AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015187.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015187.01.T01 MTR_3g465430 65.278 144 20 1 159 272 520 663 3.93e-39 146
MsG0380015187.01.T01 MTR_4g014680 45.139 144 49 1 159 272 528 671 7.59e-34 131
MsG0380015187.01.T01 MTR_3g075230 87.302 63 8 0 4 66 252 314 5.30e-28 110
MsG0380015187.01.T01 MTR_7g069700 41.667 120 38 2 176 263 552 671 3.80e-24 103
MsG0380015187.01.T01 MTR_1g071400 37.415 147 60 2 158 272 478 624 2.38e-21 94.7
MsG0380015187.01.T01 MTR_1g071400 37.415 147 60 2 158 272 478 624 2.90e-21 94.4
MsG0380015187.01.T01 MTR_1g071400 37.415 147 60 2 158 272 478 624 3.54e-21 94.4
MsG0380015187.01.T01 MTR_8g035750 92.500 40 3 0 139 178 1968 2007 7.09e-17 81.6
MsG0380015187.01.T01 MTR_1g114640 84.615 39 6 0 266 304 23 61 1.40e-15 73.6
MsG0380015187.01.T01 MTR_1g114640 84.615 39 6 0 266 304 23 61 2.36e-15 74.3
MsG0380015187.01.T01 MTR_5g015750 76.923 39 9 0 266 304 23 61 1.21e-13 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015187.01.T01 AT3G51770 44.521 146 46 2 176 291 561 701 2.03e-31 124
MsG0380015187.01.T01 AT3G51770 44.521 146 46 2 176 291 569 709 2.03e-31 124
MsG0380015187.01.T01 AT5G58550 43.609 133 45 1 170 272 521 653 4.53e-29 117
MsG0380015187.01.T01 AT3G48420 89.655 58 6 0 9 66 253 310 2.34e-24 100

Find 76 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACGAGTTACTATTGTTTA+TGG 0.127348 3:+66464978 MsG0380015187.01.T01:CDS
ACTTTACATGGGAGGATTAA+AGG 0.234605 3:+66465455 MsG0380015187.01.T01:CDS
ATGTAGTTAGATAAGTTTCT+AGG 0.272462 3:+66465314 MsG0380015187.01.T01:intron
GCTAACTACGAGGATTATTC+AGG 0.301139 3:+66465018 MsG0380015187.01.T01:CDS
AGTTGATGATGTTGGTTCTT+TGG 0.313516 3:+66465565 MsG0380015187.01.T01:intron
GTTTCAGAACTTACCTCTTA+AGG 0.317681 3:-66464739 None:intergenic
ACCTGATTGTTTAGAGTTGA+AGG 0.318328 3:+66465349 MsG0380015187.01.T01:CDS
GAACGATTATATACCTTTGT+AGG 0.358428 3:-66464573 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 3:-66466011 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 3:-66465617 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 3:-66464738 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 3:+66464667 MsG0380015187.01.T01:intron
CTGACTAAGATGAACATGTT+TGG 0.399933 3:+66466167 MsG0380015187.01.T01:CDS
AAATGCATTATGCAGGTATA+CGG 0.405222 3:+66463562 MsG0380015187.01.T01:intron
GCATTGATTCTTCCCTTAAG+AGG 0.406835 3:+66464726 MsG0380015187.01.T01:CDS
GACGTTGTATTTGACTTCAT+TGG 0.414112 3:+66463608 MsG0380015187.01.T01:CDS
GATAGACTTGCAGTATTTGC+CGG 0.418086 3:-66466021 None:intergenic
GCAAAATCAGGCTCTACTAT+TGG 0.434597 3:+66464704 MsG0380015187.01.T01:CDS
AGCAATAATGCCAACAGGAT+TGG 0.436526 3:+66466946 MsG0380015187.01.T01:three_prime_UTR
AACCAACTGTTGCAGATATT+AGG 0.442398 3:-66466784 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 3:+66463309 MsG0380015187.01.T01:CDS
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 3:+66464692 MsG0380015187.01.T01:CDS
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 3:+66467019 MsG0380015187.01.T01:three_prime_UTR
GTCTATCGCAAAATCAAAGA+AGG 0.465270 3:+66466037 MsG0380015187.01.T01:CDS
GCCTTCAACTCTAAACAATC+AGG 0.470343 3:-66465350 None:intergenic
TCCTGAGGAGAGGTTTGATC+TGG 0.473131 3:+66463637 MsG0380015187.01.T01:CDS
GTGGTCGAGGACAGCGCTAT+AGG 0.473850 3:+66463285 MsG0380015187.01.T01:CDS
GTTTCAGCAATAATGCCAAC+AGG 0.481394 3:+66466941 MsG0380015187.01.T01:three_prime_UTR
ATGCGGGAGCTTCAGTGCAC+CGG 0.482772 3:+66462821 MsG0380015187.01.T01:CDS
TGAACTAATGTTATGTTCAA+AGG 0.485312 3:+66467006 MsG0380015187.01.T01:three_prime_UTR
GCTAACTACATAACTTTACA+TGG 0.496572 3:+66465443 MsG0380015187.01.T01:CDS
