AlfalfaGEDB | MsG0380015802.01

M. sativa cultivar ZhongmuNo.1 / MsG0380015802.01

KEGG: K22068
GO: GO:0005506 GO:0016226 GO:0051536
PFAM: PF01592

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015802.01.T01	XP_003601257.1	97.561	164	4	0	1	164	1	164	3.19E-116	336

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015802.01.T01	O49627	80.392	153	28	2	5	156	7	158	9.66E-84	246

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015802.01.T01	B7FHC6	97.561	164	4	0	1	164	1	164	1.52e-116	336

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048694.01	MsG0380015802.01	0.833969	3.930081e-56	4.599162e-53
MsG0080048695.01	MsG0380015802.01	0.833581	4.913279e-56	5.682341e-53
MsG0080048889.01	MsG0380015802.01	-0.804924	1.710204e-49	8.929893e-47
MsG0080049023.01	MsG0380015802.01	0.805429	1.340682e-49	7.091225e-47
MsG0080049038.01	MsG0380015802.01	0.830515	2.812275e-55	2.969476e-52
MsG0080049076.01	MsG0380015802.01	0.801687	8.006181e-49	3.847455e-46
MsG0180000367.01	MsG0380015802.01	-0.820783	5.715979e-53	4.566197e-50
MsG0180000551.01	MsG0380015802.01	-0.801192	1.011243e-48	4.799462e-46
MsG0180000552.01	MsG0380015802.01	-0.818801	1.621625e-52	1.226030e-49
MsG0180001925.01	MsG0380015802.01	0.833753	4.449746e-56	5.172899e-53
MsG0180003430.01	MsG0380015802.01	-0.808905	2.460842e-50	1.424349e-47
MsG0180004124.01	MsG0380015802.01	0.849596	2.922267e-60	5.567978e-57
MsG0180004125.01	MsG0380015802.01	0.844790	6.079402e-59	9.924871e-56
MsG0180004226.01	MsG0380015802.01	0.850793	1.349088e-60	2.673656e-57
MsG0180004322.01	MsG0380015802.01	0.800630	1.317292e-48	6.163617e-46
MsG0180004559.01	MsG0380015802.01	-0.803715	3.053931e-49	1.545598e-46
MsG0180004737.01	MsG0380015802.01	0.804423	2.176073e-49	1.121491e-46
MsG0180005833.01	MsG0380015802.01	0.811932	5.467569e-51	3.428837e-48
MsG0180006063.01	MsG0380015802.01	0.850822	1.323992e-60	2.626593e-57
MsG0180006191.01	MsG0380015802.01	-0.802017	6.848452e-49	3.318902e-46
MsG0280010854.01	MsG0380015802.01	0.808788	2.607356e-50	1.504444e-47
MsG0280011066.01	MsG0380015802.01	0.821744	3.430840e-53	2.815210e-50
MsG0380013063.01	MsG0380015802.01	0.818001	2.461497e-52	1.820481e-49
MsG0380013928.01	MsG0380015802.01	0.823856	1.105604e-53	9.633272e-51
MsG0380013986.01	MsG0380015802.01	0.810585	1.071265e-50	6.482838e-48
MsG0380013997.01	MsG0380015802.01	0.816265	6.044256e-52	4.262873e-49
MsG0380014016.01	MsG0380015802.01	0.819118	1.373597e-52	1.047679e-49
MsG0380014029.01	MsG0380015802.01	0.827846	1.248425e-54	1.219632e-51
MsG0380014129.01	MsG0380015802.01	0.819025	1.442274e-52	1.097334e-49
MsG0380014735.01	MsG0380015802.01	0.829863	4.056176e-55	4.203897e-52
MsG0380015802.01	MsG0380015828.01	0.802062	6.704866e-49	3.253046e-46
MsG0380015802.01	MsG0380016065.01	0.858736	6.714824e-63	1.731072e-59
MsG0380015802.01	MsG0380016380.01	0.807147	5.826780e-50	3.220851e-47
MsG0380015802.01	MsG0380016935.01	0.812928	3.312353e-51	2.133312e-48
MsG0380015802.01	MsG0380017231.01	-0.810139	1.337057e-50	7.996511e-48
MsG0380015802.01	MsG0380017405.01	0.809877	1.522394e-50	9.043015e-48
MsG0380015802.01	MsG0480019017.01	-0.818419	1.979610e-52	1.481153e-49
MsG0380015802.01	MsG0480019028.01	0.809322	2.003770e-50	1.172851e-47
MsG0380015802.01	MsG0480019540.01	0.818248	2.164556e-52	1.611673e-49
MsG0380015802.01	MsG0480020957.01	-0.812781	3.566314e-51	2.287986e-48
MsG0380015802.01	MsG0480021151.01	0.809240	2.086420e-50	1.218605e-47
MsG0380015802.01	MsG0480021175.01	-0.818799	1.622923e-52	1.226951e-49
MsG0380015802.01	MsG0480021474.01	0.804367	2.234712e-49	1.150141e-46
MsG0380015802.01	MsG0480021912.01	0.818822	1.603795e-52	1.213255e-49
MsG0380015802.01	MsG0480022428.01	-0.800837	1.194741e-48	5.619799e-46
MsG0380015802.01	MsG0480022591.01	0.808487	3.023429e-50	1.730955e-47
MsG0380015802.01	MsG0480023152.01	0.809167	2.163007e-50	1.260842e-47
MsG0380015802.01	MsG0480023244.01	0.814389	1.579703e-51	1.058621e-48
MsG0380015802.01	MsG0480023324.01	-0.800080	1.704356e-48	7.864164e-46
MsG0380015802.01	MsG0580024119.01	-0.802340	5.878228e-49	2.872312e-46
MsG0380015802.01	MsG0580024493.01	0.815566	8.655445e-52	5.988688e-49
MsG0380015802.01	MsG0580025443.01	-0.806303	8.781146e-50	4.749832e-47
MsG0380015802.01	MsG0580025444.01	-0.802028	6.812759e-49	3.302518e-46
MsG0380015802.01	MsG0580025464.01	-0.801843	7.435148e-49	3.587451e-46
MsG0380015802.01	MsG0580025486.01	0.803204	3.898330e-49	1.947207e-46
MsG0380015802.01	MsG0580025573.01	-0.802231	6.189397e-49	3.015880e-46
MsG0380015802.01	MsG0580025620.01	-0.828967	6.696599e-55	6.758982e-52
MsG0380015802.01	MsG0580026162.01	-0.801047	1.082311e-48	5.118438e-46
MsG0380015802.01	MsG0580026237.01	0.804963	1.678363e-49	8.772111e-47
MsG0380015802.01	MsG0580026362.01	0.802773	4.784421e-49	2.363860e-46
MsG0380015802.01	MsG0580029296.01	-0.830219	3.321151e-55	3.477218e-52
MsG0380015802.01	MsG0580029623.01	-0.818503	1.894327e-52	1.420535e-49
MsG0380015802.01	MsG0580029792.01	0.833379	5.517118e-56	6.342725e-53
MsG0380015802.01	MsG0580030179.01	-0.802706	4.938709e-49	2.435885e-46
MsG0380015802.01	MsG0680030635.01	0.803046	4.201903e-49	2.090345e-46
MsG0380015802.01	MsG0680035870.01	0.825929	3.584738e-54	3.313596e-51
MsG0380015802.01	MsG0780038047.01	0.807410	5.125360e-50	2.852720e-47
MsG0380015802.01	MsG0780039642.01	-0.815820	7.600794e-52	5.295355e-49
MsG0380015802.01	MsG0780040266.01	-0.830161	3.431762e-55	3.586845e-52
MsG0380015802.01	MsG0780040977.01	-0.808433	3.104499e-50	1.774916e-47
MsG0380015802.01	MsG0780041121.01	0.800873	1.174904e-48	5.531548e-46
MsG0380015802.01	MsG0780041531.01	0.823586	1.279253e-53	1.106102e-50
MsG0380015802.01	MsG0880042122.01	-0.807256	5.524709e-50	3.062646e-47
MsG0380015802.01	MsG0880043261.01	-0.809161	2.168975e-50	1.264137e-47
MsG0380015802.01	MsG0880044545.01	0.806612	7.560381e-50	4.121680e-47
MsG0380015802.01	MsG0880045188.01	0.802284	6.034715e-49	2.944652e-46
MsG0380015802.01	MsG0880045385.01	0.808904	2.462740e-50	1.425374e-47
MsG0380015802.01	MsG0880045703.01	0.800594	1.339495e-48	6.261665e-46
MsG0380015802.01	MsG0880046469.01	0.806065	9.856942e-50	5.299528e-47
MsG0380015802.01	MsG0880046630.01	0.841847	3.705706e-58	5.515097e-55
MsG0380015802.01	MsG0880046838.01	0.818750	1.665143e-52	1.257188e-49
MsG0280006898.01	MsG0380015802.01	-0.811184	7.948875e-51	4.887522e-48
MsG0280007786.01	MsG0380015802.01	-0.833756	4.443091e-56	5.165727e-53
MsG0280009742.01	MsG0380015802.01	0.820201	7.772393e-53	6.109775e-50
MsG0280009864.01	MsG0380015802.01	0.819645	1.041994e-52	8.064566e-50
MsG0280010142.01	MsG0380015802.01	0.829094	6.236897e-55	6.319203e-52

