AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017189.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017189.01.T01 MTR_3g075230 94.915 59 3 0 8 66 256 314 4.27e-30 113
MsG0380017189.01.T01 MTR_1g114640 87.179 39 5 0 170 208 23 61 5.52e-17 75.5
MsG0380017189.01.T01 MTR_1g114640 87.179 39 5 0 170 208 23 61 9.32e-17 75.9
MsG0380017189.01.T01 MTR_4g014680 43.434 99 24 2 110 176 573 671 1.96e-16 77.8
MsG0380017189.01.T01 MTR_3g465430 63.265 98 4 2 111 176 566 663 1.35e-15 75.1
MsG0380017189.01.T01 MTR_5g015750 74.359 39 10 0 170 208 23 61 1.62e-13 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017189.01.T01 AT3G48420 88.136 59 7 0 8 66 252 310 6.94e-26 102
MsG0380017189.01.T01 AT3G51770 38.095 126 40 4 102 195 582 701 8.49e-16 75.9
MsG0380017189.01.T01 AT3G51770 38.095 126 40 4 102 195 590 709 9.09e-16 75.9

Find 58 sgRNAs with CRISPR-Local

Find 192 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTACATGGGAGGATTAA+AGG 0.234605 3:+93150916 MsG0380017189.01.T01:CDS
AGTTGATGATGTTGGTTCTT+TGG 0.313516 3:+93151026 MsG0380017189.01.T01:intron
GTTTCAGAACTTACCTCTTA+AGG 0.317681 3:-93150202 None:intergenic
TCCTGAGGAGAGGTTTGATT+TGG 0.342744 3:+93149101 MsG0380017189.01.T01:CDS
GAACGATTATATACCTTTGT+AGG 0.358428 3:-93150036 None:intergenic
CAGTATTTGCCGGTAGAATC+AGG 0.358742 3:-93151466 None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG 0.361101 3:-93151072 None:intergenic
TTTCAGAACTTACCTCTTAA+GGG 0.361709 3:-93150201 None:intergenic
ATTGCACTTGCAGTTCATAT+TGG 0.363079 3:+93150130 MsG0380017189.01.T01:intron
CTGACTAAGATGAACATGTT+TGG 0.399933 3:+93151622 MsG0380017189.01.T01:CDS
AAATGCATTATGCAGGTATA+CGG 0.405222 3:+93149026 MsG0380017189.01.T01:intron
GCATTGATTCTTCCCTTAAG+AGG 0.406835 3:+93150189 MsG0380017189.01.T01:CDS
GATAGACTTGCAGTATTTGC+CGG 0.410071 3:-93151476 None:intergenic
GACGTTGTATTTGACTTCAT+TGG 0.414112 3:+93149072 MsG0380017189.01.T01:CDS
GCAAAATCAGGCTCTACTAT+TGG 0.434597 3:+93150167 MsG0380017189.01.T01:CDS
AGCAATAATGCCAACAGGAT+TGG 0.436526 3:+93152401 MsG0380017189.01.T01:three_prime_UTR
AACCAACTGTTGCAGATATT+AGG 0.442398 3:-93152239 None:intergenic
CTAGCAGCCGCTAAAGTAGC+TGG 0.453585 3:+93148774 MsG0380017189.01.T01:CDS
TGGCAGCAAAGTGCAAAATC+AGG 0.459814 3:+93150155 MsG0380017189.01.T01:CDS
TGTTCAAAGGTATTTAGAAA+AGG 0.464068 3:+93152474 MsG0380017189.01.T01:three_prime_UTR
GTCTATCACAAAATCAAAGA+AGG 0.465270 3:+93151492 MsG0380017189.01.T01:CDS
GTGGTCGAGGACAGCGCTAT+AGG 0.473850 3:+93148750 MsG0380017189.01.T01:CDS
GTTTCAGCAATAATGCCAAC+AGG 0.481394 3:+93152396 MsG0380017189.01.T01:three_prime_UTR
TGAACTAATGTTATGTTCAA+AGG 0.485312 3:+93152461 MsG0380017189.01.T01:three_prime_UTR
GCTAACTACATAACTTTACA+TGG 0.496572 3:+93150904 MsG0380017189.01.T01:CDS
CTTCATCCCAGCTACTTTAG+CGG 0.503426 3:-93148781 None:intergenic
GCCAAATCAAACCTCTCCTC+AGG 0.506138 3:-93149102 None:intergenic
AGATACTTGCCTGATTCTAC+CGG 0.514786 3:+93151457 MsG0380017189.01.T01:CDS
AACGATTATATACCTTTGTA+GGG 0.515993 3:-93150035 None:intergenic
TTACAGATGTGTCGTGGTCG+AGG 0.524433 3:+93148737 MsG0380017189.01.T01:CDS
AGTTATGTAGTTAGCCTCCA+TGG 0.526706 3:-93150896 None:intergenic
GCACATGGCGTTCGAGAGCA+TGG 0.532295 3:+93151665 MsG0380017189.01.T01:three_prime_UTR
ATACATCAGATGCATGAGCC+TGG 0.543661 3:+93151054 MsG0380017189.01.T01:CDS
GTCTGTCGCTACTACTCTTG+AGG 0.550215 3:+93151097 MsG0380017189.01.T01:CDS
TTGGTGATCCTCCTGAGGAG+AGG 0.552332 3:+93149091 MsG0380017189.01.T01:CDS
TATTAGAGCTTTGTTAACCA+TGG 0.554431 3:+93150879 MsG0380017189.01.T01:CDS
GGCCTAATATCTGCAACAGT+TGG 0.557391 3:+93152237 MsG0380017189.01.T01:three_prime_UTR
TAAACAATAGAGGACATCAA+TGG 0.561945 3:-93152503 None:intergenic
AAACCACGCATGTGTATTGG+TGG 0.565338 3:+93152272 MsG0380017189.01.T01:three_prime_UTR
TTATGCAGGTATACGGCAGA+TGG 0.570206 3:+93149033 MsG0380017189.01.T01:intron
AGTGTATAGTAACAAAGAGC+GGG 0.580787 3:+93148802 MsG0380017189.01.T01:CDS
TGGTATTCAGTTGATGATGT+TGG 0.588095 3:+93151018 MsG0380017189.01.T01:intron
GCGACAGACGAAACTCTAGC+AGG 0.588210 3:-93151083 None:intergenic
TCTATCACAAAATCAAAGAA+GGG 0.593364 3:+93151493 MsG0380017189.01.T01:CDS
GAACAGATTAAACTGTCAGA+AGG 0.597977 3:+93151426 MsG0380017189.01.T01:intron
TCTTATTTACAGATGTGTCG+TGG 0.600555 3:+93148731 MsG0380017189.01.T01:CDS
TGTTGCAAAATGCCCTACAA+AGG 0.603887 3:+93150023 MsG0380017189.01.T01:CDS
AAATCAAACCTCTCCTCAGG+AGG 0.609598 3:-93149099 None:intergenic
ACTTGCAGTTCATATTGGCA+TGG 0.614305 3:+93150135 MsG0380017189.01.T01:intron
TAGCAGCCGCTAAAGTAGCT+GGG 0.615799 3:+93148775 MsG0380017189.01.T01:CDS
TAGAGCTTTGTTAACCATGG+AGG 0.620374 3:+93150882 MsG0380017189.01.T01:CDS
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3:+93149086 MsG0380017189.01.T01:CDS
ACTACATAACTTTACATGGG+AGG 0.625525 3:+93150908 MsG0380017189.01.T01:CDS
AAGTGTATAGTAACAAAGAG+CGG 0.628437 3:+93148801 MsG0380017189.01.T01:CDS
AATGATTGTGCCAATCCTGT+TGG 0.632692 3:-93152411 None:intergenic
CTAACTACATAACTTTACAT+GGG 0.671104 3:+93150905 MsG0380017189.01.T01:CDS
AAATGTTTCTGCAAGCTGTG+CGG 0.691119 3:-93149998 None:intergenic
CATCCACCAATACACATGCG+TGG 0.710635 3:-93152275 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTAATATTATTGATCA+TGG + Chr3:93151565-93151584 MsG0380017189.01.T01:intron 10.0%
!!! ATAATCTTTTTTATTGTAAT+AGG + Chr3:93149776-93149795 MsG0380017189.01.T01:intron 10.0%
!! ATATTTATACGAAAATGAAA+GGG - Chr3:93150711-93150730 None:intergenic 15.0%
!! TAAATAAGAAATAACAACAT+AGG - Chr3:93148720-93148739 None:intergenic 15.0%
!! TATATTTATACGAAAATGAA+AGG - Chr3:93150712-93150731 None:intergenic 15.0%
!! TCAACTATTTAACATATAAA+TGG - Chr3:93149827-93149846 None:intergenic 15.0%
!! TCATATATTAATTTCCAAAT+TGG + Chr3:93150329-93150348 MsG0380017189.01.T01:intron 15.0%
!! TGATATTATTTACATGAATA+AGG - Chr3:93151798-93151817 None:intergenic 15.0%
!!! GATTATTTTGTTTTTTTAGA+TGG + Chr3:93149488-93149507 MsG0380017189.01.T01:intron 15.0%
!!! TGAAATGCATATTATTATTT+TGG + Chr3:93152147-93152166 MsG0380017189.01.T01:intron 15.0%
