Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015522.01.T01 | XP_024642201.2 | 81.279 | 219 | 40 | 1 | 4 | 221 | 209 | 427 | 8.92E-122 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015522.01.T01 | A0A072UAK7 | 81.279 | 219 | 40 | 1 | 4 | 221 | 209 | 427 | 4.26e-122 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380015521.01 | MsG0380015522.01 | 0.837724 | 4.389918e-57 | 5.753501e-54 |
| MsG0380015522.01 | MsG0380016059.01 | 0.824857 | 6.432286e-54 | 5.766947e-51 |
| MsG0380015522.01 | MsG0580024908.01 | 0.899512 | 1.841259e-77 | 2.284694e-73 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380015522.01.T01 | MTR_6g045333 | 81.279 | 219 | 40 | 1 | 4 | 221 | 209 | 427 | 1.08e-125 | 363 |
| MsG0380015522.01.T01 | MTR_3g071850 | 79.279 | 222 | 45 | 1 | 1 | 221 | 169 | 390 | 1.59e-118 | 357 |
| MsG0380015522.01.T01 | MTR_3g071790 | 83.168 | 202 | 33 | 1 | 1 | 201 | 1 | 202 | 5.39e-113 | 322 |
| MsG0380015522.01.T01 | MTR_5g045510 | 53.846 | 221 | 83 | 2 | 1 | 221 | 152 | 353 | 8.09e-68 | 213 |
| MsG0380015522.01.T01 | MTR_5g007410 | 52.232 | 224 | 102 | 3 | 1 | 221 | 168 | 389 | 8.29e-68 | 215 |
| MsG0380015522.01.T01 | MTR_5g045170 | 51.613 | 217 | 101 | 3 | 5 | 221 | 160 | 372 | 2.06e-64 | 205 |
| MsG0380015522.01.T01 | MTR_2g036470 | 50.885 | 226 | 98 | 5 | 1 | 220 | 158 | 376 | 4.25e-63 | 201 |
| MsG0380015522.01.T01 | MTR_0009s0080 | 51.905 | 210 | 99 | 2 | 1 | 209 | 161 | 369 | 5.23e-60 | 194 |
| MsG0380015522.01.T01 | MTR_5g039450 | 47.907 | 215 | 102 | 4 | 1 | 209 | 127 | 337 | 7.43e-53 | 174 |
| MsG0380015522.01.T01 | MTR_5g039470 | 46.890 | 209 | 102 | 4 | 1 | 204 | 124 | 328 | 8.18e-53 | 173 |
| MsG0380015522.01.T01 | MTR_5g063950 | 44.595 | 222 | 109 | 4 | 5 | 221 | 131 | 343 | 1.29e-52 | 173 |
| MsG0380015522.01.T01 | MTR_5g039490 | 47.059 | 221 | 85 | 4 | 1 | 221 | 169 | 357 | 8.45e-50 | 166 |
| MsG0380015522.01.T01 | MTR_1g059860 | 45.022 | 231 | 91 | 5 | 1 | 200 | 86 | 311 | 2.87e-49 | 164 |
| MsG0380015522.01.T01 | MTR_5g031970 | 42.793 | 222 | 97 | 5 | 1 | 221 | 145 | 337 | 1.01e-44 | 152 |
| MsG0380015522.01.T01 | MTR_7g026500 | 43.842 | 203 | 108 | 3 | 5 | 207 | 168 | 364 | 2.62e-43 | 150 |
| MsG0380015522.01.T01 | MTR_5g054920 | 40.659 | 182 | 102 | 2 | 26 | 207 | 2 | 177 | 1.01e-41 | 140 |
| MsG0380015522.01.T01 | MTR_5g073420 | 37.931 | 203 | 106 | 5 | 6 | 207 | 161 | 344 | 3.42e-36 | 131 |
| MsG0380015522.01.T01 | MTR_1g108800 | 41.860 | 215 | 93 | 8 | 5 | 207 | 115 | 309 | 3.49e-36 | 130 |
| MsG0380015522.01.T01 | MTR_5g058100 | 38.049 | 205 | 117 | 4 | 6 | 208 | 155 | 351 | 1.99e-35 | 129 |
| MsG0380015522.01.T01 | MTR_5g058000 | 40.196 | 204 | 105 | 4 | 6 | 207 | 153 | 341 | 4.32e-35 | 128 |
| MsG0380015522.01.T01 | MTR_1g108820 | 38.967 | 213 | 113 | 6 | 5 | 208 | 149 | 353 | 1.54e-34 | 127 |
| MsG0380015522.01.T01 | MTR_5g024060 | 44.805 | 154 | 83 | 2 | 56 | 208 | 27 | 179 | 1.79e-34 | 123 |
| MsG0380015522.01.T01 | MTR_5g024050 | 65.909 | 88 | 29 | 1 | 1 | 87 | 1 | 88 | 2.66e-33 | 116 |
| MsG0380015522.01.T01 | MTR_1g066830 | 38.049 | 205 | 121 | 3 | 6 | 208 | 154 | 354 | 1.28e-32 | 121 |
| MsG0380015522.01.T01 | MTR_4g039440 | 37.143 | 210 | 119 | 5 | 6 | 209 | 176 | 378 | 9.30e-31 | 117 |
| MsG0380015522.01.T01 | MTR_1089s0010 | 36.500 | 200 | 115 | 3 | 8 | 207 | 156 | 343 | 3.16e-30 | 115 |
| MsG0380015522.01.T01 | MTR_6g040270 | 35.437 | 206 | 115 | 5 | 6 | 207 | 154 | 345 | 4.92e-30 | 114 |
| MsG0380015522.01.T01 | MTR_1g085120 | 36.364 | 220 | 128 | 5 | 6 | 220 | 239 | 451 | 7.03e-30 | 115 |
| MsG0380015522.01.T01 | MTR_1g085120 | 36.364 | 220 | 128 | 5 | 6 | 220 | 314 | 526 | 1.22e-29 | 115 |
| MsG0380015522.01.T01 | MTR_6g022500 | 33.173 | 208 | 129 | 5 | 6 | 211 | 248 | 447 | 2.29e-29 | 114 |
| MsG0380015522.01.T01 | MTR_5g061410 | 42.282 | 149 | 82 | 2 | 1 | 149 | 124 | 268 | 4.40e-29 | 110 |
| MsG0380015522.01.T01 | MTR_5g073370 | 36.453 | 203 | 117 | 5 | 7 | 207 | 155 | 347 | 1.42e-28 | 110 |
| MsG0380015522.01.T01 | MTR_7g055943 | 35.023 | 217 | 121 | 6 | 6 | 212 | 187 | 393 | 2.20e-26 | 105 |
| MsG0380015522.01.T01 | MTR_5g065100 | 36.486 | 222 | 94 | 6 | 5 | 221 | 151 | 330 | 1.93e-25 | 103 |
| MsG0380015522.01.T01 | MTR_5g073340 | 38.764 | 178 | 99 | 6 | 5 | 176 | 127 | 300 | 2.37e-25 | 100 |
| MsG0380015522.01.T01 | MTR_3g107100 | 33.333 | 210 | 123 | 5 | 5 | 207 | 157 | 356 | 6.81e-25 | 101 |
| MsG0380015522.01.T01 | MTR_1377s0010 | 41.791 | 134 | 67 | 4 | 74 | 207 | 5 | 127 | 1.35e-24 | 94.7 |
| MsG0380015522.01.T01 | MTR_3g108560 | 32.710 | 214 | 119 | 6 | 6 | 208 | 158 | 357 | 7.06e-24 | 98.2 |
| MsG0380015522.01.T01 | MTR_7g098570 | 32.857 | 210 | 131 | 4 | 1 | 208 | 160 | 361 | 8.15e-24 | 99.0 |
| MsG0380015522.01.T01 | MTR_6g022520 | 35.669 | 157 | 94 | 3 | 56 | 212 | 136 | 285 | 1.08e-23 | 96.7 |
| MsG0380015522.01.T01 | MTR_7g034120 | 31.905 | 210 | 126 | 5 | 11 | 216 | 93 | 289 | 1.30e-23 | 96.3 |
| MsG0380015522.01.T01 | MTR_7g098510 | 32.864 | 213 | 127 | 3 | 1 | 208 | 158 | 359 | 6.44e-23 | 95.5 |
| MsG0380015522.01.T01 | MTR_3g107160 | 31.132 | 212 | 125 | 7 | 5 | 208 | 159 | 357 | 1.07e-22 | 95.1 |
| MsG0380015522.01.T01 | MTR_6g022360 | 31.905 | 210 | 126 | 4 | 5 | 207 | 176 | 375 | 1.13e-22 | 95.1 |
| MsG0380015522.01.T01 | MTR_2g007400 | 31.799 | 239 | 122 | 9 | 1 | 218 | 168 | 386 | 1.18e-22 | 95.1 |
| MsG0380015522.01.T01 | MTR_7g075820 | 31.193 | 218 | 122 | 9 | 10 | 220 | 178 | 374 | 1.58e-22 | 94.7 |
| MsG0380015522.01.T01 | MTR_6g011460 | 34.135 | 208 | 116 | 4 | 6 | 207 | 193 | 385 | 2.07e-22 | 94.7 |
| MsG0380015522.01.T01 | MTR_3g107120 | 34.272 | 213 | 115 | 8 | 5 | 207 | 167 | 364 | 2.19e-22 | 94.4 |
| MsG0380015522.01.T01 | MTR_4g098590 | 32.407 | 216 | 124 | 7 | 5 | 211 | 156 | 358 | 2.25e-22 | 94.0 |
| MsG0380015522.01.T01 | MTR_5g033200 | 37.654 | 162 | 86 | 6 | 62 | 220 | 13 | 162 | 2.28e-22 | 90.1 |
| MsG0380015522.01.T01 | MTR_7g033915 | 32.547 | 212 | 116 | 9 | 4 | 207 | 141 | 333 | 1.92e-21 | 91.3 |
| MsG0380015522.01.T01 | MTR_7g033990 | 30.769 | 208 | 120 | 7 | 6 | 207 | 162 | 351 | 2.28e-21 | 91.7 |
| MsG0380015522.01.T01 | MTR_7g007080 | 32.212 | 208 | 116 | 8 | 11 | 207 | 160 | 353 | 3.12e-21 | 90.9 |
| MsG0380015522.01.T01 | MTR_2g008310 | 33.482 | 224 | 120 | 8 | 10 | 221 | 151 | 357 | 3.80e-21 | 90.9 |
| MsG0380015522.01.T01 | MTR_7g098480 | 32.381 | 210 | 128 | 4 | 2 | 208 | 159 | 357 | 5.10e-21 | 90.9 |
| MsG0380015522.01.T01 | MTR_1g108820 | 38.312 | 154 | 83 | 4 | 5 | 149 | 149 | 299 | 8.02e-21 | 89.4 |
| MsG0380015522.01.T01 | MTR_3g095630 | 37.255 | 153 | 76 | 6 | 62 | 210 | 18 | 154 | 2.31e-20 | 85.1 |
| MsG0380015522.01.T01 | MTR_1g041245 | 33.645 | 214 | 118 | 10 | 6 | 208 | 155 | 355 | 3.39e-20 | 88.2 |
| MsG0380015522.01.T01 | MTR_7g115270 | 27.885 | 208 | 140 | 4 | 11 | 212 | 171 | 374 | 7.24e-20 | 87.0 |
| MsG0380015522.01.T01 | MTR_5g083890 | 31.878 | 229 | 114 | 10 | 11 | 220 | 177 | 382 | 7.63e-20 | 87.8 |
| MsG0380015522.01.T01 | MTR_7g056433 | 29.108 | 213 | 142 | 4 | 1 | 211 | 155 | 360 | 3.64e-19 | 85.1 |
| MsG0380015522.01.T01 | MTR_1g053025 | 29.630 | 216 | 129 | 8 | 5 | 207 | 156 | 361 | 1.77e-18 | 83.2 |
| MsG0380015522.01.T01 | MTR_2g007450 | 30.088 | 226 | 132 | 6 | 10 | 220 | 186 | 400 | 1.97e-18 | 83.2 |
| MsG0380015522.01.T01 | MTR_3g109982 | 31.925 | 213 | 120 | 7 | 6 | 208 | 246 | 443 | 3.44e-18 | 83.2 |
| MsG0380015522.01.T01 | MTR_7g056020 | 30.189 | 212 | 126 | 5 | 5 | 208 | 145 | 342 | 7.07e-18 | 82.0 |
| MsG0380015522.01.T01 | MTR_2g007360 | 29.778 | 225 | 114 | 10 | 10 | 207 | 137 | 344 | 8.62e-18 | 81.3 |
| MsG0380015522.01.T01 | MTR_5g044790 | 37.879 | 132 | 51 | 2 | 119 | 221 | 292 | 421 | 1.10e-17 | 81.3 |
| MsG0380015522.01.T01 | MTR_7g088260 | 29.596 | 223 | 129 | 6 | 6 | 221 | 234 | 435 | 1.14e-17 | 81.3 |
| MsG0380015522.01.T01 | MTR_5g008950 | 28.708 | 209 | 130 | 6 | 6 | 208 | 140 | 335 | 1.17e-17 | 80.9 |
| MsG0380015522.01.T01 | MTR_5g013500 | 27.313 | 227 | 142 | 8 | 1 | 212 | 119 | 337 | 1.18e-17 | 80.9 |
| MsG0380015522.01.T01 | MTR_7g032370 | 32.227 | 211 | 108 | 8 | 11 | 211 | 139 | 324 | 1.84e-17 | 80.1 |
| MsG0380015522.01.T01 | MTR_1g085120 | 38.000 | 150 | 83 | 4 | 6 | 150 | 326 | 470 | 2.48e-17 | 80.5 |
| MsG0380015522.01.T01 | MTR_7g007340 | 32.381 | 210 | 113 | 9 | 8 | 207 | 139 | 329 | 3.57e-17 | 79.3 |
| MsG0380015522.01.T01 | MTR_2g007500 | 30.412 | 194 | 114 | 7 | 1 | 182 | 146 | 330 | 4.74e-17 | 79.0 |
| MsG0380015522.01.T01 | MTR_0492s0020 | 31.163 | 215 | 116 | 6 | 6 | 208 | 224 | 418 | 8.40e-17 | 78.6 |
| MsG0380015522.01.T01 | MTR_0543s0010 | 31.163 | 215 | 116 | 6 | 6 | 208 | 224 | 418 | 1.09e-16 | 78.6 |
| MsG0380015522.01.T01 | MTR_7g056277 | 30.455 | 220 | 124 | 7 | 6 | 217 | 407 | 605 | 1.34e-16 | 78.6 |
| MsG0380015522.01.T01 | MTR_2g008320 | 29.091 | 220 | 129 | 7 | 10 | 217 | 205 | 409 | 1.73e-16 | 77.8 |
| MsG0380015522.01.T01 | MTR_2g005990 | 30.093 | 216 | 115 | 7 | 10 | 207 | 170 | 367 | 3.20e-16 | 77.0 |