AGTTACTATTGTTTATGGAA+TGG 0.503180 3:+66464983 MsG0380015187.01.T01:CDS
CTTCATCCCAGCTACTTTAG+CGG 0.503426 3:-66463316 None:intergenic
GCCAGATCAAACCTCTCCTC+AGG 0.506138 3:-66463638 None:intergenic
CAGATGCTAGAGAATGAGCC+TGG 0.507226 3:+66465599 MsG0380015187.01.T01:CDS
AGATACTTGCCTGATTCTAC+CGG 0.514786 3:+66466002 MsG0380015187.01.T01:CDS
AACGATTATATACCTTTGTA+GGG 0.515993 3:-66464572 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3:+66463272 MsG0380015187.01.T01:intron
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 3:-66465435 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 3:+66466210 MsG0380015187.01.T01:three_prime_UTR
CTGAAAGCAGGAACGAAAAG+AGG 0.532794 3:-66464936 None:intergenic
ATTGTTTAGAGTTGAAGGCT+TGG 0.537047 3:+66465354 MsG0380015187.01.T01:CDS
CTATTGTTTATGGAATGGCT+AGG 0.538463 3:+66464988 MsG0380015187.01.T01:CDS
TCCTGCTTTCAGCTATGAGA+GGG 0.547312 3:+66464947 MsG0380015187.01.T01:CDS
TTCCTGCTTTCAGCTATGAG+AGG 0.550089 3:+66464946 MsG0380015187.01.T01:CDS
GTCTGTCGCTACTACTCTTG+AGG 0.550215 3:+66465642 MsG0380015187.01.T01:CDS
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 3:+66463627 MsG0380015187.01.T01:CDS
TCCCTCTCATAGCTGAAAGC+AGG 0.553657 3:-66464948 None:intergenic
TATTAGAGCTTTGTTAACCA+TGG 0.554431 3:+66465418 MsG0380015187.01.T01:CDS
TGCGGGAGCTTCAGTGCACC+GGG 0.556922 3:+66462822 MsG0380015187.01.T01:CDS
GGCCTAATATCTGCAACAGT+TGG 0.557391 3:+66466782 MsG0380015187.01.T01:three_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 3:-66467048 None:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 3:+66466817 MsG0380015187.01.T01:three_prime_UTR
CTAACTACGAGGATTATTCA+GGG 0.568404 3:+66465019 MsG0380015187.01.T01:CDS
TTATGCAGGTATACGGCAGA+TGG 0.570206 3:+66463569 MsG0380015187.01.T01:intron
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3:+66463337 MsG0380015187.01.T01:CDS
TGGTATTCAGTTGATGATGT+TGG 0.588095 3:+66465557 MsG0380015187.01.T01:intron
GCGACAGACGAAACTCTAGC+AGG 0.588210 3:-66465628 None:intergenic
GAACAGATTAAACTGTCAGA+AGG 0.597977 3:+66465971 MsG0380015187.01.T01:intron
TCTTATTTACAGATGTGTCG+TGG 0.600555 3:+66463266 MsG0380015187.01.T01:intron
TGTTGCAAAATGCCCTACAA+AGG 0.603887 3:+66464560 MsG0380015187.01.T01:CDS
ACTTGCAGTTCATATTGGCA+TGG 0.614305 3:+66464672 MsG0380015187.01.T01:intron
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 3:+66463310 MsG0380015187.01.T01:CDS
TAGAGCTTTGTTAACCATGG+AGG 0.620374 3:+66465421 MsG0380015187.01.T01:CDS
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3:+66463622 MsG0380015187.01.T01:CDS
TCTATCGCAAAATCAAAGAA+GGG 0.624713 3:+66466038 MsG0380015187.01.T01:CDS
AGATCAAACCTCTCCTCAGG+AGG 0.625024 3:-66463635 None:intergenic
ACTACATAACTTTACATGGG+AGG 0.625525 3:+66465447 MsG0380015187.01.T01:CDS
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3:+66463336 MsG0380015187.01.T01:CDS
AATGATTGTGCCAATCCTGT+TGG 0.632692 3:-66466956 None:intergenic
CTAACTACATAACTTTACAT+GGG 0.671104 3:+66465444 MsG0380015187.01.T01:CDS
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 3:-66464535 None:intergenic
TAACTACGAGGATTATTCAG+GGG 0.696814 3:+66465020 MsG0380015187.01.T01:CDS
CAGGGGATAAGAATTATCAG+AGG 0.706903 3:+66465037 MsG0380015187.01.T01:CDS
CATCCACCAATACACATGCG+TGG 0.710635 3:-66466820 None:intergenic
AGGTTGTGCAGCTAACTACG+AGG 0.761300 3:+66465008 MsG0380015187.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTATTGATCA+TGG + Chr3:66466110-66466129 MsG0380015187.01.T01:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG + Chr3:66464313-66464332 MsG0380015187.01.T01:intron 10.0%
!! ATATTTATACGAAAATGAAA+GGG - Chr3:66465249-66465268 None:intergenic 15.0%
!! ATTCATTAAAACTATCAAAA+AGG - Chr3:66462852-66462871 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG - Chr3:66465250-66465269 None:intergenic 15.0%
!! TCAACTATTTAACATATAAA+TGG - Chr3:66464364-66464383 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG + Chr3:66464866-66464885 MsG0380015187.01.T01:intron 15.0%
!! TGATATTATTTACATGAATA+AGG - Chr3:66466343-66466362 None:intergenic 15.0%
!! TTCATTAAAACTATCAAAAA+GGG - Chr3:66462851-66462870 None:intergenic 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG + Chr3:66464025-66464044 MsG0380015187.01.T01:intron 15.0%
!!! TGAAATGCATATTATTATTT+TGG + Chr3:66466692-66466711 MsG0380015187.01.T01:intron 15.0%
!! AATTTCCAAATTGGTTAATT+TGG + Chr3:66464875-66464894 MsG0380015187.01.T01:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG - Chr3:66464424-66464443 None:intergenic 20.0%
!! GAAAAGATCAATGTTTATAT+TGG + Chr3:66463811-66463830 MsG0380015187.01.T01:intron 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG - Chr3:66465706-66465725 None:intergenic 20.0%
!! TATAACCAAATTAACCAATT+TGG - Chr3:66464883-66464902 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG + Chr3:66466414-66466433 MsG0380015187.01.T01:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG + Chr3:66464258-66464277 MsG0380015187.01.T01:intron 20.0%
!!! AATAAGTTGCTCTAAAATTT+TGG - Chr3:66463089-66463108 None:intergenic 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG - Chr3:66466411-66466430 None:intergenic 20.0%
!!! CATTTTATTATAATTCTTCC+TGG + Chr3:66464422-66464441 MsG0380015187.01.T01:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG - Chr3:66466410-66466429 None:intergenic 20.0%
!!! GCAACTTTATGTTTTTTTAT+AGG + Chr3:66463385-66463404 MsG0380015187.01.T01:intron 20.0%
!!! GTATATTTCTATTTACTGAA+TGG + Chr3:66463359-66463378 MsG0380015187.01.T01:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG + Chr3:66463962-66463981 MsG0380015187.01.T01:intron 20.0%
!!! TGATAGTTTTAATGAATTGA+AGG + Chr3:66462855-66462874 MsG0380015187.01.T01:intron 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG + Chr3:66463961-66463980 MsG0380015187.01.T01:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + Chr3:66466372-66466391 MsG0380015187.01.T01:intron 20.0%
! AACCTATCTGATACTTTATT+TGG + Chr3:66463155-66463174 MsG0380015187.01.T01:intron 25.0%
! AACGATTATATACCTTTGTA+GGG - Chr3:66464575-66464594 None:intergenic 25.0%
! AATTTAACAGTTGCTTATTC+TGG + Chr3:66464109-66464128 MsG0380015187.01.T01:intron 25.0%
! ACAAGATGAAAAAATTAACG+CGG - Chr3:66466746-66466765 None:intergenic 25.0%
! AGATTTATCCATCCATTATA+AGG - Chr3:66466505-66466524 None:intergenic 25.0%
! AGTATCAATGCTACATATAT+AGG - Chr3:66465725-66465744 None:intergenic 25.0%
! AGTTACTATTGTTTATGGAA+TGG + Chr3:66464983-66465002 MsG0380015187.01.T01:CDS 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG + Chr3:66465314-66465333 MsG0380015187.01.T01:intron 25.0%
! ATTTAACAGTTGCTTATTCT+GGG + Chr3:66464110-66464129 MsG0380015187.01.T01:intron 25.0%
! CTAACTACATAACTTTACAT+GGG + Chr3:66465444-66465463 MsG0380015187.01.T01:CDS 25.0%
! CTTTGATATATTTCAAGACA+TGG + Chr3:66466450-66466469 MsG0380015187.01.T01:intron 25.0%
! GAATTGAAGGATATAGATTA+TGG + Chr3:66462868-66462887 MsG0380015187.01.T01:intron 25.0%
! TGAACTAATGTTATGTTCAA+AGG + Chr3:66467006-66467025 MsG0380015187.01.T01:three_prime_UTR 25.0%
! TGGATCATTGTTTCATAATT+TGG + Chr3:66464822-66464841 MsG0380015187.01.T01:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG + Chr3:66464978-66464997 MsG0380015187.01.T01:CDS 25.0%
! TTCGTATAAATATAGAGCAT+TGG + Chr3:66465256-66465275 MsG0380015187.01.T01:intron 25.0%
! TTGATGCTAATTAATGTTGT+TGG + Chr3:66463951-66463970 MsG0380015187.01.T01:intron 25.0%
!! AACATTGATCTTTTCATCAT+TGG - Chr3:66463806-66463825 None:intergenic 25.0%
!! ATCCAAATAAAGTATCAGAT+AGG - Chr3:66463160-66463179 None:intergenic 25.0%
!! CATGGTCTTTTTATATTTTC+AGG + Chr3:66466128-66466147 MsG0380015187.01.T01:intron 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + Chr3:66465199-66465218 MsG0380015187.01.T01:intron 25.0%
!!! AATTTTGTTTTTGAACTGCA+TGG + Chr3:66463209-66463228 MsG0380015187.01.T01:intron 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG + Chr3:66464492-66464511 MsG0380015187.01.T01:intron 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG + Chr3:66467019-66467038 MsG0380015187.01.T01:three_prime_UTR 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG - Chr3:66463796-66463815 None:intergenic 25.0%
AAATGCATTATGCAGGTATA+CGG + Chr3:66463562-66463581 MsG0380015187.01.T01:intron 30.0%
AAGTGTATAGTAACAAAGAG+CGG + Chr3:66463336-66463355 MsG0380015187.01.T01:CDS 30.0%
AATGATACATGATCGAACTA+TGG - Chr3:66466719-66466738 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG - Chr3:66466553-66466572 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG + Chr3:66465140-66465159 MsG0380015187.01.T01:intron 30.0%
ATGCCATAAAATTCTACTGT+TGG - Chr3:66463057-66463076 None:intergenic 30.0%
ATGTTCTTGATACCATATGA+AGG - Chr3:66466387-66466406 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG - Chr3:66465066-66465085 None:intergenic 30.0%
ATTTGAGGAGAAGCAAATAA+AGG + Chr3:66465283-66465302 MsG0380015187.01.T01:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG + Chr3:66465910-66465929 MsG0380015187.01.T01:intron 30.0%
CTATATGCTCATGCTATATA+AGG - Chr3:66466647-66466666 None:intergenic 30.0%
GAACGATTATATACCTTTGT+AGG - Chr3:66464576-66464595 None:intergenic 30.0%
GATACCAACATTAAAAACAC+AGG - Chr3:66466881-66466900 None:intergenic 30.0%
GCTAACTACATAACTTTACA+TGG + Chr3:66465443-66465462 MsG0380015187.01.T01:CDS 30.0%
GCTGCATAATTCTACTTATA+AGG - Chr3:66466560-66466579 None:intergenic 30.0%
TAATCTCAAATGCATTATGC+AGG + Chr3:66463555-66463574 MsG0380015187.01.T01:intron 30.0%
TAGAATTCAGAAGAAGAATC+AGG + Chr3:66465505-66465524 MsG0380015187.01.T01:intron 30.0%
TCTATCGCAAAATCAAAGAA+GGG + Chr3:66466038-66466057 MsG0380015187.01.T01:CDS 30.0%
TGATAGCTTATGAAAGTTAC+TGG - Chr3:66464849-66464868 None:intergenic 30.0%
TGTTTGGAAAAAAAAGCTGA+TGG + Chr3:66466183-66466202 MsG0380015187.01.T01:CDS 30.0%
TTAGATGGACAATGAATTTG+AGG + Chr3:66464040-66464059 MsG0380015187.01.T01:intron 30.0%
TTGCTTCTACAGACAAAAAT+GGG - Chr3:66465065-66465084 None:intergenic 30.0%
TTTACTATGAGAGAGAGAAA+TGG + Chr3:66464179-66464198 MsG0380015187.01.T01:intron 30.0%
TTTCAGAACTTACCTCTTAA+GGG - Chr3:66464741-66464760 None:intergenic 30.0%
! AAATTCTACTGTTGGTGAAT+AGG - Chr3:66463049-66463068 None:intergenic 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG + Chr3:66463416-66463435 MsG0380015187.01.T01:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG + Chr3:66463999-66464018 MsG0380015187.01.T01:intron 30.0%
! TCACCAACAGTAGAATTTTA+TGG + Chr3:66463051-66463070 MsG0380015187.01.T01:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG - Chr3:66463676-66463695 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG + Chr3:66463998-66464017 MsG0380015187.01.T01:intron 30.0%
!! CAAATCTCTGTTAGTTTGTA+AGG + Chr3:66462891-66462910 MsG0380015187.01.T01:intron 30.0%
!! TACACCTGTGTTTTTAATGT+TGG + Chr3:66466874-66466893 MsG0380015187.01.T01:three_prime_UTR 30.0%