!! AATTTCCAAATTGGTTAATT+TGG + Chr3:93150338-93150357 MsG0380017189.01.T01:intron 20.0%
!! CAGGAAGAATTATAATAAAA+TGG - Chr3:93149887-93149906 None:intergenic 20.0%
!! GAAAAGATCAATGTTTATAT+TGG + Chr3:93149275-93149294 MsG0380017189.01.T01:intron 20.0%
!! TAGGTCAAATTTGAAAAATT+AGG - Chr3:93151161-93151180 None:intergenic 20.0%
!! TATAACCAAATTAACCAATT+TGG - Chr3:93150346-93150365 None:intergenic 20.0%
!! TTAGTTTAACAAAATCTAAC+TGG + Chr3:93151869-93151888 MsG0380017189.01.T01:intron 20.0%
!! TTGTAGTTTATCTAAATTAG+AGG + Chr3:93149721-93149740 MsG0380017189.01.T01:intron 20.0%
!!! AGATTTTGTTAAACTAAGAA+TGG - Chr3:93151866-93151885 None:intergenic 20.0%
!!! AGCAACTTTATGTTTTTTAT+AGG + Chr3:93148849-93148868 MsG0380017189.01.T01:intron 20.0%
!!! CATTTTATTATAATTCTTCC+TGG + Chr3:93149885-93149904 MsG0380017189.01.T01:intron 20.0%
!!! GATTTTGTTAAACTAAGAAT+GGG - Chr3:93151865-93151884 None:intergenic 20.0%
!!! GTATATTTCTATTTACTGAA+TGG + Chr3:93148824-93148843 MsG0380017189.01.T01:intron 20.0%
!!! TAATGTTGTTGGATTATTTT+GGG + Chr3:93149425-93149444 MsG0380017189.01.T01:intron 20.0%
!!! TTAATGTTGTTGGATTATTT+TGG + Chr3:93149424-93149443 MsG0380017189.01.T01:intron 20.0%
!!! TTTTATATATTGCCTTCATA+TGG + Chr3:93151827-93151846 MsG0380017189.01.T01:intron 20.0%
! AACGATTATATACCTTTGTA+GGG - Chr3:93150038-93150057 None:intergenic 25.0%
! AATTTAACAGTTGCTTATTC+TGG + Chr3:93149572-93149591 MsG0380017189.01.T01:intron 25.0%
! ACAAGATGAAAAAATTAACG+CGG - Chr3:93152201-93152220 None:intergenic 25.0%
! AGATTTATGCATCCATTATA+AGG - Chr3:93151960-93151979 None:intergenic 25.0%
! AGTATCAATGCTACATATAT+AGG - Chr3:93151180-93151199 None:intergenic 25.0%
! AGTTACTATTGTTTATGGAA+TGG + Chr3:93150446-93150465 MsG0380017189.01.T01:intron 25.0%
! ATGTAGTTAGATAAGTTTCT+AGG + Chr3:93150775-93150794 MsG0380017189.01.T01:intron 25.0%
! ATTTAACAGTTGCTTATTCT+GGG + Chr3:93149573-93149592 MsG0380017189.01.T01:intron 25.0%
! CTAACTACATAACTTTACAT+GGG + Chr3:93150905-93150924 MsG0380017189.01.T01:CDS 25.0%
! CTTTGATATATTTCAAGACA+TGG + Chr3:93151905-93151924 MsG0380017189.01.T01:intron 25.0%
! TCTATCACAAAATCAAAGAA+GGG + Chr3:93151493-93151512 MsG0380017189.01.T01:CDS 25.0%
! TGAACTAATGTTATGTTCAA+AGG + Chr3:93152461-93152480 MsG0380017189.01.T01:three_prime_UTR 25.0%
! TGGATCATTGTTTCATAATT+TGG + Chr3:93150285-93150304 MsG0380017189.01.T01:intron 25.0%
! TTACGAGTTACTATTGTTTA+TGG + Chr3:93150441-93150460 MsG0380017189.01.T01:intron 25.0%
! TTCGTATAAATATAGAGCAT+TGG + Chr3:93150718-93150737 MsG0380017189.01.T01:intron 25.0%
! TTGATGCTAATTAATGTTGT+TGG + Chr3:93149414-93149433 MsG0380017189.01.T01:intron 25.0%
!! AACATTGATCTTTTCATCAT+TGG - Chr3:93149270-93149289 None:intergenic 25.0%
!! CATGGTCTTTTTATATTTTC+AGG + Chr3:93151583-93151602 MsG0380017189.01.T01:intron 25.0%
!!! AAGAGAAAAAGGTTTTGATT+TGG + Chr3:93150661-93150680 MsG0380017189.01.T01:intron 25.0%
!!! GTTGACTTTTGTATTTTATC+AGG + Chr3:93149955-93149974 MsG0380017189.01.T01:intron 25.0%
!!! TGTTCAAAGGTATTTAGAAA+AGG + Chr3:93152474-93152493 MsG0380017189.01.T01:three_prime_UTR 25.0%
