Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027139.01.T01 | XP_003601257.1 | 82.927 | 164 | 27 | 1 | 1 | 163 | 1 | 164 | 8.69E-92 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027139.01.T01 | Q8LR34 | 73.913 | 138 | 34 | 2 | 28 | 163 | 34 | 171 | 3.72E-68 | 207 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027139.01.T01 | B7FHC6 | 82.927 | 164 | 27 | 1 | 1 | 163 | 1 | 164 | 4.15e-92 | 274 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0580027138.01 | MsG0580027139.01 | 0.839394 | 1.626730e-57 | 2.243561e-54 |
PPI
| Gene1 | Gene2 | Type |
|---|---|---|
| MsG0580027139.01 | MsG0880045119.01 | PPI |
| MsG0580027139.01 | MsG0180003756.01 | PPI |
| MsG0580027139.01 | MsG0380015597.01 | PPI |
| MsG0580027139.01 | MsG0180003756.01 | PPI |
| MsG0580027139.01 | MsG0380015802.01 | PPI |
| MsG0380015802.01 | MsG0580027139.01 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027139.01.T01 | MTR_3g077720 | 82.927 | 164 | 27 | 1 | 1 | 163 | 1 | 164 | 1.05e-95 | 274 |
| MsG0580027139.01.T01 | MTR_3g077730 | 78.626 | 131 | 25 | 2 | 32 | 159 | 5 | 135 | 1.10e-67 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580027139.01.T01 | AT4G22220 | 64.968 | 157 | 52 | 3 | 1 | 155 | 3 | 158 | 9.81e-66 | 198 |
| MsG0580027139.01.T01 | AT4G04080 | 67.407 | 135 | 43 | 1 | 23 | 156 | 23 | 157 | 5.55e-64 | 194 |
| MsG0580027139.01.T01 | AT3G01020 | 65.000 | 140 | 48 | 1 | 25 | 163 | 24 | 163 | 9.01e-60 | 183 |
Find 64 sgRNAs with CRISPR-Local
Find 85 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAATTAAGGTTGATGATAA+TGG | 0.228001 | 5:+54269782 | MsG0580027139.01.T01:CDS |
| TGTCATGAAGTTTCAAATTA+AGG | 0.237273 | 5:+54269769 | MsG0580027139.01.T01:CDS |
| AGTTGCCAATTCAAGCAATT+AGG | 0.247880 | 5:+54269624 | MsG0580027139.01.T01:CDS |
| ACGAGTTTCTTTGCGATTCT+CGG | 0.306574 | 5:-54269584 | None:intergenic |
| CCGAAGATCTTTCTTATTGA+AGG | 0.314287 | 5:-54269711 | None:intergenic |
| AGAACCCTAATTGCTTGAAT+TGG | 0.316456 | 5:-54269629 | None:intergenic |
| GATTCTTGCTTTAAGACCTT+TGG | 0.331092 | 5:+54269815 | MsG0580027139.01.T01:CDS |
| TGTTTGAATGGTTTGTTTGT+AGG | 0.334004 | 5:+54270580 | MsG0580027139.01.T01:three_prime_UTR |
| TGCATGATTTCTCCCATTGC+TGG | 0.335905 | 5:+54270328 | MsG0580027139.01.T01:exon |
| GGTAAAGGGAAAGCAAATTA+AGG | 0.338517 | 5:+54270026 | MsG0580027139.01.T01:CDS |
| TACAAATACTTGTGTCGGTT+TGG | 0.345859 | 5:+54270491 | MsG0580027139.01.T01:three_prime_UTR |
| ATGCTGCAGTGAAGCTTAAC+TGG | 0.354352 | 5:-54270215 | None:intergenic |
| GTTGCCAATTCAAGCAATTA+GGG | 0.356677 | 5:+54269625 | MsG0580027139.01.T01:CDS |
