Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034109.01.T01 | THU70092.1 | 74.227 | 97 | 25 | 0 | 5 | 101 | 217 | 313 | 1.10E-43 | 158 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034109.01.T01 | P47927 | 75 | 92 | 23 | 0 | 10 | 101 | 155 | 246 | 1.21E-34 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0680034109.01 | MsG0680034110.01 | 0.860430 | 2.077706e-63 | 5.677976e-60 |
| MsG0680034109.01 | MsG0780040190.01 | 0.805740 | 1.153594e-49 | 6.151040e-47 |
| MsG0680034109.01 | MsG0880047250.01 | 0.813888 | 2.037808e-51 | 1.347141e-48 |
| MsG0380015186.01 | MsG0680034109.01 | 0.852773 | 3.705603e-61 | 7.827694e-58 |
| MsG0380015187.01 | MsG0680034109.01 | 0.805671 | 1.193016e-49 | 6.349636e-47 |
| MsG0380017188.01 | MsG0680034109.01 | 0.862682 | 4.263981e-64 | 1.259355e-60 |
| MsG0380017189.01 | MsG0680034109.01 | 0.823900 | 1.079748e-53 | 9.419541e-51 |
| MsG0580029539.01 | MsG0680034109.01 | 0.828695 | 7.793005e-55 | 7.803882e-52 |
| MsG0280010547.01 | MsG0680034109.01 | 0.805328 | 1.407400e-49 | 7.425001e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034109.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 10 | 101 | 155 | 246 | 3.51e-42 | 143 |
| MsG0680034109.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 10 | 101 | 155 | 246 | 5.48e-42 | 143 |
| MsG0680034109.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 10 | 101 | 155 | 246 | 1.50e-41 | 140 |
| MsG0680034109.01.T01 | MTR_4g061200 | 84.783 | 92 | 14 | 0 | 10 | 101 | 155 | 246 | 2.89e-41 | 139 |
| MsG0680034109.01.T01 | MTR_3g090510 | 89.773 | 88 | 9 | 0 | 14 | 101 | 163 | 250 | 5.51e-41 | 139 |
| MsG0680034109.01.T01 | MTR_7g060560 | 84.091 | 88 | 13 | 1 | 14 | 101 | 156 | 242 | 5.22e-35 | 123 |
| MsG0680034109.01.T01 | MTR_7g100590 | 72.826 | 92 | 25 | 0 | 10 | 101 | 163 | 254 | 1.08e-34 | 124 |
| MsG0680034109.01.T01 | MTR_4g094868 | 72.826 | 92 | 25 | 0 | 10 | 101 | 44 | 135 | 1.93e-34 | 121 |
| MsG0680034109.01.T01 | MTR_5g016810 | 72.826 | 92 | 25 | 0 | 10 | 101 | 176 | 267 | 4.88e-34 | 122 |
| MsG0680034109.01.T01 | MTR_4g094868 | 72.826 | 92 | 25 | 0 | 10 | 101 | 200 | 291 | 8.18e-34 | 122 |
| MsG0680034109.01.T01 | MTR_4g094868 | 72.826 | 92 | 25 | 0 | 10 | 101 | 200 | 291 | 8.49e-34 | 122 |
| MsG0680034109.01.T01 | MTR_7g061190 | 75.000 | 88 | 22 | 0 | 14 | 101 | 9 | 96 | 1.23e-33 | 114 |
| MsG0680034109.01.T01 | MTR_5g016810 | 72.527 | 91 | 25 | 0 | 10 | 100 | 176 | 266 | 2.55e-33 | 120 |
| MsG0680034109.01.T01 | MTR_2g093060 | 71.739 | 92 | 26 | 0 | 10 | 101 | 158 | 249 | 2.90e-33 | 119 |
| MsG0680034109.01.T01 | MTR_2g093060 | 71.739 | 92 | 26 | 0 | 10 | 101 | 158 | 249 | 3.26e-33 | 119 |
| MsG0680034109.01.T01 | MTR_2g093060 | 71.739 | 92 | 26 | 0 | 10 | 101 | 158 | 249 | 3.29e-33 | 119 |