!!! TTTTCATCATTGGCTTAATA+GGG - Chr3:93149260-93149279 None:intergenic 25.0%
AAATGCATTATGCAGGTATA+CGG + Chr3:93149026-93149045 MsG0380017189.01.T01:intron 30.0%
AAGTGTATAGTAACAAAGAG+CGG + Chr3:93148801-93148820 MsG0380017189.01.T01:CDS 30.0%
AATGATACATGATCGAACTA+TGG - Chr3:93152174-93152193 None:intergenic 30.0%
AATTCTACTTATAAGGCCTT+AGG - Chr3:93152008-93152027 None:intergenic 30.0%
ATATTCGAGTATAAACCAGT+TGG + Chr3:93150602-93150621 MsG0380017189.01.T01:intron 30.0%
ATGTTCTTGATACCATATGA+AGG - Chr3:93151842-93151861 None:intergenic 30.0%
ATTGCTTCTACAGACAAAAA+TGG - Chr3:93150529-93150548 None:intergenic 30.0%
ATTTGAGGAGAAGCAAATAA+AGG + Chr3:93150744-93150763 MsG0380017189.01.T01:intron 30.0%
CACGTGTTAGTAAATACAAT+TGG + Chr3:93151365-93151384 MsG0380017189.01.T01:intron 30.0%
CTATATGCTCATGCTATATA+AGG - Chr3:93152102-93152121 None:intergenic 30.0%
GAACGATTATATACCTTTGT+AGG - Chr3:93150039-93150058 None:intergenic 30.0%
GATACCAACATTAAAAACAC+AGG - Chr3:93152336-93152355 None:intergenic 30.0%
GCTAACTACATAACTTTACA+TGG + Chr3:93150904-93150923 MsG0380017189.01.T01:CDS 30.0%
GCTGCATAATTCTACTTATA+AGG - Chr3:93152015-93152034 None:intergenic 30.0%
GTCTATCACAAAATCAAAGA+AGG + Chr3:93151492-93151511 MsG0380017189.01.T01:CDS 30.0%
TAATCTCAAATGCATTATGC+AGG + Chr3:93149019-93149038 MsG0380017189.01.T01:intron 30.0%
TAGAATTCAGAAGAAGAATC+AGG + Chr3:93150966-93150985 MsG0380017189.01.T01:intron 30.0%
TGATAGCTTATGAAAGTTAC+TGG - Chr3:93150312-93150331 None:intergenic 30.0%
TGTTTGGAAAAAAAAGCTGA+TGG + Chr3:93151638-93151657 MsG0380017189.01.T01:CDS 30.0%
TTAGATGGACAATGAATTTG+AGG + Chr3:93149503-93149522 MsG0380017189.01.T01:intron 30.0%
TTGCTTCTACAGACAAAAAT+GGG - Chr3:93150528-93150547 None:intergenic 30.0%
TTTACTATGAGAGAGAGAAA+TGG + Chr3:93149642-93149661 MsG0380017189.01.T01:intron 30.0%
TTTCAGAACTTACCTCTTAA+GGG - Chr3:93150204-93150223 None:intergenic 30.0%
! AGTAAGTTATGTTAGTTTCC+CGG + Chr3:93148880-93148899 MsG0380017189.01.T01:intron 30.0%
! GATTTTCTGATTCTGATTCT+GGG + Chr3:93149462-93149481 MsG0380017189.01.T01:intron 30.0%
! TGACATATTGCTTCTAAAGA+AGG - Chr3:93149140-93149159 None:intergenic 30.0%
! TGATTTTCTGATTCTGATTC+TGG + Chr3:93149461-93149480 MsG0380017189.01.T01:intron 30.0%
!! ATAGAGCATTGGAAAATTTG+AGG + Chr3:93150729-93150748 MsG0380017189.01.T01:intron 30.0%
!! TACACCTGTGTTTTTAATGT+TGG + Chr3:93152329-93152348 MsG0380017189.01.T01:three_prime_UTR 30.0%
!! TATTAGAGCTTTGTTAACCA+TGG + Chr3:93150879-93150898 MsG0380017189.01.T01:CDS 30.0%
!!! CTTTTCATCATTGGCTTAAT+AGG - Chr3:93149261-93149280 None:intergenic 30.0%
!!! TCATCTTGTTTTGTAGATGA+TGG + Chr3:93152212-93152231 MsG0380017189.01.T01:intron 30.0%
AAAAAACCACGCATGTGTAT+TGG + Chr3:93152269-93152288 MsG0380017189.01.T01:three_prime_UTR 35.0%
AACCAACTGTTGCAGATATT+AGG - Chr3:93152242-93152261 None:intergenic 35.0%
AATGGAAGGACAATAGAAAG+TGG + Chr3:93149660-93149679 MsG0380017189.01.T01:intron 35.0%
ACAAGCAACTTCTGATATGA+TGG + Chr3:93149530-93149549 MsG0380017189.01.T01:intron 35.0%
ACAATGATCCATCAGTAAGT+AGG - Chr3:93150276-93150295 None:intergenic 35.0%
ACTACATAACTTTACATGGG+AGG + Chr3:93150908-93150927 MsG0380017189.01.T01:CDS 35.0%
ACTTTACATGGGAGGATTAA+AGG + Chr3:93150916-93150935 MsG0380017189.01.T01:CDS 35.0%
AGTAAACACCTTCCAGATAA+AGG - Chr3:93149628-93149647 None:intergenic 35.0%
AGTGTATAGTAACAAAGAGC+GGG + Chr3:93148802-93148821 MsG0380017189.01.T01:CDS 35.0%
ATGAGCATATAGATCAGTAG+TGG + Chr3:93152110-93152129 MsG0380017189.01.T01:intron 35.0%
ATGGACAATGAATTTGAGGA+TGG + Chr3:93149507-93149526 MsG0380017189.01.T01:intron 35.0%
ATTGCACTTGCAGTTCATAT+TGG + Chr3:93150130-93150149 MsG0380017189.01.T01:intron 35.0%
ATTTCAGTCCTTTATCTGGA+AGG + Chr3:93149617-93149636 MsG0380017189.01.T01:intron 35.0%
ATTTGTCCAATGATCGGAAA+TGG + Chr3:93150074-93150093 MsG0380017189.01.T01:intron 35.0%
CTAACTACGAGGATTATTCA+GGG + Chr3:93150482-93150501 MsG0380017189.01.T01:intron 35.0%
CTATTGTTTATGGAATGGCT+AGG + Chr3:93150451-93150470 MsG0380017189.01.T01:intron 35.0%
CTGACTAAGATGAACATGTT+TGG + Chr3:93151622-93151641 MsG0380017189.01.T01:CDS 35.0%
GAAATGCATAACAGAAACTG+TGG + Chr3:93151927-93151946 MsG0380017189.01.T01:intron 35.0%
GAACAGATTAAACTGTCAGA+AGG + Chr3:93151426-93151445 MsG0380017189.01.T01:intron 35.0%
GATATTCCATTTCCGATCAT+TGG - Chr3:93150083-93150102 None:intergenic 35.0%
GATTTAAGCTTTCACCTGAT+TGG + Chr3:93150797-93150816 MsG0380017189.01.T01:intron 35.0%
GGATGCAGTTATAACAACAA+TGG + Chr3:93150998-93151017 MsG0380017189.01.T01:intron 35.0%
GGTAAGAGTGAAAAGAAATG+AGG - Chr3:93149239-93149258 None:intergenic 35.0%
GTTTCAGAACTTACCTCTTA+AGG - Chr3:93150205-93150224 None:intergenic 35.0%
TAACTACGAGGATTATTCAG+GGG + Chr3:93150483-93150502 MsG0380017189.01.T01:intron 35.0%
TCTTCCTGGATCTTCATTTA+TGG + Chr3:93149899-93149918 MsG0380017189.01.T01:intron 35.0%
TGCAATATGGGAAGAGAAAA+AGG + Chr3:93150650-93150669 MsG0380017189.01.T01:intron 35.0%
TGCTTCTACAGACAAAAATG+GGG - Chr3:93150527-93150546 None:intergenic 35.0%
TGTGATTTCAGTCCTTTATC+TGG + Chr3:93149613-93149632 MsG0380017189.01.T01:intron 35.0%
TTCACCTTTGCTTAGTTTCA+AGG + Chr3:93151719-93151738 MsG0380017189.01.T01:intron 35.0%
! AGTGGTTCAATTGATTCACA+TGG + Chr3:93149678-93149697 MsG0380017189.01.T01:intron 35.0%
! CTTGTCATTTGTCCAATGAT+CGG + Chr3:93150068-93150087 MsG0380017189.01.T01:intron 35.0%
! GACGTTGTATTTGACTTCAT+TGG + Chr3:93149072-93149091 MsG0380017189.01.T01:CDS 35.0%
! GAGTTTAAAGTCAGAGATCT+CGG - Chr3:93148913-93148932 None:intergenic 35.0%
! TCTTATTTACAGATGTGTCG+TGG + Chr3:93148731-93148750 MsG0380017189.01.T01:CDS 35.0%
!! AGCACTGATAGAAATAGTGA+AGG - Chr3:93149211-93149230 None:intergenic 35.0%
!! AGTTGATGATGTTGGTTCTT+TGG + Chr3:93151026-93151045 MsG0380017189.01.T01:intron 35.0%
!! TGGTATTCAGTTGATGATGT+TGG + Chr3:93151018-93151037 MsG0380017189.01.T01:intron 35.0%
!!! AGGTTTGATTTGGCATTTTG+TGG + Chr3:93149111-93149130 MsG0380017189.01.T01:CDS 35.0%
!!! CTTGTTTTGTAGATGATGGT+AGG + Chr3:93152216-93152235 MsG0380017189.01.T01:intron 35.0%
AATGATTGTGCCAATCCTGT+TGG - Chr3:93152414-93152433 None:intergenic 40.0%
ACTCTTGAGGTAAGCATCTT+CGG + Chr3:93151110-93151129 MsG0380017189.01.T01:intron 40.0%
ACTTGCAGTTCATATTGGCA+TGG + Chr3:93150135-93150154 MsG0380017189.01.T01:intron 40.0%
AGATACTTGCCTGATTCTAC+CGG + Chr3:93151457-93151476 MsG0380017189.01.T01:CDS 40.0%
AGCAATAATGCCAACAGGAT+TGG + Chr3:93152401-93152420 MsG0380017189.01.T01:three_prime_UTR 40.0%
ATTGGTTAGAGTTGAAGGCT+TGG + Chr3:93150815-93150834 MsG0380017189.01.T01:intron 40.0%
CAGGGGATAAGAATTATCAG+AGG + Chr3:93150500-93150519 MsG0380017189.01.T01:intron 40.0%
CATGCCTTGAAACTAAGCAA+AGG - Chr3:93151726-93151745 None:intergenic 40.0%
CTATGAGAGAGAGAAATGGA+AGG + Chr3:93149646-93149665 MsG0380017189.01.T01:intron 40.0%
GAGGATTAAAGGTAAGTGCT+TGG + Chr3:93150927-93150946 MsG0380017189.01.T01:intron 40.0%
GATAGACTTGCAGTATTTGC+CGG - Chr3:93151479-93151498 None:intergenic 40.0%
GCAAAATCAGGCTCTACTAT+TGG + Chr3:93150167-93150186 MsG0380017189.01.T01:CDS 40.0%
GCTAACTACGAGGATTATTC+AGG + Chr3:93150481-93150500 MsG0380017189.01.T01:intron 40.0%
GTAATACAGCTCTTTGCCTA+AGG + Chr3:93151989-93152008 MsG0380017189.01.T01:intron 40.0%
GTTGCCATAAATGAAGATCC+AGG - Chr3:93149906-93149925 None:intergenic 40.0%
GTTTCAGCAATAATGCCAAC+AGG + Chr3:93152396-93152415 MsG0380017189.01.T01:three_prime_UTR 40.0%
TAGCAAACTGTGAAGTGATG+AGG + Chr3:93149162-93149181 MsG0380017189.01.T01:intron 40.0%
TCATTCGTGGAGCAAATTAC+AGG - Chr3:93149371-93149390 None:intergenic 40.0%
TCGAGTATAAACCAGTTGGT+TGG + Chr3:93150606-93150625 MsG0380017189.01.T01:intron 40.0%
TCTTGATACATCCAACCAAC+TGG - Chr3:93150620-93150639 None:intergenic 40.0%
TGTTGCAAAATGCCCTACAA+AGG + Chr3:93150023-93150042 MsG0380017189.01.T01:CDS 40.0%
! AAATGTTTCTGCAAGCTGTG+CGG - Chr3:93150001-93150020 None:intergenic 40.0%
! ACCTGATTGGTTAGAGTTGA+AGG + Chr3:93150810-93150829 MsG0380017189.01.T01:intron 40.0%
! AGTTATGTAGTTAGCCTCCA+TGG - Chr3:93150899-93150918 None:intergenic 40.0%
! GAGAGCATGGTATGTAATCT+TGG + Chr3:93151678-93151697 MsG0380017189.01.T01:intron 40.0%
!! AAAGCTGATGGTTTTGCACA+TGG + Chr3:93151650-93151669 MsG0380017189.01.T01:exon 40.0%
!! AGAAGAATCAGGTTGACTGT+TGG + Chr3:93150977-93150996 MsG0380017189.01.T01:intron 40.0%
!! AGAGAGAGCATTGTGCAATA+TGG + Chr3:93150637-93150656 MsG0380017189.01.T01:intron 40.0%
!! GAGAGAGCATTGTGCAATAT+GGG + Chr3:93150638-93150657 MsG0380017189.01.T01:intron 40.0%
!! GCATTGATTCTTCCCTTAAG+AGG + Chr3:93150189-93150208 MsG0380017189.01.T01:CDS 40.0%
!! TAGAGCTTTGTTAACCATGG+AGG + Chr3:93150882-93150901 MsG0380017189.01.T01:CDS 40.0%
AAACCACGCATGTGTATTGG+TGG + Chr3:93152272-93152291 MsG0380017189.01.T01:three_prime_UTR 45.0%
AAATCAAACCTCTCCTCAGG+AGG - Chr3:93149102-93149121 None:intergenic 45.0%
AGAGATCTCGGATTTGATCC+GGG - Chr3:93148901-93148920 None:intergenic 45.0%
ATACATCAGATGCATGAGCC+TGG + Chr3:93151054-93151073 MsG0380017189.01.T01:CDS 45.0%
CAGAGAAGCTAACTCATTCG+TGG - Chr3:93149384-93149403 None:intergenic 45.0%