PPI

Gene1	Gene2	Type
MsG0380015802.01	MsG0180003756.01	PPI
MsG0380015802.01	MsG0380015597.01	PPI
MsG0380015802.01	MsG0880045119.01	PPI
MsG0580027139.01	MsG0380015802.01	PPI
MsG0380015802.01	MsG0580027139.01	PPI
MsG0380015802.01	MsG0180003756.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015802.01.T01	MTR_3g077720	97.561	164	4	0	1	164	1	164	3.87e-120	336
MsG0380015802.01.T01	MTR_3g077730	87.023	131	15	1	32	160	5	135	2.99e-77	227

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380015802.01.T01	AT4G22220	80.392	153	28	2	5	156	7	158	9.84e-85	246
MsG0380015802.01.T01	AT4G04080	70.253	158	45	2	1	157	1	157	2.25e-79	233
MsG0380015802.01.T01	AT3G01020	72.662	139	38	0	26	164	25	163	4.02e-71	212

Find 59 sgRNAs with CRISPR-Local

Find 201 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATCGAAGGATCCAACATTTC+GGG	0.257939	3:-75228986	None:intergenic
CAGTACTTACGTGTTCTTAA+TGG	0.261409	3:-75229373	None:intergenic
GCAGCTACTGAATGGGTAAA+AGG	0.280013	3:+75229327	MsG0380015802.01.T01:intron
TGCATGATTTCTTCCATTGC+TGG	0.291911	3:+75231334	MsG0380015802.01.T01:exon
GATGCTCGCTTTAAGACTTT+TGG	0.312604	3:+75229108	MsG0380015802.01.T01:CDS
TATCGAAGGATCCAACATTT+CGG	0.324398	3:-75228987	None:intergenic
ATGCTGCAGTGAAGCTTAAC+TGG	0.354352	3:-75231221	None:intergenic
AGACGCCAAATCCAGCGATT+AGG	0.369036	3:+75228914	MsG0380015802.01.T01:CDS
AGAATCCTAATCGCTGGATT+TGG	0.371565	3:-75228919	None:intergenic
CAAATCAAGGTTGATGAGAA+TGG	0.396788	3:+75229075	MsG0380015802.01.T01:CDS
AGACTATGACAAATACAATA+TGG	0.398577	3:-75231522	None:intergenic
GATGAAGTTTCTTGTTTGAA+TGG	0.409246	3:+75231565	MsG0380015802.01.T01:three_prime_UTR
TATAAATACTTGTATCGGCT+TGG	0.437369	3:+75231489	MsG0380015802.01.T01:three_prime_UTR
TGCCTCGGCTACTGCGGCCA+CGG	0.446467	3:+75231295	MsG0380015802.01.T01:CDS
GGTTTCAAACAAAATCGTTA+AGG	0.452051	3:-75231669	None:intergenic
ATGGTGGGAACTGGTCTTGT+TGG	0.461756	3:+75229021	MsG0380015802.01.T01:CDS
AAATCAAGGTTGATGAGAAT+GGG	0.463058	3:+75229076	MsG0380015802.01.T01:CDS
CGCAAAGAAACTCGTGCAAA+CGG	0.463462	3:+75228882	MsG0380015802.01.T01:CDS
GACGTTATGACAATACAATA+TGG	0.469350	3:-75231465	None:intergenic
TGTTTGAATGGTTTGTTCGT+AGG	0.472869	3:+75231577	MsG0380015802.01.T01:three_prime_UTR
AATGATCCGATGGTGGGAAC+TGG	0.473170	3:+75229012	MsG0380015802.01.T01:CDS
CTTATAAATACTTGTATCGC+GGG	0.500770	3:+75231543	MsG0380015802.01.T01:three_prime_UTR
CGTCTTATAAATACTTGTAT+CGG	0.511347	3:+75231484	MsG0380015802.01.T01:three_prime_UTR
GCCTCGGCTACTGCGGCCAC+GGG	0.517239	3:+75231296	MsG0380015802.01.T01:CDS
TGTCATGAAGCTTCAAATCA+AGG	0.528073	3:+75229062	MsG0380015802.01.T01:CDS
TACGACAATCCCCGAAATGT+TGG	0.530745	3:+75228976	MsG0380015802.01.T01:CDS
CGTGGAAGAATCCTAATCGC+TGG	0.531980	3:-75228925	None:intergenic
ATGGGTAAAAGGAAAGCAAA+TGG	0.536082	3:+75229338	MsG0380015802.01.T01:CDS
TGCAGTGAAGCTTAACTGGC+GGG	0.542392	3:-75231217	None:intergenic
TCCCGTGGCCGCAGTAGCCG+AGG	0.550070	3:-75231297	None:intergenic
TTTCATCATCATTCCAGCAA+TGG	0.552059	3:-75231347	None:intergenic
AATCGACTCATTAGCACCAT+TGG	0.564226	3:-75231390	None:intergenic
CGATAAGAATGATCCGATGG+TGG	0.569162	3:+75229005	MsG0380015802.01.T01:CDS
GCTATTGCTTCATCGTCCGT+TGG	0.572466	3:+75229141	MsG0380015802.01.T01:CDS
TTATGAAGCTAAGCGTGCCT+CGG	0.575006	3:+75231280	MsG0380015802.01.T01:CDS
CTTCATGACATCACCACAAG+CGG	0.590457	3:-75229049	None:intergenic
ATTCTACCACGAGAGGGTGG+TGG	0.593190	3:+75228948	MsG0380015802.01.T01:CDS
TAAGCGTGCCTCGGCTACTG+CGG	0.598393	3:+75231289	MsG0380015802.01.T01:CDS
TTCATGACATCACCACAAGC+GGG	0.602959	3:-75229048	None:intergenic
TCTTATAAATACTTGTATCG+CGG	0.603648	3:+75231542	MsG0380015802.01.T01:three_prime_UTR
TCGTTAGTATGATTCTCCAA+TGG	0.604384	3:+75231374	MsG0380015802.01.T01:three_prime_UTR
AAAAGGAAAGCAAATGGAGG+AGG	0.604892	3:+75229344	MsG0380015802.01.T01:CDS
CATCGGATCATTCTTATCGA+AGG	0.605249	3:-75229001	None:intergenic
ACAAGACCAGTTCCCACCAT+CGG	0.608536	3:-75229018	None:intergenic
TCACTGCAGCATGCTTGCTG+AGG	0.608636	3:+75231232	MsG0380015802.01.T01:CDS
TCGAAGGATCCAACATTTCG+GGG	0.618047	3:-75228985	None:intergenic
GATAAGAATGATCCGATGGT+GGG	0.625202	3:+75229006	MsG0380015802.01.T01:CDS
TCCACGATTCTACCACGAGA+GGG	0.625238	3:+75228942	MsG0380015802.01.T01:CDS
AGTGGCAGATTTGTCTCCCG+TGG	0.628353	3:-75231312	None:intergenic
CTGCAGTGAAGCTTAACTGG+CGG	0.631259	3:-75231218	None:intergenic
ACCCTCTCGTGGTAGAATCG+TGG	0.631852	3:-75228943	None:intergenic
CTTCGATAAGAATGATCCGA+TGG	0.633992	3:+75229002	MsG0380015802.01.T01:CDS
CTTGTTGGTGCACCCGCTTG+TGG	0.637545	3:+75229036	MsG0380015802.01.T01:CDS
AGTGATCCACCACCCTCTCG+TGG	0.652272	3:-75228954	None:intergenic
TTCCACGATTCTACCACGAG+AGG	0.658430	3:+75228941	MsG0380015802.01.T01:CDS
CAATGGAAGAAATCATGCAG+TGG	0.672265	3:-75231330	None:intergenic
AACGGACGATGAAGCAATAG+CGG	0.675366	3:-75229139	None:intergenic
GGTAAAAGGAAAGCAAATGG+AGG	0.675966	3:+75229341	MsG0380015802.01.T01:CDS
ACGATTCTACCACGAGAGGG+TGG	0.684824	3:+75228945	MsG0380015802.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAATCAAATTCAATAAAA+AGG	-	Chr3:75229246-75229265	None:intergenic	10.0%
!!	ATAATCAAATTCAATAAAAA+GGG	-	Chr3:75229245-75229264	None:intergenic	10.0%
!!!	ACAATTTTTCATATAAAAAT+TGG	-	Chr3:75229788-75229807	None:intergenic	10.0%
!!	CCAAAATATAATAAAACTTA+GGG	-	Chr3:75230367-75230386	None:intergenic	15.0%
!!!	CAGGATTTTTTTTTTTTTTA+GGG	+	Chr3:75229202-75229221	MsG0380015802.01.T01:intron	15.0%
!!!	CCTAAGTTTTATTATATTTT+GGG	+	Chr3:75230365-75230384	MsG0380015802.01.T01:intron	15.0%
!!!	GATAATAGAGATTTAAAATA+AGG	+	Chr3:75230095-75230114	MsG0380015802.01.T01:intron	15.0%
!!!	TCAGGATTTTTTTTTTTTTT+AGG	+	Chr3:75229201-75229220	MsG0380015802.01.T01:intron	15.0%
!!!	TGCTATTTAAAAAAATAGAA+GGG	-	Chr3:75229655-75229674	None:intergenic	15.0%
!!	AAAAAAAAAAAGAAACCAGA+AGG	-	Chr3:75230998-75231017	None:intergenic	20.0%
!!	AAATTAATAGCTTTCAACAA+TGG	+	Chr3:75230123-75230142	MsG0380015802.01.T01:intron	20.0%
!!	AATAAACTCTTTATTCAAAC+AGG	-	Chr3:75230610-75230629	None:intergenic	20.0%
!!	ATAAACTCTTTATTCAAACA+GGG	-	Chr3:75230609-75230628	None:intergenic	20.0%
!!	ATATAAAAATTGGAATCCAA+AGG	-	Chr3:75229778-75229797	None:intergenic	20.0%
!!	ATTGTCTATTATAAAACTAG+AGG	+	Chr3:75230292-75230311	MsG0380015802.01.T01:intron	20.0%
!!	CCCAAAATATAATAAAACTT+AGG	-	Chr3:75230368-75230387	None:intergenic	20.0%
!!	GCTATTTAAAAAAATAGAAG+GGG	-	Chr3:75229654-75229673	None:intergenic	20.0%
!!	TATTTCCAAATACATGATTT+GGG	+	Chr3:75229840-75229859	MsG0380015802.01.T01:intron	20.0%
!!	TTGTCTATTATAAAACTAGA+GGG	+	Chr3:75230293-75230312	MsG0380015802.01.T01:intron	20.0%
!!!	AAGATATTTTGTTGGTTTTA+TGG	+	Chr3:75230563-75230582	MsG0380015802.01.T01:intron	20.0%
!!!	AGTTTTAACAGATCAATTAA+CGG	+	Chr3:75230216-75230235	MsG0380015802.01.T01:intron	20.0%
!!!	ATCTATTTTAAGAGACTTTA+GGG	+	Chr3:75230263-75230282	MsG0380015802.01.T01:intron	20.0%
!!!	CCCTAAGTTTTATTATATTT+TGG	+	Chr3:75230364-75230383	MsG0380015802.01.T01:intron	20.0%
!!!	GTGCTATTTAAAAAAATAGA+AGG	-	Chr3:75229656-75229675	None:intergenic	20.0%
!!!	GTTTCAGTAAATTAATTTGA+CGG	-	Chr3:75229711-75229730	None:intergenic	20.0%
!!!	TATCTATTTTAAGAGACTTT+AGG	+	Chr3:75230262-75230281	MsG0380015802.01.T01:intron	20.0%
!!!	TTGTTAACAATTTCCTTTTT+TGG	-	Chr3:75230429-75230448	None:intergenic	20.0%
!	AATAAGTGCTTATATGATCA+TGG	-	Chr3:75230652-75230671	None:intergenic	25.0%
!	ACATTTCTTCTTGAAATTGA+TGG	+	Chr3:75230485-75230504	MsG0380015802.01.T01:intron	25.0%
!	AGACTATGACAAATACAATA+TGG	-	Chr3:75231525-75231544	None:intergenic	25.0%
!	ATGTATTTGGAAATACGAAA+AGG	-	Chr3:75229835-75229854	None:intergenic	25.0%
!	ATTAACGGTATTAACTTAGA+AGG	+	Chr3:75230231-75230250	MsG0380015802.01.T01:intron	25.0%
!	ATTATTGTGAATCAGTTCAT+TGG	+	Chr3:75229746-75229765	MsG0380015802.01.T01:intron	25.0%
!	CGTCTTATAAATACTTGTAT+CGG	+	Chr3:75231484-75231503	MsG0380015802.01.T01:three_prime_UTR	25.0%
!	CTCTATTATCATAATTCTCT+CGG	-	Chr3:75230085-75230104	None:intergenic	25.0%
!	GATAAATGCTCAATAAAAAG+AGG	+	Chr3:75229963-75229982	MsG0380015802.01.T01:intron	25.0%
!	GTATTTCCAAATACATGATT+TGG	+	Chr3:75229839-75229858	MsG0380015802.01.T01:intron	25.0%
!	TCAAATAAGTTAATCCAAAC+AGG	+	Chr3:75230860-75230879	MsG0380015802.01.T01:intron	25.0%
!	TCAACTTGTCATCATTAAAA+AGG	-	Chr3:75230927-75230946	None:intergenic	25.0%
!	TCTTATAAATACTTGTATCG+CGG	+	Chr3:75231486-75231505	MsG0380015802.01.T01:three_prime_UTR	25.0%
!	TGTCTATTATAAAACTAGAG+GGG	+	Chr3:75230294-75230313	MsG0380015802.01.T01:intron	25.0%
!	TTAACGGTATTAACTTAGAA+GGG	+	Chr3:75230232-75230251	MsG0380015802.01.T01:intron	25.0%
!	TTATTGTGAATCAGTTCATT+GGG	+	Chr3:75229747-75229766	MsG0380015802.01.T01:intron	25.0%
!	TTTGTTAATGCTTCTATGAT+TGG	+	Chr3:75231118-75231137	MsG0380015802.01.T01:intron	25.0%
!!	TATATGAATTTTGTAGAAGG+TGG	+	Chr3:75230508-75230527	MsG0380015802.01.T01:intron	25.0%
!!	TGGTATATGAATTTTGTAGA+AGG	+	Chr3:75230505-75230524	MsG0380015802.01.T01:intron	25.0%
!!	TTATTCAGACTTTTCTTGAT+TGG	+	Chr3:75231432-75231451	MsG0380015802.01.T01:three_prime_UTR	25.0%
!!	TTCTGAGCTAATAAGTTTTA+GGG	+	Chr3:75229582-75229601	MsG0380015802.01.T01:intron	25.0%
!!!	ATTTTGTTGGTTTTATGGAT+GGG	+	Chr3:75230568-75230587	MsG0380015802.01.T01:intron	25.0%
!!!	CTTTTTAAGCATACCAAAAA+AGG	+	Chr3:75230413-75230432	MsG0380015802.01.T01:intron	25.0%
!!!	TATTTTGTTGGTTTTATGGA+TGG	+	Chr3:75230567-75230586	MsG0380015802.01.T01:intron	25.0%
!!!	TCTATTTTAAGAGACTTTAG+GGG	+	Chr3:75230264-75230283	MsG0380015802.01.T01:intron	25.0%
!!!	TTCATGTATTGGTTTGTTAT+AGG	+	Chr3:75229174-75229193	MsG0380015802.01.T01:intron	25.0%
	AAACACTTGTGACACTATTT+GGG	-	Chr3:75230824-75230843	None:intergenic	30.0%
	AAATAGTGTCACAAGTGTTT+AGG	+	Chr3:75230824-75230843	MsG0380015802.01.T01:intron	30.0%
	AGAAAGAACAAATACCTTGT+GGG	+	Chr3:75229941-75229960	MsG0380015802.01.T01:intron	30.0%
	ATACATTTACGATAACCTCA+GGG	-	Chr3:75229625-75229644	None:intergenic	30.0%
	ATATTGTTTGCACTTGTGAT+TGG	+	Chr3:75229493-75229512	MsG0380015802.01.T01:intron	30.0%
	CTTATAAATACTTGTATCGC+GGG	+	Chr3:75231543-75231562	MsG0380015802.01.T01:three_prime_UTR	30.0%
	GACGTTATGACAATACAATA+TGG	-	Chr3:75231468-75231487	None:intergenic	30.0%
	GCAAAAAAGAACAAAACCAA+GGG	-	Chr3:75230886-75230905	None:intergenic	30.0%
	GTAAGATTAAATCCTACAGA+CGG	-	Chr3:75231076-75231095	None:intergenic	30.0%
	GTCATTTAAAGAGATCTCAA+GGG	+	Chr3:75230325-75230344	MsG0380015802.01.T01:intron	30.0%
	TAAACACTTGTGACACTATT+TGG	-	Chr3:75230825-75230844	None:intergenic	30.0%
	TAAGATTAAATCCTACAGAC+GGG	-	Chr3:75231075-75231094	None:intergenic	30.0%
	TATTGTTTGCACTTGTGATT+GGG	+	Chr3:75229494-75229513	MsG0380015802.01.T01:intron	30.0%
	TCAACAATGGCTGAAATATT+GGG	+	Chr3:75230136-75230155	MsG0380015802.01.T01:intron	30.0%
	TGCAAAAAAGAACAAAACCA+AGG	-	Chr3:75230887-75230906	None:intergenic	30.0%
	TGGAAATACGAAAAGGAATT+GGG	-	Chr3:75229828-75229847	None:intergenic	30.0%
	TTCAACAATGGCTGAAATAT+TGG	+	Chr3:75230135-75230154	MsG0380015802.01.T01:intron	30.0%
	TTGGAAATACGAAAAGGAAT+TGG	-	Chr3:75229829-75229848	None:intergenic	30.0%
	TTGTTCTTTCTGTATGAACA+GGG	-	Chr3:75229932-75229951	None:intergenic	30.0%
	TTTCATAAGCTATCCATGAT+AGG	-	Chr3:75230751-75230770	None:intergenic	30.0%
	TTTGTTCTTTCTGTATGAAC+AGG	-	Chr3:75229933-75229952	None:intergenic	30.0%
!	ATCTGAAACATGAGAATAAG+AGG	+	Chr3:75230023-75230042	MsG0380015802.01.T01:intron	30.0%
!	GATGAAGTTTCTTGTTTGAA+TGG	+	Chr3:75231565-75231584	MsG0380015802.01.T01:three_prime_UTR	30.0%
!	GTAGAGCAAAGATATTTTGT+TGG	+	Chr3:75230555-75230574	MsG0380015802.01.T01:intron	30.0%
!	TAAAAAAATAGAAGGGGTGT+TGG	-	Chr3:75229648-75229667	None:intergenic	30.0%
!	TCAGTAAATTAATTTGACGG+AGG	-	Chr3:75229708-75229727	None:intergenic	30.0%
!	TGTCATTTAAAGAGATCTCA+AGG	+	Chr3:75230324-75230343	MsG0380015802.01.T01:intron	30.0%
!	TTAAAGACAATTTTCACCCA+AGG	-	Chr3:75230176-75230195	None:intergenic	30.0%
!!	AAATCAAGGTTGATGAGAAT+GGG	+	Chr3:75229076-75229095	MsG0380015802.01.T01:CDS	30.0%
!!	CTTTTCCTTTTTTGTGTTTG+TGG	-	Chr3:75228845-75228864	None:intergenic	30.0%
!!	GTTCTGAGCTAATAAGTTTT+AGG	+	Chr3:75229581-75229600	MsG0380015802.01.T01:intron	30.0%
!!	TACAATGTGTTCATTTTAGC+TGG	-	Chr3:75229882-75229901	None:intergenic	30.0%
!!	TATAAATACTTGTATCGGCT+TGG	+	Chr3:75231489-75231508	MsG0380015802.01.T01:three_prime_UTR	30.0%
!!	TGGTTTGTTATAGGAAATTC+AGG	+	Chr3:75229183-75229202	MsG0380015802.01.T01:intron	30.0%
!!!	ATCTTTAACAGCTGCTTTTA+TGG	-	Chr3:75231261-75231280	None:intergenic	30.0%
!!!	TGCTGTTTTATAACCTATCA+TGG	+	Chr3:75230735-75230754	MsG0380015802.01.T01:intron	30.0%
!!!	TTTTGTTGGTTTTATGGATG+GGG	+	Chr3:75230569-75230588	MsG0380015802.01.T01:intron	30.0%
	AACATAGCAGCAAAAGATGA+TGG	-	Chr3:75230970-75230989	None:intergenic	35.0%
	AATGACATCCATAACAAGCA+TGG	+	Chr3:75229547-75229566	MsG0380015802.01.T01:intron	35.0%
	AGGCCATTATTCTTTGATGA+AGG	+	Chr3:75230059-75230078	MsG0380015802.01.T01:intron	35.0%
	ATGGGTAAAAGGAAAGCAAA+TGG	+	Chr3:75229338-75229357	MsG0380015802.01.T01:CDS	35.0%
	ATTTAAAGAGATCTCAAGGG+AGG	+	Chr3:75230328-75230347	MsG0380015802.01.T01:intron	35.0%
	CAGAAAGAACAAATACCTTG+TGG	+	Chr3:75229940-75229959	MsG0380015802.01.T01:intron	35.0%
	CAGTACTTACGTGTTCTTAA+TGG	-	Chr3:75229376-75229395	None:intergenic	35.0%
	CATTAAGAACACGTAAGTAC+TGG	+	Chr3:75229374-75229393	MsG0380015802.01.T01:intron	35.0%
	GATACATTTACGATAACCTC+AGG	-	Chr3:75229626-75229645	None:intergenic	35.0%
	GGCATGATTCATAAACCAAA+AGG	-	Chr3:75231054-75231073	None:intergenic	35.0%
	TACATTTACGATAACCTCAG+GGG	-	Chr3:75229624-75229643	None:intergenic	35.0%
	TATCGAAGGATCCAACATTT+CGG	-	Chr3:75228990-75229009	None:intergenic	35.0%
	TATTGAGCATTTATCCCACA+AGG	-	Chr3:75229958-75229977	None:intergenic	35.0%
	TCGTTAGTATGATTCTCCAA+TGG	+	Chr3:75231374-75231393	MsG0380015802.01.T01:three_prime_UTR	35.0%
	TGCAAATTTGTGTCTTTGTC+TGG	+	Chr3:75229418-75229437	MsG0380015802.01.T01:intron	35.0%
	TGTCATGAAGCTTCAAATCA+AGG	+	Chr3:75229062-75229081	MsG0380015802.01.T01:CDS	35.0%
	TTCCACCACAAACACAAAAA+AGG	+	Chr3:75228837-75228856	MsG0380015802.01.T01:five_prime_UTR	35.0%
	TTTCATCATCATTCCAGCAA+TGG	-	Chr3:75231350-75231369	None:intergenic	35.0%
!	TACTGTTTCCATGCTTGTTA+TGG	-	Chr3:75229558-75229577	None:intergenic	35.0%
!	TTTAGCTGGCTTAAACATGA+TGG	-	Chr3:75229868-75229887	None:intergenic	35.0%
!!	ATTTTAAGAGACTTTAGGGG+AGG	+	Chr3:75230267-75230286	MsG0380015802.01.T01:intron	35.0%
!!	CAAATCAAGGTTGATGAGAA+TGG	+	Chr3:75229075-75229094	MsG0380015802.01.T01:CDS	35.0%
!!	GCTTCTATGATTGGTAGTTT+TGG	+	Chr3:75231127-75231146	MsG0380015802.01.T01:intron	35.0%
!!	GGTATGCTTAAAAAGTGTTG+CGG	-	Chr3:75230408-75230427	None:intergenic	35.0%
!!	GTATGCTTAAAAAGTGTTGC+GGG	-	Chr3:75230407-75230426	None:intergenic	35.0%
!!	TATGCTTAAAAAGTGTTGCG+GGG	-	Chr3:75230406-75230425	None:intergenic	35.0%
!!	TGTTTGAATGGTTTGTTCGT+AGG	+	Chr3:75231577-75231596	MsG0380015802.01.T01:three_prime_UTR	35.0%
!!	TTTTGTAGAAGGTGGATTTC+TGG	+	Chr3:75230516-75230535	MsG0380015802.01.T01:intron	35.0%
!!!	GTAGGTCGTTTTTCATGTAT+TGG	+	Chr3:75229163-75229182	MsG0380015802.01.T01:intron	35.0%
!!!	TTCCTTTTTTGTGTTTGTGG+TGG	-	Chr3:75228842-75228861	None:intergenic	35.0%
	AAAAGGAAAGCAAATGGAGG+AGG	+	Chr3:75229344-75229363	MsG0380015802.01.T01:CDS	40.0%
	ACAATGGCTGAAATATTGGG+TGG	+	Chr3:75230139-75230158	MsG0380015802.01.T01:intron	40.0%
	ACATGAGAATAAGAGGTCTG+CGG	+	Chr3:75230030-75230049	MsG0380015802.01.T01:intron	40.0%
	ACCATATTCTTCTGTGCTCT+AGG	+	Chr3:75230458-75230477	MsG0380015802.01.T01:intron	40.0%
	ACTTGTGATTGGGTGAAGAA+TGG	+	Chr3:75229504-75229523	MsG0380015802.01.T01:intron	40.0%
	AGAATCCTAATCGCTGGATT+TGG	-	Chr3:75228922-75228941	None:intergenic	40.0%
	ATCGAAGGATCCAACATTTC+GGG	-	Chr3:75228989-75229008	None:intergenic	40.0%
	ATGGATGGGGTTTGAAGATA+TGG	+	Chr3:75230582-75230601	MsG0380015802.01.T01:intron	40.0%
	CAATGGAAGAAATCATGCAG+TGG	-	Chr3:75231333-75231352	None:intergenic	40.0%
	CATCGGATCATTCTTATCGA+AGG	-	Chr3:75229004-75229023	None:intergenic	40.0%
	CATGAAAAACGACCTACCAA+CGG	-	Chr3:75229160-75229179	None:intergenic	40.0%
	CGGCCTTCATCAAAGAATAA+TGG	-	Chr3:75230065-75230084	None:intergenic	40.0%
	CTTCGATAAGAATGATCCGA+TGG	+	Chr3:75229002-75229021	MsG0380015802.01.T01:CDS	40.0%
	GAAGAATGGTTATGTGCTTG+AGG	+	Chr3:75229518-75229537	MsG0380015802.01.T01:intron	40.0%
	GATAAGAATGATCCGATGGT+GGG	+	Chr3:75229006-75229025	MsG0380015802.01.T01:CDS	40.0%
	GGTAAAAGGAAAGCAAATGG+AGG	+	Chr3:75229341-75229360	MsG0380015802.01.T01:CDS	40.0%
	TAGAGCACAGAAGAATATGG+TGG	-	Chr3:75230459-75230478	None:intergenic	40.0%
	TGCATGATTTCTTCCATTGC+TGG	+	Chr3:75231334-75231353	MsG0380015802.01.T01:exon	40.0%
	TGGATGGGGTTTGAAGATAT+GGG	+	Chr3:75230583-75230602	MsG0380015802.01.T01:intron	40.0%
	TGGCACCCAAATCATGTATT+TGG	-	Chr3:75229848-75229867	None:intergenic	40.0%
	TTTGACAGTGTCAAAGGCAA+GGG	-	Chr3:75229685-75229704	None:intergenic	40.0%
!	AATCGACTCATTAGCACCAT+TGG	-	Chr3:75231393-75231412	None:intergenic	40.0%
!	AGTTCATTGGGTATTGCCTT+TGG	+	Chr3:75229759-75229778	MsG0380015802.01.T01:intron	40.0%
!	ATCGTTTTGCAGCTACTGAA+TGG	+	Chr3:75229319-75229338	MsG0380015802.01.T01:intron	40.0%
!	CTGCTATGTTTTCAACCTTC+TGG	+	Chr3:75230980-75230999	MsG0380015802.01.T01:intron	40.0%
!	GACTTTTCTTGATTGGAGCT+AGG	+	Chr3:75231439-75231458	MsG0380015802.01.T01:three_prime_UTR	40.0%
!	TCGTTTTGCAGCTACTGAAT+GGG	+	Chr3:75229320-75229339	MsG0380015802.01.T01:intron	40.0%
!	TTTTCCTTCTTTTCCCTTCC+AGG	+	Chr3:75231024-75231043	MsG0380015802.01.T01:intron	40.0%
!!!	CGCTTTAAGACTTTTGGTTG+TGG	+	Chr3:75229114-75229133	MsG0380015802.01.T01:CDS	40.0%
!!!	GATGCTCGCTTTAAGACTTT+TGG	+	Chr3:75229108-75229127	MsG0380015802.01.T01:CDS	40.0%
!!!	TAAGAGGTCTGCGGTTTTTT+AGG	+	Chr3:75230039-75230058	MsG0380015802.01.T01:intron	40.0%
	AACAAAACCAAGGGCCTGTT+TGG	-	Chr3:75230877-75230896	None:intergenic	45.0%
	AACGGACGATGAAGCAATAG+CGG	-	Chr3:75229142-75229161	None:intergenic	45.0%
	AGTTAATCCAAACAGGCCCT+TGG	+	Chr3:75230867-75230886	MsG0380015802.01.T01:intron	45.0%
	ATGCTGCAGTGAAGCTTAAC+TGG	-	Chr3:75231224-75231243	None:intergenic	45.0%
	ATTTACGATAACCTCAGGGG+AGG	-	Chr3:75229621-75229640	None:intergenic	45.0%
	CATAAACCAAAAGGTCCTCC+TGG	-	Chr3:75231045-75231064	None:intergenic	45.0%
	CGATAAGAATGATCCGATGG+TGG	+	Chr3:75229005-75229024	MsG0380015802.01.T01:CDS	45.0%
	CGCAAAGAAACTCGTGCAAA+CGG	+	Chr3:75228882-75228901	MsG0380015802.01.T01:CDS	45.0%
	CTTCATGACATCACCACAAG+CGG	-	Chr3:75229052-75229071	None:intergenic	45.0%
	GCAGCTACTGAATGGGTAAA+AGG	+	Chr3:75229327-75229346	MsG0380015802.01.T01:intron	45.0%
	GCCTAGAGCACAGAAGAATA+TGG	-	Chr3:75230462-75230481	None:intergenic	45.0%
	GGTGGTTGAGTAGATACCTT+GGG	+	Chr3:75230157-75230176	MsG0380015802.01.T01:intron	45.0%
	GTTTGACAGTGTCAAAGGCA+AGG	-	Chr3:75229686-75229705	None:intergenic	45.0%
	TACGACAATCCCCGAAATGT+TGG	+	Chr3:75228976-75228995	MsG0380015802.01.T01:CDS	45.0%
	TATGAATCATGCCCGTCTGT+AGG	+	Chr3:75231061-75231080	MsG0380015802.01.T01:intron	45.0%
	TCGAAGGATCCAACATTTCG+GGG	-	Chr3:75228988-75229007	None:intergenic	45.0%
	TTATGAAGCTAAGCGTGCCT+CGG	+	Chr3:75231280-75231299	MsG0380015802.01.T01:CDS	45.0%
	TTCATGACATCACCACAAGC+GGG	-	Chr3:75229051-75229070	None:intergenic	45.0%
!!	TAAAAAGTGTTGCGGGGCAT+CGG	-	Chr3:75230400-75230419	None:intergenic	45.0%
	AACCAAAAGGTCCTCCTGGA+AGG	-	Chr3:75231041-75231060	None:intergenic	50.0%
	AATTACACTCTCCTCCCCTG+AGG	+	Chr3:75229607-75229626	MsG0380015802.01.T01:intron	50.0%
	ACAAGACCAGTTCCCACCAT+CGG	-	Chr3:75229021-75229040	None:intergenic	50.0%
	ACCAAAAGGTCCTCCTGGAA+GGG	-	Chr3:75231040-75231059	None:intergenic	50.0%
	AGACGCCAAATCCAGCGATT+AGG	+	Chr3:75228914-75228933	MsG0380015802.01.T01:CDS	50.0%
	CGGAGGTTTGACAGTGTCAA+AGG	-	Chr3:75229691-75229710	None:intergenic	50.0%
	CGTGGAAGAATCCTAATCGC+TGG	-	Chr3:75228928-75228947	None:intergenic	50.0%
	CTGCAGTGAAGCTTAACTGG+CGG	-	Chr3:75231221-75231240	None:intergenic	50.0%
	GCTATTGCTTCATCGTCCGT+TGG	+	Chr3:75229141-75229160	MsG0380015802.01.T01:CDS	50.0%
	GGGTGGTTGAGTAGATACCT+TGG	+	Chr3:75230156-75230175	MsG0380015802.01.T01:intron	50.0%
	TCCACGATTCTACCACGAGA+GGG	+	Chr3:75228942-75228961	MsG0380015802.01.T01:CDS	50.0%
	TCCTCCTGGAAGGGAAAAGA+AGG	-	Chr3:75231031-75231050	None:intergenic	50.0%
	TGCAGTGAAGCTTAACTGGC+GGG	-	Chr3:75231220-75231239	None:intergenic	50.0%
	TTCCACGATTCTACCACGAG+AGG	+	Chr3:75228941-75228960	MsG0380015802.01.T01:CDS	50.0%
	TTGCTTCATCGTCCGTTGGT+AGG	+	Chr3:75229145-75229164	MsG0380015802.01.T01:intron	50.0%
!	TCCTTCTTTTCCCTTCCAGG+AGG	+	Chr3:75231027-75231046	MsG0380015802.01.T01:intron	50.0%
!!	AATGATCCGATGGTGGGAAC+TGG	+	Chr3:75229012-75229031	MsG0380015802.01.T01:CDS	50.0%
!!	ATGGTGGGAACTGGTCTTGT+TGG	+	Chr3:75229021-75229040	MsG0380015802.01.T01:CDS	50.0%
	ACCCTCTCGTGGTAGAATCG+TGG	-	Chr3:75228946-75228965	None:intergenic	55.0%
	ACGATTCTACCACGAGAGGG+TGG	+	Chr3:75228945-75228964	MsG0380015802.01.T01:CDS	55.0%
	AGTGGCAGATTTGTCTCCCG+TGG	-	Chr3:75231315-75231334	None:intergenic	55.0%
	ATTCTACCACGAGAGGGTGG+TGG	+	Chr3:75228948-75228967	MsG0380015802.01.T01:CDS	55.0%
	GACAGTGTCAAAGGCAAGGG+AGG	-	Chr3:75229682-75229701	None:intergenic	55.0%
!	TCACTGCAGCATGCTTGCTG+AGG	+	Chr3:75231232-75231251	MsG0380015802.01.T01:CDS	55.0%
!	TCCCTTCCAGGAGGACCTTT+TGG	+	Chr3:75231036-75231055	MsG0380015802.01.T01:intron	55.0%
	AGTGATCCACCACCCTCTCG+TGG	-	Chr3:75228957-75228976	None:intergenic	60.0%
	CTTGTTGGTGCACCCGCTTG+TGG	+	Chr3:75229036-75229055	MsG0380015802.01.T01:CDS	60.0%
	TAAGCGTGCCTCGGCTACTG+CGG	+	Chr3:75231289-75231308	MsG0380015802.01.T01:CDS	60.0%
	TGCCTCGGCTACTGCGGCCA+CGG	+	Chr3:75231295-75231314	MsG0380015802.01.T01:CDS	70.0%
	GCCTCGGCTACTGCGGCCAC+GGG	+	Chr3:75231296-75231315	MsG0380015802.01.T01:CDS	75.0%
	TCCCGTGGCCGCAGTAGCCG+AGG	-	Chr3:75231300-75231319	None:intergenic	75.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	75228820	75231686	75228820	ID=MsG0380015802.01;Name=MsG0380015802.01
Chr3	mRNA	75228820	75231686	75228820	ID=MsG0380015802.01.T01;Parent=MsG0380015802.01;Name=MsG0380015802.01.T01;_AED=0.41;_eAED=0.41;_QI=51\|1\|1\|1\|1\|1\|3\|346\|164
Chr3	exon	75228820	75229162	75228820	ID=MsG0380015802.01.T01:exon:24614;Parent=MsG0380015802.01.T01
Chr3	exon	75229331	75229385	75229331	ID=MsG0380015802.01.T01:exon:24615;Parent=MsG0380015802.01.T01
Chr3	exon	75231193	75231686	75231193	ID=MsG0380015802.01.T01:exon:24616;Parent=MsG0380015802.01.T01
Chr3	five_prime_UTR	75228820	75228870	75228820	ID=MsG0380015802.01.T01:five_prime_utr;Parent=MsG0380015802.01.T01
Chr3	CDS	75228871	75229162	75228871	ID=MsG0380015802.01.T01:cds;Parent=MsG0380015802.01.T01
Chr3	CDS	75229331	75229385	75229331	ID=MsG0380015802.01.T01:cds;Parent=MsG0380015802.01.T01
Chr3	CDS	75231193	75231340	75231193	ID=MsG0380015802.01.T01:cds;Parent=MsG0380015802.01.T01
Chr3	three_prime_UTR	75231341	75231686	75231341	ID=MsG0380015802.01.T01:three_prime_utr;Parent=MsG0380015802.01.T01

Gene Sequence

>MsG0380015802.01.T01

ATGCTGAGAATCGCAAAGAAACTCGTGCAAACGGCGTCGTTTCAGACGCCAAATCCAGCGATTAGGATTCTTCCACGATTCTACCACGAGAGGGTGGTGGATCACTACGACAATCCCCGAAATGTTGGATCCTTCGATAAGAATGATCCGATGGTGGGAACTGGTCTTGTTGGTGCACCCGCTTGTGGTGATGTCATGAAGCTTCAAATCAAGGTTGATGAGAATGGGAAAATCGTTGATGCTCGCTTTAAGACTTTTGGTTGTGGTTCCGCTATTGCTTCATCGTCCGTTGCTACTGAATGGGTAAAAGGAAAGCAAATGGAGGAGGTTTTAACCATTAAGAACACTGAGATTGCAAAGCATCTTTCACTCCCGCCAGTTAAGCTTCACTGCAGCATGCTTGCTGAGGATGCCATAAAAGCAGCTGTTAAAGATTATGAAGCTAAGCGTGCCTCGGCTACTGCGGCCACGGGAGACAAATCTGCCACTGCATGA

Protein sequence

>MsG0380015802.01.T01

MLRIAKKLVQTASFQTPNPAIRILPRFYHERVVDHYDNPRNVGSFDKNDPMVGTGLVGAPACGDVMKLQIKVDENGKIVDARFKTFGCGSAIASSSVATEWVKGKQMEEVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRASATAATGDKSATA*