AlfalfaGEDB | MsG0380015561.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015561.01

KEGG: -
GO: GO:0003677 GO:0003700 GO:0006355
PFAM: PF00847

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015561.01.T01	XP_003601066.1	96.818	220	4	2	1	217	1	220	3.44E-147	418

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015561.01.T01	Q9SFE4	50.242	207	61	9	25	216	50	229	1.63E-46	156

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015561.01.T01	G7J324	96.818	220	4	2	1	217	1	220	1.64e-147	418

TFs/TRs:

Gene ID	Type	Classification
MsG0380015561.01.T01	TF	AP2/ERF-ERF

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380015561.01	MsG0380015862.01	0.813732	2.205459e-51	1.451803e-48
MsG0380015561.01	MsG0480021859.01	0.812046	5.162827e-51	3.247775e-48
MsG0380015561.01	MsG0580025441.01	0.852244	5.243858e-61	1.088941e-57
MsG0380015561.01	MsG0880045477.01	0.803209	3.887493e-49	1.942101e-46
MsG0380015561.01	MsG0880047494.01	0.851526	8.382140e-61	1.701394e-57
MsG0280009108.01	MsG0380015561.01	0.810552	1.089382e-50	6.586447e-48
MsG0280009139.01	MsG0380015561.01	0.810138	1.337931e-50	8.001495e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015561.01.T01	MTR_3g072610	96.818	220	4	2	1	217	1	220	4.17e-151	418
MsG0380015561.01.T01	MTR_5g058470	59.836	244	64	10	1	216	60	297	3.61e-61	193
MsG0380015561.01.T01	MTR_1g014800	35.784	204	108	8	23	217	29	218	1.66e-30	112
MsG0380015561.01.T01	MTR_1g014860	38.660	194	99	6	20	193	17	210	1.26e-29	110
MsG0380015561.01.T01	MTR_1g014820	55.435	92	40	1	20	110	22	113	5.28e-29	109
MsG0380015561.01.T01	MTR_1g014780	36.842	190	100	7	20	191	33	220	2.17e-28	107
MsG0380015561.01.T01	MTR_5g008790	53.933	89	39	1	23	109	16	104	1.12e-26	100
MsG0380015561.01.T01	MTR_3g105510	51.613	93	44	1	19	110	31	123	5.43e-26	101
MsG0380015561.01.T01	MTR_2g043050	51.327	113	42	5	1	111	1	102	2.03e-25	99.0
MsG0380015561.01.T01	MTR_7g046260	52.041	98	40	3	7	102	43	135	1.11e-24	97.4
MsG0380015561.01.T01	MTR_6g088405	60.000	80	25	3	25	102	44	118	2.81e-24	96.3
MsG0380015561.01.T01	MTR_5g016750	46.465	99	48	2	10	105	10	106	4.50e-24	94.7
MsG0380015561.01.T01	MTR_2g101340	52.000	100	44	3	3	102	20	115	5.01e-24	95.1
MsG0380015561.01.T01	MTR_3g110205	51.042	96	43	3	16	110	33	125	6.48e-24	94.4
MsG0380015561.01.T01	MTR_5g012910	52.041	98	40	3	5	102	12	102	5.04e-23	91.7
MsG0380015561.01.T01	MTR_8g102800	47.917	96	46	3	7	102	20	111	9.90e-23	92.4
MsG0380015561.01.T01	MTR_1g019110	63.934	61	20	1	23	83	42	100	1.89e-22	90.5
MsG0380015561.01.T01	MTR_2g043030	34.348	230	109	10	1	216	1	202	1.94e-22	90.9
MsG0380015561.01.T01	MTR_3g105480	51.724	87	37	2	27	110	33	117	2.81e-22	91.3
MsG0380015561.01.T01	MTR_2g043040	43.066	137	56	5	1	130	1	122	3.50e-22	90.9
MsG0380015561.01.T01	MTR_6g465850	48.454	97	47	2	25	121	63	156	3.02e-21	89.4
MsG0380015561.01.T01	MTR_4g035430	46.847	111	52	3	3	109	6	113	6.39e-21	87.4
MsG0380015561.01.T01	MTR_4g114570	51.899	79	30	2	23	101	5	75	6.86e-21	87.0
MsG0380015561.01.T01	MTR_2g043020	45.133	113	49	3	1	111	1	102	6.94e-21	86.7
MsG0380015561.01.T01	MTR_4g100650	55.000	80	29	3	25	102	74	148	8.62e-21	87.8
MsG0380015561.01.T01	MTR_6g466130	42.056	107	59	2	6	112	47	150	1.08e-20	87.0
MsG0380015561.01.T01	MTR_7g117690	61.017	59	21	1	25	83	28	84	1.18e-20	85.5
MsG0380015561.01.T01	MTR_3g102100	58.065	62	24	1	22	83	42	101	1.19e-20	85.5
MsG0380015561.01.T01	MTR_8g013860	52.564	78	34	2	25	102	47	121	5.59e-20	84.3
