e-127	374

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047831.01	MsG0380015010.01	0.853585	2.168097e-61	4.708099e-58
MsG0080048036.01	MsG0380015010.01	0.850457	1.677691e-60	3.288301e-57
MsG0080048059.01	MsG0380015010.01	-0.802314	5.948518e-49	2.904939e-46
MsG0080048345.01	MsG0380015010.01	0.821032	5.009033e-53	4.029767e-50
MsG0080048347.01	MsG0380015010.01	0.840013	1.122426e-57	1.578107e-54
MsG0080048348.01	MsG0380015010.01	0.811251	7.688165e-51	4.735541e-48
MsG0080048349.01	MsG0380015010.01	0.818383	2.017682e-52	1.508140e-49
MsG0080048350.01	MsG0380015010.01	0.803165	3.970890e-49	1.981536e-46
MsG0080048352.01	MsG0380015010.01	0.839275	1.747040e-57	2.400466e-54
MsG0080048904.01	MsG0380015010.01	0.805492	1.300389e-49	6.889313e-47

Showing 1 to 10 of 299 entries

Previous1 2 3 4 5…30Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015010.01.T01	MTR_3g467430	93.855	179	11	0	1	179	22	200	1.29e-121	347
MsG0380015010.01.T01	MTR_3g467430	88.235	119	9	1	179	297	111	224	3.82e-67	209
MsG0380015010.01.T01	MTR_3g467420	88.827	179	20	0	1	179	22	200	1.13e-113	327
MsG0380015010.01.T01	MTR_3g467420	84.034	119	14	1	179	297	111	224	2.65e-64	202
MsG0380015010.01.T01	MTR_2g070150	65.363	179	62	0	1	179	17	195	4.10e-85	254
MsG0380015010.01.T01	MTR_2g070150	61.538	104	35	1	179	282	106	204	9.72e-38	133
MsG0380015010.01.T01	MTR_2g070140	64.804	179	63	0	1	179	1	179	1.22e-84	253
MsG0380015010.01.T01	MTR_2g070140	57.143	119	46	1	179	297	90	203	1.11e-42	145
MsG0380015010.01.T01	MTR_2g070180	64.804	179	63	0	1	179	17	195	5.48e-84	252
MsG0380015010.01.T01	MTR_2g070180	53.509	114	48	1	179	292	106	214	1.28e-35	128

Showing 1 to 10 of 69 entries

Previous1 2 3 4 5 6 7Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015010.01.T01	AT1G78370	63.687	179	65	0	1	179	17	195	6.00e-84	251
MsG0380015010.01.T01	AT1G78370	61.818	110	37	1	185	294	112	216	2.21e-40	140
MsG0380015010.01.T01	AT1G78380	64.246	179	64	0	1	179	17	195	3.36e-83	250
MsG0380015010.01.T01	AT1G78380	59.130	115	42	1	179	293	106	215	1.14e-39	138
MsG0380015010.01.T01	AT1G17180	67.039	179	59	0	1	179	17	195	3.36e-83	250
MsG0380015010.01.T01	AT1G17180	60.504	119	42	1	179	297	106	219	7.12e-40	139
MsG0380015010.01.T01	AT1G17170	66.480	179	59	1	1	179	17	194	4.15e-79	239
MsG0380015010.01.T01	AT1G17170	55.039	129	50	3	169	297	98	218	8.21e-37	131
MsG0380015010.01.T01	AT1G78340	57.542	179	76	0	1	179	17	195	1.10e-74	228
MsG0380015010.01.T01	AT1G78340	51.852	108	47	1	185	292	112	214	4.06e-30	113

Showing 1 to 10 of 45 entries

Previous1 2 3 4 5Next

Find 62 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGCATTGGAAGAGAA+GGG	0.534970	3:+63887138	MsG0380015010.01.T01:CDS
AAACCGGGTTCATCTCTAAA+AGG	0.359573	3:-63887209	None:intergenic
AACGATCACAAGCCAAGTTT+TGG	0.283238	3:+63887352	MsG0380015010.01.T01:CDS
AAGACTCTGGAAGGTGAGCT+TGG	0.453965	3:+63890193	MsG0380015010.01.T01:CDS
AAGACTTTAGAAGGTGAGCT+TGG	0.438837	3:+63888981	MsG0380015010.01.T01:CDS
AAGGAAGCTATGGAAAGGAA+AGG	0.650275	3:+63888914	MsG0380015010.01.T01:CDS
AAGGAAGTTATGGACAGGAA+AGG	0.589284	3:+63890126	MsG0380015010.01.T01:CDS
AAGGTTGAAGAACAAGAGGA+AGG	0.559445	3:+63888933	MsG0380015010.01.T01:CDS
AAGTCATCTCCACCAAAATA+TGG	0.345848	3:-63890223	None:intergenic
AAGTCCTCTCCATCAAAATA+TGG	0.350775	3:-63889011	None:intergenic

Showing 1 to 10 of 62 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAATTGCATTGGAAGAGAA+GGG	+	Chr3:63887138-63887157	MsG0380015010.01.T01:CDS	30.0%
AGATTTCCGTAGTTTAGATT+GGG	-	Chr3:63887515-63887534	None:intergenic	30.0%
ATGCAATATAAACAGAAGCA+TGG	+	Chr3:63890439-63890458	MsG0380015010.01.T01:CDS	30.0%
CAGCTATATTTGCAAAATAC+TGG	+	Chr3:63887872-63887891	MsG0380015010.01.T01:intron	30.0%
CATTATGGATAGAATATAGC+GGG	-	Chr3:63888034-63888053	None:intergenic	30.0%
CTTTCATGTAATAGCCAATT+GGG	-	Chr3:63888759-63888778	None:intergenic	30.0%
GATACTTCACACTAATAGTA+AGG	-	Chr3:63889345-63889364	None:intergenic	30.0%
GATTAGTAAGACAAAATCAG+AGG	-	Chr3:63889367-63889386	None:intergenic	30.0%
GCTATATTTGCAAAATACTG+GGG	+	Chr3:63887874-63887893	MsG0380015010.01.T01:intron	30.0%
GGAGATTAGTAAGACAAAAT+CGG	-	Chr3:63887614-63887633	None:intergenic	30.0%

Showing 1 to 10 of 204 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	63887129	63890471	63887129	ID=MsG0380015010.01;Name=MsG0380015010.01
Chr3	mRNA	63887129	63890471	63887129	ID=MsG0380015010.01.T01;Parent=MsG0380015010.01;Name=MsG0380015010.01.T01;_AED=0.46;_eAED=0.47;_QI=0\|0\|0\|1\|1\|1\|3\|0\|297
Chr3	exon	63887129	63887395	63887129	ID=MsG0380015010.01.T01:exon:29787;Parent=MsG0380015010.01.T01
Chr3	exon	63888900	63889166	63888900	ID=MsG0380015010.01.T01:exon:29788;Parent=MsG0380015010.01.T01
Chr3	exon	63890112	63890471	63890112	ID=MsG0380015010.01.T01:exon:29789;Parent=MsG0380015010.01.T01
Chr3	CDS	63887129	63887395	63887129	ID=MsG0380015010.01.T01:cds;Parent=MsG0380015010.01.T01
Chr3	CDS	63888900	63889166	63888900	ID=MsG0380015010.01.T01:cds;Parent=MsG0380015010.01.T01
Chr3	CDS	63890112	63890471	63890112	ID=MsG0380015010.01.T01:cds;Parent=MsG0380015010.01.T01

Gene Sequence

>MsG0380015010.01.T01

ATGAGAGTGAAAATTGCATTGGAAGAGAAGGGAGTCTCATATGAGTGTAAACAAGAAGATTTTCAAAATAAGAGCTCTCTCCTTTTAGAGATGAACCCGGTTTACAAAAAGATCCCGGTTTTGATTCATAATGGAAAACCCATATGTGAATCACTTAATATAGTTGAGTACATTGATGAAGCTTGGAATCACAAACCTTCTCTTTTGCCCTCTGACCCTTACAAACGATCACAAGCCAAGTTTTGGGGAGATTACATTGACAAACATGTATACAGCATTCGAAGGAAGCTATGGAAAGGAAAGGTTGAAGAACAAGAGGAAGGTAAAAAGAAGTTTATAGAAGGCTTGAAGACTTTAGAAGGTGAGCTTGGAGACAAGCCATATTTTGATGGAGAGGACTTTGGGTATGTTGATTTGGCTCTTATACCCTTCACTAGTTGGTTTTACACTTACGAGATATATGGGAAACTAAGCATTGAGAAAGAGTGTCCTAAGCTTGTAGCTTGGGCCAAAAGGTGTATGGAAAAAGAGAGTGTATACAGCCTTCGAAGGAAGTTATGGACAGGAAAGGGTGAAGAACAAGAAGAAACTAAAAAGAAGTTTATAGAAGGCTTGAAGACTCTGGAAGGTGAGCTTGGAGACAAGCCATATTTTGGTGGAGATGACTTTGGGTATGTTGATGTGGCTCTTATACCCTTCACTAGTTGGTTTTACACTTACGAGATATATGGGAAACTAGATTTCGGGAAACTAAGCATTGAGAAAGAGTGTCCTAAGCTTGTAGCTTGGCCCAAAAGGTGTATGGAAAAGGAGAGTGTGGCCAAGTCACTTCCTCACCCTCACAAAATCTTTGGTTTTGCAATGCAATATAAACAGAAGCATGGACTTGAATAG

Protein sequence

>MsG0380015010.01.T01

MRVKIALEEKGVSYECKQEDFQNKSSLLLEMNPVYKKIPVLIHNGKPICESLNIVEYIDEAWNHKPSLLPSDPYKRSQAKFWGDYIDKHVYSIRRKLWKGKVEEQEEGKKKFIEGLKTLEGELGDKPYFDGEDFGYVDLALIPFTSWFYTYEIYGKLSIEKECPKLVAWAKRCMEKESVYSLRRKLWTGKGEEQEETKKKFIEGLKTLEGELGDKPYFGGDDFGYVDVALIPFTSWFYTYEIYGKLDFGKLSIEKECPKLVAWPKRCMEKESVAKSLPHPHKIFGFAMQYKQKHGLE*