AlfalfaGEDB | MsG0380015543.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015543.01

KEGG: -
GO: GO:0005515 GO:0043531
PFAM: PF00651 PF00931 PF04588

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015543.01.T01	AET01737.2	73.438	512	104	7	370	867	358	851	0	722

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015543.01.T01	V9M2S5	38.177	406	209	7	375	740	381	784	4.80E-70	256

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015543.01.T01	G7J2Y0	78.824	510	44	4	370	870	247	701	0.0	767

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TFs/TRs:

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Gene ID	Type	Classification
MsG0380015543.01.T01	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0180000556.01	MsG0380015543.01	0.830217	3.326358e-55	3.482385e-52
MsG0180005028.01	MsG0380015543.01	0.859375	4.319245e-63	1.138399e-59
MsG0280010669.01	MsG0380015543.01	0.814617	1.406473e-51	9.483082e-49
MsG0280010671.01	MsG0380015543.01	0.809157	2.173824e-50	1.266806e-47
MsG0380015543.01	MsG0680030288.01	0.845565	3.750863e-59	6.276281e-56

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsG0380015543.01.T01	MTR_3g072140	78.824	510	44	4	370	870	247	701	767
MsG0380015543.01.T01	MTR_8g020430	73.438	512	104	7	370	867	358	851	722
MsG0380015543.01.T01	MTR_8g012200	70.000	510	134	5	372	867	378	882	697
MsG0380015543.01.T01	MTR_8g011710	65.302	513	164	4	375	873	392	904	686
MsG0380015543.01.T01	MTR_8g011850	69.155	509	144	4	372	867	397	905	684
MsG0380015543.01.T01	MTR_8g073730	65.680	507	161	4	374	867	370	876	679
MsG0380015543.01.T01	MTR_8g011710	65.286	507	162	4	375	867	392	898	678
MsG0380015543.01.T01	MTR_8g012180	66.277	513	159	3	375	873	365	877	675
MsG0380015543.01.T01	MTR_8g012180	66.272	507	157	3	375	867	156	662	671
MsG0380015543.01.T01	MTR_8g012180	66.272	507	157	3	375	867	365	871	669

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015543.01.T01	AT5G36930	43.115	443	233	8	376	802	371	810	6.15e-99	334
MsG0380015543.01.T01	AT5G36930	43.115	443	233	8	376	802	374	813	9.06e-99	334
MsG0380015543.01.T01	AT5G36930	43.115	443	233	8	376	802	371	810	1.03e-98	334
MsG0380015543.01.T01	AT5G36930	43.115	443	233	8	376	802	371	810	1.03e-98	334
MsG0380015543.01.T01	AT5G17680	38.133	375	208	7	374	730	370	738	2.08e-63	233
MsG0380015543.01.T01	AT5G17680	38.133	375	208	7	374	730	369	737	2.12e-63	233
MsG0380015543.01.T01	AT1G27180	33.953	430	219	9	372	741	384	808	6.25e-59	219
MsG0380015543.01.T01	AT1G27180	33.724	427	224	8	372	741	208	632	9.57e-59	219
MsG0380015543.01.T01	AT1G27180	33.724	427	224	8	372	741	208	632	9.57e-59	219
MsG0380015543.01.T01	AT1G27180	33.724	427	224	8	372	741	208	632	9.57e-59	219

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Find 145 sgRNAs with CRISPR-Local