| MsG0680034109.01.T01 | MTR_1g037030 | 85.417 | 48 | 7 | 0 | 52 | 99 | 118 | 165 | 2.09e-23 | 89.7 |
| MsG0680034109.01.T01 | MTR_4g097520 | 45.556 | 90 | 48 | 1 | 13 | 101 | 347 | 436 | 3.65e-21 | 87.0 |
| MsG0680034109.01.T01 | MTR_3g103460 | 45.556 | 90 | 48 | 1 | 13 | 101 | 347 | 436 | 6.12e-21 | 86.3 |
| MsG0680034109.01.T01 | MTR_7g009410 | 45.556 | 90 | 48 | 1 | 13 | 101 | 102 | 191 | 2.95e-20 | 84.0 |
| MsG0680034109.01.T01 | MTR_8g020510 | 44.444 | 90 | 49 | 1 | 13 | 101 | 285 | 374 | 3.60e-20 | 84.0 |
| MsG0680034109.01.T01 | MTR_5g015070 | 43.011 | 93 | 52 | 1 | 10 | 101 | 286 | 378 | 6.77e-20 | 83.2 |
| MsG0680034109.01.T01 | MTR_4g127930 | 40.860 | 93 | 54 | 1 | 10 | 101 | 196 | 288 | 7.23e-20 | 83.2 |
| MsG0680034109.01.T01 | MTR_7g080460 | 39.785 | 93 | 55 | 1 | 10 | 101 | 296 | 388 | 2.22e-19 | 81.6 |
| MsG0680034109.01.T01 | MTR_1g017400 | 42.222 | 90 | 51 | 1 | 13 | 101 | 349 | 438 | 2.56e-19 | 81.6 |
| MsG0680034109.01.T01 | MTR_6g011490 | 44.444 | 90 | 49 | 1 | 13 | 101 | 98 | 187 | 3.52e-19 | 80.9 |
| MsG0680034109.01.T01 | MTR_4g130270 | 41.935 | 93 | 53 | 1 | 10 | 101 | 84 | 176 | 5.93e-19 | 80.1 |
| MsG0680034109.01.T01 | MTR_8g044070 | 45.556 | 90 | 48 | 1 | 13 | 101 | 92 | 181 | 1.07e-18 | 79.7 |
| MsG0680034109.01.T01 | MTR_5g031880 | 44.444 | 90 | 49 | 1 | 13 | 101 | 261 | 350 | 1.15e-18 | 79.7 |
| MsG0680034109.01.T01 | MTR_8g068510 | 45.556 | 90 | 48 | 1 | 13 | 101 | 168 | 257 | 2.38e-18 | 78.6 |
| MsG0680034109.01.T01 | MTR_4g065370 | 37.634 | 93 | 57 | 1 | 10 | 101 | 200 | 292 | 2.47e-18 | 79.0 |
| MsG0680034109.01.T01 | MTR_2g098180 | 38.710 | 93 | 56 | 1 | 10 | 101 | 204 | 296 | 4.70e-18 | 77.8 |
| MsG0680034109.01.T01 | MTR_7g055620 | 76.190 | 42 | 10 | 0 | 60 | 101 | 6 | 47 | 8.20e-16 | 71.2 |
| MsG0680034109.01.T01 | MTR_8g044040 | 44.444 | 90 | 49 | 1 | 13 | 101 | 93 | 182 | 3.76e-15 | 69.7 |
| MsG0680034109.01.T01 | MTR_7g111940 | 88.636 | 44 | 5 | 0 | 9 | 52 | 115 | 158 | 1.12e-14 | 66.2 |
| MsG0680034109.01.T01 | MTR_8g468920 | 45.556 | 90 | 48 | 1 | 13 | 101 | 106 | 195 | 2.35e-14 | 67.4 |
| MsG0680034109.01.T01 | MTR_4g007770 | 44.444 | 90 | 49 | 1 | 13 | 101 | 73 | 162 | 1.40e-12 | 62.0 |
| MsG0680034109.01.T01 | MTR_1g049140 | 53.488 | 86 | 38 | 2 | 10 | 94 | 161 | 245 | 2.66e-12 | 61.6 |
| MsG0680034109.01.T01 | MTR_1g049140 | 53.488 | 86 | 38 | 2 | 10 | 94 | 161 | 245 | 5.18e-12 | 60.5 |
| MsG0680034109.01.T01 | MTR_1g049140 | 51.064 | 94 | 43 | 3 | 10 | 101 | 161 | 253 | 9.45e-12 | 59.3 |
| MsG0680034109.01.T01 | MTR_7g091390 | 41.111 | 90 | 49 | 1 | 10 | 99 | 3 | 88 | 1.13e-11 | 59.7 |
| MsG0680034109.01.T01 | MTR_2g460730 | 41.096 | 73 | 42 | 1 | 30 | 101 | 101 | 173 | 2.47e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680034109.01.T01 | AT2G28550 | 71.717 | 99 | 28 | 0 | 3 | 101 | 4 | 102 | 4.38e-36 | 124 |
| MsG0680034109.01.T01 | AT4G36920 | 75.000 | 92 | 23 | 0 | 10 | 101 | 155 | 246 | 1.23e-35 | 125 |
| MsG0680034109.01.T01 | AT4G36920 | 75.000 | 92 | 23 | 0 | 10 | 101 | 155 | 246 | 1.23e-35 | 125 |
| MsG0680034109.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 10 | 101 | 177 | 268 | 2.18e-34 | 119 |
| MsG0680034109.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 10 | 101 | 177 | 268 | 2.18e-34 | 119 |
| MsG0680034109.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 10 | 101 | 177 | 268 | 6.96e-34 | 119 |
| MsG0680034109.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 10 | 101 | 177 | 268 | 1.06e-33 | 120 |
| MsG0680034109.01.T01 | AT2G28550 | 73.913 | 92 | 24 | 0 | 10 | 101 | 177 | 268 | 1.53e-33 | 120 |
| MsG0680034109.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 10 | 101 | 120 | 211 | 6.11e-32 | 114 |
| MsG0680034109.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 10 | 101 | 120 | 211 | 1.65e-31 | 111 |
| MsG0680034109.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 10 | 101 | 120 | 211 | 3.13e-31 | 111 |
| MsG0680034109.01.T01 | AT5G67180 | 69.565 | 92 | 28 | 0 | 10 | 101 | 120 | 211 | 3.40e-31 | 111 |
| MsG0680034109.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 10 | 99 | 184 | 273 | 1.80e-22 | 90.5 |
| MsG0680034109.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 10 | 99 | 184 | 273 | 1.83e-22 | 90.5 |
| MsG0680034109.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 10 | 99 | 184 | 273 | 2.02e-22 | 90.5 |
| MsG0680034109.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 10 | 99 | 184 | 273 | 1.07e-21 | 87.8 |
| MsG0680034109.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 10 | 99 | 184 | 273 | 1.07e-21 | 87.8 |
| MsG0680034109.01.T01 | AT5G60120 | 58.889 | 90 | 37 | 0 | 10 | 99 | 184 | 273 | 1.07e-21 | 87.8 |
| MsG0680034109.01.T01 | AT2G39250 | 54.930 | 71 | 32 | 0 | 10 | 80 | 132 | 202 | 1.17e-21 | 87.0 |
| MsG0680034109.01.T01 | AT2G39250 | 52.000 | 75 | 36 | 0 | 10 | 84 | 132 | 206 | 4.52e-21 | 84.0 |
| MsG0680034109.01.T01 | AT5G57390 | 40.860 | 93 | 54 | 1 | 10 | 101 | 119 | 211 | 3.73e-20 | 84.0 |
| MsG0680034109.01.T01 | AT5G57390 | 40.860 | 93 | 54 | 1 | 10 | 101 | 237 | 329 | 4.38e-20 | 84.0 |
| MsG0680034109.01.T01 | AT1G72570 | 40.860 | 93 | 54 | 1 | 10 | 101 | 257 | 349 | 5.04e-20 | 83.2 |
| MsG0680034109.01.T01 | AT1G51190 | 39.785 | 93 | 55 | 1 | 10 | 101 | 224 | 316 | 1.08e-19 | 82.8 |
| MsG0680034109.01.T01 | AT5G17430 | 40.860 | 93 | 54 | 1 | 10 | 101 | 244 | 336 | 2.16e-19 | 82.0 |
| MsG0680034109.01.T01 | AT5G17430 | 40.860 | 93 | 54 | 1 | 10 | 101 | 182 | 274 | 2.32e-19 | 81.6 |
| MsG0680034109.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 10 | 101 | 265 | 357 | 3.27e-19 | 81.3 |
| MsG0680034109.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 10 | 101 | 265 | 357 | 3.27e-19 | 81.3 |
| MsG0680034109.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 10 | 101 | 207 | 299 | 4.60e-19 | 80.9 |
| MsG0680034109.01.T01 | AT4G37750 | 40.860 | 93 | 54 | 1 | 10 | 101 | 317 | 409 | 5.35e-19 | 80.9 |
| MsG0680034109.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 10 | 101 | 33 | 125 | 6.67e-19 | 80.1 |
| MsG0680034109.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 10 | 101 | 33 | 125 | 6.67e-19 | 80.1 |
| MsG0680034109.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 10 | 101 | 302 | 394 | 6.87e-19 | 80.5 |
| MsG0680034109.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 10 | 101 | 302 | 394 | 6.87e-19 | 80.5 |
| MsG0680034109.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 10 | 101 | 99 | 191 | 7.36e-19 | 80.1 |
| MsG0680034109.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 10 | 101 | 264 | 356 | 8.85e-19 | 80.1 |
| MsG0680034109.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 10 | 101 | 264 | 356 | 8.85e-19 | 80.1 |
| MsG0680034109.01.T01 | AT3G54320 | 40.860 | 93 | 54 | 1 | 10 | 101 | 99 | 191 | 8.96e-19 | 80.1 |
| MsG0680034109.01.T01 | AT5G10510 | 40.860 | 93 | 54 | 1 | 10 | 101 | 287 | 379 | 9.17e-19 | 80.1 |
| MsG0680034109.01.T01 | AT5G65510 | 41.935 | 93 | 53 | 1 | 10 | 101 | 207 | 299 | 1.15e-18 | 79.0 |
| MsG0680034109.01.T01 | AT3G20840 | 37.634 | 93 | 57 | 1 | 10 | 101 | 215 | 307 | 3.29e-18 | 78.6 |
| MsG0680034109.01.T01 | AT5G10510 | 42.222 | 90 | 51 | 1 | 13 | 101 | 264 | 353 | 6.90e-18 | 77.4 |
| MsG0680034109.01.T01 | AT5G10510 | 40.594 | 101 | 58 | 2 | 2 | 101 | 315 | 414 | 2.40e-17 | 75.9 |
| MsG0680034109.01.T01 | AT3G54990 | 55.422 | 83 | 37 | 0 | 10 | 92 | 146 | 228 | 1.66e-16 | 72.0 |
| MsG0680034109.01.T01 | AT3G54990 | 58.974 | 78 | 32 | 0 | 10 | 87 | 146 | 223 | 3.27e-16 | 72.4 |
| MsG0680034109.01.T01 | AT1G79700 | 45.161 | 93 | 50 | 1 | 10 | 101 | 86 | 178 | 3.91e-15 | 69.3 |
| MsG0680034109.01.T01 | AT1G79700 | 45.161 | 93 | 50 | 1 | 10 | 101 | 10 | 102 | 6.89e-15 | 67.8 |
| MsG0680034109.01.T01 | AT1G16060 | 44.086 | 93 | 51 | 1 | 10 | 101 | 92 | 184 | 2.61e-14 | 67.0 |
| MsG0680034109.01.T01 | AT1G79700 | 46.154 | 91 | 48 | 1 | 12 | 101 | 6 | 96 | 3.02e-14 | 65.9 |
| MsG0680034109.01.T01 | AT1G16060 | 44.086 | 93 | 51 | 1 | 10 | 101 | 22 | 114 | 1.08e-13 | 65.1 |
| MsG0680034109.01.T01 | AT1G79700 | 43.956 | 91 | 50 | 1 | 10 | 99 | 86 | 176 | 2.64e-13 | 63.9 |
| MsG0680034109.01.T01 | AT2G41710 | 41.111 | 90 | 49 | 1 | 10 | 99 | 104 | 189 | 1.45e-11 | 59.7 |
| MsG0680034109.01.T01 | AT2G41710 | 41.111 | 90 | 49 | 1 | 10 | 99 | 104 | 189 | 1.50e-11 | 59.3 |
| MsG0680034109.01.T01 | AT2G41710 | 41.111 | 90 | 49 | 1 | 10 | 99 | 139 | 224 | 1.82e-11 | 59.3 |
Find 14 sgRNAs with CRISPR-Local
Find 34 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCGAGCTGCGATTAAATTC+AGG | 0.379752 | 6:+80768969 | MsG0680034109.01.T01:CDS |
| TTATGATGATGATCTTAAAC+AGG | 0.440099 | 6:+80769027 | MsG0680034109.01.T01:CDS |
| TTTAATCGCAGCTCGATCAT+AGG | 0.441826 | 6:-80768963 | None:intergenic |
| TGGCAGTTGGGAAGCTCGAA+TGG | 0.485503 | 6:+80769235 | MsG0680034109.01.T01:CDS |
| GCGATTAAATTCAGGGGAGT+TGG | 0.497882 | 6:+80768977 | MsG0680034109.01.T01:CDS |
| CACTGCACAAATGTGGCAGT+TGG | 0.508097 | 6:+80769222 | MsG0680034109.01.T01:CDS |
| GCTCGAATGGGTCAATTCCT+TGG | 0.510521 | 6:+80769248 | MsG0680034109.01.T01:CDS |
| ACTGCACAAATGTGGCAGTT+GGG | 0.511914 | 6:+80769223 | MsG0680034109.01.T01:CDS |
| TCGAGCTGCGATTAAATTCA+GGG | 0.538997 | 6:+80768970 | MsG0680034109.01.T01:CDS |
| ACACAGCTCATGTTGCTGCT+AGG | 0.553358 | 6:+80768858 | MsG0680034109.01.T01:CDS |
| GGCAGTTGGGAAGCTCGAAT+GGG | 0.571868 | 6:+80769236 | MsG0680034109.01.T01:CDS |
| GGAGTAACACTGCACAAATG+TGG | 0.639362 | 6:+80769215 | MsG0680034109.01.T01:CDS |
| AGAGGGAGTTCGAAGTACAG+AGG | 0.669918 | 6:+80769194 | MsG0680034109.01.T01:CDS |
| CGAGCTGCGATTAAATTCAG+GGG | 0.681626 | 6:+80768971 | MsG0680034109.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATATGATTTACTATTTT+AGG | + | Chr6:80768794-80768813 | MsG0680034109.01.T01:intron | 10.0% |
| !!! | TTGTGTAATTAATTTTTTTA+TGG | + | Chr6:80768909-80768928 | MsG0680034109.01.T01:intron | 10.0% |
| !!! | ACTATTTTTTTCTTTGATTT+TGG | + | Chr6:80768758-80768777 | MsG0680034109.01.T01:intron | 15.0% |
| !! | AAATAAAAACTTGGAAAGAT+AGG | - | Chr6:80768526-80768545 | None:intergenic | 20.0% |
| !! | TGAAGTGAAAAATAAAAACT+TGG | - | Chr6:80768535-80768554 | None:intergenic | 20.0% |
| !!! | GTTTTGTATTTGATTTTTGT+AGG | + | Chr6:80768827-80768846 | MsG0680034109.01.T01:CDS | 20.0% |
| !! | AAATCAATGTTTTCTCAAGA+GGG | + | Chr6:80769177-80769196 | MsG0680034109.01.T01:CDS | 25.0% |
| !! | TTATGATGATGATCTTAAAC+AGG | + | Chr6:80769027-80769046 | MsG0680034109.01.T01:CDS | 25.0% |
| !!! | TTGTATTTGATTTTTGTAGG+TGG | + | Chr6:80768830-80768849 | MsG0680034109.01.T01:CDS | 25.0% |
| CAGCAATAGAGAAAATCAAA+AGG | - | Chr6:80768640-80768659 | None:intergenic | 30.0% | |
| TTGATGAATGTGAAACTAGA+TGG | + | Chr6:80769071-80769090 | MsG0680034109.01.T01:intron | 30.0% | |
| ! | AGGCTCTGATATTCAAAATT+TGG | - | Chr6:80768946-80768965 | None:intergenic | 30.0% |
| ! | CAAATCAATGTTTTCTCAAG+AGG | + | Chr6:80769176-80769195 | MsG0680034109.01.T01:CDS | 30.0% |
| AGATCATTAGGATCATCTCA+GGG | + | Chr6:80768715-80768734 | MsG0680034109.01.T01:intron | 35.0% | |
| AGATGATCCTAATGATCTGT+AGG | - | Chr6:80768713-80768732 | None:intergenic | 35.0% | |
| CAAAAGTCCTACAGATCATT+AGG | + | Chr6:80768703-80768722 | MsG0680034109.01.T01:intron | 35.0% | |
| ! | GTTTCAATTTGGGATGTTAC+TGG | + | Chr6:80768488-80768507 | MsG0680034109.01.T01:intron | 35.0% |
| ATCGAGCTGCGATTAAATTC+AGG | + | Chr6:80768969-80768988 | MsG0680034109.01.T01:CDS | 40.0% | |
| CAGATCATTAGGATCATCTC+AGG | + | Chr6:80768714-80768733 | MsG0680034109.01.T01:intron | 40.0% | |
| GATCATTAGGATCATCTCAG+GGG | + | Chr6:80768716-80768735 | MsG0680034109.01.T01:intron | 40.0% | |
| TCGAGCTGCGATTAAATTCA+GGG | + | Chr6:80768970-80768989 | MsG0680034109.01.T01:CDS | 40.0% | |
| TTTAATCGCAGCTCGATCAT+AGG | - | Chr6:80768966-80768985 | None:intergenic | 40.0% | |
| ACTGCACAAATGTGGCAGTT+GGG | + | Chr6:80769223-80769242 | MsG0680034109.01.T01:CDS | 45.0% | |
| CGAGCTGCGATTAAATTCAG+GGG | + | Chr6:80768971-80768990 | MsG0680034109.01.T01:CDS | 45.0% | |
| GCGATTAAATTCAGGGGAGT+TGG | + | Chr6:80768977-80768996 | MsG0680034109.01.T01:CDS | 45.0% | |
| GGAGTAACACTGCACAAATG+TGG | + | Chr6:80769215-80769234 | MsG0680034109.01.T01:CDS | 45.0% | |
| ACACAGCTCATGTTGCTGCT+AGG | + | Chr6:80768858-80768877 | MsG0680034109.01.T01:CDS | 50.0% | |
| AGAGGGAGTTCGAAGTACAG+AGG | + | Chr6:80769194-80769213 | MsG0680034109.01.T01:CDS | 50.0% | |
| CACTGCACAAATGTGGCAGT+TGG | + | Chr6:80769222-80769241 | MsG0680034109.01.T01:CDS | 50.0% | |
| CATTAGGATCATCTCAGGGG+TGG | + | Chr6:80768719-80768738 | MsG0680034109.01.T01:intron | 50.0% | |
| GCTCGAATGGGTCAATTCCT+TGG | + | Chr6:80769248-80769267 | MsG0680034109.01.T01:CDS | 50.0% | |
| AGGATCATCTCAGGGGTGGA+AGG | + | Chr6:80768723-80768742 | MsG0680034109.01.T01:intron | 55.0% | |
| GGCAGTTGGGAAGCTCGAAT+GGG | + | Chr6:80769236-80769255 | MsG0680034109.01.T01:CDS | 55.0% | |
| TGGCAGTTGGGAAGCTCGAA+TGG | + | Chr6:80769235-80769254 | MsG0680034109.01.T01:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 80768480 | 80769280 | 80768480 | ID=MsG0680034109.01;Name=MsG0680034109.01 |
| Chr6 | mRNA | 80768480 | 80769280 | 80768480 | ID=MsG0680034109.01.T01;Parent=MsG0680034109.01;Name=MsG0680034109.01.T01;_AED=0.44;_eAED=0.44;_QI=0|0.75|0.6|1|0.5|0.6|5|0|101 |
| Chr6 | exon | 80769131 | 80769280 | 80769131 | ID=MsG0680034109.01.T01:exon:8313;Parent=MsG0680034109.01.T01 |
| Chr6 | exon | 80768961 | 80769048 | 80768961 | ID=MsG0680034109.01.T01:exon:8312;Parent=MsG0680034109.01.T01 |
| Chr6 | exon | 80768816 | 80768879 | 80768816 | ID=MsG0680034109.01.T01:exon:8311;Parent=MsG0680034109.01.T01 |
| Chr6 | exon | 80768480 | 80768483 | 80768480 | ID=MsG0680034109.01.T01:exon:8310;Parent=MsG0680034109.01.T01 |
| Chr6 | CDS | 80768480 | 80768483 | 80768480 | ID=MsG0680034109.01.T01:cds;Parent=MsG0680034109.01.T01 |
| Chr6 | CDS | 80768816 | 80768879 | 80768816 | ID=MsG0680034109.01.T01:cds;Parent=MsG0680034109.01.T01 |
| Chr6 | CDS | 80768961 | 80769048 | 80768961 | ID=MsG0680034109.01.T01:cds;Parent=MsG0680034109.01.T01 |
| Chr6 | CDS | 80769131 | 80769280 | 80769131 | ID=MsG0680034109.01.T01:cds;Parent=MsG0680034109.01.T01 |
| Gene Sequence |
| Protein sequence |