MsG0380015561.01.T01	MTR_5g082950	58.065	62	26	0	19	80	60	121	1.28e-19	85.9
MsG0380015561.01.T01	MTR_8g006410	49.367	79	38	1	5	83	32	108	1.54e-19	83.2
MsG0380015561.01.T01	MTR_6g465530	43.269	104	54	3	11	112	17	117	1.75e-19	82.8
MsG0380015561.01.T01	MTR_6g465460	41.667	120	56	4	3	120	39	146	1.85e-19	84.3
MsG0380015561.01.T01	MTR_3g106290	55.738	61	27	0	22	82	5	65	2.80e-19	82.0
MsG0380015561.01.T01	MTR_8g092460	46.914	81	35	2	3	83	129	201	3.18e-19	84.3
MsG0380015561.01.T01	MTR_8g027465	59.322	59	22	1	25	83	39	95	4.99e-19	81.3
MsG0380015561.01.T01	MTR_4g008860	48.315	89	40	2	22	110	5	87	5.19e-19	81.6
MsG0380015561.01.T01	MTR_4g010640	55.556	63	26	1	23	85	5	65	6.10e-19	82.0
MsG0380015561.01.T01	MTR_2g103700	50.725	69	32	1	23	91	5	71	6.61e-19	80.9
MsG0380015561.01.T01	MTR_7g028925	58.209	67	24	2	20	85	24	87	8.20e-19	78.2
MsG0380015561.01.T01	MTR_7g021010	46.835	79	38	2	7	83	31	107	1.07e-18	80.5
MsG0380015561.01.T01	MTR_6g088425	56.471	85	34	2	25	109	49	130	1.16e-18	81.6
MsG0380015561.01.T01	MTR_1g028560	52.381	63	30	0	22	84	112	174	1.33e-18	83.2
MsG0380015561.01.T01	MTR_8g099215	33.831	201	122	4	2	202	88	277	1.35e-18	82.8
MsG0380015561.01.T01	MTR_7g011630	48.276	87	43	2	5	91	23	107	1.40e-18	84.0
MsG0380015561.01.T01	MTR_1g101600	28.636	220	113	6	4	217	20	201	1.72e-18	80.5
MsG0380015561.01.T01	MTR_6g465690	32.934	167	104	4	6	172	44	202	2.06e-18	81.3
MsG0380015561.01.T01	MTR_4g086165	48.611	72	35	1	24	95	81	150	2.53e-18	80.1
MsG0380015561.01.T01	MTR_2g078680	47.222	72	38	0	13	84	19	90	2.56e-18	80.1
MsG0380015561.01.T01	MTR_7g020980	46.835	79	38	2	7	83	31	107	3.54e-18	79.0
MsG0380015561.01.T01	MTR_3g053690	40.816	98	56	1	12	109	14	109	3.68e-18	80.1
MsG0380015561.01.T01	MTR_6g466000	37.391	115	65	3	6	118	38	147	3.78e-18	80.1
MsG0380015561.01.T01	MTR_6g465430	39.683	126	62	4	3	126	39	152	4.54e-18	80.1
MsG0380015561.01.T01	MTR_4g078710	46.053	76	40	1	8	83	12	86	6.30e-18	79.3
MsG0380015561.01.T01	MTR_4g086160	48.611	72	33	2	25	94	96	165	6.57e-18	79.3
MsG0380015561.01.T01	MTR_1g090170	55.738	61	25	1	23	83	150	208	8.24e-18	80.5
MsG0380015561.01.T01	MTR_1g090170	55.738	61	25	1	23	83	237	295	8.46e-18	81.3
MsG0380015561.01.T01	MTR_4g086220	55.000	60	25	1	25	84	96	153	8.85e-18	79.3
MsG0380015561.01.T01	MTR_1g006660	56.410	78	31	2	25	102	47	121	9.23e-18	79.7
MsG0380015561.01.T01	MTR_6g465420	35.659	129	63	3	3	126	39	152	1.16e-17	79.3
MsG0380015561.01.T01	MTR_4g086190	46.053	76	37	2	25	98	96	169	1.21e-17	79.0
MsG0380015561.01.T01	MTR_2g435590	50.000	68	32	1	20	87	91	156	1.43e-17	79.0
MsG0380015561.01.T01	MTR_8g090350	52.941	68	30	1	16	83	104	169	1.92e-17	79.3
MsG0380015561.01.T01	MTR_5g010910	34.337	166	94	7	1	154	24	186	2.07e-17	78.2
MsG0380015561.01.T01	MTR_2g089170	46.250	80	38	2	19	98	59	133	2.18e-17	77.0
MsG0380015561.01.T01	MTR_8g023680	34.302	172	96	5	2	167	91	251	2.61e-17	79.7
MsG0380015561.01.T01	MTR_2g014340	41.429	70	41	0	15	84	9	78	2.94e-17	77.0
MsG0380015561.01.T01	MTR_5g083340	53.968	63	27	1	21	83	81	141	3.92e-17	79.3
MsG0380015561.01.T01	MTR_7g021010	50.000	64	30	1	20	83	7	68	4.61e-17	75.1
MsG0380015561.01.T01	MTR_6g465510	46.465	99	46	3	25	121	33	126	5.01e-17	76.6
MsG0380015561.01.T01	MTR_1g048610	44.706	85	42	3	5	88	71	151	5.59e-17	77.0
MsG0380015561.01.T01	MTR_5g062700	49.315	73	33	2	11	83	161	229	7.21e-17	78.6
MsG0380015561.01.T01	MTR_2g090235	53.125	64	28	1	20	83	213	274	8.41e-17	78.6
MsG0380015561.01.T01	MTR_0939s0010	47.222	72	36	1	19	90	59	128	9.05e-17	75.9
