AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015597.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015597.01.T01 MTR_3g073070 93.772 289 4 1 2 290 1 275 0.0 551
MsG0380015597.01.T01 MTR_3g073070 90.909 275 11 1 2 276 1 261 0.0 510
MsG0380015597.01.T01 MTR_1g069215 87.973 291 19 2 2 290 1 277 7.27e-155 433
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015597.01.T01 AT3G20970 78.829 222 33 1 67 288 72 279 3.05e-128 366
MsG0380015597.01.T01 AT1G51390 69.020 255 44 3 27 281 48 267 4.40e-122 350
MsG0380015597.01.T01 AT3G20970 84.106 151 24 0 67 217 72 222 9.73e-93 274

Find 106 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAATCTTTGCTGCTATTA+TGG 0.182790 3:+72358873 MsG0380015597.01.T01:CDS
TGCGATGATCAAGGAACTTT+TGG 0.229879 3:+72360064 MsG0380015597.01.T01:CDS
GCCTTGGCTGCTACGGTTCT+TGG 0.232756 3:+72361369 MsG0380015597.01.T01:three_prime_UTR
TGGCTATTGGCATTGTATTC+AGG 0.246213 3:+72361429 MsG0380015597.01.T01:three_prime_UTR
ATTATGGATTTCTACTCTTC+TGG 0.249208 3:+72358889 MsG0380015597.01.T01:CDS
AAGTGCAAGGCATCATTATT+TGG 0.261746 3:+72361409 MsG0380015597.01.T01:three_prime_UTR
CTCCTTTGTCCGGTGGAAAA+TGG 0.263576 3:-72358509 None:intergenic
CCATGATGCATCTTCTGATT+TGG 0.274955 3:-72358836 None:intergenic
AGGCATCATTATTTGGCTAT+TGG 0.312388 3:+72361416 MsG0380015597.01.T01:three_prime_UTR
TACAAATTGTTCTCGCTGCC+TGG 0.324938 3:+72358415 MsG0380015597.01.T01:CDS
ACTTGTATTGATATAAGATT+TGG 0.335121 3:+72361456 MsG0380015597.01.T01:three_prime_UTR
ATCGTGAATTGCTGTGTCTT+TGG 0.348943 3:-72358947 None:intergenic
ATAATAGCAGCAAAGATTTC+AGG 0.354714 3:-72358871 None:intergenic
GTCGTAATCGTCTTCCTAAT+CGG 0.363079 3:-72358343 None:intergenic
AACATAAGAGACTCTGGATT+TGG 0.370612 3:-72358560 None:intergenic
TTCATGGCGGAACGAGGGTT+CGG 0.372119 3:-72358626 None:intergenic
GGAACGAGGGTTCGGGAAAT+CGG 0.374726 3:-72358618 None:intergenic
ATCAACGCCCCAATGTTATC+TGG 0.374780 3:-72361617 None:intergenic
GATTTGGAGTGGACTGTGTT+TGG 0.376256 3:-72358544 None:intergenic
CGCCCCAATGTTATCTGGCT+TGG 0.386441 3:-72361612 None:intergenic
GTGATTAGTCTCTGGTTTGA+GGG 0.396383 3:-72358381 None:intergenic
TGAGGCGGAGGAAGAGAAAA+AGG 0.403424 3:-72358474 None:intergenic
GTGGAAAATGGAGAAGAAAA+TGG 0.410126 3:-72358497 None:intergenic
TCATGGCGGAACGAGGGTTC+GGG 0.411326 3:-72358625 None:intergenic
GTAACAATAACAACGTCGTT+TGG 0.414384 3:+72358237 MsG0380015597.01.T01:intron
TGTGATTAGTCTCTGGTTTG+AGG 0.424340 3:-72358382 None:intergenic
TCTCCAAGCCAGATAACATT+GGG 0.428538 3:+72361609 MsG0380015597.01.T01:three_prime_UTR
TTTAGCGAGAGGAGAATTCA+TGG 0.440507 3:-72358642 None:intergenic
TTCAGAGTCACCGAAGAACT+TGG 0.442159 3:-72360551 None:intergenic
ATTGCATGACAAGGTCAGTT+TGG 0.442662 3:-72361649 None:intergenic
AGATTATTGTGATTAGTCTC+TGG 0.463457 3:-72358389 None:intergenic
TACTGTCATCATTCACGATC+TGG 0.467139 3:-72358303 None:intergenic
TAGTGGCTGCCCAAGTTCTT+CGG 0.469327 3:+72360541 MsG0380015597.01.T01:CDS
TTTGGTAACAGTGACAAAAT+CGG 0.476499 3:-72358818 None:intergenic
AGAATTAGATGGCGAGGAAG+AGG 0.486982 3:+72361089 MsG0380015597.01.T01:CDS
TCTTCGGTGACTCTGAAGTC+AGG 0.490374 3:+72360557 MsG0380015597.01.T01:CDS
CCAAATCAGAAGATGCATCA+TGG 0.493924 3:+72358836 MsG0380015597.01.T01:CDS
GAGGCATAATAAATGTTTGA+AGG 0.494068 3:-72361733 None:intergenic
GGTGGGGACATTGTATATTG+TGG 0.499614 3:+72360119 MsG0380015597.01.T01:CDS
GAAACGACGGTGTTGCGCCC+AGG 0.501477 3:-72358433 None:intergenic
TAGGTACCCTCTATCAGCCT+TGG 0.504814 3:+72361353 MsG0380015597.01.T01:three_prime_UTR
ACAAATTGTTCTCGCTGCCT+GGG 0.514356 3:+72358416 MsG0380015597.01.T01:CDS
ATGGATGTATGTGCATGTTA+AGG 0.517922 3:+72361505 MsG0380015597.01.T01:three_prime_UTR
AAATATAATAAGTTGCGAGT+TGG 0.522998 3:+72361226 MsG0380015597.01.T01:three_prime_UTR
AGAAGAAAATGGTGAGGCGG+AGG 0.523186 3:-72358486 None:intergenic
ACTGACCTTGTCATGCAATA+CGG 0.523765 3:+72361653 MsG0380015597.01.T01:three_prime_UTR
AAACATAGTCCTCCTTTGTC+CGG 0.524701 3:-72358519 None:intergenic
CAAATCAGAAGATGCATCAT+GGG 0.526297 3:+72358837 MsG0380015597.01.T01:CDS
GTAGCAGCCAAGGCTGATAG+AGG 0.529222 3:-72361360 None:intergenic
GAAGAGGAAGCAGCTTTAAG+TGG 0.530262 3:+72361105 MsG0380015597.01.T01:CDS
GTGAAAATTGATTTAGCGAG+AGG 0.538554 3:-72358653 None:intergenic
ACCAAGAACCGTAGCAGCCA+AGG 0.538625 3:-72361370 None:intergenic
GGATGAAACATAAGAGACTC+TGG 0.539372 3:-72358566 None:intergenic
ACATCCATGACAGGTTTACC+AGG 0.541119 3:-72358587 None:intergenic
TGAAACAGTTGCGATGATCA+AGG 0.541980 3:+72360055 MsG0380015597.01.T01:CDS
TCTATCAGCCTTGGCTGCTA+CGG 0.542410 3:+72361362 MsG0380015597.01.T01:three_prime_UTR
AATTGCTGTGTCTTTGGATG+AGG 0.544084 3:-72358941 None:intergenic
TCCTTCTGAATCAAAGTGCA+AGG 0.548336 3:+72361396 MsG0380015597.01.T01:three_prime_UTR
CGACCAACCGTACAAGATGA+TGG 0.554420 3:+72360098 MsG0380015597.01.T01:CDS
GCCTTGCACTTTGATTCAGA+AGG 0.554509 3:-72361397 None:intergenic
TTCTCCAAGCCAGATAACAT+TGG 0.555901 3:+72361608 MsG0380015597.01.T01:three_prime_UTR
ATAACAACGTCGTTTGGAGC+AGG 0.557707 3:+72358243 MsG0380015597.01.T01:intron
TATTCTAGTGAGATCTAACT+AGG 0.561073 3:-72361284 None:intergenic
CCACCATCATCTTGTACGGT+TGG 0.561935 3:-72360101 None:intergenic
ATCGTCAAACTTAAAATGCA+AGG 0.563819 3:+72360512 MsG0380015597.01.T01:CDS
TTGCTGCATTTACAGGTCAA+AGG 0.565990 3:+72361057 MsG0380015597.01.T01:intron
CTAGTGAGATCTAACTAGGC+CGG 0.569636 3:-72361280 None:intergenic
GTCCCCACCATCATCTTGTA+CGG 0.570518 3:-72360105 None:intergenic
GAGTCTCTTATGTTTCATCC+TGG 0.574002 3:+72358569 MsG0380015597.01.T01:CDS
ATCTCACTAGAATAGTATGA+TGG 0.582915 3:+72361293 MsG0380015597.01.T01:three_prime_UTR
CAACCGTACAAGATGATGGT+GGG 0.584792 3:+72360102 MsG0380015597.01.T01:CDS
AGTACAACAGCAGTACATGA+TGG 0.585615 3:+72361176 MsG0380015597.01.T01:three_prime_UTR
GGTAAACCTGTCATGGATGT+TGG 0.587174 3:+72358590 MsG0380015597.01.T01:CDS
TCATCCTGGTAAACCTGTCA+TGG 0.592000 3:+72358583 MsG0380015597.01.T01:CDS
CACATACATCCATTTGAACA+TGG 0.597807 3:-72361495 None:intergenic
GTGAATGATGACAGTAGTGA+GGG 0.598100 3:+72358310 MsG0380015597.01.T01:exon
TGAAGGAAGCTTCATTGTAG+CGG 0.607644 3:-72361716 None:intergenic
ACTAGAATACCACCAACAGC+AGG 0.607847 3:-72361572 None:intergenic
GCGCTACCAACATCCATGAC+AGG 0.609183 3:-72358596 None:intergenic
TCAGAGTCACCGAAGAACTT+GGG 0.610880 3:-72360550 None:intergenic
CATAGTCCTCCTTTGTCCGG+TGG 0.613263 3:-72358516 None:intergenic
GAGAATTCATGGCGGAACGA+GGG 0.613422 3:-72358631 None:intergenic
GGAGAATTCATGGCGGAACG+AGG 0.619141 3:-72358632 None:intergenic
AAAATGCAAGGAGCGTGTAG+TGG 0.619177 3:+72360524 MsG0380015597.01.T01:CDS
GGTGTGGAACAAGAATTAGA+TGG 0.619573 3:+72361078 MsG0380015597.01.T01:CDS
TGGAGAAGAAAATGGTGAGG+CGG 0.619613 3:-72358489 None:intergenic
AACCGTACAAGATGATGGTG+GGG 0.626230 3:+72360103 MsG0380015597.01.T01:CDS
GCATTTACAGGTCAAAGGTG+TGG 0.632082 3:+72361062 MsG0380015597.01.T01:intron
AAGAGACTCTGGATTTGGAG+TGG 0.639473 3:-72358555 None:intergenic
CGTGAATGATGACAGTAGTG+AGG 0.640772 3:+72358309 MsG0380015597.01.T01:exon
CCAACCGTACAAGATGATGG+TGG 0.642464 3:+72360101 MsG0380015597.01.T01:CDS
TCATTACAGAAAGCTTGCAT+AGG 0.642915 3:+72361334 MsG0380015597.01.T01:three_prime_UTR
GGAACAAGAATTAGATGGCG+AGG 0.656954 3:+72361083 MsG0380015597.01.T01:CDS
TTAGGAAGACGATTACGACT+AGG 0.667897 3:+72358347 MsG0380015597.01.T01:CDS
ACAACGTCGTTTGGAGCAGG+AGG 0.667950 3:+72358246 MsG0380015597.01.T01:intron
AAAATCCGTATTGCATGACA+AGG 0.673795 3:-72361658 None:intergenic
GAATACCACCAACAGCAGGA+AGG 0.676393 3:-72361568 None:intergenic
TAGCAGCCAAGGCTGATAGA+GGG 0.676568 3:-72361359 None:intergenic
GCTTGAGAATCTAGAAAGAG+CGG 0.676647 3:-72358916 None:intergenic
AAATGGAGAAGAAAATGGTG+AGG 0.700803 3:-72358492 None:intergenic
CATTTGAACATGGAGAAAAG+CGG 0.706677 3:-72361485 None:intergenic
GCTGATGCATTATGTACCTG+AGG 0.715793 3:+72360592 MsG0380015597.01.T01:CDS
CTCCAAGCCAGATAACATTG+GGG 0.718422 3:+72361610 MsG0380015597.01.T01:three_prime_UTR
TGGTTGCGAGGTTGAAACGA+CGG 0.733707 3:-72358446 None:intergenic
TGAATGATGACAGTAGTGAG+GGG 0.740528 3:+72358311 MsG0380015597.01.T01:exon
AGCGAGAGGAGAATTCATGG+CGG 0.794743 3:-72358639 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAGAAAATAAAAACAAA+AGG - Chr3:72356550-72356569 None:intergenic 10.0%
!!! ATACAATTTTATTGAAATAT+TGG + Chr3:72356892-72356911 MsG0380015597.01.T01:intron 10.0%
!!! TACAATTTTATTGAAATATT+GGG + Chr3:72356893-72356912 MsG0380015597.01.T01:intron 10.0%
!!! TTTTTGTTTTTTTATTTGTA+GGG - Chr3:72359653-72359672 None:intergenic 10.0%
!!! TTTTTTGTTTTTTTATTTGT+AGG - Chr3:72359654-72359673 None:intergenic 10.0%
!! ATTGAACAATTCATATAAAA+TGG - Chr3:72361003-72361022 None:intergenic 15.0%
!! TAGAATATTAGTAAATTAGT+GGG - Chr3:72359514-72359533 None:intergenic 15.0%
!! TCAATAAAATTGTATTTCTT+TGG - Chr3:72356887-72356906 None:intergenic 15.0%
!! TGTTATGAAATTTAAGTAAA+AGG - Chr3:72359030-72359049 None:intergenic 15.0%
!! TTAGAATATTAGTAAATTAG+TGG - Chr3:72359515-72359534 None:intergenic 15.0%
!!! GAGTTTATTTTAAAACATTA+TGG + Chr3:72359082-72359101 MsG0380015597.01.T01:intron 15.0%
!!! GGAAAATCTATTTTTTTAAT+AGG - Chr3:72357722-72357741 None:intergenic 15.0%
!!! TTCTTTTTAACAAAAAAATC+AGG + Chr3:72359798-72359817 MsG0380015597.01.T01:intron 15.0%
!!! TTTTGTTTTTTTATTTGTAG+GGG - Chr3:72359652-72359671 None:intergenic 15.0%
!! AAAAAACAAAAGACATAGAA+AGG - Chr3:72357528-72357547 None:intergenic 20.0%
!! AAATAAAATAAGAGATTGAG+AGG + Chr3:72359675-72359694 MsG0380015597.01.T01:intron 20.0%
!! AATAAAATAAGAGATTGAGA+GGG + Chr3:72359676-72359695 MsG0380015597.01.T01:intron 20.0%
!! AATACACCCAAAATAAATAA+GGG + Chr3:72358192-72358211 MsG0380015597.01.T01:intron 20.0%
!! AATCAATTGTATAAGACAAA+TGG - Chr3:72360849-72360868 None:intergenic 20.0%
!! AATTTATATATCTACTAGCT+AGG - Chr3:72359327-72359346 None:intergenic 20.0%
!! ACACAAATTAAAGAAATGAA+AGG - Chr3:72358743-72358762 None:intergenic 20.0%
!! AGAAAATAAAAACAAAAGGA+AGG - Chr3:72356546-72356565 None:intergenic 20.0%
!! ATTTATATATCTACTAGCTA+GGG - Chr3:72359326-72359345 None:intergenic 20.0%
!! ATTTGATAAATATCATTAGC+TGG - Chr3:72359359-72359378 None:intergenic 20.0%
!! CAAAATTCACTCAAAAAAAT+TGG - Chr3:72361695-72361714 None:intergenic 20.0%
!! CTTGTAATTTAATTAGTGTT+TGG - Chr3:72359406-72359425 None:intergenic 20.0%
!! TAAAAGGAATACATGATAAA+AGG - Chr3:72357171-72357190 None:intergenic 20.0%
!! TAATGTTGTACATTATAGAA+TGG + Chr3:72360442-72360461 MsG0380015597.01.T01:intron 20.0%
!! TATAAGTTGTTTGTAATTTG+TGG - Chr3:72358010-72358029 None:intergenic 20.0%
!! TATTAATATTGCTGCAAATT+TGG + Chr3:72356333-72356352 MsG0380015597.01.T01:intron 20.0%
!! TGAATATTTGTGAAGTTTAT+TGG - Chr3:72356992-72357011 None:intergenic 20.0%
!! TGCAAATCTTATAAGTTAAT+TGG - Chr3:72360813-72360832 None:intergenic 20.0%
!! TTGATTACCGTAAATATAAA+TGG - Chr3:72360668-72360687 None:intergenic 20.0%
!!! AAATAGATTTTCCATCATAT+AGG + Chr3:72357729-72357748 MsG0380015597.01.T01:intron 20.0%
!!! AACATTTTTCCAAAAATCAA+AGG - Chr3:72357435-72357454 None:intergenic 20.0%
!!! AATAGATTTTCCATCATATA+GGG + Chr3:72357730-72357749 MsG0380015597.01.T01:intron 20.0%
!!! AATTTGACCCTTATTTATTT+TGG - Chr3:72358202-72358221 None:intergenic 20.0%
!!! ACAAAAACAAAAAAAGCATA+TGG + Chr3:72361531-72361550 MsG0380015597.01.T01:three_prime_UTR 20.0%
!!! ACTTGTATTGATATAAGATT+TGG + Chr3:72361456-72361475 MsG0380015597.01.T01:three_prime_UTR 20.0%
!!! ATTTGACCCTTATTTATTTT+GGG - Chr3:72358201-72358220 None:intergenic 20.0%
!!! CTTTTGTTAGTTAATTTTGA+GGG + Chr3:72356517-72356536 MsG0380015597.01.T01:intron 20.0%
!!! GAACTTTATCTCATTATTTT+AGG + Chr3:72360235-72360254 MsG0380015597.01.T01:intron 20.0%
!!! GTCATATTTTTCTATAATTG+CGG + Chr3:72361146-72361165 MsG0380015597.01.T01:three_prime_UTR 20.0%
!!! TACATATTATTTTCACAAAG+TGG + Chr3:72357669-72357688 MsG0380015597.01.T01:intron 20.0%
!!! TTATTTAAAGCAGCATTAAT+AGG + Chr3:72360970-72360989 MsG0380015597.01.T01:intron 20.0%
!!! TTTACTTGCTTTTTATATTG+TGG + Chr3:72360469-72360488 MsG0380015597.01.T01:CDS 20.0%
!!! TTTGTATACCATTTTTTGAA+CGG + Chr3:72356167-72356186 MsG0380015597.01.T01:intron 20.0%
!!! TTTTAACAAAAAAATCAGGA+GGG + Chr3:72359802-72359821 MsG0380015597.01.T01:intron 20.0%
!!! TTTTATTGAAATATTGGGAA+AGG + Chr3:72356898-72356917 MsG0380015597.01.T01:intron 20.0%
!!! TTTTTAACAAAAAAATCAGG+AGG + Chr3:72359801-72359820 MsG0380015597.01.T01:intron 20.0%
! AAAGTATAATAATACTGCAG+CGG - Chr3:72356574-72356593 None:intergenic 25.0%
! AAATATAATAAGTTGCGAGT+TGG + Chr3:72361226-72361245 MsG0380015597.01.T01:three_prime_UTR 25.0%
! AAATGTTAAAGAGAAACCTA+TGG - Chr3:72359922-72359941 None:intergenic 25.0%
! ACACAAGCATACAATATTAT+TGG - Chr3:72357312-72357331 None:intergenic 25.0%
! AGAGAATATGAGTTATTGTA+TGG + Chr3:72356663-72356682 MsG0380015597.01.T01:intron 25.0%
! AGGTAAGATTAAAGAGTAAA+AGG + Chr3:72356697-72356716 MsG0380015597.01.T01:intron 25.0%
! ATTGTATGGAATTGGTTAAA+AGG + Chr3:72356677-72356696 MsG0380015597.01.T01:intron 25.0%
! ATTTGTAGGGGTAATTAATA+AGG - Chr3:72359640-72359659 None:intergenic 25.0%
! CAAACAACTTATATTTGATG+AGG + Chr3:72358017-72358036 MsG0380015597.01.T01:intron 25.0%
! CAATACACCCAAAATAAATA+AGG + Chr3:72358191-72358210 MsG0380015597.01.T01:intron 25.0%
! CCTCAAAATTAACTAACAAA+AGG - Chr3:72356519-72356538 None:intergenic 25.0%
! CGTGAATTGAAATAAAATGA+GGG - Chr3:72356122-72356141 None:intergenic 25.0%
! GTACAAAGATCAATATGATA+TGG - Chr3:72357953-72357972 None:intergenic 25.0%
! TAATCAAATTGATTGGAAAC+TGG + Chr3:72360681-72360700 MsG0380015597.01.T01:intron 25.0%
! TATGAGTTATTGTATGGAAT+TGG + Chr3:72356669-72356688 MsG0380015597.01.T01:intron 25.0%
! TCGTGAATTGAAATAAAATG+AGG - Chr3:72356123-72356142 None:intergenic 25.0%
! TGCAGTATTATTATACTTTC+CGG + Chr3:72356575-72356594 MsG0380015597.01.T01:intron 25.0%
! TGTTAGAATGACATGATAAA+AGG - Chr3:72357187-72357206 None:intergenic 25.0%
! TTATGTTCTTTAATTGTTGC+AGG + Chr3:72358772-72358791 MsG0380015597.01.T01:intron 25.0%
! TTCAAGATGTCAAAACTAAA+TGG + Chr3:72360001-72360020 MsG0380015597.01.T01:intron 25.0%
! TTCCATTTATGCTTTCAATT+TGG + Chr3:72356221-72356240 MsG0380015597.01.T01:intron 25.0%
! TTTAACAAAAAAATCAGGAG+GGG + Chr3:72359803-72359822 MsG0380015597.01.T01:intron 25.0%
! TTTACGGTAATCAAATTGAT+TGG + Chr3:72360674-72360693 MsG0380015597.01.T01:intron 25.0%
! TTTATATATCTACTAGCTAG+GGG - Chr3:72359325-72359344 None:intergenic 25.0%
!! AAATCAATTTTCACGATTGA+CGG + Chr3:72358662-72358681 MsG0380015597.01.T01:CDS 25.0%
!! AAGTCTAAATACTTTTCCAT+AGG + Chr3:72359903-72359922 MsG0380015597.01.T01:intron 25.0%
!! ACAATTTTCCGTTCAAAAAA+TGG - Chr3:72356178-72356197 None:intergenic 25.0%
!! ATGACATGAAATTTTTGTTC+CGG + Chr3:72361261-72361280 MsG0380015597.01.T01:three_prime_UTR 25.0%
!! CCTTTTGTTAGTTAATTTTG+AGG + Chr3:72356516-72356535 MsG0380015597.01.T01:intron 25.0%
!! GCTGTTTCCATTTATATTTA+CGG + Chr3:72360658-72360677 MsG0380015597.01.T01:intron 25.0%
!! TGTTTTACTTCTTAGCATAT+TGG + Chr3:72356783-72356802 MsG0380015597.01.T01:intron 25.0%
!! TTGCTGCAATTTTGTATTTT+TGG + Chr3:72356383-72356402 MsG0380015597.01.T01:intron 25.0%
!!! AAATCATGTTTTTGCTTTTG+TGG - Chr3:72357815-72357834 None:intergenic 25.0%
!!! AAGCAATTTTAAAACAAGCA+AGG + Chr3:72356058-72356077 MsG0380015597.01.T01:five_prime_UTR 25.0%
!!! AGTTAGTTTCCTTTGATTTT+TGG + Chr3:72357423-72357442 MsG0380015597.01.T01:intron 25.0%
!!! ATAGCTATTGACTTTGATTT+AGG + Chr3:72357922-72357941 MsG0380015597.01.T01:intron 25.0%
!!! ATGGAAAAGTATTTAGACTT+GGG - Chr3:72359903-72359922 None:intergenic 25.0%
!!! ATTTAGTTTTGACATCTTGA+AGG - Chr3:72360002-72360021 None:intergenic 25.0%
!!! TAGCTATTGACTTTGATTTA+GGG + Chr3:72357923-72357942 MsG0380015597.01.T01:intron 25.0%
!!! TATATTTTAGCTCACTATGA+TGG - Chr3:72357905-72357924 None:intergenic 25.0%
!!! TATGGAAAAGTATTTAGACT+TGG - Chr3:72359904-72359923 None:intergenic 25.0%
AAAAAACACCAACACTGTAT+TGG - Chr3:72360372-72360391 None:intergenic 30.0%
AAAAAACAGGATGTGGAAAT+TGG - Chr3:72356268-72356287 None:intergenic 30.0%
AATCAACTTAAGAATGCCAT+AGG - Chr3:72360758-72360777 None:intergenic 30.0%
AATGAAATACAAAGCCTGAA+TGG + Chr3:72359715-72359734 MsG0380015597.01.T01:intron 30.0%
AATGTTAGGAACTCAAGAAT+TGG + Chr3:72356858-72356877 MsG0380015597.01.T01:intron 30.0%
AATTTCAGAGTTCAAATCCT+AGG + Chr3:72359477-72359496 MsG0380015597.01.T01:intron 30.0%
ATAATAGCAGCAAAGATTTC+AGG - Chr3:72358874-72358893 None:intergenic 30.0%
ATATACGAACAATCTTCCTA+AGG - Chr3:72357696-72357715 None:intergenic 30.0%
ATCGTCAAACTTAAAATGCA+AGG + Chr3:72360512-72360531 MsG0380015597.01.T01:CDS 30.0%
ATCTCACTAGAATAGTATGA+TGG + Chr3:72361293-72361312 MsG0380015597.01.T01:three_prime_UTR 30.0%
ATGCTTGTGTATGTCAAATT+TGG + Chr3:72356610-72356629 MsG0380015597.01.T01:intron 30.0%
ATTATGGATTTCTACTCTTC+TGG + Chr3:72358889-72358908 MsG0380015597.01.T01:CDS 30.0%
GAATTGATAAGGAGAATGTT+AGG + Chr3:72356844-72356863 MsG0380015597.01.T01:intron 30.0%
GCAATATCAACATAGAAATG+AGG - Chr3:72358982-72359001 None:intergenic 30.0%
GGTCAAATTGTGAAAAAAGT+AGG + Chr3:72357233-72357252 MsG0380015597.01.T01:intron 30.0%
GTATGAGATTTGTCTAACTT+AGG + Chr3:72359973-72359992 MsG0380015597.01.T01:intron 30.0%
TAAGAAAGAAATCAAACCCT+AGG + Chr3:72358067-72358086 MsG0380015597.01.T01:intron 30.0%
TATTCTAGTGAGATCTAACT+AGG - Chr3:72361287-72361306 None:intergenic 30.0%
TGAAATCTTTGCTGCTATTA+TGG + Chr3:72358873-72358892 MsG0380015597.01.T01:CDS 30.0%
TGCTTGTGTATGTCAAATTT+GGG + Chr3:72356611-72356630 MsG0380015597.01.T01:intron 30.0%
TTATATATCTACTAGCTAGG+GGG - Chr3:72359324-72359343 None:intergenic 30.0%
TTTGCAATACAAGACAATGT+TGG + Chr3:72360407-72360426 MsG0380015597.01.T01:intron 30.0%
! AGTGTTTTGCAATAAAGAAG+TGG + Chr3:72357362-72357381 MsG0380015597.01.T01:intron 30.0%
! GATATGGTCTTGAATTGATA+AGG + Chr3:72356833-72356852 MsG0380015597.01.T01:intron 30.0%
! GATTTCGAGGGTATATTAAA+AGG + Chr3:72360774-72360793 MsG0380015597.01.T01:intron 30.0%
! GTTGTGGTTATTAGTATTGA+TGG + Chr3:72357590-72357609 MsG0380015597.01.T01:intron 30.0%
! TAAAGAGTAAAAGGTTTTGC+CGG + Chr3:72356706-72356725 MsG0380015597.01.T01:intron 30.0%
! TGCCAAATTGAAAGCATAAA+TGG - Chr3:72356226-72356245 None:intergenic 30.0%
! TTTGGTAACAGTGACAAAAT+CGG - Chr3:72358821-72358840 None:intergenic 30.0%
!! ACATTGAAAGAGTACTAACT+AGG + Chr3:72359454-72359473 MsG0380015597.01.T01:intron 30.0%
!! AGATTATTGTGATTAGTCTC+TGG - Chr3:72358392-72358411 None:intergenic 30.0%
!! CATTCTTAAGTTGATTTCGA+GGG + Chr3:72360762-72360781 MsG0380015597.01.T01:intron 30.0%
!! TTTGCTTTTGTGGATGTTTA+GGG - Chr3:72357805-72357824 None:intergenic 30.0%
!! TTTTGCTTTTGTGGATGTTT+AGG - Chr3:72357806-72357825 None:intergenic 30.0%
!!! TGCTGGTTTTTAGTAGATTT+GGG + Chr3:72356455-72356474 MsG0380015597.01.T01:intron 30.0%
!!! TTGCTGGTTTTTAGTAGATT+TGG + Chr3:72356454-72356473 MsG0380015597.01.T01:intron 30.0%
AAAATCCGTATTGCATGACA+AGG - Chr3:72361661-72361680 None:intergenic 35.0%
AAAGGATGCTATCGTACATA+TGG + Chr3:72358091-72358110 MsG0380015597.01.T01:intron 35.0%
AAATACAAAGCCTGAATGGT+GGG + Chr3:72359719-72359738 MsG0380015597.01.T01:intron 35.0%
AAATGGAGAAGAAAATGGTG+AGG - Chr3:72358495-72358514 None:intergenic 35.0%
AACAGAGAATGGATGATCTT+AGG + Chr3:72357203-72357222 MsG0380015597.01.T01:intron 35.0%
AACATAAGAGACTCTGGATT+TGG - Chr3:72358563-72358582 None:intergenic 35.0%
ACAGAGAATGGATGATCTTA+GGG + Chr3:72357204-72357223 MsG0380015597.01.T01:intron 35.0%
ACTTAAGAATGCCATAGGAA+AGG - Chr3:72360753-72360772 None:intergenic 35.0%
AGATAAAGTTCAACCCAACT+AGG - Chr3:72360226-72360245 None:intergenic 35.0%
AGGCATCATTATTTGGCTAT+TGG + Chr3:72361416-72361435 MsG0380015597.01.T01:three_prime_UTR 35.0%
ATCCACAAAAAAACAGGATG+TGG - Chr3:72356275-72356294 None:intergenic 35.0%
ATCTACTAAAAACCAGCAAC+CGG - Chr3:72356453-72356472 None:intergenic 35.0%
ATGCTTACCTGTTTGCATAT+AGG + Chr3:72360025-72360044 MsG0380015597.01.T01:intron 35.0%
ATGGATGTATGTGCATGTTA+AGG + Chr3:72361505-72361524 MsG0380015597.01.T01:three_prime_UTR 35.0%
ATTGCTTCAGTCTCATTTCA+AGG + Chr3:72358997-72359016 MsG0380015597.01.T01:intron 35.0%
ATTTGGGTAAGTAGTGTTTC+AGG + Chr3:72356471-72356490 MsG0380015597.01.T01:intron 35.0%
CAAATCAGAAGATGCATCAT+GGG + Chr3:72358837-72358856 MsG0380015597.01.T01:CDS 35.0%
CACATACATCCATTTGAACA+TGG - Chr3:72361498-72361517 None:intergenic 35.0%
CATGTCATTCTAACAGAGAA+TGG + Chr3:72357192-72357211 MsG0380015597.01.T01:intron 35.0%
CATTTGAACATGGAGAAAAG+CGG - Chr3:72361488-72361507 None:intergenic 35.0%
CTTACACCAAAAACTACAAC+AGG - Chr3:72356415-72356434 None:intergenic 35.0%
CTTGGAATAGACTATTGTTG+TGG + Chr3:72357574-72357593 MsG0380015597.01.T01:intron 35.0%
GAACTCAAAACACACAACAA+TGG - Chr3:72356204-72356223 None:intergenic 35.0%
GAGTAGAGATTATTCATCGA+AGG - Chr3:72360164-72360183 None:intergenic 35.0%
GATACAATTATCACAATCGC+CGG - Chr3:72356728-72356747 None:intergenic 35.0%
GCAAATTTCCAATACAGTGT+TGG + Chr3:72360361-72360380 MsG0380015597.01.T01:intron 35.0%
GTAACAATAACAACGTCGTT+TGG + Chr3:72358237-72358256 MsG0380015597.01.T01:intron 35.0%
GTGAAGTTTATTGGATAGAG+CGG - Chr3:72356983-72357002 None:intergenic 35.0%
GTGGAAAATGGAGAAGAAAA+TGG - Chr3:72358500-72358519 None:intergenic 35.0%
GTTCCTTACCTTCCAAATTT+GGG - Chr3:72357337-72357356 None:intergenic 35.0%
TACAACTGCTTCATTACAGA+AGG - Chr3:72360724-72360743 None:intergenic 35.0%
TAGTATGCACAATGACAGAT+AGG - Chr3:72360905-72360924 None:intergenic 35.0%
TCATTACAGAAAGCTTGCAT+AGG + Chr3:72361334-72361353 MsG0380015597.01.T01:three_prime_UTR 35.0%
TGATAATTGTATCTGAGAGC+TGG + Chr3:72356735-72356754 MsG0380015597.01.T01:intron 35.0%
TGTTCATTCTACACATGACT+TGG + Chr3:72357556-72357575 MsG0380015597.01.T01:intron 35.0%
TTCATCGAAGGAAGAACTTA+CGG - Chr3:72360152-72360171 None:intergenic 35.0%
TTCTGCATCCACAAAAAAAC+AGG - Chr3:72356281-72356300 None:intergenic 35.0%
TTGACCAAAAAGCAAACACA+AGG - Chr3:72357853-72357872 None:intergenic 35.0%
! AAGTGCAAGGCATCATTATT+TGG + Chr3:72361409-72361428 MsG0380015597.01.T01:three_prime_UTR 35.0%
! ATTTTCACAAAGTGGTCCTT+AGG + Chr3:72357677-72357696 MsG0380015597.01.T01:intron 35.0%
! GGAATTACTCGTGTTTTCTT+TGG + Chr3:72358793-72358812 MsG0380015597.01.T01:intron 35.0%
! GTGAAAATTGATTTAGCGAG+AGG - Chr3:72358656-72358675 None:intergenic 35.0%
! TGTATGCCTGTTGTAGTTTT+TGG + Chr3:72356406-72356425 MsG0380015597.01.T01:intron 35.0%
! TTTTAGTGACCCAAATGCTT+GGG + Chr3:72359949-72359968 MsG0380015597.01.T01:intron 35.0%
! TTTTCTTCTCCATTTTCCAC+CGG + Chr3:72358500-72358519 MsG0380015597.01.T01:CDS 35.0%
!! AGAAGCACTTCAACAACATA+TGG - Chr3:72357616-72357635 None:intergenic 35.0%
!! CTTTTTGGTCAAGGTTAACA+TGG + Chr3:72357861-72357880 MsG0380015597.01.T01:intron 35.0%
!! GCATTCTTAAGTTGATTTCG+AGG + Chr3:72360761-72360780 MsG0380015597.01.T01:intron 35.0%
!! TAATGCAAACTTGTTACCTC+AGG - Chr3:72360611-72360630 None:intergenic 35.0%
!! TGTGGTTTTCTCTAGAGATA+CGG + Chr3:72360487-72360506 MsG0380015597.01.T01:CDS 35.0%
!! TTGCTTTTGTGGATGTTTAG+GGG - Chr3:72357804-72357823 None:intergenic 35.0%
!!! GAAAGAGATGTGGTTTTTTC+GGG + Chr3:72356760-72356779 MsG0380015597.01.T01:intron 35.0%
!!! GGAAAGAGATGTGGTTTTTT+CGG + Chr3:72356759-72356778 MsG0380015597.01.T01:intron 35.0%
!!! TAGTTTTGACATCTTGAAGG+TGG - Chr3:72359999-72360018 None:intergenic 35.0%
!!! TTCCACATCCTGTTTTTTTG+TGG + Chr3:72356270-72356289 MsG0380015597.01.T01:intron 35.0%
!!! TTGTGTTTGCTTTTTGGTCA+AGG + Chr3:72357852-72357871 MsG0380015597.01.T01:intron 35.0%
AAACATAGTCCTCCTTTGTC+CGG - Chr3:72358522-72358541 None:intergenic 40.0%
AATTGCTGTGTCTTTGGATG+AGG - Chr3:72358944-72358963 None:intergenic 40.0%
AATTTGGAAGGTAAGGAACG+AGG + Chr3:72357338-72357357 MsG0380015597.01.T01:intron 40.0%
ACATGGTGAACGATGTGTAT+TGG + Chr3:72357878-72357897 MsG0380015597.01.T01:intron 40.0%
ACTGACCTTGTCATGCAATA+CGG + Chr3:72361653-72361672 MsG0380015597.01.T01:three_prime_UTR 40.0%
ACTGCTTCATTACAGAAGGA+CGG - Chr3:72360720-72360739 None:intergenic 40.0%
AGAAATCAAACCCTAGGCAA+AGG + Chr3:72358073-72358092 MsG0380015597.01.T01:intron 40.0%
AGAAGTCCTGACCTTAATTC+AGG + Chr3:72359174-72359193 MsG0380015597.01.T01:intron 40.0%
AGAGGGACATAATAAGTAGC+AGG - Chr3:72359837-72359856 None:intergenic 40.0%
AGCGGTGACTCTATTATGAA+GGG - Chr3:72356965-72356984 None:intergenic 40.0%
AGTACAACAGCAGTACATGA+TGG + Chr3:72361176-72361195 MsG0380015597.01.T01:three_prime_UTR 40.0%
ATCGTGAATTGCTGTGTCTT+TGG - Chr3:72358950-72358969 None:intergenic 40.0%
ATCTCATACTCCCAAGCATT+TGG - Chr3:72359962-72359981 None:intergenic 40.0%
ATGCTTGTGTGTCCCAAATT+TGG + Chr3:72357322-72357341 MsG0380015597.01.T01:intron 40.0%
ATTGCATGACAAGGTCAGTT+TGG - Chr3:72361652-72361671 None:intergenic 40.0%
CAGAGAATGGATGATCTTAG+GGG + Chr3:72357205-72357224 MsG0380015597.01.T01:intron 40.0%
CATTCTACCTTTGCCTAGTT+GGG + Chr3:72360210-72360229 MsG0380015597.01.T01:intron 40.0%
CCAAAAAGCAAACACAAGGA+TGG - Chr3:72357849-72357868 None:intergenic 40.0%
CCAAATCAGAAGATGCATCA+TGG + Chr3:72358836-72358855 MsG0380015597.01.T01:CDS 40.0%
CCATGATGCATCTTCTGATT+TGG - Chr3:72358839-72358858 None:intergenic 40.0%
CGTTCCTTACCTTCCAAATT+TGG - Chr3:72357338-72357357 None:intergenic 40.0%
CTTGTGTAAAGAACGTGGTA+AGG - Chr3:72359224-72359243 None:intergenic 40.0%
GAAATACAAAGCCTGAATGG+TGG + Chr3:72359718-72359737 MsG0380015597.01.T01:intron 40.0%
GAAGTCCTGACCTTAATTCA+GGG + Chr3:72359175-72359194 MsG0380015597.01.T01:intron 40.0%
GAGATACAAGAGAATGCCAA+CGG - Chr3:72359881-72359900 None:intergenic 40.0%
GAGTCTCTTATGTTTCATCC+TGG + Chr3:72358569-72358588 MsG0380015597.01.T01:CDS 40.0%
GCAAAGGTAGAATGGAACAT+TGG - Chr3:72360204-72360223 None:intergenic 40.0%
GCTTGAGAATCTAGAAAGAG+CGG - Chr3:72358919-72358938 None:intergenic 40.0%
GGATGAAACATAAGAGACTC+TGG - Chr3:72358569-72358588 None:intergenic 40.0%
GGTGTGGAACAAGAATTAGA+TGG + Chr3:72361078-72361097 MsG0380015597.01.T01:CDS 40.0%
GTCGTAATCGTCTTCCTAAT+CGG - Chr3:72358346-72358365 None:intergenic 40.0%
GTGAATGATGACAGTAGTGA+GGG + Chr3:72358310-72358329 MsG0380015597.01.T01:exon 40.0%
GTGCAAAGAGCAATATGACA+TGG - Chr3:72358158-72358177 None:intergenic 40.0%
GTTTGCTTCTTTCTGTGTTC+TGG + Chr3:72356143-72356162 MsG0380015597.01.T01:intron 40.0%
TAATTGTATCTGAGAGCTGG+TGG + Chr3:72356738-72356757 MsG0380015597.01.T01:intron 40.0%
TACCACGTTCTTTACACAAG+AGG + Chr3:72359224-72359243 MsG0380015597.01.T01:intron 40.0%
TACTGTCATCATTCACGATC+TGG - Chr3:72358306-72358325 None:intergenic 40.0%
TATTATGAAGGGGAAACCCT+TGG - Chr3:72356954-72356973 None:intergenic 40.0%
TCAATTCAAGACCATATCCC+CGG - Chr3:72356831-72356850 None:intergenic 40.0%
TCCTTCTGAATCAAAGTGCA+AGG + Chr3:72361396-72361415 MsG0380015597.01.T01:three_prime_UTR 40.0%
TCTACTAAAAACCAGCAACC+GGG - Chr3:72356452-72356471 None:intergenic 40.0%
TCTCATACTCCCAAGCATTT+GGG - Chr3:72359961-72359980 None:intergenic 40.0%
TCTCCAAGCCAGATAACATT+GGG + Chr3:72361609-72361628 MsG0380015597.01.T01:three_prime_UTR 40.0%
TGAAACAGTTGCGATGATCA+AGG + Chr3:72360055-72360074 MsG0380015597.01.T01:CDS 40.0%
TGAAGGAAGCTTCATTGTAG+CGG - Chr3:72361719-72361738 None:intergenic 40.0%
TGAATGATGACAGTAGTGAG+GGG + Chr3:72358311-72358330 MsG0380015597.01.T01:exon 40.0%
TGCTCAAGTTCCCTATATGA+TGG - Chr3:72357743-72357762 None:intergenic 40.0%
TGGATGATCTTAGGGGATAT+TGG + Chr3:72357212-72357231 MsG0380015597.01.T01:intron 40.0%
TGGCTATTGGCATTGTATTC+AGG + Chr3:72361429-72361448 MsG0380015597.01.T01:three_prime_UTR 40.0%
TGGGATGGATGATTGATGAA+TGG + Chr3:72359738-72359757 MsG0380015597.01.T01:intron 40.0%
TGTCCCAAATTTGGAAGGTA+AGG + Chr3:72357331-72357350 MsG0380015597.01.T01:intron 40.0%
TTAGGAAGACGATTACGACT+AGG + Chr3:72358347-72358366 MsG0380015597.01.T01:CDS 40.0%
TTCTCCAAGCCAGATAACAT+TGG + Chr3:72361608-72361627 MsG0380015597.01.T01:three_prime_UTR 40.0%
TTGCTGCATTTACAGGTCAA+AGG + Chr3:72361057-72361076 MsG0380015597.01.T01:intron 40.0%
TTGTACGTGTACCTTTCCTA+TGG + Chr3:72360739-72360758 MsG0380015597.01.T01:intron 40.0%
TTGTGTGTCCCAAATTTGGA+AGG + Chr3:72357326-72357345 MsG0380015597.01.T01:intron 40.0%
TTTAGCGAGAGGAGAATTCA+TGG - Chr3:72358645-72358664 None:intergenic 40.0%
! AACTGTTTTGCTTGAGATGC+CGG + Chr3:72356809-72356828 MsG0380015597.01.T01:intron 40.0%
! CGCTTTTCTCCATGTTCAAA+TGG + Chr3:72361486-72361505 MsG0380015597.01.T01:three_prime_UTR 40.0%
! CTTTTAGTGACCCAAATGCT+TGG + Chr3:72359948-72359967 MsG0380015597.01.T01:intron 40.0%
! TATACTTTCCGGCTCTGATA+TGG + Chr3:72356586-72356605 MsG0380015597.01.T01:intron 40.0%
! TCTTTGAAGAGTCCTAACCT+TGG + Chr3:72357457-72357476 MsG0380015597.01.T01:intron 40.0%
! TGCGATGATCAAGGAACTTT+TGG + Chr3:72360064-72360083 MsG0380015597.01.T01:CDS 40.0%
! TGCTTTTGTGGATGTTTAGG+GGG - Chr3:72357803-72357822 None:intergenic 40.0%
! TTTACACAAGAGGCTGTTTC+AGG + Chr3:72359234-72359253 MsG0380015597.01.T01:intron 40.0%
!! AGGAAGAGAAAAAGGCATTG+TGG - Chr3:72358469-72358488 None:intergenic 40.0%
!! CCATCCTTGTGTTTGCTTTT+TGG + Chr3:72357846-72357865 MsG0380015597.01.T01:intron 40.0%
!! GTGATTAGTCTCTGGTTTGA+GGG - Chr3:72358384-72358403 None:intergenic 40.0%
!! GTGGTTTTCTCTAGAGATAC+GGG + Chr3:72360488-72360507 MsG0380015597.01.T01:CDS 40.0%
!! TGGTTTTCTCTAGAGATACG+GGG + Chr3:72360489-72360508 MsG0380015597.01.T01:CDS 40.0%
!! TGTGATTAGTCTCTGGTTTG+AGG - Chr3:72358385-72358404 None:intergenic 40.0%
!! TGTGGCACTGACAAGTTTAT+GGG - Chr3:72357992-72358011 None:intergenic 40.0%
!! TTGTGGCACTGACAAGTTTA+TGG - Chr3:72357993-72358012 None:intergenic 40.0%
AAGAGACTCTGGATTTGGAG+TGG - Chr3:72358558-72358577 None:intergenic 45.0%
AATCATCCATCCCACCATTC+AGG - Chr3:72359732-72359751 None:intergenic 45.0%
ACAAAAAAATCAGGAGGGGC+TGG + Chr3:72359807-72359826 MsG0380015597.01.T01:intron 45.0%
ACAAATTGTTCTCGCTGCCT+GGG + Chr3:72358416-72358435 MsG0380015597.01.T01:CDS 45.0%
ACAACTTTATCGTTGCGCCA+AGG + Chr3:72359296-72359315 MsG0380015597.01.T01:intron 45.0%
ACAAGTCTGTCGTCACAAGT+AGG + Chr3:72359421-72359440 MsG0380015597.01.T01:intron 45.0%
ACATCCATGACAGGTTTACC+AGG - Chr3:72358590-72358609 None:intergenic 45.0%
ACGATAGCATCCTTTGCCTA+GGG - Chr3:72358086-72358105 None:intergenic 45.0%
ACTAGAATACCACCAACAGC+AGG - Chr3:72361575-72361594 None:intergenic 45.0%
AGAATTAGATGGCGAGGAAG+AGG + Chr3:72361089-72361108 MsG0380015597.01.T01:CDS 45.0%
AGAGTGAAATCTCTCCTCCA+AGG + Chr3:72356934-72356953 MsG0380015597.01.T01:intron 45.0%
AGCCTCTTGTGTAAAGAACG+TGG - Chr3:72359229-72359248 None:intergenic 45.0%
AGTTCAACCCAACTAGGCAA+AGG - Chr3:72360220-72360239 None:intergenic 45.0%
ATCAACGCCCCAATGTTATC+TGG - Chr3:72361620-72361639 None:intergenic 45.0%
ATGTAGTTGACCCCACTTAG+TGG + Chr3:72359118-72359137 MsG0380015597.01.T01:intron 45.0%
CAAGCATACCATATCAGAGC+CGG - Chr3:72356597-72356616 None:intergenic 45.0%
CCAACTAGGCAAAGGTAGAA+TGG - Chr3:72360212-72360231 None:intergenic 45.0%
CCATTCTACCTTTGCCTAGT+TGG + Chr3:72360209-72360228 MsG0380015597.01.T01:intron 45.0%
CGTGAATGATGACAGTAGTG+AGG + Chr3:72358309-72358328 MsG0380015597.01.T01:exon 45.0%
CTACTAAAAACCAGCAACCG+GGG - Chr3:72356451-72356470 None:intergenic 45.0%
CTAGTGAGATCTAACTAGGC+CGG - Chr3:72361283-72361302 None:intergenic 45.0%
CTCCAAGCCAGATAACATTG+GGG + Chr3:72361610-72361629 MsG0380015597.01.T01:three_prime_UTR 45.0%
GAGCGGTGACTCTATTATGA+AGG - Chr3:72356966-72356985 None:intergenic 45.0%
GAGTGAAATCTCTCCTCCAA+GGG + Chr3:72356935-72356954 MsG0380015597.01.T01:intron 45.0%
GCATTTACAGGTCAAAGGTG+TGG + Chr3:72361062-72361081 MsG0380015597.01.T01:intron 45.0%
GCCTTGCACTTTGATTCAGA+AGG - Chr3:72361400-72361419 None:intergenic 45.0%
GCGGTGACTCTATTATGAAG+GGG - Chr3:72356964-72356983 None:intergenic 45.0%
GCTGATGCATTATGTACCTG+AGG + Chr3:72360592-72360611 MsG0380015597.01.T01:CDS 45.0%
GGAACAAGAATTAGATGGCG+AGG + Chr3:72361083-72361102 MsG0380015597.01.T01:CDS 45.0%
GGTAAACCTGTCATGGATGT+TGG + Chr3:72358590-72358609 MsG0380015597.01.T01:CDS 45.0%
GGTGGGGACATTGTATATTG+TGG + Chr3:72360119-72360138 MsG0380015597.01.T01:CDS 45.0%
GGTTGCTAACAACATTGTCG+AGG - Chr3:72357507-72357526 None:intergenic 45.0%
GTAAATGCAGCAAGCAGCAT+TGG - Chr3:72361050-72361069 None:intergenic 45.0%
TACAAATTGTTCTCGCTGCC+TGG + Chr3:72358415-72358434 MsG0380015597.01.T01:CDS 45.0%
TACAGAAGGACGGTAAGTTG+AGG - Chr3:72360710-72360729 None:intergenic 45.0%
TACGATAGCATCCTTTGCCT+AGG - Chr3:72358087-72358106 None:intergenic 45.0%
TACTAAAAACCAGCAACCGG+GGG - Chr3:72356450-72356469 None:intergenic 45.0%
TCAGAGTCACCGAAGAACTT+GGG - Chr3:72360553-72360572 None:intergenic 45.0%
TCATCCTGGTAAACCTGTCA+TGG + Chr3:72358583-72358602 MsG0380015597.01.T01:CDS 45.0%
TGAAGAGTCCTAACCTTGGT+CGG + Chr3:72357461-72357480 MsG0380015597.01.T01:intron 45.0%
TGCACAATGACAGATAGGTC+TGG - Chr3:72360900-72360919 None:intergenic 45.0%
TGCCTCGATTCAAAAACCGT+TGG + Chr3:72359862-72359881 MsG0380015597.01.T01:intron 45.0%
TGGAGAAGAAAATGGTGAGG+CGG - Chr3:72358492-72358511 None:intergenic 45.0%
TGTAGTTGACCCCACTTAGT+GGG + Chr3:72359119-72359138 MsG0380015597.01.T01:intron 45.0%
TTCAGAGTCACCGAAGAACT+TGG - Chr3:72360554-72360573 None:intergenic 45.0%
! AAAATGCAAGGAGCGTGTAG+TGG + Chr3:72360524-72360543 MsG0380015597.01.T01:CDS 45.0%
! AACCGTACAAGATGATGGTG+GGG + Chr3:72360103-72360122 MsG0380015597.01.T01:CDS 45.0%
! AACGGTTTTTGAATCGAGGC+AGG - Chr3:72359863-72359882 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - Chr3:72359131-72359150 None:intergenic 45.0%
! ACGGTTTTTGAATCGAGGCA+GGG - Chr3:72359862-72359881 None:intergenic 45.0%
! ACTGTTTTGCTTGAGATGCC+GGG + Chr3:72356810-72356829 MsG0380015597.01.T01:intron 45.0%
! AGGGGTAGTGTTTTCCGATT+AGG + Chr3:72358329-72358348 MsG0380015597.01.T01:CDS 45.0%
! ATAACAACGTCGTTTGGAGC+AGG + Chr3:72358243-72358262 MsG0380015597.01.T01:intron 45.0%
! ATGCTGCTTGCTGCATTTAC+AGG + Chr3:72361050-72361069 MsG0380015597.01.T01:intron 45.0%
! CAACCGTACAAGATGATGGT+GGG + Chr3:72360102-72360121 MsG0380015597.01.T01:CDS 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - Chr3:72359132-72359151 None:intergenic 45.0%
! TCAAGCCTTATCCCACTAAG+TGG - Chr3:72359133-72359152 None:intergenic 45.0%
! TGAGAGGGTGTAGAGTTGAA+AGG + Chr3:72359691-72359710 MsG0380015597.01.T01:intron 45.0%
! TGCCAACGGTTTTTGAATCG+AGG - Chr3:72359867-72359886 None:intergenic 45.0%
!! AAAAAGGCATTGTGGTTGCG+AGG - Chr3:72358461-72358480 None:intergenic 45.0%
!! AGTGGGTTGTGTTAGTTCCT+AGG - Chr3:72359497-72359516 None:intergenic 45.0%
!! GAAGAGGAAGCAGCTTTAAG+TGG + Chr3:72361105-72361124 MsG0380015597.01.T01:CDS 45.0%
!! GATTTGGAGTGGACTGTGTT+TGG - Chr3:72358547-72358566 None:intergenic 45.0%
!! GTTGTTTTCCTTCCTGCTGT+TGG + Chr3:72361560-72361579 MsG0380015597.01.T01:three_prime_UTR 45.0%
!!! TAAGCCCTTTTTAGTTCCCC+CGG + Chr3:72356431-72356450 MsG0380015597.01.T01:intron 45.0%
AGAAGAAAATGGTGAGGCGG+AGG - Chr3:72358489-72358508 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr3:72358694-72358713 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+GGG - Chr3:72358694-72358713 None:intergenic 50.0%
AGAGCTGGTGGAAAGAGATG+TGG + Chr3:72356750-72356769 MsG0380015597.01.T01:intron 50.0%
AGATGATCCCGACCAAGGTT+AGG - Chr3:72357472-72357491 None:intergenic 50.0%
AGCAACCGGGGGAACTAAAA+AGG - Chr3:72356439-72356458 None:intergenic 50.0%
AGCGAGAGGAGAATTCATGG+CGG - Chr3:72358642-72358661 None:intergenic 50.0%
CCACCATCATCTTGTACGGT+TGG - Chr3:72360104-72360123 None:intergenic 50.0%
CCTGACCTTAATTCAGGGTG+CGG + Chr3:72359180-72359199 MsG0380015597.01.T01:intron 50.0%
CGACCAACCGTACAAGATGA+TGG + Chr3:72360098-72360117 MsG0380015597.01.T01:CDS 50.0%
CTACGTCCTACGTGACTGAA+AGG - Chr3:72359274-72359293 None:intergenic 50.0%
CTACGTGACTGAAAGGTCAC+AGG - Chr3:72359267-72359286 None:intergenic 50.0%
CTCCTTTGTCCGGTGGAAAA+TGG - Chr3:72358512-72358531 None:intergenic 50.0%
CTGTGACCTTTCAGTCACGT+AGG + Chr3:72359265-72359284 MsG0380015597.01.T01:intron 50.0%
GAAGAGTCCTAACCTTGGTC+GGG + Chr3:72357462-72357481 MsG0380015597.01.T01:intron 50.0%
GAATACCACCAACAGCAGGA+AGG - Chr3:72361571-72361590 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - Chr3:72358695-72358714 None:intergenic 50.0%
GCAACCGGGGGAACTAAAAA+GGG - Chr3:72356438-72356457 None:intergenic 50.0%
GGTAAGGCTGCATACAATCC+TGG - Chr3:72359208-72359227 None:intergenic 50.0%
GTCCCCACCATCATCTTGTA+CGG - Chr3:72360108-72360127 None:intergenic 50.0%
TAGCAGCCAAGGCTGATAGA+GGG - Chr3:72361362-72361381 None:intergenic 50.0%
TAGGTACCCTCTATCAGCCT+TGG + Chr3:72361353-72361372 MsG0380015597.01.T01:three_prime_UTR 50.0%
TAGTGGCTGCCCAAGTTCTT+CGG + Chr3:72360541-72360560 MsG0380015597.01.T01:CDS 50.0%
TATGAAGGGGAAACCCTTGG+AGG - Chr3:72356951-72356970 None:intergenic 50.0%
TCTATCAGCCTTGGCTGCTA+CGG + Chr3:72361362-72361381 MsG0380015597.01.T01:three_prime_UTR 50.0%
TGACCCCACTTAGTGGGATA+AGG + Chr3:72359125-72359144 MsG0380015597.01.T01:intron 50.0%
TGAGGCGGAGGAAGAGAAAA+AGG - Chr3:72358477-72358496 None:intergenic 50.0%
TGGTTGCGAGGTTGAAACGA+CGG - Chr3:72358449-72358468 None:intergenic 50.0%
! ACAAAGCCTGAATGGTGGGA+TGG + Chr3:72359723-72359742 MsG0380015597.01.T01:intron 50.0%
! CATTTTCCACCGGACAAAGG+AGG + Chr3:72358510-72358529 MsG0380015597.01.T01:CDS 50.0%
! CCAACCGTACAAGATGATGG+TGG + Chr3:72360101-72360120 MsG0380015597.01.T01:CDS 50.0%
! CGGTTTTTGAATCGAGGCAG+GGG - Chr3:72359861-72359880 None:intergenic 50.0%
! CTCCATTTTCCACCGGACAA+AGG + Chr3:72358507-72358526 MsG0380015597.01.T01:CDS 50.0%
! CTGTTTTGCTTGAGATGCCG+GGG + Chr3:72356811-72356830 MsG0380015597.01.T01:intron 50.0%
! GAGAATTCATGGCGGAACGA+GGG - Chr3:72358634-72358653 None:intergenic 50.0%
! GTTTTCCTTCCTGCTGTTGG+TGG + Chr3:72361563-72361582 MsG0380015597.01.T01:three_prime_UTR 50.0%
!! TCTTCGGTGACTCTGAAGTC+AGG + Chr3:72360557-72360576 MsG0380015597.01.T01:CDS 50.0%
!!! TTTTTAGTTCCCCCGGTTGC+TGG + Chr3:72356438-72356457 MsG0380015597.01.T01:intron 50.0%
ACCAAGAACCGTAGCAGCCA+AGG - Chr3:72361373-72361392 None:intergenic 55.0%
AGGCTGTCTGTCGTGTTCGT+AGG + Chr3:72356491-72356510 MsG0380015597.01.T01:intron 55.0%
CATAGTCCTCCTTTGTCCGG+TGG - Chr3:72358519-72358538 None:intergenic 55.0%
CCGCACCCTGAATTAAGGTC+AGG - Chr3:72359183-72359202 None:intergenic 55.0%
CGCCCCAATGTTATCTGGCT+TGG - Chr3:72361615-72361634 None:intergenic 55.0%
CGTCACAAGTAGGCAGCTGA+GGG + Chr3:72359431-72359450 MsG0380015597.01.T01:intron 55.0%
CGTTGAGATGATCCCGACCA+AGG - Chr3:72357477-72357496 None:intergenic 55.0%
GAGAGAGAGAGAGAGAGAGG+GGG - Chr3:72358693-72358712 None:intergenic 55.0%
GCGCTACCAACATCCATGAC+AGG - Chr3:72358599-72358618 None:intergenic 55.0%
GGAACGAGGGTTCGGGAAAT+CGG - Chr3:72358621-72358640 None:intergenic 55.0%
GTAGCAGCCAAGGCTGATAG+AGG - Chr3:72361363-72361382 None:intergenic 55.0%
TCGTCACAAGTAGGCAGCTG+AGG + Chr3:72359430-72359449 MsG0380015597.01.T01:intron 55.0%
TGCTTGAGATGCCGGGGATA+TGG + Chr3:72356817-72356836 MsG0380015597.01.T01:intron 55.0%
TGGCTCCGCACCCTGAATTA+AGG - Chr3:72359188-72359207 None:intergenic 55.0%
TTAATTCAGGGTGCGGAGCC+AGG + Chr3:72359187-72359206 MsG0380015597.01.T01:intron 55.0%
! ACAACGTCGTTTGGAGCAGG+AGG + Chr3:72358246-72358265 MsG0380015597.01.T01:intron 55.0%
! GGAGAATTCATGGCGGAACG+AGG - Chr3:72358635-72358654 None:intergenic 55.0%
! TTCATGGCGGAACGAGGGTT+CGG - Chr3:72358629-72358648 None:intergenic 55.0%
CTACTAGCTAGGGGGAGCCT+TGG - Chr3:72359316-72359335 None:intergenic 60.0%
GCCTTGGCTGCTACGGTTCT+TGG + Chr3:72361369-72361388 MsG0380015597.01.T01:three_prime_UTR 60.0%
TGAATCGAGGCAGGGGCAGA+GGG - Chr3:72359854-72359873 None:intergenic 60.0%
TTGAATCGAGGCAGGGGCAG+AGG - Chr3:72359855-72359874 None:intergenic 60.0%
! TCATGGCGGAACGAGGGTTC+GGG - Chr3:72358628-72358647 None:intergenic 60.0%
!! GAAACGACGGTGTTGCGCCC+AGG - Chr3:72358436-72358455 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 72356049 72361747 72356049 ID=MsG0380015597.01;Name=MsG0380015597.01
Chr3 mRNA 72356049 72361747 72356049 ID=MsG0380015597.01.T01;Parent=MsG0380015597.01;Name=MsG0380015597.01.T01;_AED=0.37;_eAED=0.38;_QI=98|0.8|0.83|1|0.8|0.66|6|607|290
Chr3 exon 72356049 72356079 72356049 ID=MsG0380015597.01.T01:exon:24005;Parent=MsG0380015597.01.T01
Chr3 exon 72358247 72358683 72358247 ID=MsG0380015597.01.T01:exon:24006;Parent=MsG0380015597.01.T01
Chr3 exon 72358794 72358969 72358794 ID=MsG0380015597.01.T01:exon:24007;Parent=MsG0380015597.01.T01
Chr3 exon 72360047 72360150 72360047 ID=MsG0380015597.01.T01:exon:24008;Parent=MsG0380015597.01.T01
Chr3 exon 72360460 72360613 72360460 ID=MsG0380015597.01.T01:exon:24009;Parent=MsG0380015597.01.T01
Chr3 exon 72361072 72361747 72361072 ID=MsG0380015597.01.T01:exon:24010;Parent=MsG0380015597.01.T01
Chr3 five_prime_UTR 72356049 72356079 72356049 ID=MsG0380015597.01.T01:five_prime_utr;Parent=MsG0380015597.01.T01
Chr3 five_prime_UTR 72358247 72358313 72358247 ID=MsG0380015597.01.T01:five_prime_utr;Parent=MsG0380015597.01.T01
Chr3 CDS 72358314 72358683 72358314 ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3 CDS 72358794 72358969 72358794 ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3 CDS 72360047 72360150 72360047 ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3 CDS 72360460 72360613 72360460 ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3 CDS 72361072 72361140 72361072 ID=MsG0380015597.01.T01:cds;Parent=MsG0380015597.01.T01
Chr3 three_prime_UTR 72361141 72361747 72361141 ID=MsG0380015597.01.T01:three_prime_utr;Parent=MsG0380015597.01.T01
Gene Sequence

>MsG0380015597.01.T01

ATGATGACAGTAGTGAGGGGTAGTGTTTTCCGATTAGGAAGACGATTACGACTAGGAATCTTAAATTCCCTCAAACCAGAGACTAATCACAATAATCTAAATACAAATTGTTCTCGCTGCCTGGGCGCAACACCGTCGTTTCAACCTCGCAACCACAATGCCTTTTTCTCTTCCTCCGCCTCACCATTTTCTTCTCCATTTTCCACCGGACAAAGGAGGACTATGTTTATCCAAACACAGTCCACTCCAAATCCAGAGTCTCTTATGTTTCATCCTGGTAAACCTGTCATGGATGTTGGTAGCGCCGATTTCCCGAACCCTCGTTCCGCCATGAATTCTCCTCTCGCTAAATCAATTTTCACGATTGACGGAATTACTCGTGTTTTCTTTGGATCCGATTTTGTCACTGTTACCAAATCAGAAGATGCATCATGGGAATTTCTGAAGCCTGAAATCTTTGCTGCTATTATGGATTTCTACTCTTCTGGTGAACCGCTCTTTCTAGATTCTCAAGCTGCCTCATCCAAAGACACAGCAATTCACGATGATGATTCTGAAACAGTTGCGATGATCAAGGAACTTTTGGAGACTCGTATTCGACCAACCGTACAAGATGATGGTGGGGACATTGTATATTGTGGTTTTGATCCAATGGCTCTTTTACTTGCTTTTTATATTGTGGTTTTCTCTAGAGATACGGGGATCGTCAAACTTAAAATGCAAGGAGCGTGTAGTGGCTGCCCAAGTTCTTCGGTGACTCTGAAGTCAGGCATTGAGAATATGCTGATGCATTATGTACCTGAGGTCAAAGGTGTGGAACAAGAATTAGATGGCGAGGAAGAGGAAGCAGCTTTAAGTGGACAAACTGAGTAG
Protein sequence

>MsG0380015597.01.T01

MMTVVRGSVFRLGRRLRLGILNSLKPETNHNNLNTNCSRCLGATPSFQPRNHNAFFSSSASPFSSPFSTGQRRTMFIQTQSTPNPESLMFHPGKPVMDVGSADFPNPRSAMNSPLAKSIFTIDGITRVFFGSDFVTVTKSEDASWEFLKPEIFAAIMDFYSSGEPLFLDSQAASSKDTAIHDDDSETVAMIKELLETRIRPTVQDDGGDIVYCGFDPMALLLAFYIVVFSRDTGIVKLKMQGACSGCPSSSVTLKSGIENMLMHYVPEVKGVEQELDGEEEEAALSGQTE*