Find 483 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAGAACTCACCAAAA+CGG	0.553720	3:+71614410	None:intergenic
AAAAGATACAGGTGTAAAAG+AGG	0.544086	3:-71609591	MsG0380015543.01.T01:CDS
AAACAGTTCTGAGTTGTGAA+AGG	0.610573	3:+71609354	None:intergenic
AAACTAAGAATAAGCTATGA+CGG	0.568186	3:-71610965	MsG0380015543.01.T01:CDS
AACCAAGCTGCAAATTTGTC+TGG	0.424059	3:-71611690	MsG0380015543.01.T01:intron
AACCAGACAAATTTGCAGCT+TGG	0.480004	3:+71611688	None:intergenic
AAGACTATTCAGATCTCCAA+TGG	0.579623	3:+71609772	None:intergenic
AATAAGCTATGACGGTTTAA+AGG	0.288635	3:-71610957	MsG0380015543.01.T01:CDS
AATAAGTAATTTACCAATAC+TGG	0.346646	3:+71617570	None:intergenic
AATGTTGTTGCTTATTGTGG+AGG	0.606032	3:-71611100	MsG0380015543.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACAAGAACTCACCAAAA+CGG	+	Chr3:71612342-71612361	None:intergenic	30.0%
AAAACAATCACTACTCCAAA+TGG	-	Chr3:71612007-71612026	MsG0380015543.01.T01:intron	30.0%
AAAAGATACAGGTGTAAAAG+AGG	-	Chr3:71617158-71617177	MsG0380015543.01.T01:CDS	30.0%
AAAAGTGGTTACAACTTACA+AGG	-	Chr3:71611340-71611359	MsG0380015543.01.T01:intron	30.0%
AACAAGAAAAAAGAAGAAGC+AGG	+	Chr3:71613397-71613416	None:intergenic	30.0%
AACTAGTGAAGAAAAGACTT+TGG	-	Chr3:71615374-71615393	MsG0380015543.01.T01:intron	30.0%
AAGAGTTCTTGTGAGTATTA+AGG	+	Chr3:71610238-71610257	None:intergenic	30.0%
AATAAGCTATGACGGTTTAA+AGG	-	Chr3:71615792-71615811	MsG0380015543.01.T01:intron	30.0%
AATGATTCGTTAAATCTGAG+TGG	-	Chr3:71610701-71610720	MsG0380015543.01.T01:CDS	30.0%
AATTCTCAAATCGTTCTTTG+AGG	-	Chr3:71617523-71617542	MsG0380015543.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	71609139	71617632	71609139	ID=MsG0380015543.01;Name=MsG0380015543.01
Chr3	mRNA	71609139	71617632	71609139	ID=MsG0380015543.01.T01;Parent=MsG0380015543.01;Name=MsG0380015543.01.T01;_AED=0.45;_eAED=0.46;_QI=0\|0\|0\|0.88\|1\|1\|9\|0\|873
Chr3	exon	71617584	71617632	71617584	ID=MsG0380015543.01.T01:exon:658;Parent=MsG0380015543.01.T01
Chr3	exon	71617407	71617500	71617407	ID=MsG0380015543.01.T01:exon:657;Parent=MsG0380015543.01.T01
Chr3	exon	71617156	71617298	71617156	ID=MsG0380015543.01.T01:exon:656;Parent=MsG0380015543.01.T01
Chr3	exon	71614425	71614660	71614425	ID=MsG0380015543.01.T01:exon:655;Parent=MsG0380015543.01.T01
Chr3	exon	71613564	71613999	71613564	ID=MsG0380015543.01.T01:exon:654;Parent=MsG0380015543.01.T01
Chr3	exon	71611691	71611824	71611691	ID=MsG0380015543.01.T01:exon:653;Parent=MsG0380015543.01.T01
Chr3	exon	71610694	71611161	71610694	ID=MsG0380015543.01.T01:exon:652;Parent=MsG0380015543.01.T01
Chr3	exon	71610026	71610301	71610026	ID=MsG0380015543.01.T01:exon:651;Parent=MsG0380015543.01.T01
Chr3	exon	71609139	71609924	71609139	ID=MsG0380015543.01.T01:exon:650;Parent=MsG0380015543.01.T01
Chr3	CDS	71617584	71617632	71617584	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71617407	71617500	71617407	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71617156	71617298	71617156	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71614425	71614660	71614425	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71613564	71613999	71613564	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71611691	71611824	71611691	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71610694	71611161	71610694	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71610026	71610301	71610026	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01
Chr3	CDS	71609139	71609924	71609139	ID=MsG0380015543.01.T01:cds;Parent=MsG0380015543.01.T01

Gene Sequence

>MsG0380015543.01.T01

ATGGAAGCAATTCAATCATGGGTTTCAAAAAACAAACTCGCCAGTATTGGGGCACTTTGGGCATCTGGAATTGGAGCATCACTTATAGCTCATTCACGAGCTAAATCTCCAATGAAGCCAAGTCTAAGGCTTATCCATGCTAGGATGCACGCACAGGCGCTAACTCTAGCAGTGCTATCGGGTGCAGCTGCTTATCACTATTATGAGAATCGTGATGTTCATCAAATTACAGTGGTAGATGGTTCTGCTCCAAATGTGACTGAGCTAGTTGAATGGGAGCTCCACGTTTATAATCAAGTGTATAATCTAAAAGAGGCAATGAATGATATTATTTTTCCTCTGCAGACACTTGATGATTGCATAAGATGGTGTTCTGAGCAAATAGACCAATTTAATCAACAAAAACAAGATTTGGCTTATCTCAGAGGTTTTGCTGCTGCCTTCAAAGAACAAATTCACACAGATATATTGATAAGTCCAGGCAATCTTGGTCCACCTATACCTGCTCATAAATCCGTTTTGGCTGCAAGATCAGAAATTTTCAAGAATATGCTAGAGATTGATGAATGTAAAGCTGCACCAACTTGTAACACAATAACTCTACCTGACCTGAACCATGAAGAATTAGAATCTCTCTTAGAATTTCTCTACAGTGGGACATTGCCTTTGGAAAAATTGGAGAAACATGTGTATGCCTTGTCACAAGCAGCTGATAAGTATATTATCCCACATTTGCTGAAATACTGTGAAAGATATTTGTTCAGCTCACTTAGCACCTCTAATGCATTTGAGACACTAGAAATTGCTGATACTTGTTCAAACCAAGATTTGAAGGAGACATCCTTTAATTTCTTAGTTAAAAATATTGAGCATATGGTTACTTCTCCTAAATTTGAAGCATTTGTGCATAGGAGTCCGCATTTAACTGTGCAATTAGTTTCAAGAGCATTTGTGAATGTATTACCATCAATGTCTGCATACTCACCACCAGATTACAATCAACAATGGATATACGACGTTTTCATCAATTTTAGAGGCGAGGACACTCGTAAATTTGGAGGAGTGTGCTCAACCAAGCTGCAAATTTGTCTGAGAACCAAGTCCAACAAAATACTTAGTAAACTCTCTAGAAATGTTGTTGCTTATTGTGGAGGATTGCCACTTGCTCTTGAAATCCTTGGATCTTACTTATATGGAAGGACAGAAGGAGAATGGACAAGTGTATTGTCAAAACTAGAGAGAATTCCTAATGACCAAGTACAAAAGAAACTAAGAATAAGCTATGACGGTTTAAAGGATGATATGGAAACGGATATATTTCTTGACATATGTTGTTTCTTTATCGGTAAGGACAGGGCCTATGTTACCAAGATACTAAATGGGTGTGGACTTTATGCTGACATTGGAATAACGGTTCTCGTAGAACGAAGCCTTGTAAAAATTGAAAAGAATAACGAGCTTGCAATCCATGATCTGCTAAGAGACATGGGAAGAGAAATTGTCCGTCAGAGTTCAGCTAAAAATCCAGGGAACCGTAGTCGATTATGGTTTCATGAGGACGGAACAAAAAGTGTGGAGGGATTTACGTTTAAGTTGCAAAGAACTGACAGAGTTTGCTTCAGTACTAATTCTTTCGAGGAAATGAAGAAACTAAGACTTTTACAACTTGACTGTGTTAACCTCATTGGAGACTATGGATGTCTTTCCAATCAACTGAGATGGGTCAAATGGCAAGGATTTACTTTCAACAATATACCAAATGACTTTTATCAGGGAAATCTTGTTGCTATGGACTTAAAACGCAGCAATATTAGACAAGTTTGGAATGAAACAACGTTGCTGGAGAAGCTTAAATTTCTTAATCTCAGTCATTCTAAGTTCTTGAAAAACAGCCCCGACTTTTCAAAATTACCGAATCTAGAAAAGCTCATCATGGATTGTTCAAACTTGTCTGATATACACCAGTCCATTGGAGATCTGAATAGTCTTCTTCTGATAAATTTGAAGGACTGTACAAGTCTTAACAATCTCCCAAAGAAGATATATCAGTTGAAATCGTTGAAAACTCTCATCATTTCTGGTTGTTCAAAGATTGAAAACTTGGAAGAAGAAATAGTGCAAATGGAATCATTGACAACACTGATTGCAAAAGATACAGGTGTAAAAGAGGTGCCATATTCAATAGTAAGATCGAAAAGCATCGCGTATATATCTCTATGTGGATATGAAGGATTATCACATGATGTATTTCCCTCTCTCATTTGGTCTTGGATGTCACCAACAATGAATTCTCTACCTCGCGTTTCCCCATTTGGAAACATGGCTTTGTCTCTAACTTCCATCAATATACATAATGTGGGGTTTCTATCACCTGTGATCAAGAGCCTTTCACAACTCAGAACTGTTTGGGTACAATGCCGCTCAAAGATTCAACTAACTCAAGAGTTACGAAGAATGCTTGGTGGTCAATATGATGTGAACTTTACCAAATTGGAAACATCACATGCATCACAATTCTCAAATCGTTCTTTGAGGTCACTTTTGATTAGAATGGGAAGTTGCCACACAGTTATTGATACTCTTGGCAAGAGTATATCACAGTTTCCTTCTCTGTCTTCTTGA

Protein sequence

>MsG0380015543.01.T01

MEAIQSWVSKNKLASIGALWASGIGASLIAHSRAKSPMKPSLRLIHARMHAQALTLAVLSGAAAYHYYENRDVHQITVVDGSAPNVTELVEWELHVYNQVYNLKEAMNDIIFPLQTLDDCIRWCSEQIDQFNQQKQDLAYLRGFAAAFKEQIHTDILISPGNLGPPIPAHKSVLAARSEIFKNMLEIDECKAAPTCNTITLPDLNHEELESLLEFLYSGTLPLEKLEKHVYALSQAADKYIIPHLLKYCERYLFSSLSTSNAFETLEIADTCSNQDLKETSFNFLVKNIEHMVTSPKFEAFVHRSPHLTVQLVSRAFVNVLPSMSAYSPPDYNQQWIYDVFINFRGEDTRKFGGVCSTKLQICLRTKSNKILSKLSRNVVAYCGGLPLALEILGSYLYGRTEGEWTSVLSKLERIPNDQVQKKLRISYDGLKDDMETDIFLDICCFFIGKDRAYVTKILNGCGLYADIGITVLVERSLVKIEKNNELAIHDLLRDMGREIVRQSSAKNPGNRSRLWFHEDGTKSVEGFTFKLQRTDRVCFSTNSFEEMKKLRLLQLDCVNLIGDYGCLSNQLRWVKWQGFTFNNIPNDFYQGNLVAMDLKRSNIRQVWNETTLLEKLKFLNLSHSKFLKNSPDFSKLPNLEKLIMDCSNLSDIHQSIGDLNSLLLINLKDCTSLNNLPKKIYQLKSLKTLIISGCSKIENLEEEIVQMESLTTLIAKDTGVKEVPYSIVRSKSIAYISLCGYEGLSHDVFPSLIWSWMSPTMNSLPRVSPFGNMALSLTSINIHNVGFLSPVIKSLSQLRTVWVQCRSKIQLTQELRRMLGGQYDVNFTKLETSHASQFSNRSLRSLLIRMGSCHTVIDTLGKSISQFPSLSS*