MsG0380015561.01.T01	MTR_3g074130	55.738	61	25	1	23	83	148	206	1.01e-16	77.8
MsG0380015561.01.T01	MTR_7g092190	56.140	57	25	0	24	80	29	85	1.09e-16	77.0
MsG0380015561.01.T01	MTR_4g082345	44.186	86	44	2	21	104	44	127	1.11e-16	77.4
MsG0380015561.01.T01	MTR_6g465450	39.024	123	68	3	6	126	35	152	1.24e-16	76.3
MsG0380015561.01.T01	MTR_1g087920	33.028	109	63	3	1	101	53	159	1.46e-16	77.0
MsG0380015561.01.T01	MTR_3g090760	36.364	99	57	3	4	102	93	185	1.55e-16	77.4
MsG0380015561.01.T01	MTR_4g111915	39.423	104	59	3	4	107	33	132	3.21e-16	72.8
MsG0380015561.01.T01	MTR_8g069360	50.000	62	31	0	24	85	43	104	3.61e-16	76.6
MsG0380015561.01.T01	MTR_5g010940	42.202	109	53	4	25	126	54	159	3.64e-16	74.7
MsG0380015561.01.T01	MTR_5g075570	39.506	81	45	2	7	85	104	182	4.01e-16	75.5
MsG0380015561.01.T01	MTR_8g022820	47.692	65	32	1	22	86	121	183	4.16e-16	76.3
MsG0380015561.01.T01	MTR_8g022820	47.692	65	32	1	22	86	121	183	4.16e-16	76.3
MsG0380015561.01.T01	MTR_8g022820	47.692	65	32	1	22	86	120	182	4.31e-16	76.3
MsG0380015561.01.T01	MTR_2g105380	47.692	65	32	1	22	86	114	176	4.52e-16	76.3
MsG0380015561.01.T01	MTR_4g102670	50.000	78	35	3	25	102	15	88	4.86e-16	73.2
MsG0380015561.01.T01	MTR_5g085070	45.833	72	39	0	12	83	38	109	1.02e-15	74.3
MsG0380015561.01.T01	MTR_5g008590	39.310	145	67	5	25	162	11	141	1.12e-15	72.4
MsG0380015561.01.T01	MTR_5g009620	49.180	61	31	0	23	83	110	170	1.14e-15	74.7
MsG0380015561.01.T01	MTR_4g112490	39.806	103	58	3	5	107	34	132	1.24e-15	72.8
MsG0380015561.01.T01	MTR_5g010930	43.564	101	48	3	25	119	49	146	1.66e-15	72.8
MsG0380015561.01.T01	MTR_4g100420	50.000	66	30	2	20	84	152	215	1.81e-15	73.9
MsG0380015561.01.T01	MTR_5g032820	37.931	87	54	0	24	110	45	131	1.83e-15	74.3
MsG0380015561.01.T01	MTR_1g074230	53.030	66	28	2	19	83	13	76	1.87e-15	70.9
MsG0380015561.01.T01	MTR_2g085015	31.980	197	109	8	25	214	47	225	2.03e-15	72.8
MsG0380015561.01.T01	MTR_2g015040	46.575	73	33	3	12	83	53	120	2.80e-15	70.9
MsG0380015561.01.T01	MTR_5g083330	52.542	59	28	0	22	80	32	90	4.42e-15	72.8
MsG0380015561.01.T01	MTR_7g085810	45.333	75	41	0	6	80	11	85	4.97e-15	72.0
MsG0380015561.01.T01	MTR_7g096700	49.296	71	30	3	21	90	16	81	5.77e-15	69.7
MsG0380015561.01.T01	MTR_1g074310	52.459	61	26	2	24	83	20	78	5.90e-15	69.7
MsG0380015561.01.T01	MTR_6g012970	47.761	67	34	1	22	88	35	100	6.74e-15	73.2
MsG0380015561.01.T01	MTR_4g100450	50.000	64	29	2	22	84	151	212	6.82e-15	72.4
MsG0380015561.01.T01	MTR_3g107380	31.737	167	82	4	23	159	6	170	7.67e-15	70.9
MsG0380015561.01.T01	MTR_2g015050	41.111	90	45	3	3	91	117	199	7.67e-15	72.0
MsG0380015561.01.T01	MTR_2g019750	48.438	64	33	0	24	87	49	112	1.04e-14	71.6
MsG0380015561.01.T01	MTR_7g096750	52.459	61	26	2	24	83	19	77	1.33e-14	68.6
MsG0380015561.01.T01	MTR_5g085100	46.667	60	32	0	24	83	45	104	1.54e-14	71.2
MsG0380015561.01.T01	MTR_4g088005	49.315	73	31	3	12	83	47	114	2.07e-14	67.4
MsG0380015561.01.T01	MTR_2g438180	46.575	73	31	3	17	83	1	71	2.17e-14	67.8
MsG0380015561.01.T01	MTR_8g006815	51.613	62	27	2	23	83	94	153	2.70e-14	68.9
MsG0380015561.01.T01	MTR_6g466020	51.724	58	26	1	25	82	43	98	2.78e-14	68.6
MsG0380015561.01.T01	MTR_1g070070	43.243	74	39	2	11	83	7	78	3.22e-14	67.8
MsG0380015561.01.T01	MTR_4g054740	44.444	72	37	2	13	83	85	154	3.95e-14	69.3
MsG0380015561.01.T01	MTR_1g105400	31.724	145	78	3	8	149	106	232	4.99e-14	70.5
MsG0380015561.01.T01	MTR_2g014300	45.714	70	36	1	14	83	4	71	5.68e-14	67.8
MsG0380015561.01.T01	MTR_8g006840	47.222	72	35	2	20	90	120	189	5.86e-14	68.2
MsG0380015561.01.T01	MTR_7g081805	45.205	73	37	2	23	94	59	129	8.61e-14	67.8
MsG0380015561.01.T01	MTR_1g012470	46.000	100	31	4	22	117	4	84	1.34e-13	67.0
MsG0380015561.01.T01	MTR_8g085960	35.897	117	63	3	22	138	22	126	1.35e-13	67.8
MsG0380015561.01.T01	MTR_7g081815	50.000	62	28	2	23	83	59	118	1.38e-13	67.4
MsG0380015561.01.T01	MTR_8g032610	42.169	83	43	2	14	93	13	93	2.21e-13	68.2
MsG0380015561.01.T01	MTR_1g090290	44.615	65	33	2	23	86	111	173	2.47e-13	66.6
MsG0380015561.01.T01	MTR_1g110970	35.075	134	70	4	21	149	93	214	2.53e-13	68.2
MsG0380015561.01.T01	MTR_8g006825	46.774	62	30	2	23	83	94	153	3.44e-13	66.2
MsG0380015561.01.T01	MTR_2g016730	43.939	66	37	0	18	83	16	81	3.50e-13	67.8
MsG0380015561.01.T01	MTR_4g100380	49.254	67	31	2	23	88	143	207	3.71e-13	67.0
MsG0380015561.01.T01	MTR_4g054360	44.444	72	37	2	13	83	112	181	4.35e-13	67.0
MsG0380015561.01.T01	MTR_4g119270	37.647	85	50	1	24	108	52	133	4.79e-13	67.4
MsG0380015561.01.T01	MTR_4g054860	45.833	72	36	2	13	83	119	188	5.06e-13	66.6
MsG0380015561.01.T01	MTR_6g029180	41.096	73	43	0	8	80	16	88	6.36e-13	67.0
MsG0380015561.01.T01	MTR_5g008470	52.632	57	25	1	27	83	77	131	1.34e-12	64.3
MsG0380015561.01.T01	MTR_7g081795	46.774	62	30	2	23	83	58	117	1.37e-12	64.7
MsG0380015561.01.T01	MTR_7g084370	47.458	59	31	0	24	82	41	99	1.54e-12	65.5
MsG0380015561.01.T01	MTR_5g057810	49.180	61	30	1	4	64	68	127	3.20e-12	64.7
MsG0380015561.01.T01	MTR_5g057647	49.180	61	30	1	4	64	68	127	3.20e-12	64.7
MsG0380015561.01.T01	MTR_6g033255	48.352	91	40	3	10	98	3	88	3.61e-12	63.5
MsG0380015561.01.T01	MTR_1g097190	41.333	75	41	2	15	86	11	85	4.17e-12	62.0
MsG0380015561.01.T01	MTR_3g098580	47.368	76	38	1	13	88	64	137	5.86e-12	63.5
MsG0380015561.01.T01	MTR_8g023700	49.057	53	27	0	25	77	117	169	6.67e-12	64.3
MsG0380015561.01.T01	MTR_5g008550	59.322	59	22	1	25	83	21	77	7.60e-12	62.4
MsG0380015561.01.T01	MTR_1g070045	41.333	75	40	2	10	80	48	122	8.86e-12	61.6
MsG0380015561.01.T01	MTR_3g095190	41.935	93	41	2	2	83	136	226	1.85e-11	62.8
MsG0380015561.01.T01	MTR_1g070035	36.047	86	54	1	11	95	63	148	3.86e-11	60.8
MsG0380015561.01.T01	MTR_4g102660	44.706	85	41	4	1	82	21	102	4.30e-11	60.8
MsG0380015561.01.T01	MTR_1g101550	53.165	79	33	3	24	102	56	130	4.69e-11	60.8
MsG0380015561.01.T01	MTR_3g112440	38.849	139	70	4	1	128	5	139	8.71e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015561.01.T01	AT1G21910	50.242	207	61	9	25	216	50	229	1.67e-47	156
MsG0380015561.01.T01	AT1G44830	51.707	205	63	9	23	217	33	211	1.64e-34	122
MsG0380015561.01.T01	AT1G77640	46.262	214	86	7	23	217	41	244	4.80e-32	117
MsG0380015561.01.T01	AT1G74930	49.038	104	50	2	11	114	7	107	8.24e-28	104
MsG0380015561.01.T01	AT4G06746	48.182	110	50	3	1	106	13	119	1.14e-26	100
MsG0380015561.01.T01	AT1G19210	34.615	208	100	7	18	216	5	185	6.35e-26	99.8
MsG0380015561.01.T01	AT2G44940	48.305	118	52	3	25	142	100	208	2.46e-25	100
MsG0380015561.01.T01	AT2G35700	46.617	133	59	5	20	149	40	163	2.52e-25	98.2
MsG0380015561.01.T01	AT2G23340	55.056	89	33	2	23	106	26	112	2.94e-25	97.4
MsG0380015561.01.T01	AT1G71520	39.735	151	75	5	14	160	3	141	8.00e-25	95.5
MsG0380015561.01.T01	AT5G25810	48.182	110	50	4	2	110	15	118	1.25e-24	97.1
MsG0380015561.01.T01	AT5G11590	46.296	108	55	2	3	110	29	133	2.15e-24	97.1
MsG0380015561.01.T01	AT4G16750	48.544	103	46	3	2	102	17	114	2.20e-24	95.5
MsG0380015561.01.T01	AT5G67190	51.807	83	38	1	23	105	19	99	4.22e-24	94.7
MsG0380015561.01.T01	AT4G36900	67.213	61	18	1	23	83	28	86	9.13e-24	94.4
MsG0380015561.01.T01	AT3G16280	60.256	78	28	2	25	102	61	135	9.28e-24	95.1
MsG0380015561.01.T01	AT3G16280	60.256	78	28	2	25	102	79	153	1.01e-23	95.5
MsG0380015561.01.T01	AT1G22810	49.438	89	43	1	21	109	10	96	1.04e-23	92.8
MsG0380015561.01.T01	AT4G32800	45.872	109	50	3	1	109	1	100	1.33e-23	94.4
MsG0380015561.01.T01	AT3G60490	51.923	104	44	4	1	102	46	145	2.15e-23	94.7
MsG0380015561.01.T01	AT3G50260	47.826	92	40	3	16	105	12	97	2.22e-23	92.0
MsG0380015561.01.T01	AT4G31060	37.255	153	63	4	19	159	21	152	9.79e-23	91.3
MsG0380015561.01.T01	AT5G21960	51.136	88	36	3	24	109	6	88	1.66e-22	91.3
MsG0380015561.01.T01	AT1G46768	46.988	83	40	2	3	83	7	87	1.68e-22	89.4
MsG0380015561.01.T01	AT1G46768	46.988	83	40	2	3	83	7	87	1.75e-22	89.7
MsG0380015561.01.T01	AT1G46768	46.988	83	40	2	3	83	7	87	1.75e-22	89.7
MsG0380015561.01.T01	AT4G25470	50.549	91	42	2	25	115	51	138	2.45e-22	90.9
MsG0380015561.01.T01	AT5G51990	42.857	105	57	2	10	114	39	140	9.16e-22	89.7
MsG0380015561.01.T01	AT4G25490	47.573	103	51	2	25	127	48	147	3.79e-21	87.8
MsG0380015561.01.T01	AT2G25820	50.476	105	46	4	25	129	26	124	4.04e-21	87.8
MsG0380015561.01.T01	AT1G01250	38.816	152	78	6	25	165	45	192	9.01e-21	86.3
MsG0380015561.01.T01	AT4G25480	52.222	90	40	2	25	114	51	137	2.46e-20	85.9
MsG0380015561.01.T01	AT5G25390	55.072	69	29	1	23	91	5	71	7.12e-20	84.0
MsG0380015561.01.T01	AT1G12610	38.393	112	66	2	1	112	6	114	8.07e-20	84.3
MsG0380015561.01.T01	AT5G61890	47.826	92	37	4	18	101	83	171	2.26e-19	84.0
MsG0380015561.01.T01	AT1G15360	58.065	62	24	1	23	84	5	64	4.14e-19	82.0
MsG0380015561.01.T01	AT1G15360	58.065	62	24	1	23	84	5	64	4.14e-19	82.0
MsG0380015561.01.T01	AT4G27950	50.769	65	32	0	16	80	109	173	7.75e-19	83.6
MsG0380015561.01.T01	AT4G13620	46.341	82	36	2	2	83	215	288	1.11e-18	83.6
MsG0380015561.01.T01	AT1G63030	41.509	106	58	3	8	112	12	114	1.32e-18	80.1
MsG0380015561.01.T01	AT1G63030	41.509	106	58	3	8	112	12	114	1.32e-18	80.1
MsG0380015561.01.T01	AT2G22200	43.478	92	44	2	7	98	53	136	1.38e-18	82.0
MsG0380015561.01.T01	AT1G71450	53.846	78	33	2	25	102	24	98	1.81e-18	80.1
MsG0380015561.01.T01	AT1G03800	44.565	92	46	3	2	92	29	116	2.60e-18	80.9
MsG0380015561.01.T01	AT5G47230	50.000	76	35	2	10	84	141	214	2.87e-18	81.6
MsG0380015561.01.T01	AT5G25190	54.098	61	28	0	22	82	5	65	3.42e-18	79.3
MsG0380015561.01.T01	AT5G53290	47.222	72	37	1	10	80	109	180	5.27e-18	81.6
MsG0380015561.01.T01	AT5G51190	45.455	77	39	2	17	92	64	138	5.84e-18	79.3
MsG0380015561.01.T01	AT4G39780	53.125	64	28	1	20	83	88	149	5.98e-18	80.5
MsG0380015561.01.T01	AT1G36060	52.113	71	32	1	13	83	131	199	8.29e-18	80.5
MsG0380015561.01.T01	AT5G65130	48.052	77	35	3	23	98	111	183	9.27e-18	80.1
MsG0380015561.01.T01	AT5G65130	48.052	77	35	3	23	98	109	181	9.50e-18	80.1
MsG0380015561.01.T01	AT1G77200	56.410	78	31	2	25	102	43	117	1.10e-17	79.3
MsG0380015561.01.T01	AT1G72360	41.837	98	48	3	10	104	58	149	2.12e-17	78.6
MsG0380015561.01.T01	AT2G33710	50.000	66	31	1	18	83	63	126	2.23e-17	78.2
MsG0380015561.01.T01	AT5G13330	51.613	62	28	1	22	83	36	95	2.30e-17	77.8
MsG0380015561.01.T01	AT2G33710	50.000	66	31	1	18	83	63	126	2.50e-17	77.8
MsG0380015561.01.T01	AT1G22190	55.738	61	25	1	23	83	81	139	3.21e-17	78.2
MsG0380015561.01.T01	AT2G20880	53.125	64	28	1	20	83	182	243	3.60e-17	79.0
MsG0380015561.01.T01	AT3G61630	52.308	65	31	0	23	87	103	167	3.65e-17	79.0
MsG0380015561.01.T01	AT4G23750	30.806	211	130	7	2	208	100	298	4.73e-17	79.0
MsG0380015561.01.T01	AT4G23750	30.806	211	130	7	2	208	100	298	4.73e-17	79.0
MsG0380015561.01.T01	AT5G44210	51.562	64	29	1	25	88	33	94	5.56e-17	76.3
MsG0380015561.01.T01	AT1G33760	55.682	88	36	2	25	112	20	104	6.82e-17	75.9
MsG0380015561.01.T01	AT3G57600	49.296	71	31	1	10	80	18	83	7.90e-17	77.4
MsG0380015561.01.T01	AT5G25390	52.174	69	28	2	23	91	5	68	8.30e-17	75.5
MsG0380015561.01.T01	AT4G17490	47.945	73	35	2	13	84	125	195	8.30e-17	77.4
MsG0380015561.01.T01	AT1G72360	42.391	92	44	3	16	104	13	98	8.46e-17	76.3
MsG0380015561.01.T01	AT2G47520	49.180	61	29	1	25	85	50	108	9.62e-17	75.1
MsG0380015561.01.T01	AT1G78080	55.738	61	25	1	23	83	150	208	9.65e-17	77.8
MsG0380015561.01.T01	AT4G28140	54.098	61	26	1	23	83	141	199	1.18e-16	77.0
MsG0380015561.01.T01	AT1G72360	42.391	92	44	3	16	104	62	147	1.49e-16	76.3
MsG0380015561.01.T01	AT3G16770	44.048	84	41	3	2	83	56	135	1.60e-16	76.3
MsG0380015561.01.T01	AT3G15210	44.000	75	39	2	9	80	6	80	1.86e-16	75.5
MsG0380015561.01.T01	AT4G11140	49.180	61	29	1	23	83	85	143	2.53e-16	76.3
MsG0380015561.01.T01	AT5G19790	44.444	81	43	1	5	83	2	82	2.89e-16	75.5
MsG0380015561.01.T01	AT3G11020	48.611	72	35	1	19	90	72	141	3.89e-16	76.3
MsG0380015561.01.T01	AT1G75490	48.000	75	34	1	19	88	36	110	1.08e-15	73.2
MsG0380015561.01.T01	AT2G46310	42.254	71	41	0	24	94	98	168	1.08e-15	74.3
MsG0380015561.01.T01	AT5G61600	53.968	63	26	2	23	84	86	146	1.27e-15	73.6
MsG0380015561.01.T01	AT2G36450	54.667	75	30	3	25	98	15	86	3.26e-15	71.2
MsG0380015561.01.T01	AT1G28370	44.928	69	31	2	24	92	19	80	5.96e-15	70.1
MsG0380015561.01.T01	AT2G40340	46.575	73	34	1	8	80	2	69	6.60e-15	72.0
MsG0380015561.01.T01	AT2G40340	46.575	73	34	1	8	80	2	69	6.60e-15	72.0
MsG0380015561.01.T01	AT2G40340	46.575	73	34	1	8	80	2	69	6.60e-15	72.0
MsG0380015561.01.T01	AT5G05410	45.070	71	37	1	19	89	73	141	6.91e-15	72.8
MsG0380015561.01.T01	AT5G05410	45.070	71	37	1	19	89	73	141	7.49e-15	72.4
MsG0380015561.01.T01	AT1G28370	44.928	69	31	2	24	92	57	118	7.51e-15	70.9
MsG0380015561.01.T01	AT1G28360	44.286	70	39	0	16	85	3	72	8.51e-15	70.5
MsG0380015561.01.T01	AT1G12980	46.875	64	34	0	20	83	52	115	1.15e-14	72.0
MsG0380015561.01.T01	AT5G11190	48.913	92	37	3	23	107	5	93	1.66e-14	69.7
MsG0380015561.01.T01	AT2G40340	46.575	73	34	1	8	80	60	127	1.75e-14	71.2
MsG0380015561.01.T01	AT2G40340	46.575	73	34	1	8	80	60	127	1.90e-14	71.2
MsG0380015561.01.T01	AT1G24590	43.662	71	38	1	24	92	57	127	2.04e-14	71.2
MsG0380015561.01.T01	AT2G40340	46.575	73	34	1	8	80	67	134	2.09e-14	71.2
MsG0380015561.01.T01	AT3G23230	46.970	66	32	2	19	83	14	77	2.23e-14	68.2
MsG0380015561.01.T01	AT1G71130	45.588	68	32	1	21	83	75	142	2.25e-14	68.6
MsG0380015561.01.T01	AT1G43160	45.631	103	44	2	9	111	45	135	2.38e-14	69.3
MsG0380015561.01.T01	AT2G40220	53.521	71	33	0	10	80	40	110	2.48e-14	70.9
MsG0380015561.01.T01	AT1G50640	45.714	70	35	2	16	84	18	85	2.57e-14	69.7
MsG0380015561.01.T01	AT1G22985	47.761	67	32	1	20	83	70	136	2.88e-14	68.2
MsG0380015561.01.T01	AT2G40350	45.455	77	35	2	8	84	62	131	2.94e-14	68.2
MsG0380015561.01.T01	AT5G18450	44.737	76	37	1	8	83	22	92	3.26e-14	70.5
MsG0380015561.01.T01	AT2G40350	45.455	77	35	2	8	84	55	124	3.29e-14	68.2
MsG0380015561.01.T01	AT4G17500	43.529	85	41	3	9	88	128	210	3.91e-14	69.7
MsG0380015561.01.T01	AT1G12890	38.776	98	56	2	1	98	1	94	6.75e-14	68.6
MsG0380015561.01.T01	AT5G47220	44.872	78	40	2	23	99	115	190	7.89e-14	68.6
MsG0380015561.01.T01	AT2G44840	46.154	78	37	4	24	99	91	165	8.43e-14	68.2
MsG0380015561.01.T01	AT3G20310	46.875	64	32	1	24	87	26	87	8.84e-14	68.6
MsG0380015561.01.T01	AT5G43410	50.820	61	27	2	24	83	14	72	9.22e-14	66.2
MsG0380015561.01.T01	AT1G68550	58.333	48	20	0	22	69	110	157	1.60e-13	68.6
MsG0380015561.01.T01	AT1G68550	58.333	48	20	0	22	69	110	157	1.60e-13	68.6
MsG0380015561.01.T01	AT5G07310	55.385	65	27	1	22	86	89	151	2.02e-13	67.8
MsG0380015561.01.T01	AT5G13910	42.105	76	36	1	15	82	2	77	8.18e-13	65.5
MsG0380015561.01.T01	AT1G28160	49.123	57	29	0	24	80	38	94	9.58e-13	65.9
MsG0380015561.01.T01	AT5G18560	45.614	57	31	0	24	80	54	110	9.89e-13	66.6
MsG0380015561.01.T01	AT3G23240	46.970	66	32	2	18	82	75	138	5.97e-12	63.2
MsG0380015561.01.T01	AT2G31230	40.541	74	41	2	12	84	73	144	1.36e-11	62.4
MsG0380015561.01.T01	AT1G12630	50.617	81	33	4	20	97	11	87	2.13e-11	61.2
MsG0380015561.01.T01	AT5G50080	54.839	62	26	1	22	83	83	142	2.15e-11	61.6
MsG0380015561.01.T01	AT5G50080	45.882	85	41	2	2	83	51	133	2.18e-11	61.6
MsG0380015561.01.T01	AT5G52020	33.333	183	103	7	25	206	65	229	4.54e-11	60.8
MsG0380015561.01.T01	AT5G64750	50.000	52	24	1	32	83	192	241	4.69e-11	62.0

Find 27 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTATGATATCGGAAACTAAT+TGG	0.290571	3:+71882141	MsG0380015561.01.T01:CDS
ACTAATTGGTATGGATTAGA+AGG	0.299088	3:+71882155	MsG0380015561.01.T01:CDS
GAATGAGGAGTTGGGGTTCA+TGG	0.300208	3:+71881739	MsG0380015561.01.T01:CDS
GCAACTCTTTGAATTGATTT+CGG	0.314642	3:-71881945	None:intergenic
AACATCTGATCAACATATTT+AGG	0.316828	3:-71882188	None:intergenic
CTATCTGAGATTGAATTTGA+TGG	0.319152	3:-71881690	None:intergenic
TAATGTGAAGATGCTGTTAA+AGG	0.350309	3:-71881900	None:intergenic
AGGAGTAAGAATGAGGAGTT+GGG	0.383877	3:+71881731	MsG0380015561.01.T01:CDS
AAGGAGTAAGAATGAGGAGT+TGG	0.457971	3:+71881730	MsG0380015561.01.T01:CDS
AATGAGGAGTTGGGGTTCAT+GGG	0.458646	3:+71881740	MsG0380015561.01.T01:CDS
GATTCATCATCACATTTGCT+TGG	0.459026	3:+71882236	MsG0380015561.01.T01:CDS
TGAATCGATGGCTATGATAT+CGG	0.476439	3:+71882130	MsG0380015561.01.T01:CDS
AGTGTCATCTCCATCATCAA+TGG	0.483926	3:+71882055	MsG0380015561.01.T01:CDS
AAGAAAGTGACATTCCTTTG+TGG	0.498615	3:+71882273	MsG0380015561.01.T01:CDS
TCAGAAGAAACCATTGATGA+TGG	0.502228	3:-71882065	None:intergenic
ATATCGGAAACTAATTGGTA+TGG	0.502252	3:+71882146	MsG0380015561.01.T01:CDS
AATGTGAAGATGCTGTTAAA+GGG	0.512314	3:-71881899	None:intergenic
AGTACAAAGGAGTAAGAATG+AGG	0.534167	3:+71881724	MsG0380015561.01.T01:CDS
AAGTGCAGCATCATAAGCTC+TGG	0.543771	3:-71881835	None:intergenic
TGACACTAATGATGATGAAG+AGG	0.585483	3:-71882039	None:intergenic
GATTTCGGAGACATATCTTG+AGG	0.585721	3:-71881930	None:intergenic
GTTGTCAGTGAAACTATTCG+CGG	0.586861	3:-71881976	None:intergenic
AGTAGCAAGAAGAAGTACAA+AGG	0.601213	3:+71881711	MsG0380015561.01.T01:CDS
CTTCAGCTGAAGTTCCACAA+AGG	0.608471	3:-71882287	None:intergenic
TCTAGTTAACGATGAATCGA+TGG	0.611388	3:+71882118	MsG0380015561.01.T01:CDS
GACACTAATGATGATGAAGA+GGG	0.644399	3:-71882038	None:intergenic
GGAGTAAGAATGAGGAGTTG+GGG	0.708849	3:+71881732	MsG0380015561.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	CAAATCAAAAAACAAGAATT+TGG	+	Chr3:71881781-71881800	MsG0380015561.01.T01:CDS	20.0%
!!!	CAAATTCTTGTTTTTTGATT+TGG	-	Chr3:71881783-71881802	None:intergenic	20.0%
!	AACATCTGATCAACATATTT+AGG	-	Chr3:71882191-71882210	None:intergenic	25.0%
!	CAAAAAACAAGAATTTGGTT+AGG	+	Chr3:71881786-71881805	MsG0380015561.01.T01:CDS	25.0%
	AATGTGAAGATGCTGTTAAA+GGG	-	Chr3:71881902-71881921	None:intergenic	30.0%
	ATATCGGAAACTAATTGGTA+TGG	+	Chr3:71882146-71882165	MsG0380015561.01.T01:CDS	30.0%
	CTATGATATCGGAAACTAAT+TGG	+	Chr3:71882141-71882160	MsG0380015561.01.T01:CDS	30.0%
	TAATGTGAAGATGCTGTTAA+AGG	-	Chr3:71881903-71881922	None:intergenic	30.0%
!	CTATCTGAGATTGAATTTGA+TGG	-	Chr3:71881693-71881712	None:intergenic	30.0%
!	GCAACTCTTTGAATTGATTT+CGG	-	Chr3:71881948-71881967	None:intergenic	30.0%
!!	ACTAATTGGTATGGATTAGA+AGG	+	Chr3:71882155-71882174	MsG0380015561.01.T01:CDS	30.0%
	AAGAAAGTGACATTCCTTTG+TGG	+	Chr3:71882273-71882292	MsG0380015561.01.T01:CDS	35.0%
	AGTACAAAGGAGTAAGAATG+AGG	+	Chr3:71881724-71881743	MsG0380015561.01.T01:CDS	35.0%
	GATTCATCATCACATTTGCT+TGG	+	Chr3:71882236-71882255	MsG0380015561.01.T01:CDS	35.0%
	TCAGAAGAAACCATTGATGA+TGG	-	Chr3:71882068-71882087	None:intergenic	35.0%
	TCTAGTTAACGATGAATCGA+TGG	+	Chr3:71882118-71882137	MsG0380015561.01.T01:CDS	35.0%
	TGAATCGATGGCTATGATAT+CGG	+	Chr3:71882130-71882149	MsG0380015561.01.T01:CDS	35.0%
!	AGTAGCAAGAAGAAGTACAA+AGG	+	Chr3:71881711-71881730	MsG0380015561.01.T01:CDS	35.0%
!	GACACTAATGATGATGAAGA+GGG	-	Chr3:71882041-71882060	None:intergenic	35.0%
!	GCTGCACTTTTATGTCTTAA+AGG	+	Chr3:71881849-71881868	MsG0380015561.01.T01:CDS	35.0%
!	TGACACTAATGATGATGAAG+AGG	-	Chr3:71882042-71882061	None:intergenic	35.0%
	AAGGAGTAAGAATGAGGAGT+TGG	+	Chr3:71881730-71881749	MsG0380015561.01.T01:CDS	40.0%
	AGGAGTAAGAATGAGGAGTT+GGG	+	Chr3:71881731-71881750	MsG0380015561.01.T01:CDS	40.0%
	AGTGTCATCTCCATCATCAA+TGG	+	Chr3:71882055-71882074	MsG0380015561.01.T01:CDS	40.0%
	GATTTCGGAGACATATCTTG+AGG	-	Chr3:71881933-71881952	None:intergenic	40.0%
	GTTGTCAGTGAAACTATTCG+CGG	-	Chr3:71881979-71881998	None:intergenic	40.0%
	AAGTGCAGCATCATAAGCTC+TGG	-	Chr3:71881838-71881857	None:intergenic	45.0%
	AATGAGGAGTTGGGGTTCAT+GGG	+	Chr3:71881740-71881759	MsG0380015561.01.T01:CDS	45.0%
	GGAGTAAGAATGAGGAGTTG+GGG	+	Chr3:71881732-71881751	MsG0380015561.01.T01:CDS	45.0%
	GAATGAGGAGTTGGGGTTCA+TGG	+	Chr3:71881739-71881758	MsG0380015561.01.T01:CDS	50.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	71881654	71882307	71881654	ID=MsG0380015561.01;Name=MsG0380015561.01
Chr3	mRNA	71881654	71882307	71881654	ID=MsG0380015561.01.T01;Parent=MsG0380015561.01;Name=MsG0380015561.01.T01;_AED=0.45;_eAED=0.45;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|217
Chr3	exon	71881654	71882307	71881654	ID=MsG0380015561.01.T01:exon:23850;Parent=MsG0380015561.01.T01
Chr3	CDS	71881654	71882307	71881654	ID=MsG0380015561.01.T01:cds;Parent=MsG0380015561.01.T01

Gene Sequence

>MsG0380015561.01.T01

ATGGTTAAGTCAGAGACTAACAAGATAAAAAAAGAACCATCAAATTCAATCTCAGATAGTAGCAAGAAGAAGTACAAAGGAGTAAGAATGAGGAGTTGGGGTTCATGGGTATCAGAGATTAGAGCACCAAATCAAAAAACAAGAATTTGGTTAGGTTCTTATTCAACTGCAGAAGCAGCAGCCAGAGCTTATGATGCTGCACTTTTATGTCTTAAAGGTTCATCATCTGCATCAAATCTCAATTTCCCTTTAACAGCATCTTCACATTACAATATTCCTCAAGATATGTCTCCGAAATCAATTCAAAGAGTTGCTGCAGCTGCCGCGAATAGTTTCACTGACAACAATAATGTTAATGTTAATGTCAATGATAATGTTAACACTCCCTCTTCATCATCATTAGTGTCATCTCCATCATCAATGGTTTCTTCTGATGATGTTTCTTCACTTATGTCATCTTTCGATCTAGTTAACGATGAATCGATGGCTATGATATCGGAAACTAATTGGTATGGATTAGAAGGTTTACAATCTCCTAAATATGTTGATCAGATGTTGTTAAGTGCTTCTTTCTTTGATATTGATTCATCATCACATTTGCTTGGTGATGATCTCTATGAAGAAAGTGACATTCCTTTGTGGAACTTCAGCTGA

Protein sequence

>MsG0380015561.01.T01

MVKSETNKIKKEPSNSISDSSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSSASNLNFPLTASSHYNIPQDMSPKSIQRVAAAAANSFTDNNNVNVNVNDNVNTPSSSSLVSSPSSMVSSDDVSSLMSSFDLVNDESMAMISETNWYGLEGLQSPKYVDQMLLSASFFDIDSSSHLLGDDLYEESDIPLWNFS*