AlfalfaGEDB | MsG0380015597.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015597.01

KEGG: K22074
GO: GO:0005506 GO:0016226 GO:0051536
PFAM: PF01106 PF08712

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015597.01.T01	XP_003601103.1	93.772	289	4	1	2	290	1	275	0	551

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015597.01.T01	Q9LIG6	78.829	222	33	1	67	288	72	279	3.00E-127	366

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015597.01.T01	G7J3M0	93.772	289	4	1	2	290	1	275	0.0	551

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
MsG0380015802.01	MsG0380015597.01	PPI
MsG0580027139.01	MsG0380015597.01	PPI
MsG0880045119.01	MsG0380015597.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015597.01.T01	MTR_3g073070	93.772	289	4	1	2	290	1	275	0.0	551
MsG0380015597.01.T01	MTR_3g073070	90.909	275	11	1	2	276	1	261	0.0	510
MsG0380015597.01.T01	MTR_1g069215	87.973	291	19	2	2	290	1	277	7.27e-155	433

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015597.01.T01	AT3G20970	78.829	222	33	1	67	288	72	279	3.05e-128	366
MsG0380015597.01.T01	AT1G51390	69.020	255	44	3	27	281	48	267	4.40e-122	350
MsG0380015597.01.T01	AT3G20970	84.106	151	24	0	67	217	72	222	9.73e-93	274

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Find 106 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCCGTATTGCATGACA+AGG	0.673795	3:-72361658	None:intergenic
AAAATGCAAGGAGCGTGTAG+TGG	0.619177	3:+72360524	MsG0380015597.01.T01:CDS
AAACATAGTCCTCCTTTGTC+CGG	0.524701	3:-72358519	None:intergenic
AAATATAATAAGTTGCGAGT+TGG	0.522998	3:+72361226	MsG0380015597.01.T01:three_prime_UTR
AAATGGAGAAGAAAATGGTG+AGG	0.700803	3:-72358492	None:intergenic
AACATAAGAGACTCTGGATT+TGG	0.370612	3:-72358560	None:intergenic
AACCGTACAAGATGATGGTG+GGG	0.626230	3:+72360103	MsG0380015597.01.T01:CDS
AAGAGACTCTGGATTTGGAG+TGG	0.639473	3:-72358555	None:intergenic
AAGTGCAAGGCATCATTATT+TGG	0.261746	3:+72361409	MsG0380015597.01.T01:three_prime_UTR
AATTGCTGTGTCTTTGGATG+AGG	0.544084	3:-72358941	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACACCAACACTGTAT+TGG	-	Chr3:72360372-72360391	None:intergenic	30.0%
AAAAAACAGGATGTGGAAAT+TGG	-	Chr3:72356268-72356287	None:intergenic	30.0%
AATCAACTTAAGAATGCCAT+AGG	-	Chr3:72360758-72360777	None:intergenic	30.0%
AATGAAATACAAAGCCTGAA+TGG	+	Chr3:72359715-72359734	MsG0380015597.01.T01:intron	30.0%
AATGTTAGGAACTCAAGAAT+TGG	+	Chr3:72356858-72356877	MsG0380015597.01.T01:intron	30.0%
AATTTCAGAGTTCAAATCCT+AGG	+	Chr3:72359477-72359496	MsG0380015597.01.T01:intron	30.0%
ATAATAGCAGCAAAGATTTC+AGG	-	Chr3:72358874-72358893	None:intergenic	30.0%
ATATACGAACAATCTTCCTA+AGG	-	Chr3:72357696-72357715	None:intergenic	30.0%
ATCGTCAAACTTAAAATGCA+AGG	+	Chr3:72360512-72360531	MsG0380015597.01.T01:CDS	30.0%
ATCTCACTAGAATAGTATGA+TGG	+	Chr3:72361293-72361312	MsG0380015597.01.T01:three_prime_UTR	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	72356049	72361747	72356049	ID=MsG0380015597.01;Name=MsG0380015597.01
Chr3	mRNA	72356049	72361747	72356049	ID=MsG0380015597.01.T01;Parent=MsG0380015597.01;Name=MsG0380015597.01.T01;_AED=0.37;_eAED=0.38;_QI=98\|0.8\|0.83\|1\|0.8\|0.66\|6\|607\|290
Chr3	exon	72356049	72356079	72356049	ID=MsG0380015597.01.T01:exon:24005;Parent=MsG0380015597.01.T01
Chr3	exon	72358247	72358683	72358247	ID=MsG0380015597.01.T01:exon:24006;Parent=MsG0380015597.01.T01
Chr3	exon	72358794	72358969	72358794	ID=MsG0380015597.01.T01:exon:24007;Parent=MsG0380015597.01.T01
Chr3	exon	72360047	72360150	72360047	ID=MsG0380015597.01.T01:exon:24008;Parent=MsG0380015597.01.T01
Chr3	exon	72360460	72360613	72360460	ID=MsG0380015597.01.T01:exon:24009;Parent=MsG0380015597.01.T01
Chr3	exon	72361072	72361747	72361072	ID=MsG0380015597.01.T01:exon:24010;Parent=MsG0380015597.01.T01
Chr3	five_prime_UTR	72356049	72356079	72356049	ID=MsG0380015597.01.T01:five_prime_utr;Parent=MsG0380015597.01.T01
Chr3	five_prime_UTR	72358247	72358313	72358247	ID=MsG0380015597.01.T01:five_prime_utr;Parent=MsG0380015597.01.T01
Chr3	CDS	72358314	72358683	72358314	ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3	CDS	72358794	72358969	72358794	ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3	CDS	72360047	72360150	72360047	ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3	CDS	72360460	72360613	72360460	ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3	CDS	72361072	72361140	72361072	ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3	three_prime_UTR	72361141	72361747	72361141	ID=MsG0380015597.01.T01:three_prime_utr;Parent=MsG0380015597.01.T01

Gene Sequence

>MsG0380015597.01.T01

ATGATGACAGTAGTGAGGGGTAGTGTTTTCCGATTAGGAAGACGATTACGACTAGGAATCTTAAATTCCCTCAAACCAGAGACTAATCACAATAATCTAAATACAAATTGTTCTCGCTGCCTGGGCGCAACACCGTCGTTTCAACCTCGCAACCACAATGCCTTTTTCTCTTCCTCCGCCTCACCATTTTCTTCTCCATTTTCCACCGGACAAAGGAGGACTATGTTTATCCAAACACAGTCCACTCCAAATCCAGAGTCTCTTATGTTTCATCCTGGTAAACCTGTCATGGATGTTGGTAGCGCCGATTTCCCGAACCCTCGTTCCGCCATGAATTCTCCTCTCGCTAAATCAATTTTCACGATTGACGGAATTACTCGTGTTTTCTTTGGATCCGATTTTGTCACTGTTACCAAATCAGAAGATGCATCATGGGAATTTCTGAAGCCTGAAATCTTTGCTGCTATTATGGATTTCTACTCTTCTGGTGAACCGCTCTTTCTAGATTCTCAAGCTGCCTCATCCAAAGACACAGCAATTCACGATGATGATTCTGAAACAGTTGCGATGATCAAGGAACTTTTGGAGACTCGTATTCGACCAACCGTACAAGATGATGGTGGGGACATTGTATATTGTGGTTTTGATCCAATGGCTCTTTTACTTGCTTTTTATATTGTGGTTTTCTCTAGAGATACGGGGATCGTCAAACTTAAAATGCAAGGAGCGTGTAGTGGCTGCCCAAGTTCTTCGGTGACTCTGAAGTCAGGCATTGAGAATATGCTGATGCATTATGTACCTGAGGTCAAAGGTGTGGAACAAGAATTAGATGGCGAGGAAGAGGAAGCAGCTTTAAGTGGACAAACTGAGTAG

Protein sequence

>MsG0380015597.01.T01

MMTVVRGSVFRLGRRLRLGILNSLKPETNHNNLNTNCSRCLGATPSFQPRNHNAFFSSSASPFSSPFSTGQRRTMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFTIDGITRVFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAASSKDTAIHDDDSETVAMIKELLETRIRPTVQDDGGDIVYCGFDPMALLLAFYIVVFSRDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDGEEEEAALSGQTE*