Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048349.01.T01 | ATI97627.1 | 98.485 | 66 | 1 | 0 | 1 | 66 | 59 | 124 | 6.70E-39 | 134 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048349.01.T01 | P51078 | 100 | 66 | 0 | 0 | 1 | 66 | 324 | 389 | 1.92E-39 | 135 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048349.01.T01 | A0A291NHK4 | 100.000 | 66 | 0 | 0 | 1 | 66 | 324 | 389 | 5.90e-37 | 136 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080047831.01 | MsG0080048349.01 | 0.800862 | 1.181012e-48 | 5.558720e-46 |
MsG0080048036.01 | MsG0080048349.01 | 0.852403 | 4.724625e-61 | 9.860773e-58 |
MsG0080048301.01 | MsG0080048349.01 | 0.816991 | 4.156185e-52 | 2.990150e-49 |
MsG0080048345.01 | MsG0080048349.01 | 0.918777 | 1.024580e-86 | 3.175463e-82 |
MsG0080048347.01 | MsG0080048349.01 | 0.946412 | 4.847749e-105 | 7.939372e-100 |
MsG0080048348.01 | MsG0080048349.01 | 0.908787 | 1.166132e-81 | 2.201096e-77 |
MsG0080048349.01 | MsG0080048350.01 | 0.932973 | 3.801362e-95 | 2.627893e-90 |
MsG0080048349.01 | MsG0080048352.01 | 0.955982 | 8.593437e-114 | 2.703403e-108 |
MsG0080048349.01 | MsG0180000234.01 | 0.817789 | 2.747596e-52 | 2.020360e-49 |
MsG0080048349.01 | MsG0180000337.01 | 0.810064 | 1.387978e-50 | 8.285071e-48 |
MsG0080048349.01 | MsG0180000930.01 | 0.818984 | 1.473412e-52 | 1.119803e-49 |
MsG0080048349.01 | MsG0180001050.01 | 0.823353 | 1.450238e-53 | 1.245595e-50 |
MsG0080048349.01 | MsG0180001072.01 | -0.804795 | 1.819332e-49 | 9.467793e-47 |
MsG0080048349.01 | MsG0180001463.01 | 0.809041 | 2.302159e-50 | 1.337377e-47 |
MsG0080048349.01 | MsG0180001533.01 | 0.827734 | 1.328432e-54 | 1.293483e-51 |
MsG0080048349.01 | MsG0180002274.01 | 0.800624 | 1.320560e-48 | 6.178001e-46 |
MsG0080048349.01 | MsG0180002935.01 | 0.810998 | 8.719668e-51 | 5.335996e-48 |
MsG0080048349.01 | MsG0180003235.01 | 0.816800 | 4.587709e-52 | 3.283015e-49 |
MsG0080048349.01 | MsG0180003240.01 | 0.833601 | 4.856242e-56 | 5.619942e-53 |
MsG0080048349.01 | MsG0180003248.01 | 0.819829 | 9.456462e-53 | 7.356945e-50 |
MsG0080048349.01 | MsG0180003757.01 | -0.804445 | 2.152951e-49 | 1.110245e-46 |
MsG0080048349.01 | MsG0180003830.01 | 0.813621 | 2.332879e-51 | 1.531080e-48 |
MsG0080048349.01 | MsG0180004203.01 | 0.843504 | 1.345690e-58 | 2.109845e-55 |
MsG0080048349.01 | MsG0180004328.01 | 0.819743 | 9.894922e-53 | 7.679602e-50 |
MsG0080048349.01 | MsG0180004562.01 | 0.815759 | 7.841682e-52 | 5.454547e-49 |
MsG0080048349.01 | MsG0180004942.01 | 0.818526 | 1.872177e-52 | 1.404838e-49 |
MsG0080048349.01 | MsG0180005356.01 | 0.930901 | 8.330290e-94 | 5.090939e-89 |
MsG0080048349.01 | MsG0180005357.01 | 0.941645 | 2.897395e-101 | 3.439372e-96 |
MsG0080048349.01 | MsG0180005358.01 | 0.927461 | 1.137412e-91 | 5.683527e-87 |
MsG0080048349.01 | MsG0180005417.01 | 0.821246 | 4.471544e-53 | 3.618386e-50 |
MsG0080048349.01 | MsG0180005648.01 | 0.842960 | 1.879525e-58 | 2.896387e-55 |
MsG0080048349.01 | MsG0280006442.01 | 0.821999 | 2.994896e-53 | 2.475482e-50 |
MsG0080048349.01 | MsG0280006883.01 | 0.827676 | 1.371714e-54 | 1.333395e-51 |
MsG0080048349.01 | MsG0280007216.01 | 0.830651 | 2.605023e-55 | 2.761715e-52 |
MsG0080048349.01 | MsG0280007759.01 | 0.815085 | 1.107417e-51 | 7.561425e-49 |
MsG0080048349.01 | MsG0280007911.01 | 0.843976 | 1.006000e-58 | 1.600752e-55 |
MsG0080048349.01 | MsG0280008405.01 | 0.863897 | 1.792518e-64 | 5.522187e-61 |
MsG0080048349.01 | MsG0280008747.01 | 0.803265 | 3.786465e-49 | 1.894302e-46 |
MsG0080048349.01 | MsG0280010410.01 | 0.807004 | 6.245914e-50 | 3.439836e-47 |
MsG0080048349.01 | MsG0280010802.01 | 0.836701 | 8.021957e-57 | 1.018951e-53 |
MsG0080048349.01 | MsG0280011042.01 | 0.813576 | 2.387340e-51 | 1.564891e-48 |
MsG0080048349.01 | MsG0280011053.01 | 0.807232 | 5.589085e-50 | 3.096412e-47 |
MsG0080048349.01 | MsG0280011165.01 | 0.844275 | 8.364281e-59 | 1.343436e-55 |
MsG0080048349.01 | MsG0280011193.01 | 0.834538 | 2.828090e-56 | 3.366498e-53 |
MsG0080048349.01 | MsG0280011203.01 | 0.827137 | 1.846574e-54 | 1.767073e-51 |
MsG0080048349.01 | MsG0280011238.01 | 0.809192 | 2.136808e-50 | 1.246406e-47 |
MsG0080048349.01 | MsG0380011613.01 | 0.859643 | 3.587649e-63 | 9.542334e-60 |
MsG0080048349.01 | MsG0380011635.01 | 0.829585 | 4.742307e-55 | 4.874419e-52 |
MsG0080048349.01 | MsG0380011638.01 | 0.836712 | 7.967101e-57 | 1.012331e-53 |
MsG0080048349.01 | MsG0380011974.01 | 0.834502 | 2.888352e-56 | 3.434389e-53 |
MsG0080048349.01 | MsG0380012654.01 | 0.837670 | 4.531700e-57 | 5.929663e-54 |
MsG0080048349.01 | MsG0380013114.01 | -0.805656 | 1.201640e-49 | 6.393053e-47 |
MsG0080048349.01 | MsG0380013272.01 | 0.824116 | 9.606230e-54 | 8.430971e-51 |
MsG0080048349.01 | MsG0380013278.01 | 0.832338 | 1.001051e-55 | 1.115434e-52 |
MsG0080048349.01 | MsG0380013300.01 | 0.864828 | 9.180947e-65 | 2.922347e-61 |
MsG0080048349.01 | MsG0380013449.01 | 0.827613 | 1.420241e-54 | 1.377933e-51 |
MsG0080048349.01 | MsG0380013452.01 | 0.828212 | 1.019322e-54 | 1.006536e-51 |
MsG0080048349.01 | MsG0380013458.01 | 0.812027 | 5.211048e-51 | 3.276548e-48 |
MsG0080048349.01 | MsG0380014934.01 | 0.804082 | 2.561934e-49 | 1.308943e-46 |
MsG0080048349.01 | MsG0380015010.01 | 0.818383 | 2.017682e-52 | 1.508140e-49 |
MsG0080048349.01 | MsG0380015323.01 | 0.804204 | 2.417005e-49 | 1.238695e-46 |
MsG0080048349.01 | MsG0380015572.01 | 0.808500 | 3.003422e-50 | 1.720128e-47 |
MsG0080048349.01 | MsG0380015629.01 | 0.813360 | 2.662234e-51 | 1.734970e-48 |
MsG0080048349.01 | MsG0380016270.01 | 0.809192 | 2.136650e-50 | 1.246315e-47 |
MsG0080048349.01 | MsG0380016801.01 | 0.809678 | 1.680069e-50 | 9.927672e-48 |
MsG0080048349.01 | MsG0380016862.01 | 0.811970 | 5.363377e-51 | 3.367168e-48 |
MsG0080048349.01 | MsG0380016935.01 | -0.800576 | 1.351097e-48 | 6.313109e-46 |
MsG0080048349.01 | MsG0380017151.01 | 0.841184 | 5.541419e-58 | 8.077796e-55 |
MsG0080048349.01 | MsG0380017405.01 | -0.815264 | 1.010445e-51 | 6.933270e-49 |
MsG0080048349.01 | MsG0380017690.01 | 0.874735 | 5.354421e-68 | 2.436843e-64 |
MsG0080048349.01 | MsG0380017754.01 | 0.819676 | 1.024657e-52 | 7.937471e-50 |
MsG0080048349.01 | MsG0380018026.01 | 0.810063 | 1.388757e-50 | 8.289451e-48 |
MsG0080048349.01 | MsG0480018440.01 | 0.807721 | 4.401587e-50 | 2.469738e-47 |
MsG0080048349.01 | MsG0480018628.01 | -0.804627 | 1.972603e-49 | 1.022029e-46 |
MsG0080048349.01 | MsG0480019105.01 | 0.804541 | 2.055617e-49 | 1.062682e-46 |
MsG0080048349.01 | MsG0480019295.01 | 0.828144 | 1.058131e-54 | 1.042802e-51 |
MsG0080048349.01 | MsG0480019726.01 | 0.817730 | 2.834279e-52 | 2.080692e-49 |
MsG0080048349.01 | MsG0480020497.01 | 0.854859 | 9.294878e-62 | 2.105126e-58 |
MsG0080048349.01 | MsG0480020986.01 | 0.809473 | 1.859685e-50 | 1.092874e-47 |
MsG0080048349.01 | MsG0480021131.01 | 0.803121 | 4.054977e-49 | 2.021126e-46 |
MsG0080048349.01 | MsG0480021135.01 | 0.801205 | 1.005064e-48 | 4.771621e-46 |
MsG0080048349.01 | MsG0480021327.01 | -0.807227 | 5.603009e-50 | 3.103709e-47 |
MsG0080048349.01 | MsG0480021331.01 | -0.801907 | 7.214233e-49 | 3.486469e-46 |
MsG0080048349.01 | MsG0480022125.01 | 0.818220 | 2.195797e-52 | 1.633724e-49 |
MsG0080048349.01 | MsG0480022309.01 | 0.850970 | 1.202721e-60 | 2.397526e-57 |
MsG0080048349.01 | MsG0480022310.01 | 0.816941 | 4.264922e-52 | 3.064227e-49 |
MsG0080048349.01 | MsG0480022655.01 | 0.802820 | 4.678753e-49 | 2.314444e-46 |
MsG0080048349.01 | MsG0480022680.01 | 0.802668 | 5.029772e-49 | 2.478240e-46 |
MsG0080048349.01 | MsG0480022735.01 | 0.833616 | 4.814532e-56 | 5.573912e-53 |
MsG0080048349.01 | MsG0480022736.01 | 0.833884 | 4.126758e-56 | 4.816735e-53 |
MsG0080048349.01 | MsG0480022833.01 | 0.805809 | 1.115696e-49 | 5.959311e-47 |
MsG0080048349.01 | MsG0480023107.01 | 0.855344 | 6.717792e-62 | 1.546375e-58 |
MsG0080048349.01 | MsG0480023152.01 | -0.800520 | 1.386862e-48 | 6.471041e-46 |
MsG0080048349.01 | MsG0480023349.01 | 0.835185 | 1.944074e-56 | 2.359308e-53 |
MsG0080048349.01 | MsG0480023819.01 | 0.816954 | 4.235730e-52 | 3.044412e-49 |
MsG0080048349.01 | MsG0480023921.01 | 0.810342 | 1.208686e-50 | 7.267316e-48 |
MsG0080048349.01 | MsG0580024217.01 | 0.839274 | 1.747959e-57 | 2.401647e-54 |
MsG0080048349.01 | MsG0580024218.01 | 0.873826 | 1.087792e-67 | 4.787162e-64 |
MsG0080048349.01 | MsG0580024219.01 | 0.861000 | 1.394839e-63 | 3.887130e-60 |
MsG0080048349.01 | MsG0580024220.01 | 0.848638 | 5.395728e-60 | 9.965699e-57 |
MsG0080048349.01 | MsG0580024260.01 | 0.869173 | 3.776678e-66 | 1.403844e-62 |
MsG0080048349.01 | MsG0580024408.01 | 0.843281 | 1.542730e-58 | 2.401989e-55 |
MsG0080048349.01 | MsG0580024986.01 | 0.825211 | 5.305456e-54 | 4.804896e-51 |
MsG0080048349.01 | MsG0580024990.01 | 0.824995 | 5.965190e-54 | 5.369402e-51 |
MsG0080048349.01 | MsG0580025682.01 | 0.816232 | 6.149565e-52 | 4.332978e-49 |
MsG0080048349.01 | MsG0580025683.01 | 0.843567 | 1.294099e-58 | 2.033037e-55 |
MsG0080048349.01 | MsG0580025870.01 | 0.864818 | 9.245644e-65 | 2.941797e-61 |
MsG0080048349.01 | MsG0580026925.01 | 0.819914 | 9.042206e-53 | 7.051656e-50 |
MsG0080048349.01 | MsG0580027638.01 | 0.849811 | 2.543717e-60 | 4.881316e-57 |
MsG0080048349.01 | MsG0580027733.01 | 0.802620 | 5.144759e-49 | 2.531883e-46 |
MsG0080048349.01 | MsG0580028999.01 | 0.843530 | 1.324039e-58 | 2.077500e-55 |
MsG0080048349.01 | MsG0580029296.01 | 0.805718 | 1.165733e-49 | 6.212311e-47 |
MsG0080048349.01 | MsG0580029555.01 | 0.830183 | 3.389990e-55 | 3.545573e-52 |
MsG0080048349.01 | MsG0580029583.01 | 0.819155 | 1.347044e-52 | 1.028435e-49 |
MsG0080048349.01 | MsG0580029626.01 | 0.819298 | 1.250082e-52 | 9.581555e-50 |
MsG0080048349.01 | MsG0580029782.01 | 0.808984 | 2.366997e-50 | 1.372937e-47 |
MsG0080048349.01 | MsG0580030133.01 | 0.887315 | 1.590238e-72 | 1.176668e-68 |
MsG0080048349.01 | MsG0580030135.01 | 0.875100 | 4.021812e-68 | 1.854911e-64 |
MsG0080048349.01 | MsG0580030145.01 | 0.868553 | 5.994557e-66 | 2.177621e-62 |
MsG0080048349.01 | MsG0580030181.01 | 0.826945 | 2.053196e-54 | 1.953861e-51 |
MsG0080048349.01 | MsG0680030336.01 | 0.827497 | 1.514000e-54 | 1.464162e-51 |
MsG0080048349.01 | MsG0680031009.01 | 0.813236 | 2.834357e-51 | 1.840694e-48 |
MsG0080048349.01 | MsG0680031429.01 | 0.839879 | 1.216896e-57 | 1.703448e-54 |
MsG0080048349.01 | MsG0680034229.01 | -0.803884 | 2.817092e-49 | 1.432035e-46 |
MsG0080048349.01 | MsG0680035496.01 | 0.815573 | 8.625123e-52 | 5.968784e-49 |
MsG0080048349.01 | MsG0680035841.01 | 0.856589 | 2.904598e-62 | 6.968094e-59 |
MsG0080048349.01 | MsG0780035953.01 | 0.822347 | 2.486534e-53 | 2.075942e-50 |
MsG0080048349.01 | MsG0780036661.01 | 0.879560 | 1.127622e-69 | 6.140863e-66 |
MsG0080048349.01 | MsG0780037943.01 | 0.825529 | 4.460865e-54 | 4.076462e-51 |
MsG0080048349.01 | MsG0780038625.01 | 0.806258 | 8.977232e-50 | 4.850498e-47 |
MsG0080048349.01 | MsG0780038755.01 | 0.807507 | 4.888113e-50 | 2.727569e-47 |
MsG0080048349.01 | MsG0780038922.01 | 0.845931 | 2.984177e-59 | 5.053344e-56 |
MsG0080048349.01 | MsG0780038924.01 | 0.807482 | 4.946803e-50 | 2.758497e-47 |
MsG0080048349.01 | MsG0780038939.01 | 0.829904 | 3.965329e-55 | 4.114301e-52 |
MsG0080048349.01 | MsG0780039190.01 | 0.852238 | 5.262587e-61 | 1.092623e-57 |
MsG0080048349.01 | MsG0780039576.01 | 0.888016 | 8.580157e-73 | 6.532384e-69 |
MsG0080048349.01 | MsG0780039968.01 | 0.876014 | 1.954634e-68 | 9.326710e-65 |
MsG0080048349.01 | MsG0780039978.01 | 0.841356 | 4.993181e-58 | 7.317849e-55 |
MsG0080048349.01 | MsG0780040181.01 | 0.825015 | 5.902910e-54 | 5.316348e-51 |
MsG0080048349.01 | MsG0780040480.01 | 0.840078 | 1.079794e-57 | 1.521156e-54 |
MsG0080048349.01 | MsG0780040613.01 | 0.821735 | 3.446509e-53 | 2.827458e-50 |
MsG0080048349.01 | MsG0780040805.01 | 0.805734 | 1.157012e-49 | 6.168455e-47 |
MsG0080048349.01 | MsG0780041198.01 | 0.802260 | 6.103772e-49 | 2.976406e-46 |
MsG0080048349.01 | MsG0780041254.01 | -0.807417 | 5.106727e-50 | 2.842840e-47 |
MsG0080048349.01 | MsG0780041316.01 | 0.839408 | 1.612852e-57 | 2.225459e-54 |
MsG0080048349.01 | MsG0780041556.01 | 0.924198 | 9.703755e-90 | 4.045428e-85 |
MsG0080048349.01 | MsG0780041720.01 | -0.809755 | 1.617303e-50 | 9.576521e-48 |
MsG0080048349.01 | MsG0780041783.01 | -0.803840 | 2.877048e-49 | 1.460839e-46 |
MsG0080048349.01 | MsG0880042740.01 | 0.822574 | 2.202460e-53 | 1.850829e-50 |
MsG0080048349.01 | MsG0880042810.01 | 0.825937 | 3.569227e-54 | 3.300097e-51 |
MsG0080048349.01 | MsG0880042858.01 | -0.809283 | 2.042937e-50 | 1.194540e-47 |
MsG0080048349.01 | MsG0880043364.01 | 0.809643 | 1.709994e-50 | 1.009542e-47 |
MsG0080048349.01 | MsG0880043481.01 | 0.822768 | 1.985424e-53 | 1.677566e-50 |
MsG0080048349.01 | MsG0880043744.01 | 0.825900 | 3.643061e-54 | 3.364790e-51 |
MsG0080048349.01 | MsG0880043824.01 | 0.813884 | 2.041646e-51 | 1.349513e-48 |
MsG0080048349.01 | MsG0880043828.01 | 0.858043 | 1.079834e-62 | 2.719617e-59 |
MsG0080048349.01 | MsG0880045441.01 | 0.846990 | 1.534556e-59 | 2.688518e-56 |
MsG0080048349.01 | MsG0880045677.01 | 0.846852 | 1.674330e-59 | 2.920543e-56 |
MsG0080048349.01 | MsG0880046429.01 | 0.853176 | 2.841305e-61 | 6.085055e-58 |
MsG0080048349.01 | MsG0880046469.01 | -0.816444 | 5.512863e-52 | 3.906709e-49 |
MsG0080048349.01 | MsG0880046822.01 | 0.815209 | 1.039302e-51 | 7.120155e-49 |
MsG0080048349.01 | MsG0880046863.01 | 0.817309 | 3.526133e-52 | 2.558741e-49 |
MsG0080048349.01 | MsG0880046996.01 | 0.824644 | 7.219076e-54 | 6.433140e-51 |
MsG0080048349.01 | MsG0880047486.01 | 0.821955 | 3.066228e-53 | 2.531186e-50 |
MsG0080048349.01 | MsG0880047665.01 | 0.830011 | 3.732912e-55 | 3.884643e-52 |
MsG0080048349.01 | MsG0880047714.01 | 0.806410 | 8.339594e-50 | 4.523170e-47 |
MsG0080048349.01 | MsG0880047747.01 | 0.830636 | 2.626480e-55 | 2.783360e-52 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048349.01.T01 | MTR_1g098140 | 100.000 | 66 | 0 | 0 | 1 | 66 | 324 | 389 | 1.53e-40 | 136 |
MsG0080048349.01.T01 | MTR_5g007760 | 98.485 | 66 | 1 | 0 | 1 | 66 | 324 | 389 | 9.45e-40 | 134 |
MsG0080048349.01.T01 | MTR_7g113405 | 95.455 | 66 | 3 | 0 | 1 | 66 | 238 | 303 | 3.16e-39 | 130 |
MsG0080048349.01.T01 | MTR_1g097935 | 98.485 | 66 | 1 | 0 | 1 | 66 | 324 | 389 | 3.37e-39 | 132 |
MsG0080048349.01.T01 | MTR_1g097910 | 96.970 | 66 | 2 | 0 | 1 | 66 | 324 | 389 | 5.25e-39 | 132 |
MsG0080048349.01.T01 | MTR_7g016780 | 95.455 | 66 | 3 | 0 | 1 | 66 | 324 | 389 | 1.56e-38 | 130 |
MsG0080048349.01.T01 | MTR_5g007713 | 95.455 | 66 | 3 | 0 | 1 | 66 | 324 | 389 | 1.64e-38 | 130 |
MsG0080048349.01.T01 | MTR_7g016820 | 95.455 | 66 | 3 | 0 | 1 | 66 | 324 | 389 | 1.73e-38 | 130 |
MsG0080048349.01.T01 | MTR_7g016700 | 95.455 | 66 | 3 | 0 | 1 | 66 | 324 | 389 | 1.85e-38 | 130 |
MsG0080048349.01.T01 | MTR_5g007717 | 93.939 | 66 | 4 | 0 | 1 | 66 | 324 | 389 | 4.44e-38 | 129 |
MsG0080048349.01.T01 | MTR_5g007730 | 93.939 | 66 | 4 | 0 | 1 | 66 | 324 | 389 | 6.29e-38 | 129 |
MsG0080048349.01.T01 | MTR_7g016720 | 95.455 | 66 | 3 | 0 | 1 | 66 | 324 | 389 | 8.28e-38 | 129 |
MsG0080048349.01.T01 | MTR_7g016800 | 93.939 | 66 | 4 | 0 | 1 | 66 | 324 | 389 | 8.73e-38 | 129 |
MsG0080048349.01.T01 | MTR_5g007723 | 89.394 | 66 | 7 | 0 | 1 | 66 | 333 | 398 | 5.17e-36 | 124 |
MsG0080048349.01.T01 | MTR_3g083910 | 87.692 | 65 | 8 | 0 | 1 | 65 | 324 | 388 | 3.65e-35 | 122 |
MsG0080048349.01.T01 | MTR_2g058470 | 87.879 | 66 | 8 | 0 | 1 | 66 | 324 | 389 | 3.93e-35 | 122 |
MsG0080048349.01.T01 | MTR_3g083920 | 89.231 | 65 | 7 | 0 | 1 | 65 | 324 | 388 | 4.41e-35 | 122 |
MsG0080048349.01.T01 | MTR_7g084300 | 78.788 | 66 | 14 | 0 | 1 | 66 | 324 | 389 | 4.51e-32 | 114 |
MsG0080048349.01.T01 | MTR_3g086260 | 80.000 | 65 | 13 | 0 | 1 | 65 | 324 | 388 | 2.28e-30 | 109 |
MsG0080048349.01.T01 | MTR_5g007740 | 77.273 | 66 | 15 | 0 | 1 | 66 | 261 | 326 | 7.78e-30 | 107 |
MsG0080048349.01.T01 | MTR_3g088675 | 71.212 | 66 | 19 | 0 | 1 | 66 | 324 | 389 | 4.60e-29 | 105 |
MsG0080048349.01.T01 | MTR_3g088670 | 63.077 | 65 | 24 | 0 | 1 | 65 | 324 | 388 | 9.03e-23 | 89.0 |
MsG0080048349.01.T01 | MTR_5g007770 | 84.615 | 39 | 6 | 0 | 8 | 46 | 229 | 267 | 1.93e-18 | 75.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0080048349.01.T01 | AT5G13930 | 84.848 | 66 | 10 | 0 | 1 | 66 | 330 | 395 | 4.18e-35 | 122 |
Find 16 sgRNAs with CRISPR-Local
Find 20 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAGAAGTGCTCAGTGAATA+TGG | 0.317887 | contig27end:-43598 | MsG0080048349.01.T01:CDS |
ATATTCACTGAGCACTTCTC+TGG | 0.410278 | contig27end:+43600 | None:intergenic |
TTGCGCAGTGTCGCTATATG+AGG | 0.502378 | contig27end:-43430 | None:intergenic |
GCGCAAAACAACAGTTTCAA+TGG | 0.506548 | contig27end:+43447 | None:intergenic |
TTCACTGAGCACTTCTCTGG+TGG | 0.523654 | contig27end:+43603 | None:intergenic |
GGACTGAAGACCACGGGAGA+AGG | 0.524843 | contig27end:-43511 | MsG0080048349.01.T01:CDS |
CACGGGAGAAGGACTTGAGT+GGG | 0.572386 | contig27end:-43500 | MsG0080048349.01.T01:CDS |
AATGAGAAAGAAGTCCGCTC+AGG | 0.596562 | contig27end:-43536 | MsG0080048349.01.T01:CDS |
AGAAAGAAGTCCGCTCAGGA+TGG | 0.597434 | contig27end:-43532 | MsG0080048349.01.T01:CDS |
CAGGATGGACTGAAGACCAC+GGG | 0.604373 | contig27end:-43517 | MsG0080048349.01.T01:CDS |
CCACTCAAGTCCTTCTCCCG+TGG | 0.610390 | contig27end:+43501 | None:intergenic |
CCACGGGAGAAGGACTTGAG+TGG | 0.645541 | contig27end:-43501 | MsG0080048349.01.T01:CDS |
GGTCTTCAGTCCATCCTGAG+CGG | 0.678236 | contig27end:+43522 | None:intergenic |
ACAGTTTCAATGGTAAGACC+CGG | 0.678772 | contig27end:+43457 | None:intergenic |
TCAGGATGGACTGAAGACCA+CGG | 0.679433 | contig27end:-43518 | MsG0080048349.01.T01:CDS |
ACGGGAGAAGGACTTGAGTG+GGG | 0.725736 | contig27end:-43499 | MsG0080048349.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TGTTTTATTTGGGTTTGGAC+CGG | - | contig27end:43566-43585 | MsG0080048349.01.T01:CDS | 35.0% |
!!! | TTGAGTGGGGTGTTTTATTT+GGG | - | contig27end:43556-43575 | MsG0080048349.01.T01:CDS | 35.0% |
ACAGTTTCAATGGTAAGACC+CGG | + | contig27end:43588-43607 | None:intergenic | 40.0% | |
ATATTCACTGAGCACTTCTC+TGG | + | contig27end:43445-43464 | None:intergenic | 40.0% | |
GCGCAAAACAACAGTTTCAA+TGG | + | contig27end:43598-43617 | None:intergenic | 40.0% | |
!! | AGAGAAGTGCTCAGTGAATA+TGG | - | contig27end:43444-43463 | MsG0080048349.01.T01:CDS | 40.0% |
!! | CTTGAGTGGGGTGTTTTATT+TGG | - | contig27end:43555-43574 | MsG0080048349.01.T01:CDS | 40.0% |
!!! | GTTTTATTTGGGTTTGGACC+GGG | - | contig27end:43567-43586 | MsG0080048349.01.T01:CDS | 40.0% |
!!! | TGGGGTGTTTTATTTGGGTT+TGG | - | contig27end:43561-43580 | MsG0080048349.01.T01:CDS | 40.0% |
AATGAGAAAGAAGTCCGCTC+AGG | - | contig27end:43506-43525 | MsG0080048349.01.T01:CDS | 45.0% | |
AGAAAGAAGTCCGCTCAGGA+TGG | - | contig27end:43510-43529 | MsG0080048349.01.T01:CDS | 50.0% | |
TTCACTGAGCACTTCTCTGG+TGG | + | contig27end:43442-43461 | None:intergenic | 50.0% | |
!! | TCAGGATGGACTGAAGACCA+CGG | - | contig27end:43524-43543 | MsG0080048349.01.T01:CDS | 50.0% |
ACGGGAGAAGGACTTGAGTG+GGG | - | contig27end:43543-43562 | MsG0080048349.01.T01:CDS | 55.0% | |
CACGGGAGAAGGACTTGAGT+GGG | - | contig27end:43542-43561 | MsG0080048349.01.T01:CDS | 55.0% | |
GGTCTTCAGTCCATCCTGAG+CGG | + | contig27end:43523-43542 | None:intergenic | 55.0% | |
!! | CAGGATGGACTGAAGACCAC+GGG | - | contig27end:43525-43544 | MsG0080048349.01.T01:CDS | 55.0% |
CCACGGGAGAAGGACTTGAG+TGG | - | contig27end:43541-43560 | MsG0080048349.01.T01:CDS | 60.0% | |
CCACTCAAGTCCTTCTCCCG+TGG | + | contig27end:43544-43563 | None:intergenic | 60.0% | |
GGACTGAAGACCACGGGAGA+AGG | - | contig27end:43531-43550 | MsG0080048349.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
contig27end | gene | 43432 | 43632 | 43432 | ID=MsG0080048349.01;Name=MsG0080048349.01 |
contig27end | mRNA | 43432 | 43632 | 43432 | ID=MsG0080048349.01.T01;Parent=MsG0080048349.01;Name=MsG0080048349.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|66 |
contig27end | exon | 43432 | 43632 | 43432 | ID=MsG0080048349.01.T01:exon:21975;Parent=MsG0080048349.01.T01 |
contig27end | CDS | 43432 | 43632 | 43432 | ID=MsG0080048349.01.T01:cds;Parent=MsG0080048349.01.T01 |
Gene Sequence |
Protein sequence |