CAGAGATCTCGGATTTGATC+CGG - Chr3:93148902-93148921 None:intergenic 45.0%
CAGTATTTGCCGGTAGAATC+AGG - Chr3:93151469-93151488 None:intergenic 45.0%
CTGAAAGCAGGAACGAAAAG+AGG - Chr3:93150402-93150421 None:intergenic 45.0%
GCCTTCAACTCTAACCAATC+AGG - Chr3:93150814-93150833 None:intergenic 45.0%
GGCCTAATATCTGCAACAGT+TGG + Chr3:93152237-93152256 MsG0380017189.01.T01:three_prime_UTR 45.0%
TCCTGAGGAGAGGTTTGATT+TGG + Chr3:93149101-93149120 MsG0380017189.01.T01:CDS 45.0%
TCCTGCTTTCAGCTATGAGA+GGG + Chr3:93150410-93150429 MsG0380017189.01.T01:intron 45.0%
TGATGGCAAGCAGTCAACAA+AGG + Chr3:93149547-93149566 MsG0380017189.01.T01:intron 45.0%
TGCAGAAGCCTACTTACTGA+TGG + Chr3:93150265-93150284 MsG0380017189.01.T01:intron 45.0%
TGGCAGCAAAGTGCAAAATC+AGG + Chr3:93150155-93150174 MsG0380017189.01.T01:CDS 45.0%
TGTGGCGCGAATCCTTATAA+TGG + Chr3:93151945-93151964 MsG0380017189.01.T01:intron 45.0%
TTAGAAGTCCCACACTACGA+AGG - Chr3:93148968-93148987 None:intergenic 45.0%
TTATGCAGGTATACGGCAGA+TGG + Chr3:93149033-93149052 MsG0380017189.01.T01:intron 45.0%
TTCCTGCTTTCAGCTATGAG+AGG + Chr3:93150409-93150428 MsG0380017189.01.T01:intron 45.0%
! CTTCATCCCAGCTACTTTAG+CGG - Chr3:93148784-93148803 None:intergenic 45.0%
AACTCTAGCAGGCTCTTTCC+AGG - Chr3:93151075-93151094 None:intergenic 50.0%
AGGTTGTGCAGCTAACTACG+AGG + Chr3:93150471-93150490 MsG0380017189.01.T01:intron 50.0%
CATCCACCAATACACATGCG+TGG - Chr3:93152278-93152297 None:intergenic 50.0%
GCCAAATCAAACCTCTCCTC+AGG - Chr3:93149105-93149124 None:intergenic 50.0%
GGTGAGCTAAGGGACATTGA+AGG - Chr3:93148935-93148954 None:intergenic 50.0%
GTCGACATGATTCTCACACG+TGG + Chr3:93151229-93151248 MsG0380017189.01.T01:intron 50.0%
GTCTGTCGCTACTACTCTTG+AGG + Chr3:93151097-93151116 MsG0380017189.01.T01:CDS 50.0%
TAGCAGCCGCTAAAGTAGCT+GGG + Chr3:93148775-93148794 MsG0380017189.01.T01:CDS 50.0%
TCCCTCTCATAGCTGAAAGC+AGG - Chr3:93150414-93150433 None:intergenic 50.0%
TTACAGATGTGTCGTGGTCG+AGG + Chr3:93148737-93148756 MsG0380017189.01.T01:CDS 50.0%
! CTTCATTGGTGATCCTCCTG+AGG + Chr3:93149086-93149105 MsG0380017189.01.T01:CDS 50.0%
CTAGCAGCCGCTAAAGTAGC+TGG + Chr3:93148774-93148793 MsG0380017189.01.T01:CDS 55.0%
GCGACAGACGAAACTCTAGC+AGG - Chr3:93151086-93151105 None:intergenic 55.0%
! TTGGTGATCCTCCTGAGGAG+AGG + Chr3:93149091-93149110 MsG0380017189.01.T01:CDS 55.0%
!! CAGCTCGGTTGGTGAGCTAA+GGG - Chr3:93148945-93148964 None:intergenic 55.0%
ACCGAGCTGCCTTCGTAGTG+TGG + Chr3:93148956-93148975 MsG0380017189.01.T01:intron 60.0%
CACTACGAAGGCAGCTCGGT+TGG - Chr3:93148956-93148975 None:intergenic 60.0%
CCCACACTACGAAGGCAGCT+CGG - Chr3:93148960-93148979 None:intergenic 60.0%
CCGAGCTGCCTTCGTAGTGT+GGG + Chr3:93148957-93148976 MsG0380017189.01.T01:intron 60.0%
GCACATGGCGTTCGAGAGCA+TGG + Chr3:93151665-93151684 MsG0380017189.01.T01:three_prime_UTR 60.0%
GTGGTCGAGGACAGCGCTAT+AGG + Chr3:93148750-93148769 MsG0380017189.01.T01:CDS 60.0%
!! GCAGCTCGGTTGGTGAGCTA+AGG - Chr3:93148946-93148965 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 93148720 93152515 93148720 ID=MsG0380017189.01;Name=MsG0380017189.01
Chr3 mRNA 93148720 93152515 93148720 ID=MsG0380017189.01.T01;Parent=MsG0380017189.01;Name=MsG0380017189.01.T01;_AED=0.49;_eAED=0.57;_QI=0|0.5|0.44|1|0.87|0.77|9|317|209
Chr3 exon 93148720 93148823 93148720 ID=MsG0380017189.01.T01:exon:5341;Parent=MsG0380017189.01.T01
Chr3 exon 93149041 93149132 93149041 ID=MsG0380017189.01.T01:exon:5342;Parent=MsG0380017189.01.T01
Chr3 exon 93149977 93150044 93149977 ID=MsG0380017189.01.T01:exon:5343;Parent=MsG0380017189.01.T01
Chr3 exon 93150143 93150210 93150143 ID=MsG0380017189.01.T01:exon:5344;Parent=MsG0380017189.01.T01
Chr3 exon 93150867 93150937 93150867 ID=MsG0380017189.01.T01:exon:5345;Parent=MsG0380017189.01.T01
Chr3 exon 93151028 93151118 93151028 ID=MsG0380017189.01.T01:exon:5346;Parent=MsG0380017189.01.T01
Chr3 exon 93151432 93151514 93151432 ID=MsG0380017189.01.T01:exon:5347;Parent=MsG0380017189.01.T01
Chr3 exon 93151605 93151686 93151605 ID=MsG0380017189.01.T01:exon:5348;Parent=MsG0380017189.01.T01
Chr3 exon 93152228 93152515 93152228 ID=MsG0380017189.01.T01:exon:5349;Parent=MsG0380017189.01.T01
Chr3 CDS 93148720 93148823 93148720 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93149041 93149132 93149041 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93149977 93150044 93149977 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93150143 93150210 93150143 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93150867 93150937 93150867 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93151028 93151118 93151028 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93151432 93151514 93151432 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 CDS 93151605 93151657 93151605 ID=MsG0380017189.01.T01:cds;Parent=MsG0380017189.01.T01
Chr3 three_prime_UTR 93151658 93151686 93151658 ID=MsG0380017189.01.T01:three_prime_utr;Parent=MsG0380017189.01.T01
Chr3 three_prime_UTR 93152228 93152515 93152228 ID=MsG0380017189.01.T01:three_prime_utr;Parent=MsG0380017189.01.T01
Gene Sequence

>MsG0380017189.01.T01

ATGTTGTTATTTCTTATTTACAGATGTGTCGTGGTCGAGGACAGCGCTATAGGTCTAGCAGCCGCTAAAGTAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACGGCAGATGGAGATTTCTTAAATGCAGACGTTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGGTTTGATTTGGCATTTTGTGGTGTGACATCAAACACAGATGCCGCACAGCTTGCAGAAACATTTGTTGTTGCAAAATGCCCTACAAAGTTCATATTGGCATGGCAGCAAAGTGCAAAATCAGGCTCTACTATTGGCATTGATTCTTCCCTTAAGAGTGCTATAAGAGATATTAGAGCTTTGTTAACCATGGAGGCTAACTACATAACTTTACATGGGAGGATTAAAGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCATGAGCCTGGAAAGAGCCTGCTAGAGTTTCGTCTGTCGCTACTACTCTTGAGATTAAACTGTCAGAAGGCTGCAAAGAGATACTTGCCTGATTCTACCGGCAAATACTGCAAGTCTATCACAAAATCAAAGAAGGGTAAATTAAATTCAGTTCTGACTAAGATGAACATGTTTGGAAAAAAAAGCTGA
Protein sequence

>MsG0380017189.01.T01

MLLFLIYRCVVVEDSAIGLAAAKVAGMKCIVTKSGYTADGDFLNADVVFDFIGDPPEERFDLAFCGVTSNTDAAQLAETFVVAKCPTKFILAWQQSAKSGSTIGIDSSLKSAIRDIRALLTMEANYITLHGRIKVDDVGSLAIIHQMHEPGKSLLEFRLSLLLLRLNCQKAAKRYLPDSTGKYCKSITKSKKGKLNSVLTKMNMFGKKS*