| MsG0380015522.01.T01 | MTR_7g034115 | 29.064 | 203 | 127 | 6 | 11 | 207 | 160 | 351 | 3.88e-16 | 76.6 |
| MsG0380015522.01.T01 | MTR_3g036250 | 29.952 | 207 | 114 | 6 | 8 | 207 | 155 | 337 | 4.26e-16 | 76.3 |
| MsG0380015522.01.T01 | MTR_3g108150 | 31.163 | 215 | 121 | 8 | 7 | 208 | 155 | 355 | 5.65e-16 | 76.3 |
| MsG0380015522.01.T01 | MTR_7g032380 | 29.327 | 208 | 108 | 7 | 4 | 208 | 154 | 325 | 7.80e-16 | 75.5 |
| MsG0380015522.01.T01 | MTR_7g007370 | 33.962 | 212 | 109 | 10 | 6 | 205 | 123 | 315 | 7.81e-16 | 75.5 |
| MsG0380015522.01.T01 | MTR_1g107385 | 30.667 | 225 | 121 | 8 | 10 | 220 | 200 | 403 | 9.20e-16 | 75.5 |
| MsG0380015522.01.T01 | MTR_6g044572 | 30.476 | 210 | 109 | 6 | 6 | 209 | 176 | 354 | 1.37e-15 | 75.1 |
| MsG0380015522.01.T01 | MTR_6g044560 | 30.476 | 210 | 109 | 6 | 6 | 209 | 352 | 530 | 2.69e-15 | 74.7 |
| MsG0380015522.01.T01 | MTR_7g056287 | 30.769 | 221 | 122 | 8 | 6 | 217 | 151 | 349 | 3.12e-15 | 73.9 |
| MsG0380015522.01.T01 | MTR_7g083740 | 28.708 | 209 | 126 | 5 | 8 | 207 | 143 | 337 | 3.69e-15 | 73.6 |
| MsG0380015522.01.T01 | MTR_2g007090 | 31.081 | 222 | 118 | 9 | 4 | 218 | 84 | 277 | 3.91e-15 | 73.2 |
| MsG0380015522.01.T01 | MTR_5g008920 | 29.469 | 207 | 130 | 7 | 11 | 212 | 160 | 355 | 4.12e-15 | 73.6 |
| MsG0380015522.01.T01 | MTR_3g099830 | 28.704 | 216 | 124 | 9 | 6 | 207 | 147 | 346 | 5.25e-15 | 73.2 |
| MsG0380015522.01.T01 | MTR_5g076150 | 32.597 | 181 | 102 | 6 | 8 | 172 | 51 | 227 | 1.30e-14 | 70.9 |
| MsG0380015522.01.T01 | MTR_3g106960 | 32.867 | 143 | 70 | 7 | 76 | 208 | 46 | 172 | 1.69e-14 | 70.5 |
| MsG0380015522.01.T01 | MTR_3g026920 | 29.208 | 202 | 111 | 7 | 25 | 207 | 193 | 381 | 3.00e-14 | 71.2 |
| MsG0380015522.01.T01 | MTR_6g029350 | 31.694 | 183 | 98 | 10 | 34 | 207 | 6 | 170 | 3.83e-14 | 69.3 |
| MsG0380015522.01.T01 | MTR_3g023630 | 29.064 | 203 | 132 | 5 | 6 | 207 | 154 | 345 | 4.62e-14 | 70.5 |
| MsG0380015522.01.T01 | MTR_3g087260 | 30.144 | 209 | 129 | 6 | 6 | 208 | 228 | 425 | 7.23e-14 | 70.1 |
| MsG0380015522.01.T01 | MTR_7g060470 | 28.634 | 227 | 122 | 8 | 5 | 208 | 151 | 360 | 7.96e-14 | 70.1 |
| MsG0380015522.01.T01 | MTR_4g080610 | 25.676 | 222 | 153 | 4 | 6 | 221 | 124 | 339 | 7.33e-13 | 67.0 |
| MsG0380015522.01.T01 | MTR_5g012840 | 27.857 | 140 | 99 | 2 | 73 | 212 | 155 | 292 | 1.42e-12 | 65.9 |
| MsG0380015522.01.T01 | MTR_3g040700 | 26.633 | 199 | 120 | 4 | 6 | 200 | 191 | 367 | 2.48e-12 | 65.9 |
| MsG0380015522.01.T01 | MTR_8g085430 | 38.554 | 83 | 45 | 2 | 132 | 208 | 215 | 297 | 2.07e-11 | 62.8 |
| MsG0380015522.01.T01 | MTR_7g081290 | 29.565 | 115 | 72 | 2 | 101 | 208 | 117 | 229 | 4.81e-11 | 61.2 |
| MsG0380015522.01.T01 | MTR_7g022105 | 27.700 | 213 | 139 | 6 | 3 | 208 | 190 | 394 | 5.54e-11 | 61.6 |
| MsG0380015522.01.T01 | MTR_7g056420 | 27.014 | 211 | 140 | 6 | 10 | 212 | 133 | 337 | 6.10e-11 | 62.0 |
| MsG0380015522.01.T01 | MTR_7g056430 | 27.014 | 211 | 140 | 6 | 10 | 212 | 133 | 337 | 7.76e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGATAAATCGTCTAAAAT+TGG | 0.205589 | 3:-71370175 | None:intergenic |
| TAATTGAACTTCGACTATTT+TGG | 0.215548 | 3:+71369754 | MsG0380015522.01.T01:CDS |
| GGCCGACAAACCTTTGAAAT+TGG | 0.227619 | 3:-71369849 | None:intergenic |
| GATTTAAAGAAGCTTATATA+TGG | 0.299233 | 3:+71369137 | MsG0380015522.01.T01:CDS |
| ACAAATTCAGGAATGGTATA+CGG | 0.302502 | 3:-71370005 | None:intergenic |
| ATATGAATTGATTTCTTGAT+TGG | 0.308571 | 3:-71369703 | None:intergenic |
| AAATCGAAAGTCAGCTTCTA+AGG | 0.314485 | 3:-71370069 | None:intergenic |
| GGCTTTAATCAACTTGGATA+AGG | 0.336578 | 3:-71369243 | None:intergenic |
| AAGATAAATCGTCTAAAATT+GGG | 0.342716 | 3:-71370174 | None:intergenic |
| TATGCCAATTACTTCTATAG+TGG | 0.353731 | 3:-71370139 | None:intergenic |
| AAATCCACTATAGAAGTAAT+TGG | 0.359476 | 3:+71370135 | MsG0380015522.01.T01:CDS |
| AAATCGGATGAAACAAATTC+AGG | 0.361260 | 3:-71370017 | None:intergenic |
| GCTTTAATCAACTTGGATAA+GGG | 0.372624 | 3:-71369242 | None:intergenic |
| TCACATCAAGTGTCGGGGTC+GGG | 0.378715 | 3:+71369195 | MsG0380015522.01.T01:CDS |
| GTGCAATTTCTAACTAGAAC+AGG | 0.385853 | 3:+71369308 | MsG0380015522.01.T01:CDS |
| GTCGGGGTCGGGGTTACAAC+TGG | 0.396131 | 3:+71369206 | MsG0380015522.01.T01:CDS |
| TATGAATTGATTTCTTGATT+GGG | 0.407845 | 3:-71369702 | None:intergenic |
| TTGATCATTGCATTCATGAT+TGG | 0.409141 | 3:+71369778 | MsG0380015522.01.T01:CDS |
| AACATCGAATAAACGGATAT+TGG | 0.426532 | 3:-71369264 | None:intergenic |
| TTTCCAATCTTCAATTCCTC+TGG | 0.428396 | 3:-71369979 | None:intergenic |
| ATATGGGTGTCCCATATTAG+AGG | 0.444314 | 3:+71369154 | MsG0380015522.01.T01:CDS |
| ACATCTGATTGATGTTCGTT+TGG | 0.448794 | 3:+71369103 | MsG0380015522.01.T01:CDS |
| CATATGTCACATCAAGTGTC+GGG | 0.450423 | 3:+71369189 | MsG0380015522.01.T01:CDS |
| CTACCAGAGGAATTGAAGAT+TGG | 0.453219 | 3:+71369976 | MsG0380015522.01.T01:CDS |
| GGGGTCGGGGTTACAACTGG+AGG | 0.478098 | 3:+71369209 | MsG0380015522.01.T01:CDS |
| CACATCAAGTGTCGGGGTCG+GGG | 0.481164 | 3:+71369196 | MsG0380015522.01.T01:CDS |
| TGAGTGGAACATCGAATAAA+CGG | 0.481202 | 3:-71369271 | None:intergenic |
| ATGAATTGATTTCTTGATTG+GGG | 0.487037 | 3:-71369701 | None:intergenic |
| GATATTGGCTTTAATCAACT+TGG | 0.490561 | 3:-71369249 | None:intergenic |
| TAAAACTCTTCCAATTTCAA+AGG | 0.498202 | 3:+71369839 | MsG0380015522.01.T01:CDS |
| TTGCATTCATGATTGGTATG+AGG | 0.499072 | 3:+71369785 | MsG0380015522.01.T01:CDS |
| ATTTAAAGAAGCTTATATAT+GGG | 0.511161 | 3:+71369138 | MsG0380015522.01.T01:CDS |
| CAAATTCAGGAATGGTATAC+GGG | 0.524322 | 3:-71370004 | None:intergenic |
| GAAATCAATTCATATTATGA+AGG | 0.528032 | 3:+71369711 | MsG0380015522.01.T01:CDS |
| GTCACATCAAGTGTCGGGGT+CGG | 0.533563 | 3:+71369194 | MsG0380015522.01.T01:CDS |
| GCATATGTCACATCAAGTGT+CGG | 0.582260 | 3:+71369188 | MsG0380015522.01.T01:CDS |
| GGATGAAACAAATTCAGGAA+TGG | 0.584138 | 3:-71370012 | None:intergenic |
| TGCAATTTCTAACTAGAACA+GGG | 0.586331 | 3:+71369309 | MsG0380015522.01.T01:CDS |