!! TAGAGCATTGGAAAAATTTG+AGG + Chr3:66465268-66465287 MsG0380015187.01.T01:intron 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG + Chr3:66465418-66465437 MsG0380015187.01.T01:CDS 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG - Chr3:66463797-66463816 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG + Chr3:66466757-66466776 MsG0380015187.01.T01:intron 30.0%
AAAAAACCACGCATGTGTAT+TGG + Chr3:66466814-66466833 MsG0380015187.01.T01:three_prime_UTR 35.0%
AACCAACTGTTGCAGATATT+AGG - Chr3:66466787-66466806 None:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG + Chr3:66464197-66464216 MsG0380015187.01.T01:intron 35.0%
ACAAGCAACTTCTGATATGA+TGG + Chr3:66464067-66464086 MsG0380015187.01.T01:intron 35.0%
ACAATGATCCATCAGTAAGT+AGG - Chr3:66464813-66464832 None:intergenic 35.0%
ACTACATAACTTTACATGGG+AGG + Chr3:66465447-66465466 MsG0380015187.01.T01:CDS 35.0%
ACTTTACATGGGAGGATTAA+AGG + Chr3:66465455-66465474 MsG0380015187.01.T01:CDS 35.0%
AGTAAACACCTTCCAGATAA+AGG - Chr3:66464165-66464184 None:intergenic 35.0%
AGTGTATAGTAACAAAGAGC+GGG + Chr3:66463337-66463356 MsG0380015187.01.T01:CDS 35.0%
ATGAGCATATAGATCAGTAG+TGG + Chr3:66466655-66466674 MsG0380015187.01.T01:intron 35.0%
ATGGACAATGAATTTGAGGA+TGG + Chr3:66464044-66464063 MsG0380015187.01.T01:intron 35.0%
ATTGCACTTGCAGTTCATAT+TGG + Chr3:66464667-66464686 MsG0380015187.01.T01:intron 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + Chr3:66464154-66464173 MsG0380015187.01.T01:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG + Chr3:66464611-66464630 MsG0380015187.01.T01:intron 35.0%
CACTCCATACACTTCAAATA+GGG - Chr3:66463117-66463136 None:intergenic 35.0%
CTAACTACGAGGATTATTCA+GGG + Chr3:66465019-66465038 MsG0380015187.01.T01:CDS 35.0%
CTATTGTTTATGGAATGGCT+AGG + Chr3:66464988-66465007 MsG0380015187.01.T01:CDS 35.0%
CTGACTAAGATGAACATGTT+TGG + Chr3:66466167-66466186 MsG0380015187.01.T01:CDS 35.0%
GAAATGCATAACAGAAACTG+TGG + Chr3:66466472-66466491 MsG0380015187.01.T01:intron 35.0%
GAACAGATTAAACTGTCAGA+AGG + Chr3:66465971-66465990 MsG0380015187.01.T01:intron 35.0%
GATATTCCATTTCCGATCAT+TGG - Chr3:66464620-66464639 None:intergenic 35.0%
GGATGCAGTTATAACAACAA+TGG + Chr3:66465537-66465556 MsG0380015187.01.T01:intron 35.0%
GGTAAGAGTGAAAAGAAATG+AGG - Chr3:66463775-66463794 None:intergenic 35.0%
GTCTATCGCAAAATCAAAGA+AGG + Chr3:66466037-66466056 MsG0380015187.01.T01:CDS 35.0%
GTTTCAGAACTTACCTCTTA+AGG - Chr3:66464742-66464761 None:intergenic 35.0%
TAACTACGAGGATTATTCAG+GGG + Chr3:66465020-66465039 MsG0380015187.01.T01:CDS 35.0%
TCTTCCTGGATCTTCATTTA+TGG + Chr3:66464436-66464455 MsG0380015187.01.T01:intron 35.0%
TGCAATATGGGAAGAGAAAA+AGG + Chr3:66465188-66465207 MsG0380015187.01.T01:intron 35.0%
TGCTTCTACAGACAAAAATG+GGG - Chr3:66465064-66465083 None:intergenic 35.0%
TGTGATTTCAGTCCTTTATC+TGG + Chr3:66464150-66464169 MsG0380015187.01.T01:intron 35.0%
TTAGTTGTGCTGAGTATTCT+AGG + Chr3:66462997-66463016 MsG0380015187.01.T01:intron 35.0%
TTCACCTTTGCTTAGTTTCA+AGG + Chr3:66466264-66466283 MsG0380015187.01.T01:intron 35.0%
! ACCTGATTGTTTAGAGTTGA+AGG + Chr3:66465349-66465368 MsG0380015187.01.T01:CDS 35.0%
! AGTGGTTCAATTGATTCACA+TGG + Chr3:66464215-66464234 MsG0380015187.01.T01:intron 35.0%
! ATTGTTTAGAGTTGAAGGCT+TGG + Chr3:66465354-66465373 MsG0380015187.01.T01:CDS 35.0%
! CTTGTCATTTGTCCAATGAT+CGG + Chr3:66464605-66464624 MsG0380015187.01.T01:intron 35.0%
! GACGTTGTATTTGACTTCAT+TGG + Chr3:66463608-66463627 MsG0380015187.01.T01:CDS 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG - Chr3:66463449-66463468 None:intergenic 35.0%
! TCAACCCTATTTGAAGTGTA+TGG + Chr3:66463110-66463129 MsG0380015187.01.T01:intron 35.0%
! TCTTATTTACAGATGTGTCG+TGG + Chr3:66463266-66463285 MsG0380015187.01.T01:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - Chr3:66463747-66463766 None:intergenic 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG + Chr3:66465565-66465584 MsG0380015187.01.T01:intron 35.0%
!! ATCTCTGTTAGTTTGTAAGG+TGG + Chr3:66462894-66462913 MsG0380015187.01.T01:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG + Chr3:66465557-66465576 MsG0380015187.01.T01:intron 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG + Chr3:66466761-66466780 MsG0380015187.01.T01:intron 35.0%
AACTATCAAAAAGGGCAACC+CGG - Chr3:66462843-66462862 None:intergenic 40.0%
AATGATTGTGCCAATCCTGT+TGG - Chr3:66466959-66466978 None:intergenic 40.0%
ACTCTTGAGGTAAGCATCTT+CGG + Chr3:66465655-66465674 MsG0380015187.01.T01:intron 40.0%
ACTTGCAGTTCATATTGGCA+TGG + Chr3:66464672-66464691 MsG0380015187.01.T01:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG + Chr3:66466002-66466021 MsG0380015187.01.T01:CDS 40.0%
AGCAATAATGCCAACAGGAT+TGG + Chr3:66466946-66466965 MsG0380015187.01.T01:three_prime_UTR 40.0%
CAGGGGATAAGAATTATCAG+AGG + Chr3:66465037-66465056 MsG0380015187.01.T01:CDS 40.0%
CATGCCTTGAAACTAAGCAA+AGG - Chr3:66466271-66466290 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG + Chr3:66464183-66464202 MsG0380015187.01.T01:intron 40.0%
GAGGATTAAAGGTAAGTGCT+TGG + Chr3:66465466-66465485 MsG0380015187.01.T01:intron 40.0%
GATAGACTTGCAGTATTTGC+CGG - Chr3:66466024-66466043 None:intergenic 40.0%
GCAAAATCAGGCTCTACTAT+TGG + Chr3:66464704-66464723 MsG0380015187.01.T01:CDS 40.0%
GCACTCCATACACTTCAAAT+AGG - Chr3:66463118-66463137 None:intergenic 40.0%
GCCTTCAACTCTAAACAATC+AGG - Chr3:66465353-66465372 None:intergenic 40.0%
GCTAACTACGAGGATTATTC+AGG + Chr3:66465018-66465037 MsG0380015187.01.T01:CDS 40.0%
GTAATACAGCTCTTTGCCTA+AGG + Chr3:66466534-66466553 MsG0380015187.01.T01:intron 40.0%
GTTGCCATAAATGAAGATCC+AGG - Chr3:66464443-66464462 None:intergenic 40.0%
GTTTCAGCAATAATGCCAAC+AGG + Chr3:66466941-66466960 MsG0380015187.01.T01:three_prime_UTR 40.0%
TAGCAAACTGTGAAGTGATG+AGG + Chr3:66463698-66463717 MsG0380015187.01.T01:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG - Chr3:66463908-66463927 None:intergenic 40.0%
TCGAGTATAAACCAGTTGGT+TGG + Chr3:66465144-66465163 MsG0380015187.01.T01:intron 40.0%
TCTTGATACATCCAACCAAC+TGG - Chr3:66465158-66465177 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG + Chr3:66464560-66464579 MsG0380015187.01.T01:CDS 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG - Chr3:66464538-66464557 None:intergenic 40.0%
! AGGTTTGATCTGGCATTTTG+TGG + Chr3:66463647-66463666 MsG0380015187.01.T01:CDS 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG - Chr3:66465438-66465457 None:intergenic 40.0%
! GAGAGCATGGTATGTAATCT+TGG + Chr3:66466223-66466242 MsG0380015187.01.T01:intron 40.0%
!! AAAGCTGATGGTTTTGCACA+TGG + Chr3:66466195-66466214 MsG0380015187.01.T01:exon 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG + Chr3:66465516-66465535 MsG0380015187.01.T01:intron 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG + Chr3:66465175-66465194 MsG0380015187.01.T01:intron 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG + Chr3:66465176-66465195 MsG0380015187.01.T01:intron 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG + Chr3:66464726-66464745 MsG0380015187.01.T01:CDS 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG + Chr3:66465421-66465440 MsG0380015187.01.T01:CDS 40.0%
AAACCACGCATGTGTATTGG+TGG + Chr3:66466817-66466836 MsG0380015187.01.T01:three_prime_UTR 45.0%
AGAGATCTCGGATTTGATCC+GGG - Chr3:66463437-66463456 None:intergenic 45.0%
CAGAGAAGCTAACTCATTCG+TGG - Chr3:66463921-66463940 None:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG - Chr3:66463438-66463457 None:intergenic 45.0%
CAGTATTTGCCGGTAGAATC+AGG - Chr3:66466014-66466033 None:intergenic 45.0%
CTGAAAGCAGGAACGAAAAG+AGG - Chr3:66464939-66464958 None:intergenic 45.0%
GGCCTAATATCTGCAACAGT+TGG + Chr3:66466782-66466801 MsG0380015187.01.T01:three_prime_UTR 45.0%
TCCTGCTTTCAGCTATGAGA+GGG + Chr3:66464947-66464966 MsG0380015187.01.T01:CDS 45.0%
TGATGGCAAGCAGTCAACAA+AGG + Chr3:66464084-66464103 MsG0380015187.01.T01:intron 45.0%
TGCAGAAGCCTACTTACTGA+TGG + Chr3:66464802-66464821 MsG0380015187.01.T01:intron 45.0%
TGGCAGCAAAGTGCAAAATC+AGG + Chr3:66464692-66464711 MsG0380015187.01.T01:CDS 45.0%
TGTGGCGCGAATCCTTATAA+TGG + Chr3:66466490-66466509 MsG0380015187.01.T01:intron 45.0%
TTAGAAGTCCCACACTACGA+AGG - Chr3:66463504-66463523 None:intergenic 45.0%
TTATGCAGGTATACGGCAGA+TGG + Chr3:66463569-66463588 MsG0380015187.01.T01:intron 45.0%
TTCCTGCTTTCAGCTATGAG+AGG + Chr3:66464946-66464965 MsG0380015187.01.T01:CDS 45.0%
! CTTCATCCCAGCTACTTTAG+CGG - Chr3:66463319-66463338 None:intergenic 45.0%
! GCGCGAATCCTTATAATGGA+TGG + Chr3:66466494-66466513 MsG0380015187.01.T01:intron 45.0%
AACTCTAGCAGGCTCTTTCC+AGG - Chr3:66465620-66465639 None:intergenic 50.0%
AGATCAAACCTCTCCTCAGG+AGG - Chr3:66463638-66463657 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG + Chr3:66465008-66465027 MsG0380015187.01.T01:CDS 50.0%
CAGATGCTAGAGAATGAGCC+TGG + Chr3:66465599-66465618 MsG0380015187.01.T01:CDS 50.0%
CATCCACCAATACACATGCG+TGG - Chr3:66466823-66466842 None:intergenic 50.0%
GGTGAGCTAAGGGACATTGA+AGG - Chr3:66463471-66463490 None:intergenic 50.0%
GTCGACATGATTCTCACACG+TGG + Chr3:66465774-66465793 MsG0380015187.01.T01:intron 50.0%
GTCTGTCGCTACTACTCTTG+AGG + Chr3:66465642-66465661 MsG0380015187.01.T01:CDS 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG + Chr3:66463310-66463329 MsG0380015187.01.T01:CDS 50.0%
TCCCTCTCATAGCTGAAAGC+AGG - Chr3:66464951-66464970 None:intergenic 50.0%
TCCTGAGGAGAGGTTTGATC+TGG + Chr3:66463637-66463656 MsG0380015187.01.T01:CDS 50.0%
TTACAGATGTGTCGTGGTCG+AGG + Chr3:66463272-66463291 MsG0380015187.01.T01:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + Chr3:66463622-66463641 MsG0380015187.01.T01:CDS 50.0%
CTAGCAGCCGCTAAAGTAGC+TGG + Chr3:66463309-66463328 MsG0380015187.01.T01:CDS 55.0%
GCCAGATCAAACCTCTCCTC+AGG - Chr3:66463641-66463660 None:intergenic 55.0%
GCGACAGACGAAACTCTAGC+AGG - Chr3:66465631-66465650 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG + Chr3:66463627-66463646 MsG0380015187.01.T01:CDS 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG - Chr3:66463481-66463500 None:intergenic 55.0%
ACCGAGCTGCCTTCGTAGTG+TGG + Chr3:66463492-66463511 MsG0380015187.01.T01:intron 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG + Chr3:66462821-66462840 MsG0380015187.01.T01:CDS 60.0%
CACTACGAAGGCAGCTCGGT+TGG - Chr3:66463492-66463511 None:intergenic 60.0%
CCCACACTACGAAGGCAGCT+CGG - Chr3:66463496-66463515 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG + Chr3:66463493-66463512 MsG0380015187.01.T01:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG + Chr3:66466210-66466229 MsG0380015187.01.T01:three_prime_UTR 60.0%
GTGCACTGAAGCTCCCGCAT+AGG - Chr3:66462821-66462840 None:intergenic 60.0%
GTGGTCGAGGACAGCGCTAT+AGG + Chr3:66463285-66463304 MsG0380015187.01.T01:CDS 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG - Chr3:66463482-66463501 None:intergenic 60.0%
TGCGGGAGCTTCAGTGCACC+GGG + Chr3:66462822-66462841 MsG0380015187.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 66462821 66467060 66462821 ID=MsG0380015187.01;Name=MsG0380015187.01
Chr3 mRNA 66462821 66467060 66462821 ID=MsG0380015187.01.T01;Parent=MsG0380015187.01;Name=MsG0380015187.01.T01;_AED=0.49;_eAED=0.53;_QI=0|0.4|0.45|1|0.8|0.72|11|317|305
Chr3 exon 66462821 66462843 66462821 ID=MsG0380015187.01.T01:exon:22983;Parent=MsG0380015187.01.T01
Chr3 exon 66463278 66463358 66463278 ID=MsG0380015187.01.T01:exon:22984;Parent=MsG0380015187.01.T01
Chr3 exon 66463577 66463668 66463577 ID=MsG0380015187.01.T01:exon:22985;Parent=MsG0380015187.01.T01
Chr3 exon 66464514 66464581 66464514 ID=MsG0380015187.01.T01:exon:22986;Parent=MsG0380015187.01.T01
Chr3 exon 66464680 66464747 66464680 ID=MsG0380015187.01.T01:exon:22987;Parent=MsG0380015187.01.T01
Chr3 exon 66464924 66465119 66464924 ID=MsG0380015187.01.T01:exon:22988;Parent=MsG0380015187.01.T01
Chr3 exon 66465320 66465476 66465320 ID=MsG0380015187.01.T01:exon:22989;Parent=MsG0380015187.01.T01
Chr3 exon 66465567 66465663 66465567 ID=MsG0380015187.01.T01:exon:22990;Parent=MsG0380015187.01.T01
Chr3 exon 66465977 66466059 66465977 ID=MsG0380015187.01.T01:exon:22991;Parent=MsG0380015187.01.T01
Chr3 exon 66466150 66466231 66466150 ID=MsG0380015187.01.T01:exon:22992;Parent=MsG0380015187.01.T01
Chr3 exon 66466773 66467060 66466773 ID=MsG0380015187.01.T01:exon:22993;Parent=MsG0380015187.01.T01
Chr3 CDS 66462821 66462843 66462821 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66463278 66463358 66463278 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66463577 66463668 66463577 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66464514 66464581 66464514 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66464680 66464747 66464680 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66464924 66465119 66464924 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66465320 66465476 66465320 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66465567 66465663 66465567 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66465977 66466059 66465977 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 CDS 66466150 66466202 66466150 ID=MsG0380015187.01.T01:cds;Parent=MsG0380015187.01.T01
Chr3 three_prime_UTR 66466203 66466231 66466203 ID=MsG0380015187.01.T01:three_prime_utr;Parent=MsG0380015187.01.T01
Chr3 three_prime_UTR 66466773 66467060 66466773 ID=MsG0380015187.01.T01:three_prime_utr;Parent=MsG0380015187.01.T01
Gene Sequence

>MsG0380015187.01.T01

ATGCGGGAGCTTCAGTGCACCGGATGTGTCGTGGTCGAGGACAGCGCTATAGGTCTAGCAGCCGCTAAAGTAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACGGCAGATGGAGATTTCTTAAATGCAGACGTTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGGTTTGATCTGGCATTTTGTGGTGTGACATCAAACACAGATGCCGCACAGCTTGCAGAAACATTTGTTGTTGCAAAATGCCCTACAAAGTTCATATTGGCATGGCAGCAAAGTGCAAAATCAGGCTCTACTATTGGCATTGATTCTTCCCTTAAGAGTTCATCTATTTTCCTCTTTTCGTTCCTGCTTTCAGCTATGAGAGGGAGTGAAGATTACGAGTTACTATTGTTTATGGAATGGCTAGGTTGTGCAGCTAACTACGAGGATTATTCAGGGGATAAGAATTATCAGAGGACCCCATTTTTGTCTGTAGAAGCAATCTCAATAGCGACTATTAATAAAGAGAAAAAAAAATTAGATAAGTTTCTAGGATTTAAGCTTTCACCTGATTGTTTAGAGTTGAAGGCTTGGTTGTATATTGCATTAGATGATTATGATAGTGCTATAAGAGATATTAGAGCTTTGTTAACCATGGAGGCTAACTACATAACTTTACATGGGAGGATTAAAGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTGGAAAGAGCCTGCTAGAGTTTCGTCTGTCGCTACTACTCTTGAGATTAAACTGTCAGAAGGCTGCAAAGAGATACTTGCCTGATTCTACCGGCAAATACTGCAAGTCTATCGCAAAATCAAAGAAGGGTAAATTAAATTCAGTTCTGACTAAGATGAACATGTTTGGAAAAAAAAGCTGA
Protein sequence

>MsG0380015187.01.T01

MRELQCTGCVVVEDSAIGLAAAKVAGMKCIVTKSGYTADGDFLNADVVFDFIGDPPEERFDLAFCGVTSNTDAAQLAETFVVAKCPTKFILAWQQSAKSGSTIGIDSSLKSSSIFLFSFLLSAMRGSEDYELLLFMEWLGCAANYEDYSGDKNYQRTPFLSVEAISIATINKEKKKLDKFLGFKLSPDCLELKAWLYIALDDYDSAIRDIRALLTMEANYITLHGRIKVDDVGSLAIIHQMLENEPGKSLLEFRLSLLLLRLNCQKAAKRYLPDSTGKYCKSIAKSKKGKLNSVLTKMNMFGKKS*