Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048904.01.T01 | XP_003629728.1 | 85.65 | 446 | 31 | 6 | 1 | 432 | 1 | 427 | 0 | 747 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048904.01.T01 | G7LIM9 | 85.650 | 446 | 31 | 6 | 1 | 432 | 1 | 427 | 0.0 | 747 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048904.01 | MsG0180004266.01 | 0.808463 | 3.059997e-50 | 1.750807e-47 |
| MsG0080048904.01 | MsG0180004777.01 | 0.839597 | 1.440884e-57 | 1.999487e-54 |
| MsG0080048904.01 | MsG0180004941.01 | 0.825786 | 3.875927e-54 | 3.568253e-51 |
| MsG0080048904.01 | MsG0280006883.01 | 0.801895 | 7.256312e-49 | 3.505793e-46 |
| MsG0080048904.01 | MsG0280008405.01 | 0.808248 | 3.399710e-50 | 1.934307e-47 |
| MsG0080048904.01 | MsG0280011165.01 | 0.834173 | 3.493323e-56 | 4.112207e-53 |
| MsG0080048904.01 | MsG0280011193.01 | 0.826116 | 3.235894e-54 | 3.006985e-51 |
| MsG0080048904.01 | MsG0280011203.01 | 0.823981 | 1.033556e-53 | 9.036820e-51 |
| MsG0080048904.01 | MsG0380015009.01 | 0.833421 | 5.383790e-56 | 6.197275e-53 |
| MsG0080048904.01 | MsG0380015010.01 | 0.805492 | 1.300389e-49 | 6.889313e-47 |
| MsG0080048904.01 | MsG0380016801.01 | 0.820762 | 5.779298e-53 | 4.614134e-50 |
| MsG0080048904.01 | MsG0380017550.01 | 0.813670 | 2.275928e-51 | 1.495671e-48 |
| MsG0080048904.01 | MsG0380017579.01 | 0.812132 | 4.944778e-51 | 3.118098e-48 |
| MsG0080048904.01 | MsG0480019295.01 | 0.803346 | 3.642606e-49 | 1.826091e-46 |
| MsG0080048904.01 | MsG0480020411.01 | 0.836278 | 1.027595e-56 | 1.288973e-53 |
| MsG0080048904.01 | MsG0580025440.01 | 0.834968 | 2.204586e-56 | 2.658313e-53 |
| MsG0080048904.01 | MsG0580026095.01 | 0.829861 | 4.061072e-55 | 4.208714e-52 |
| MsG0080048904.01 | MsG0580028999.01 | 0.812691 | 3.732825e-51 | 2.389310e-48 |
| MsG0080048904.01 | MsG0680031240.01 | 0.814054 | 1.873110e-51 | 1.243782e-48 |
| MsG0080048904.01 | MsG0780038923.01 | 0.805226 | 1.478693e-49 | 7.780448e-47 |
| MsG0080048904.01 | MsG0780041663.01 | 0.815318 | 9.829098e-52 | 6.754363e-49 |
| MsG0080048904.01 | MsG0880042694.01 | 0.824439 | 8.066038e-54 | 7.144552e-51 |
| MsG0080048904.01 | MsG0880045458.01 | 0.817948 | 2.529742e-52 | 1.868192e-49 |
| MsG0080048904.01 | MsG0880045818.01 | 0.834014 | 3.828804e-56 | 4.486118e-53 |
| MsG0080048904.01 | MsG0880047211.01 | 0.829973 | 3.813571e-55 | 3.964320e-52 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048904.01.T01 | MTR_8g085870 | 85.650 | 446 | 31 | 6 | 1 | 432 | 1 | 427 | 0.0 | 747 |
| MsG0080048904.01.T01 | MTR_4g113730 | 45.455 | 253 | 105 | 4 | 1 | 220 | 1 | 253 | 8.47e-63 | 207 |
| MsG0080048904.01.T01 | MTR_7g059110 | 42.180 | 211 | 91 | 3 | 41 | 220 | 19 | 229 | 9.56e-49 | 170 |
| MsG0080048904.01.T01 | MTR_3g073240 | 43.367 | 196 | 103 | 3 | 34 | 229 | 36 | 223 | 5.57e-47 | 164 |
| MsG0080048904.01.T01 | MTR_4g094420 | 44.324 | 185 | 88 | 3 | 41 | 220 | 46 | 220 | 4.58e-46 | 164 |
| MsG0080048904.01.T01 | MTR_1g009790 | 41.053 | 190 | 92 | 4 | 43 | 229 | 23 | 195 | 8.30e-44 | 155 |
| MsG0080048904.01.T01 | MTR_1g009790 | 41.053 | 190 | 92 | 4 | 43 | 229 | 23 | 195 | 2.39e-43 | 155 |
| MsG0080048904.01.T01 | MTR_7g059110 | 44.037 | 109 | 61 | 0 | 112 | 220 | 158 | 266 | 3.26e-25 | 107 |
| MsG0080048904.01.T01 | MTR_7g059110 | 68.627 | 51 | 16 | 0 | 41 | 91 | 19 | 69 | 8.35e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048904.01.T01 | AT1G68140 | 43.204 | 206 | 90 | 4 | 19 | 220 | 22 | 204 | 2.02e-50 | 173 |
| MsG0080048904.01.T01 | AT1G68140 | 43.204 | 206 | 90 | 4 | 19 | 220 | 22 | 204 | 2.19e-50 | 174 |
| MsG0080048904.01.T01 | AT1G68140 | 43.204 | 206 | 90 | 4 | 19 | 220 | 22 | 204 | 2.19e-50 | 174 |
| MsG0080048904.01.T01 | AT1G68140 | 43.204 | 206 | 90 | 4 | 19 | 220 | 22 | 204 | 2.19e-50 | 174 |
| MsG0080048904.01.T01 | AT3G24740 | 41.346 | 208 | 92 | 3 | 41 | 220 | 19 | 224 | 3.37e-47 | 166 |
| MsG0080048904.01.T01 | AT3G24740 | 41.346 | 208 | 92 | 3 | 41 | 220 | 19 | 224 | 3.37e-47 | 166 |
| MsG0080048904.01.T01 | AT3G24740 | 41.346 | 208 | 92 | 3 | 41 | 220 | 19 | 224 | 3.37e-47 | 166 |
| MsG0080048904.01.T01 | AT3G24740 | 41.346 | 208 | 92 | 3 | 41 | 220 | 19 | 224 | 3.37e-47 | 166 |
| MsG0080048904.01.T01 | AT3G24740 | 41.346 | 208 | 92 | 3 | 41 | 220 | 19 | 224 | 3.37e-47 | 166 |
| MsG0080048904.01.T01 | AT3G24740 | 41.346 | 208 | 92 | 3 | 41 | 220 | 19 | 224 | 3.37e-47 | 166 |
| MsG0080048904.01.T01 | AT4G08460 | 36.967 | 211 | 103 | 2 | 19 | 229 | 20 | 200 | 1.05e-44 | 157 |
| MsG0080048904.01.T01 | AT4G08460 | 36.967 | 211 | 103 | 2 | 19 | 229 | 20 | 200 | 1.05e-44 | 157 |
| MsG0080048904.01.T01 | AT4G08460 | 36.967 | 211 | 103 | 2 | 19 | 229 | 20 | 200 | 1.05e-44 | 157 |
| MsG0080048904.01.T01 | AT4G08460 | 36.967 | 211 | 103 | 2 | 19 | 229 | 20 | 200 | 1.05e-44 | 157 |
| MsG0080048904.01.T01 | AT4G31410 | 42.246 | 187 | 88 | 2 | 43 | 229 | 29 | 195 | 5.55e-44 | 156 |
| MsG0080048904.01.T01 | AT4G31410 | 42.246 | 187 | 88 | 2 | 43 | 229 | 29 | 195 | 5.55e-44 | 156 |
| MsG0080048904.01.T01 | AT4G31410 | 42.246 | 187 | 88 | 2 | 43 | 229 | 29 | 195 | 5.55e-44 | 156 |
| MsG0080048904.01.T01 | AT1G77770 | 39.683 | 189 | 82 | 1 | 41 | 229 | 24 | 180 | 6.66e-37 | 136 |
| MsG0080048904.01.T01 | AT1G77770 | 39.683 | 189 | 82 | 1 | 41 | 229 | 24 | 180 | 6.77e-37 | 136 |
| MsG0080048904.01.T01 | AT1G77770 | 39.683 | 189 | 82 | 1 | 41 | 229 | 24 | 180 | 6.77e-37 | 136 |
| MsG0080048904.01.T01 | AT1G80220 | 37.981 | 208 | 95 | 4 | 19 | 225 | 19 | 193 | 1.13e-36 | 135 |
| MsG0080048904.01.T01 | AT1G15430 | 37.430 | 179 | 80 | 1 | 38 | 216 | 43 | 189 | 5.55e-36 | 133 |
| MsG0080048904.01.T01 | AT1G15430 | 37.430 | 179 | 80 | 1 | 38 | 216 | 43 | 189 | 5.55e-36 | 133 |
| MsG0080048904.01.T01 | AT3G25910 | 56.818 | 88 | 38 | 0 | 133 | 220 | 173 | 260 | 2.98e-27 | 112 |
| MsG0080048904.01.T01 | AT3G25910 | 55.682 | 88 | 34 | 3 | 1 | 88 | 1 | 83 | 4.42e-22 | 97.8 |
| MsG0080048904.01.T01 | AT2G26050 | 35.673 | 171 | 69 | 5 | 68 | 236 | 38 | 169 | 1.09e-23 | 99.0 |
Find 125 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACCTGCCTAGACCTAATTT+TGG | 0.218036 | contig527end:-17544 | MsG0080048904.01.T01:CDS |
| CTGTCATGTGATGGCATTCT+AGG | 0.252643 | contig527end:+16671 | None:intergenic |
| TTCTGAGACGTGTGAGTTCC+AGG | 0.270482 | contig527end:-17134 | MsG0080048904.01.T01:CDS |
| GATCGCCCTCTTCTAACTTT+TGG | 0.272975 | contig527end:+17622 | None:intergenic |
| AGCTTATCTGCCCTCTTTGC+CGG | 0.288827 | contig527end:-17228 | MsG0080048904.01.T01:CDS |
| TATGATTTCTCTGATTAGTA+TGG | 0.296233 | contig527end:+16594 | None:intergenic |
| CTCCATGTCGCCTGAGGCTT+TGG | 0.298490 | contig527end:-16939 | MsG0080048904.01.T01:CDS |
| TCATCAGCCGATCCAAAATT+AGG | 0.307268 | contig527end:+17532 | None:intergenic |
| TCGTCCTGTACTGGCATTCT+AGG | 0.308700 | contig527end:+16848 | None:intergenic |
| CTTTGCCGGGGAGGAATATA+TGG | 0.311985 | contig527end:-17214 | MsG0080048904.01.T01:CDS |
| GACCAATTCTGTAAGTTGTT+TGG | 0.314018 | contig527end:-17370 | MsG0080048904.01.T01:CDS |
| CCACATTGGGAGGGGTTCCC+AGG | 0.321346 | contig527end:+17268 | None:intergenic |
| CGTGAAATTTACTCTGTTGA+AGG | 0.340333 | contig527end:-16905 | MsG0080048904.01.T01:CDS |
| AACCAAACAACTTACAGAAT+TGG | 0.341143 | contig527end:+17368 | None:intergenic |
| TCTTCGTCTAGAAGGATTCC+TGG | 0.365511 | contig527end:-16374 | MsG0080048904.01.T01:CDS |
| GCAACAATTCTTCGTCTAGA+AGG | 0.368682 | contig527end:-16382 | MsG0080048904.01.T01:CDS |
| TGAGGAATTTCCATGCAAAT+AGG | 0.372859 | contig527end:+17481 | None:intergenic |
| GGGAGGAATATATGGATATA+TGG | 0.377337 | contig527end:-17206 | MsG0080048904.01.T01:CDS |
| TTGCAGCTTGCTCCCACATT+GGG | 0.386248 | contig527end:+17255 | None:intergenic |
| GCTTATCTGCCCTCTTTGCC+GGG | 0.394644 | contig527end:-17227 | MsG0080048904.01.T01:CDS |
| ACATGTGCAATACCAGTTAC+AGG | 0.404371 | contig527end:-17408 | MsG0080048904.01.T01:CDS |
| GATCAAACATTTCGCCTTCA+AGG | 0.419238 | contig527end:-16517 | MsG0080048904.01.T01:CDS |
| ACAGTTGGAGTGCCTGTAAC+TGG | 0.422118 | contig527end:+17396 | None:intergenic |
| GTTGCAGCTTGCTCCCACAT+TGG | 0.424476 | contig527end:+17254 | None:intergenic |
| GCTTGCTCCCACATTGGGAG+GGG | 0.424566 | contig527end:+17260 | None:intergenic |
| AATACACCCAATGCCGTTGC+TGG | 0.425129 | contig527end:+16794 | None:intergenic |
| CAAGAACAGTCTCTCATGAT+AGG | 0.427443 | contig527end:-17306 | MsG0080048904.01.T01:CDS |
| CTGTTGAAGGCAACACTGAC+TGG | 0.428366 | contig527end:-16892 | MsG0080048904.01.T01:CDS |
| GTTGAAGATGTTCTGACCCT+GGG | 0.432531 | contig527end:+16449 | None:intergenic |
| CAGCTTGCTCCCACATTGGG+AGG | 0.432690 | contig527end:+17258 | None:intergenic |
| CAAAGAGGGCAGATAAGCTT+TGG | 0.436235 | contig527end:+17232 | None:intergenic |
| CACATGCCAGCAACGGCATT+GGG | 0.446199 | contig527end:-16800 | MsG0080048904.01.T01:CDS |
| TAATCTCTCATCAGCAATGC+TGG | 0.447552 | contig527end:-17344 | MsG0080048904.01.T01:CDS |
| TAAGTTCTGGATATGTGCCC+TGG | 0.452432 | contig527end:+17116 | None:intergenic |
| CTAGCATGCTTCCTAAGTTC+TGG | 0.453642 | contig527end:+17103 | None:intergenic |
| AGGAAAGCTCAGTCAGAGCC+TGG | 0.456396 | contig527end:-17286 | MsG0080048904.01.T01:CDS |
| CATTTGCGTTGGCGCAATCA+AGG | 0.461043 | contig527end:-16347 | MsG0080048904.01.T01:CDS |
| AGCTTGCTCCCACATTGGGA+GGG | 0.461937 | contig527end:+17259 | None:intergenic |
| CGGCTGATGAAATGAAAGAA+TGG | 0.463244 | contig527end:-17519 | MsG0080048904.01.T01:CDS |
| TTCAGAAGAACAGTGTTATG+AGG | 0.469509 | contig527end:+17463 | None:intergenic |
| TGTTGAAGATGTTCTGACCC+TGG | 0.476149 | contig527end:+16448 | None:intergenic |
| TGACTGTGAGGCATCCTTGA+AGG | 0.477107 | contig527end:+16503 | None:intergenic |
| AATGTTTGATCTCCTCCATC+TGG | 0.477364 | contig527end:+16529 | None:intergenic |
| TCAGACCATTCGTCCTGTAC+TGG | 0.478756 | contig527end:+16839 | None:intergenic |
| ATCCGTCACGTCAGTATGAC+TGG | 0.478839 | contig527end:-17045 | MsG0080048904.01.T01:CDS |
| TTGCTCCGGGGATTAGTATG+AGG | 0.480173 | contig527end:+16401 | None:intergenic |
| ACTTAGGAAGCATGCTAGGC+TGG | 0.484512 | contig527end:-17098 | MsG0080048904.01.T01:CDS |
| TGAAAGAATGGGATGATACT+AGG | 0.484698 | contig527end:-17507 | MsG0080048904.01.T01:CDS |
| AGACGAAGAATTGTTGCTCC+GGG | 0.485667 | contig527end:+16388 | None:intergenic |
| ATCTCCTCCATCTGGCCATA+CGG | 0.487420 | contig527end:+16537 | None:intergenic |
| CACGTCAGTATGACTGGCTT+AGG | 0.489771 | contig527end:-17039 | MsG0080048904.01.T01:CDS |
| GAAATGTTCTTCTTATGAGA+AGG | 0.497789 | contig527end:-17443 | MsG0080048904.01.T01:CDS |
| CTGTTGAAGAGGACACTGAC+TGG | 0.499351 | contig527end:-16724 | MsG0080048904.01.T01:CDS |
| ATCCACTGCAATCTATAGAC+GGG | 0.499760 | contig527end:+17599 | None:intergenic |
| TAGACGAAGAATTGTTGCTC+CGG | 0.501598 | contig527end:+16387 | None:intergenic |
| ATCAATGCAAGTTCTGATGC+AGG | 0.502570 | contig527end:-16977 | MsG0080048904.01.T01:CDS |
| TGTTGAGAATTATTATAGAG+AGG | 0.506512 | contig527end:-16477 | MsG0080048904.01.T01:CDS |
| TAACTGGTATTGCACATGTA+AGG | 0.507897 | contig527end:+17412 | None:intergenic |
| AATCAGAGAAATCATAGAGC+TGG | 0.517760 | contig527end:-16587 | MsG0080048904.01.T01:CDS |
| CGCCAACGCAAATGACTACC+AGG | 0.519090 | contig527end:+16356 | None:intergenic |
| GTCAGTGTCCTCTTCAACAG+AGG | 0.523359 | contig527end:+16727 | None:intergenic |
| CAGTTCATATACCTTCGAGC+AGG | 0.523725 | contig527end:+17175 | None:intergenic |
| AAATGTTCTTCTTATGAGAA+GGG | 0.527142 | contig527end:-17442 | MsG0080048904.01.T01:CDS |
| TGACTGGCTTAGGATGGAAC+AGG | 0.527505 | contig527end:-17029 | MsG0080048904.01.T01:CDS |
| GACAAATCCCTCTGTTGAAG+AGG | 0.528060 | contig527end:-16735 | MsG0080048904.01.T01:CDS |
| GGCTGATGAAATGAAAGAAT+GGG | 0.532713 | contig527end:-17518 | MsG0080048904.01.T01:CDS |
| CAGAACTTAGGAAGCATGCT+AGG | 0.534979 | contig527end:-17102 | MsG0080048904.01.T01:CDS |
| ATCCAAAATTAGGTCTAGGC+AGG | 0.539299 | contig527end:+17542 | None:intergenic |
| AGGGCACATATCCAGAACTT+AGG | 0.539483 | contig527end:-17114 | MsG0080048904.01.T01:CDS |
| GCCGATCCAAAATTAGGTCT+AGG | 0.539538 | contig527end:+17538 | None:intergenic |
| GACCAAAGCCTCAGGCGACA+TGG | 0.546964 | contig527end:+16937 | None:intergenic |
| AAGACAAGGACCAAAGCCTC+AGG | 0.548439 | contig527end:+16929 | None:intergenic |
| ATATTCCTCCCCGGCAAAGA+GGG | 0.551581 | contig527end:+17218 | None:intergenic |
| ACAGAATTGGTCAAGACAGT+TGG | 0.553443 | contig527end:+17381 | None:intergenic |
| TATATAGTGCCGCTCATGGT+AGG | 0.554276 | contig527end:+16306 | None:intergenic |
| TACTAGGTGTCCTATTTGCA+TGG | 0.556087 | contig527end:-17491 | MsG0080048904.01.T01:CDS |
| ACTTCTGTTGGTCGAACAGA+AGG | 0.556174 | contig527end:+17070 | None:intergenic |
| TCAGATCTTCTGTCATGTGA+TGG | 0.556270 | contig527end:+16662 | None:intergenic |
| TGCGTTGGCGCAATCAAGGA+TGG | 0.556290 | contig527end:-16343 | MsG0080048904.01.T01:CDS |
| ATCTGCCCTCTTTGCCGGGG+AGG | 0.556924 | contig527end:-17223 | MsG0080048904.01.T01:CDS |
| CATCAAACCGTATGGCCAGA+TGG | 0.560005 | contig527end:-16544 | MsG0080048904.01.T01:CDS |
| ATTATAGAGAGGTGATCCCC+AGG | 0.561387 | contig527end:-16466 | MsG0080048904.01.T01:CDS |
| AAGACCTAGAATGCCAGTAC+AGG | 0.568320 | contig527end:-16852 | MsG0080048904.01.T01:CDS |
| TTCCTGGTAGTCATTTGCGT+TGG | 0.569500 | contig527end:-16358 | MsG0080048904.01.T01:CDS |
| TCTGAGACGTGTGAGTTCCA+GGG | 0.570045 | contig527end:-17133 | MsG0080048904.01.T01:CDS |
| CTCAATACACATGCCAGCAA+CGG | 0.571505 | contig527end:-16807 | MsG0080048904.01.T01:CDS |
| GATCCACTGCAATCTATAGA+CGG | 0.572827 | contig527end:+17598 | None:intergenic |
| ACACATGCCAGCAACGGCAT+TGG | 0.573673 | contig527end:-16801 | MsG0080048904.01.T01:CDS |
| AATATATGGATATATGGTAT+CGG | 0.574652 | contig527end:-17200 | MsG0080048904.01.T01:CDS |
| TGAGAGACTGTTCTTGTGAG+AGG | 0.578777 | contig527end:+17313 | None:intergenic |
| CTGGGAACCCCTCCCAATGT+GGG | 0.579374 | contig527end:-17267 | MsG0080048904.01.T01:CDS |
| GAAGATCTGAAACTATGCAC+AGG | 0.579647 | contig527end:-16649 | MsG0080048904.01.T01:CDS |
| GCTTAGGATGGAACAGGAGA+GGG | 0.582897 | contig527end:-17023 | MsG0080048904.01.T01:CDS |
| TCAGTATGACTGGCTTAGGA+TGG | 0.586046 | contig527end:-17035 | MsG0080048904.01.T01:CDS |
| TATATTCCTCCCCGGCAAAG+AGG | 0.588855 | contig527end:+17217 | None:intergenic |
| CCTGGGAACCCCTCCCAATG+TGG | 0.594503 | contig527end:-17268 | MsG0080048904.01.T01:CDS |
| TCTGTTATCATCAAACCGTA+TGG | 0.599538 | contig527end:-16552 | MsG0080048904.01.T01:CDS |
| AGTAAATTTCACGCAAGACA+AGG | 0.602544 | contig527end:+16915 | None:intergenic |
| AGCCAGTCATACTGACGTGA+CGG | 0.602653 | contig527end:+17043 | None:intergenic |
| AAGTTCCTCATACTAATCCC+CGG | 0.610437 | contig527end:-16406 | MsG0080048904.01.T01:CDS |
| GGAAAGCTCAGTCAGAGCCT+GGG | 0.610751 | contig527end:-17285 | MsG0080048904.01.T01:CDS |
| TATATCCATATATTCCTCCC+CGG | 0.613171 | contig527end:+17209 | None:intergenic |
| GAATGCCAGTACAGGACGAA+TGG | 0.613508 | contig527end:-16844 | MsG0080048904.01.T01:CDS |
| AAAATGCCAAAAGTTAGAAG+AGG | 0.615473 | contig527end:-17628 | MsG0080048904.01.T01:CDS |
| TCAGTGTCCTCTTCAACAGA+GGG | 0.619430 | contig527end:+16728 | None:intergenic |
| CTTATCTGCCCTCTTTGCCG+GGG | 0.619909 | contig527end:-17226 | MsG0080048904.01.T01:CDS |
| AAATGCCAAAAGTTAGAAGA+GGG | 0.621615 | contig527end:-17627 | MsG0080048904.01.T01:CDS |
| GGCTTAGGATGGAACAGGAG+AGG | 0.624851 | contig527end:-17024 | MsG0080048904.01.T01:CDS |
| TGGTATTGCACATGTAAGGT+CGG | 0.627971 | contig527end:+17416 | None:intergenic |
| TATTGTCTGAAACAATACAC+AGG | 0.629983 | contig527end:-16775 | MsG0080048904.01.T01:CDS |
| CGTGACGGATCTACTTCTGT+TGG | 0.634856 | contig527end:+17058 | None:intergenic |
| AGAAGACTCCATGTCGCCTG+AGG | 0.636611 | contig527end:-16945 | MsG0080048904.01.T01:CDS |
| TCCCCGTCTATAGATTGCAG+TGG | 0.644333 | contig527end:-17601 | MsG0080048904.01.T01:CDS |
| TTCTCAACAATCTGACTGTG+AGG | 0.645033 | contig527end:+16491 | None:intergenic |
| TGGTATCGGAACCTGCTCGA+AGG | 0.647070 | contig527end:-17186 | MsG0080048904.01.T01:CDS |
| TTGAAGATGTTCTGACCCTG+GGG | 0.655818 | contig527end:+16450 | None:intergenic |
| TTATAGAGAGGTGATCCCCA+GGG | 0.655993 | contig527end:-16465 | MsG0080048904.01.T01:CDS |
| GACGAAGAATTGTTGCTCCG+GGG | 0.676645 | contig527end:+16389 | None:intergenic |
| CAAACCGTATGGCCAGATGG+AGG | 0.687172 | contig527end:-16541 | MsG0080048904.01.T01:CDS |
| TGAGGAACTTGTGAAACTCG+AGG | 0.687477 | contig527end:+16419 | None:intergenic |
| GGGTCAGAACATCTTCAACA+AGG | 0.687489 | contig527end:-16445 | MsG0080048904.01.T01:CDS |
| AAGATCTGAAACTATGCACA+GGG | 0.691379 | contig527end:-16648 | MsG0080048904.01.T01:CDS |
| TCCACTGCAATCTATAGACG+GGG | 0.695910 | contig527end:+17600 | None:intergenic |
| ACAGGGTATCAAATGATACA+CGG | 0.702872 | contig527end:-16631 | MsG0080048904.01.T01:CDS |
| ATTGTCTGAAACAATACACA+GGG | 0.727300 | contig527end:-16774 | MsG0080048904.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATATGGATATATGGTAT+CGG | - | contig527end:16744-16763 | MsG0080048904.01.T01:CDS | 20.0% |
| ! | AAATGTTCTTCTTATGAGAA+GGG | - | contig527end:16502-16521 | MsG0080048904.01.T01:CDS | 25.0% |
| ! | GGTATATGAACTGTAAAAAA+AGG | - | contig527end:16779-16798 | MsG0080048904.01.T01:CDS | 25.0% |
| ! | TATGATTTCTCTGATTAGTA+TGG | + | contig527end:17353-17372 | None:intergenic | 25.0% |
| ! | TGTTGAGAATTATTATAGAG+AGG | - | contig527end:17467-17486 | MsG0080048904.01.T01:CDS | 25.0% |
| AACCAAACAACTTACAGAAT+TGG | + | contig527end:16579-16598 | None:intergenic | 30.0% | |
| GAAATGTTCTTCTTATGAGA+AGG | - | contig527end:16501-16520 | MsG0080048904.01.T01:CDS | 30.0% | |
| ! | ATTGTCTGAAACAATACACA+GGG | - | contig527end:17170-17189 | MsG0080048904.01.T01:CDS | 30.0% |
| ! | TATTGTCTGAAACAATACAC+AGG | - | contig527end:17169-17188 | MsG0080048904.01.T01:CDS | 30.0% |
| !! | ATTTTTGGAGATGAAAGGAT+AGG | + | contig527end:16377-16396 | None:intergenic | 30.0% |
| !! | TCAAGATTTTTGGAGATGAA+AGG | + | contig527end:16382-16401 | None:intergenic | 30.0% |
| !! | TTTTTGGAGATGAAAGGATA+GGG | + | contig527end:16376-16395 | None:intergenic | 30.0% |
| AATCAGAGAAATCATAGAGC+TGG | - | contig527end:17357-17376 | MsG0080048904.01.T01:CDS | 35.0% | |
| AGTAAATTTCACGCAAGACA+AGG | + | contig527end:17032-17051 | None:intergenic | 35.0% | |
| CGTGAAATTTACTCTGTTGA+AGG | - | contig527end:17039-17058 | MsG0080048904.01.T01:CDS | 35.0% | |
| GACCAATTCTGTAAGTTGTT+TGG | - | contig527end:16574-16593 | MsG0080048904.01.T01:CDS | 35.0% | |
| GGCTGATGAAATGAAAGAAT+GGG | - | contig527end:16426-16445 | MsG0080048904.01.T01:CDS | 35.0% | |
| GGGAGGAATATATGGATATA+TGG | - | contig527end:16738-16757 | MsG0080048904.01.T01:CDS | 35.0% | |
| TAACTGGTATTGCACATGTA+AGG | + | contig527end:16535-16554 | None:intergenic | 35.0% | |
| TATATCCATATATTCCTCCC+CGG | + | contig527end:16738-16757 | None:intergenic | 35.0% | |
| TCTGTTATCATCAAACCGTA+TGG | - | contig527end:17392-17411 | MsG0080048904.01.T01:CDS | 35.0% | |
| TGAAAGAATGGGATGATACT+AGG | - | contig527end:16437-16456 | MsG0080048904.01.T01:CDS | 35.0% | |
| TGAGGAATTTCCATGCAAAT+AGG | + | contig527end:16466-16485 | None:intergenic | 35.0% | |
| TTCAGAAGAACAGTGTTATG+AGG | + | contig527end:16484-16503 | None:intergenic | 35.0% | |
| ! | AAGATCTGAAACTATGCACA+GGG | - | contig527end:17296-17315 | MsG0080048904.01.T01:CDS | 35.0% |
| ! | ACAGGGTATCAAATGATACA+CGG | - | contig527end:17313-17332 | MsG0080048904.01.T01:CDS | 35.0% |
| AAGTTCCTCATACTAATCCC+CGG | - | contig527end:17538-17557 | MsG0080048904.01.T01:CDS | 40.0% | |
| AATGTTTGATCTCCTCCATC+TGG | + | contig527end:17418-17437 | None:intergenic | 40.0% | |
| ACAGAATTGGTCAAGACAGT+TGG | + | contig527end:16566-16585 | None:intergenic | 40.0% | |
| ACATGTGCAATACCAGTTAC+AGG | - | contig527end:16536-16555 | MsG0080048904.01.T01:CDS | 40.0% | |
| ATCCAAAATTAGGTCTAGGC+AGG | + | contig527end:16405-16424 | None:intergenic | 40.0% | |
| ATCCACTGCAATCTATAGAC+GGG | + | contig527end:16348-16367 | None:intergenic | 40.0% | |
| CAAGAACAGTCTCTCATGAT+AGG | - | contig527end:16638-16657 | MsG0080048904.01.T01:CDS | 40.0% | |
| CGGCTGATGAAATGAAAGAA+TGG | - | contig527end:16425-16444 | MsG0080048904.01.T01:CDS | 40.0% | |
| GATCAAACATTTCGCCTTCA+AGG | - | contig527end:17427-17446 | MsG0080048904.01.T01:CDS | 40.0% | |
| GATCCACTGCAATCTATAGA+CGG | + | contig527end:16349-16368 | None:intergenic | 40.0% | |
| GCAACAATTCTTCGTCTAGA+AGG | - | contig527end:17562-17581 | MsG0080048904.01.T01:CDS | 40.0% | |
| TAATCTCTCATCAGCAATGC+TGG | - | contig527end:16600-16619 | MsG0080048904.01.T01:CDS | 40.0% | |
| TACTAGGTGTCCTATTTGCA+TGG | - | contig527end:16453-16472 | MsG0080048904.01.T01:CDS | 40.0% | |
| TAGACGAAGAATTGTTGCTC+CGG | + | contig527end:17560-17579 | None:intergenic | 40.0% | |
| TCAGATCTTCTGTCATGTGA+TGG | + | contig527end:17285-17304 | None:intergenic | 40.0% | |
| TCATCAGCCGATCCAAAATT+AGG | + | contig527end:16415-16434 | None:intergenic | 40.0% | |
| TGGTATTGCACATGTAAGGT+CGG | + | contig527end:16531-16550 | None:intergenic | 40.0% | |
| TTCTCAACAATCTGACTGTG+AGG | + | contig527end:17456-17475 | None:intergenic | 40.0% | |
| ! | ATCAATGCAAGTTCTGATGC+AGG | - | contig527end:16967-16986 | MsG0080048904.01.T01:CDS | 40.0% |
| ! | GAAGATCTGAAACTATGCAC+AGG | - | contig527end:17295-17314 | MsG0080048904.01.T01:CDS | 40.0% |
| ! | GCCTAGACCTAATTTTGGAT+CGG | - | contig527end:16405-16424 | MsG0080048904.01.T01:CDS | 40.0% |
| ! | TCTAGGCAGGTCAAGATTTT+TGG | + | contig527end:16392-16411 | None:intergenic | 40.0% |
| AAGACCTAGAATGCCAGTAC+AGG | - | contig527end:17092-17111 | MsG0080048904.01.T01:CDS | 45.0% | |
| ACTTCTGTTGGTCGAACAGA+AGG | + | contig527end:16877-16896 | None:intergenic | 45.0% | |
| AGACGAAGAATTGTTGCTCC+GGG | + | contig527end:17559-17578 | None:intergenic | 45.0% | |
| AGGGCACATATCCAGAACTT+AGG | - | contig527end:16830-16849 | MsG0080048904.01.T01:CDS | 45.0% | |
| ATTATAGAGAGGTGATCCCC+AGG | - | contig527end:17478-17497 | MsG0080048904.01.T01:CDS | 45.0% | |
| CAAAGAGGGCAGATAAGCTT+TGG | + | contig527end:16715-16734 | None:intergenic | 45.0% | |
| CAGTTCATATACCTTCGAGC+AGG | + | contig527end:16772-16791 | None:intergenic | 45.0% | |
| CTAGCATGCTTCCTAAGTTC+TGG | + | contig527end:16844-16863 | None:intergenic | 45.0% | |
| CTCAATACACATGCCAGCAA+CGG | - | contig527end:17137-17156 | MsG0080048904.01.T01:CDS | 45.0% | |
| CTGTCATGTGATGGCATTCT+AGG | + | contig527end:17276-17295 | None:intergenic | 45.0% | |
| GACAAATCCCTCTGTTGAAG+AGG | - | contig527end:17209-17228 | MsG0080048904.01.T01:CDS | 45.0% | |
| GCCGATCCAAAATTAGGTCT+AGG | + | contig527end:16409-16428 | None:intergenic | 45.0% | |
| GGGTCAGAACATCTTCAACA+AGG | - | contig527end:17499-17518 | MsG0080048904.01.T01:CDS | 45.0% | |
| GTTGAAGATGTTCTGACCCT+GGG | + | contig527end:17498-17517 | None:intergenic | 45.0% | |
| TCAGTGTCCTCTTCAACAGA+GGG | + | contig527end:17219-17238 | None:intergenic | 45.0% | |
| TCCACTGCAATCTATAGACG+GGG | + | contig527end:16347-16366 | None:intergenic | 45.0% | |
| TCTTCGTCTAGAAGGATTCC+TGG | - | contig527end:17570-17589 | MsG0080048904.01.T01:CDS | 45.0% | |
| TGAGAGACTGTTCTTGTGAG+AGG | + | contig527end:16634-16653 | None:intergenic | 45.0% | |
| TGAGGAACTTGTGAAACTCG+AGG | + | contig527end:17528-17547 | None:intergenic | 45.0% | |
| TGTTGAAGATGTTCTGACCC+TGG | + | contig527end:17499-17518 | None:intergenic | 45.0% | |
| TTATAGAGAGGTGATCCCCA+GGG | - | contig527end:17479-17498 | MsG0080048904.01.T01:CDS | 45.0% | |
| TTCCTGGTAGTCATTTGCGT+TGG | - | contig527end:17586-17605 | MsG0080048904.01.T01:CDS | 45.0% | |
| TTGAAGATGTTCTGACCCTG+GGG | + | contig527end:17497-17516 | None:intergenic | 45.0% | |
| ! | CAGAACTTAGGAAGCATGCT+AGG | - | contig527end:16842-16861 | MsG0080048904.01.T01:CDS | 45.0% |
| ! | GACCTGCCTAGACCTAATTT+TGG | - | contig527end:16400-16419 | MsG0080048904.01.T01:CDS | 45.0% |
| ! | GATCGCCCTCTTCTAACTTT+TGG | + | contig527end:16325-16344 | None:intergenic | 45.0% |
| !! | TAAGTTCTGGATATGTGCCC+TGG | + | contig527end:16831-16850 | None:intergenic | 45.0% |
| !! | TCAGTATGACTGGCTTAGGA+TGG | - | contig527end:16909-16928 | MsG0080048904.01.T01:CDS | 45.0% |
| AAGACAAGGACCAAAGCCTC+AGG | + | contig527end:17018-17037 | None:intergenic | 50.0% | |
| AATACACCCAATGCCGTTGC+TGG | + | contig527end:17153-17172 | None:intergenic | 50.0% | |
| AGCCAGTCATACTGACGTGA+CGG | + | contig527end:16904-16923 | None:intergenic | 50.0% | |
| AGCTTATCTGCCCTCTTTGC+CGG | - | contig527end:16716-16735 | MsG0080048904.01.T01:CDS | 50.0% | |
| ATATTCCTCCCCGGCAAAGA+GGG | + | contig527end:16729-16748 | None:intergenic | 50.0% | |
| ATCCGTCACGTCAGTATGAC+TGG | - | contig527end:16899-16918 | MsG0080048904.01.T01:CDS | 50.0% | |
| ATCTCCTCCATCTGGCCATA+CGG | + | contig527end:17410-17429 | None:intergenic | 50.0% | |
| CATCAAACCGTATGGCCAGA+TGG | - | contig527end:17400-17419 | MsG0080048904.01.T01:CDS | 50.0% | |
| CTGTTGAAGAGGACACTGAC+TGG | - | contig527end:17220-17239 | MsG0080048904.01.T01:CDS | 50.0% | |
| CTGTTGAAGGCAACACTGAC+TGG | - | contig527end:17052-17071 | MsG0080048904.01.T01:CDS | 50.0% | |
| CTTTGCCGGGGAGGAATATA+TGG | - | contig527end:16730-16749 | MsG0080048904.01.T01:CDS | 50.0% | |
| GAATGCCAGTACAGGACGAA+TGG | - | contig527end:17100-17119 | MsG0080048904.01.T01:CDS | 50.0% | |
| GACGAAGAATTGTTGCTCCG+GGG | + | contig527end:17558-17577 | None:intergenic | 50.0% | |
| GCTTAGGATGGAACAGGAGA+GGG | - | contig527end:16921-16940 | MsG0080048904.01.T01:CDS | 50.0% | |
| GTCAGTGTCCTCTTCAACAG+AGG | + | contig527end:17220-17239 | None:intergenic | 50.0% | |
| TATATTCCTCCCCGGCAAAG+AGG | + | contig527end:16730-16749 | None:intergenic | 50.0% | |
| TCAGACCATTCGTCCTGTAC+TGG | + | contig527end:17108-17127 | None:intergenic | 50.0% | |
| TCCCCGTCTATAGATTGCAG+TGG | - | contig527end:16343-16362 | MsG0080048904.01.T01:CDS | 50.0% | |
| ! | ACAGTTGGAGTGCCTGTAAC+TGG | + | contig527end:16551-16570 | None:intergenic | 50.0% |
| ! | ACTTAGGAAGCATGCTAGGC+TGG | - | contig527end:16846-16865 | MsG0080048904.01.T01:CDS | 50.0% |
| ! | CATTTGCGTTGGCGCAATCA+AGG | - | contig527end:17597-17616 | MsG0080048904.01.T01:CDS | 50.0% |
| ! | TCGTCCTGTACTGGCATTCT+AGG | + | contig527end:17099-17118 | None:intergenic | 50.0% |
| ! | TCTGAGACGTGTGAGTTCCA+GGG | - | contig527end:16811-16830 | MsG0080048904.01.T01:CDS | 50.0% |
| ! | TGACTGTGAGGCATCCTTGA+AGG | + | contig527end:17444-17463 | None:intergenic | 50.0% |
| ! | TTGCAGCTTGCTCCCACATT+GGG | + | contig527end:16692-16711 | None:intergenic | 50.0% |
| ! | TTGCTCCGGGGATTAGTATG+AGG | + | contig527end:17546-17565 | None:intergenic | 50.0% |
| !! | CACGTCAGTATGACTGGCTT+AGG | - | contig527end:16905-16924 | MsG0080048904.01.T01:CDS | 50.0% |
| !! | CGTGACGGATCTACTTCTGT+TGG | + | contig527end:16889-16908 | None:intergenic | 50.0% |
| !! | TGACTGGCTTAGGATGGAAC+AGG | - | contig527end:16915-16934 | MsG0080048904.01.T01:CDS | 50.0% |
| !! | TTCTGAGACGTGTGAGTTCC+AGG | - | contig527end:16810-16829 | MsG0080048904.01.T01:CDS | 50.0% |
| ACACATGCCAGCAACGGCAT+TGG | - | contig527end:17143-17162 | MsG0080048904.01.T01:CDS | 55.0% | |
| AGAAGACTCCATGTCGCCTG+AGG | - | contig527end:16999-17018 | MsG0080048904.01.T01:CDS | 55.0% | |
| AGGAAAGCTCAGTCAGAGCC+TGG | - | contig527end:16658-16677 | MsG0080048904.01.T01:CDS | 55.0% | |
| CAAACCGTATGGCCAGATGG+AGG | - | contig527end:17403-17422 | MsG0080048904.01.T01:CDS | 55.0% | |
| CACATGCCAGCAACGGCATT+GGG | - | contig527end:17144-17163 | MsG0080048904.01.T01:CDS | 55.0% | |
| CGCCAACGCAAATGACTACC+AGG | + | contig527end:17591-17610 | None:intergenic | 55.0% | |
| CTTATCTGCCCTCTTTGCCG+GGG | - | contig527end:16718-16737 | MsG0080048904.01.T01:CDS | 55.0% | |
| GCTTATCTGCCCTCTTTGCC+GGG | - | contig527end:16717-16736 | MsG0080048904.01.T01:CDS | 55.0% | |
| GGAAAGCTCAGTCAGAGCCT+GGG | - | contig527end:16659-16678 | MsG0080048904.01.T01:CDS | 55.0% | |
| GGCTTAGGATGGAACAGGAG+AGG | - | contig527end:16920-16939 | MsG0080048904.01.T01:CDS | 55.0% | |
| ! | AGCTTGCTCCCACATTGGGA+GGG | + | contig527end:16688-16707 | None:intergenic | 55.0% |
| ! | GTTGCAGCTTGCTCCCACAT+TGG | + | contig527end:16693-16712 | None:intergenic | 55.0% |
| ! | TGCGTTGGCGCAATCAAGGA+TGG | - | contig527end:17601-17620 | MsG0080048904.01.T01:CDS | 55.0% |
| ! | TGGTATCGGAACCTGCTCGA+AGG | - | contig527end:16758-16777 | MsG0080048904.01.T01:CDS | 55.0% |
| CTCCATGTCGCCTGAGGCTT+TGG | - | contig527end:17005-17024 | MsG0080048904.01.T01:CDS | 60.0% | |
| CTGGGAACCCCTCCCAATGT+GGG | - | contig527end:16677-16696 | MsG0080048904.01.T01:CDS | 60.0% | |
| GACCAAAGCCTCAGGCGACA+TGG | + | contig527end:17010-17029 | None:intergenic | 60.0% | |
| GCTTGCTCCCACATTGGGAG+GGG | + | contig527end:16687-16706 | None:intergenic | 60.0% | |
| ! | CAGCTTGCTCCCACATTGGG+AGG | + | contig527end:16689-16708 | None:intergenic | 60.0% |
| ATCTGCCCTCTTTGCCGGGG+AGG | - | contig527end:16721-16740 | MsG0080048904.01.T01:CDS | 65.0% | |
| CCACATTGGGAGGGGTTCCC+AGG | + | contig527end:16679-16698 | None:intergenic | 65.0% | |
| CCTGGGAACCCCTCCCAATG+TGG | - | contig527end:16676-16695 | MsG0080048904.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig527end | gene | 16319 | 17647 | 16319 | ID=MsG0080048904.01;Name=MsG0080048904.01 |
| contig527end | mRNA | 16319 | 17647 | 16319 | ID=MsG0080048904.01.T01;Parent=MsG0080048904.01;Name=MsG0080048904.01.T01;_AED=0.33;_eAED=0.33;_QI=0|-1|0|1|-1|1|1|0|442 |
| contig527end | exon | 16319 | 17647 | 16319 | ID=MsG0080048904.01.T01:exon:3769;Parent=MsG0080048904.01.T01 |
| contig527end | CDS | 16319 | 17647 | 16319 | ID=MsG0080048904.01.T01:cds;Parent=MsG0080048904.01.T01 |
| Gene Sequence |
| Protein sequence |