| TAGAAGTAATTGGCATACAA+TGG | 0.588607 | 3:+71370145 | MsG0380015522.01.T01:CDS |
| TGTTCGTTTGGATGATATCG+AGG | 0.599352 | 3:+71369115 | MsG0380015522.01.T01:CDS |
| AGATAAATCGTCTAAAATTG+GGG | 0.616707 | 3:-71370173 | None:intergenic |
| GCAATTTCTAACTAGAACAG+GGG | 0.667904 | 3:+71369310 | MsG0380015522.01.T01:CDS |
| GGGTCGGGGTTACAACTGGA+GGG | 0.693812 | 3:+71369210 | MsG0380015522.01.T01:CDS |
| ATATGTCACATCAAGTGTCG+GGG | 0.697715 | 3:+71369190 | MsG0380015522.01.T01:CDS |
| ACAGGTTCATCTACTACCAG+AGG | 0.701589 | 3:+71369963 | MsG0380015522.01.T01:intron |
| ACATTAGAAACTGCTCTGAG+TGG | 0.718867 | 3:-71369287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAGTTTATTTATGT+TGG | + | Chr3:71369541-71369560 | MsG0380015522.01.T01:intron | 15.0% |
| !! | ATTTAAAGAAGCTTATATAT+GGG | + | Chr3:71369138-71369157 | MsG0380015522.01.T01:CDS | 15.0% |
| !! | TGAAAAAGTTTATTTATGTT+GGG | + | Chr3:71369542-71369561 | MsG0380015522.01.T01:intron | 15.0% |
| !!! | AAAATATTTTAGAGAGTTTA+GGG | + | Chr3:71369432-71369451 | MsG0380015522.01.T01:intron | 15.0% |
| !!! | TAAAATATTTTAGAGAGTTT+AGG | + | Chr3:71369431-71369450 | MsG0380015522.01.T01:intron | 15.0% |
| !! | GAAATCAATTCATATTATGA+AGG | + | Chr3:71369711-71369730 | MsG0380015522.01.T01:CDS | 20.0% |
| !! | GATTTAAAGAAGCTTATATA+TGG | + | Chr3:71369137-71369156 | MsG0380015522.01.T01:CDS | 20.0% |
| !! | TCATATTGTTTATCCATATA+TGG | + | Chr3:71369612-71369631 | MsG0380015522.01.T01:intron | 20.0% |
| !!! | AATTGGAAGAGTTTTAAATT+TGG | - | Chr3:71369835-71369854 | None:intergenic | 20.0% |
| !!! | AATTTTGCATGTTGTTAAAT+CGG | - | Chr3:71370036-71370055 | None:intergenic | 20.0% |
| !!! | ATATGAATTGATTTCTTGAT+TGG | - | Chr3:71369706-71369725 | None:intergenic | 20.0% |
| !!! | ATTGGAAGAGTTTTAAATTT+GGG | - | Chr3:71369834-71369853 | None:intergenic | 20.0% |
| !!! | TATGAATTGATTTCTTGATT+GGG | - | Chr3:71369705-71369724 | None:intergenic | 20.0% |
| !!! | TTTTAAATTTGGGACAATAA+TGG | - | Chr3:71369824-71369843 | None:intergenic | 20.0% |
| ! | AAATCCACTATAGAAGTAAT+TGG | + | Chr3:71370135-71370154 | MsG0380015522.01.T01:CDS | 25.0% |
| ! | TAAAACTCTTCCAATTTCAA+AGG | + | Chr3:71369839-71369858 | MsG0380015522.01.T01:CDS | 25.0% |
| ! | TAAACAATATGATTAAGTGC+CGG | - | Chr3:71369604-71369623 | None:intergenic | 25.0% |
| !! | AGTTTTCAAATCCTCTAATA+TGG | - | Chr3:71369168-71369187 | None:intergenic | 25.0% |
| !! | ATGAATTGATTTCTTGATTG+GGG | - | Chr3:71369704-71369723 | None:intergenic | 25.0% |
| !! | GTTTTCAAATCCTCTAATAT+GGG | - | Chr3:71369167-71369186 | None:intergenic | 25.0% |
| !! | TAATTGAACTTCGACTATTT+TGG | + | Chr3:71369754-71369773 | MsG0380015522.01.T01:CDS | 25.0% |
| !! | TCAATTATGTTTTCAAACAC+AGG | - | Chr3:71369741-71369760 | None:intergenic | 25.0% |
| !!! | GATGAAATATTGGTTTTTGT+TGG | + | Chr3:71369877-71369896 | MsG0380015522.01.T01:intron | 25.0% |
| !!! | TTAAAAAGCGTTTATGCATA+TGG | - | Chr3:71369414-71369433 | None:intergenic | 25.0% |
| AAATCGGATGAAACAAATTC+AGG | - | Chr3:71370020-71370039 | None:intergenic | 30.0% | |
| AACATCGAATAAACGGATAT+TGG | - | Chr3:71369267-71369286 | None:intergenic | 30.0% | |
| ACAAATTCAGGAATGGTATA+CGG | - | Chr3:71370008-71370027 | None:intergenic | 30.0% | |
| GCTTTAATCAACTTGGATAA+GGG | - | Chr3:71369245-71369264 | None:intergenic | 30.0% | |
| TAAAACCAAACAAGAGTCAT+AGG | - | Chr3:71369638-71369657 | None:intergenic | 30.0% | |
| TAGAAGTAATTGGCATACAA+TGG | + | Chr3:71370145-71370164 | MsG0380015522.01.T01:CDS | 30.0% | |
| TATGCCAATTACTTCTATAG+TGG | - | Chr3:71370142-71370161 | None:intergenic | 30.0% | |
| TGCAATTTCTAACTAGAACA+GGG | + | Chr3:71369309-71369328 | MsG0380015522.01.T01:CDS | 30.0% | |
| TTCCAATTTCAAAGGTTTGT+CGG | + | Chr3:71369847-71369866 | MsG0380015522.01.T01:intron | 30.0% | |
| TTGATCATTGCATTCATGAT+TGG | + | Chr3:71369778-71369797 | MsG0380015522.01.T01:CDS | 30.0% | |
| !! | GATATTGGCTTTAATCAACT+TGG | - | Chr3:71369252-71369271 | None:intergenic | 30.0% |
| !! | TGCAAGACTTTTAAAGGTTA+TGG | + | Chr3:71370112-71370131 | MsG0380015522.01.T01:CDS | 30.0% |
| !!! | TTTTTTTGGGTATGCAGATA+GGG | + | Chr3:71369670-71369689 | MsG0380015522.01.T01:intron | 30.0% |
| !!! | TTTTTTTTGGGTATGCAGAT+AGG | + | Chr3:71369669-71369688 | MsG0380015522.01.T01:intron | 30.0% |
| AAACCAATATTTCATCGACG+TGG | - | Chr3:71369873-71369892 | None:intergenic | 35.0% | |
| AAATCGAAAGTCAGCTTCTA+AGG | - | Chr3:71370072-71370091 | None:intergenic | 35.0% | |
| AAGCTAACTCAGTGAAAGTA+TGG | - | Chr3:71369500-71369519 | None:intergenic | 35.0% | |
| ACATCTGATTGATGTTCGTT+TGG | + | Chr3:71369103-71369122 | MsG0380015522.01.T01:CDS | 35.0% | |
| CAAATTCAGGAATGGTATAC+GGG | - | Chr3:71370007-71370026 | None:intergenic | 35.0% | |
| GCAATTTCTAACTAGAACAG+GGG | + | Chr3:71369310-71369329 | MsG0380015522.01.T01:CDS | 35.0% | |
| GGATGAAACAAATTCAGGAA+TGG | - | Chr3:71370015-71370034 | None:intergenic | 35.0% | |
| GTGCAATTTCTAACTAGAAC+AGG | + | Chr3:71369308-71369327 | MsG0380015522.01.T01:CDS | 35.0% | |
| TAAACACTCATATCCAAGTC+CGG | + | Chr3:71369582-71369601 | MsG0380015522.01.T01:intron | 35.0% | |
| TGAGTGGAACATCGAATAAA+CGG | - | Chr3:71369274-71369293 | None:intergenic | 35.0% | |
| TTGCATTCATGATTGGTATG+AGG | + | Chr3:71369785-71369804 | MsG0380015522.01.T01:CDS | 35.0% | |
| TTGTCAATCGGAGACAAAAT+AGG | - | Chr3:71369940-71369959 | None:intergenic | 35.0% | |
| TTTCCAATCTTCAATTCCTC+TGG | - | Chr3:71369982-71370001 | None:intergenic | 35.0% | |
| ! | ATTTTGTCTCCGATTGACAA+TGG | + | Chr3:71369940-71369959 | MsG0380015522.01.T01:intron | 35.0% |
| ! | GCAGAATGCAAGACTTTTAA+AGG | + | Chr3:71370106-71370125 | MsG0380015522.01.T01:CDS | 35.0% |
| ! | GGCTTTAATCAACTTGGATA+AGG | - | Chr3:71369246-71369265 | None:intergenic | 35.0% |
| ATATGGGTGTCCCATATTAG+AGG | + | Chr3:71369154-71369173 | MsG0380015522.01.T01:CDS | 40.0% | |
| CAAGAGTCATAGGCCATATA+TGG | - | Chr3:71369628-71369647 | None:intergenic | 40.0% | |
| CATATGTCACATCAAGTGTC+GGG | + | Chr3:71369189-71369208 | MsG0380015522.01.T01:CDS | 40.0% | |
| CTACCAGAGGAATTGAAGAT+TGG | + | Chr3:71369976-71369995 | MsG0380015522.01.T01:CDS | 40.0% | |
| GCATATGTCACATCAAGTGT+CGG | + | Chr3:71369188-71369207 | MsG0380015522.01.T01:CDS | 40.0% | |
| TATGGCCTATGACTCTTGTT+TGG | + | Chr3:71369630-71369649 | MsG0380015522.01.T01:intron | 40.0% | |
| TGAACCTGTCCATTGTCAAT+CGG | - | Chr3:71369952-71369971 | None:intergenic | 40.0% | |
| TGTTCGTTTGGATGATATCG+AGG | + | Chr3:71369115-71369134 | MsG0380015522.01.T01:CDS | 40.0% | |
| ! | ACATTAGAAACTGCTCTGAG+TGG | - | Chr3:71369290-71369309 | None:intergenic | 40.0% |
| ! | ATATGTCACATCAAGTGTCG+GGG | + | Chr3:71369190-71369209 | MsG0380015522.01.T01:CDS | 40.0% |
| !! | ATATGATTAAGTGCCGGACT+TGG | - | Chr3:71369598-71369617 | None:intergenic | 40.0% |
| ACAGGTTCATCTACTACCAG+AGG | + | Chr3:71369963-71369982 | MsG0380015522.01.T01:intron | 45.0% | |
| !! | GGCCGACAAACCTTTGAAAT+TGG | - | Chr3:71369852-71369871 | None:intergenic | 45.0% |
| !!! | ATAATATGTAATTTTTTTTT+GGG | + | Chr3:71369657-71369676 | MsG0380015522.01.T01:intron | 5.0% |
| !!! | TATAATATGTAATTTTTTTT+TGG | + | Chr3:71369656-71369675 | MsG0380015522.01.T01:intron | 5.0% |
| CGGCCACGTCGATGAAATAT+TGG | + | Chr3:71369867-71369886 | MsG0380015522.01.T01:intron | 50.0% | |
| GTCTCCGATTGACAATGGAC+AGG | + | Chr3:71369945-71369964 | MsG0380015522.01.T01:intron | 50.0% | |
| !! | GTCACATCAAGTGTCGGGGT+CGG | + | Chr3:71369194-71369213 | MsG0380015522.01.T01:CDS | 55.0% |
| !! | TCACATCAAGTGTCGGGGTC+GGG | + | Chr3:71369195-71369214 | MsG0380015522.01.T01:CDS | 55.0% |
| GGGTCGGGGTTACAACTGGA+GGG | + | Chr3:71369210-71369229 | MsG0380015522.01.T01:CDS | 60.0% | |
| !! | CACATCAAGTGTCGGGGTCG+GGG | + | Chr3:71369196-71369215 | MsG0380015522.01.T01:CDS | 60.0% |
| GGGGTCGGGGTTACAACTGG+AGG | + | Chr3:71369209-71369228 | MsG0380015522.01.T01:CDS | 65.0% | |
| GTCGGGGTCGGGGTTACAAC+TGG | + | Chr3:71369206-71369225 | MsG0380015522.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 71369062 | 71370184 | 71369062 | ID=MsG0380015522.01;Name=MsG0380015522.01 |
| Chr3 | mRNA | 71369062 | 71370184 | 71369062 | ID=MsG0380015522.01.T01;Parent=MsG0380015522.01;Name=MsG0380015522.01.T01;_AED=0.26;_eAED=0.26;_QI=0|0|0|1|1|1|3|0|221 |
| Chr3 | exon | 71369062 | 71369331 | 71369062 | ID=MsG0380015522.01.T01:exon:23765;Parent=MsG0380015522.01.T01 |
| Chr3 | exon | 71369687 | 71369864 | 71369687 | ID=MsG0380015522.01.T01:exon:23766;Parent=MsG0380015522.01.T01 |
| Chr3 | exon | 71369967 | 71370184 | 71369967 | ID=MsG0380015522.01.T01:exon:23767;Parent=MsG0380015522.01.T01 |
| Chr3 | CDS | 71369062 | 71369331 | 71369062 | ID=MsG0380015522.01.T01:cds;Parent=MsG0380015522.01.T01 |
| Chr3 | CDS | 71369687 | 71369864 | 71369687 | ID=MsG0380015522.01.T01:cds;Parent=MsG0380015522.01.T01 |
| Chr3 | CDS | 71369967 | 71370184 | 71369967 | ID=MsG0380015522.01.T01:cds;Parent=MsG0380015522.01.T01 |
| Gene Sequence |
| Protein sequence |