| CGCAAAGAAACTCGTGCAAA+CGG | 0.368310 | 5:+54269592 | MsG0580027139.01.T01:CDS |
| TTCTCCCATTGCTGGAATGC+TGG | 0.368918 | 5:+54270336 | MsG0580027139.01.T01:three_prime_UTR |
| GATGAAGTTTCTTGTTTGAA+TGG | 0.380469 | 5:+54270568 | MsG0580027139.01.T01:three_prime_UTR |
| GTCTTTATGACAATACAATA+TGG | 0.381045 | 5:-54270524 | None:intergenic |
| CTTCAATAAGAAAGATCTTC+GGG | 0.392132 | 5:+54269712 | MsG0580027139.01.T01:CDS |
| GCAAAGAAACTCGTGCAAAC+GGG | 0.401810 | 5:+54269593 | MsG0580027139.01.T01:CDS |
| ATTGAAGGATCCAACGTTCC+GGG | 0.412834 | 5:-54269696 | None:intergenic |
| TATTGAAGGATCCAACGTTC+CGG | 0.415466 | 5:-54269697 | None:intergenic |
| GCAGCTACTGAATGGGTAAA+GGG | 0.419402 | 5:+54270012 | MsG0580027139.01.T01:intron |
| CTTATAAATACTTGTATCGT+TGG | 0.431923 | 5:+54270546 | MsG0580027139.01.T01:three_prime_UTR |
| TGCCTCGGCTACTGCGGCCA+CGG | 0.446467 | 5:+54270289 | MsG0580027139.01.T01:CDS |
| ACTTGTGTCGGTTTGGAGCT+AGG | 0.449526 | 5:+54270498 | MsG0580027139.01.T01:three_prime_UTR |
| CCTTCAATAAGAAAGATCTT+CGG | 0.452805 | 5:+54269711 | MsG0580027139.01.T01:CDS |
| TGCTTTAAGACCTTTGGATG+TGG | 0.461939 | 5:+54269821 | MsG0580027139.01.T01:CDS |
| TGCAGCTACTGAATGGGTAA+AGG | 0.478916 | 5:+54270011 | MsG0580027139.01.T01:intron |
| CTTCGGGAGGTGGGATCTGT+TGG | 0.484742 | 5:+54269728 | MsG0580027139.01.T01:CDS |
| TAAGAAAGATCTTCGGGAGG+TGG | 0.491830 | 5:+54269718 | MsG0580027139.01.T01:CDS |
| GATGTTATAACAATACAATA+TGG | 0.496765 | 5:-54270467 | None:intergenic |
| TTCAACGATTCTACAACAAG+AGG | 0.500606 | 5:+54269651 | MsG0580027139.01.T01:CDS |
| CATTCCAGCATTCCAGCAAT+GGG | 0.505665 | 5:-54270340 | None:intergenic |
| GCCTCGGCTACTGCGGCCAC+GGG | 0.517239 | 5:+54270290 | MsG0580027139.01.T01:CDS |
| TCATTCCAGCATTCCAGCAA+TGG | 0.517945 | 5:-54270341 | None:intergenic |
| CATCTTACAAATACTTGTGT+CGG | 0.525946 | 5:+54270486 | MsG0580027139.01.T01:three_prime_UTR |
| TGCAGTGAAGCTTAACTGGC+GGG | 0.542392 | 5:-54270211 | None:intergenic |
| TCCCGTGGCCGCAGTAGCCG+AGG | 0.550070 | 5:-54270291 | None:intergenic |
| ATGATCCTTACAGCTAGCAT+AGG | 0.552184 | 5:-54270646 | None:intergenic |
| TACAACAATCCCCGGAACGT+TGG | 0.563672 | 5:+54269686 | MsG0580027139.01.T01:CDS |
| AATCGACTCATTAGCACCAT+TGG | 0.564226 | 5:-54270392 | None:intergenic |
| AAGAAAGATCTTCGGGAGGT+GGG | 0.571174 | 5:+54269719 | MsG0580027139.01.T01:CDS |
| GCTATTGCTTCATCGTCCGT+TGG | 0.572466 | 5:+54269848 | MsG0580027139.01.T01:CDS |
| TTATGAAGCTAAGCGTGCCT+CGG | 0.575006 | 5:+54270274 | MsG0580027139.01.T01:CDS |
| CTTCATGACATCACCACAAG+CGG | 0.586806 | 5:-54269756 | None:intergenic |
| TGATCCTTACAGCTAGCATA+GGG | 0.594333 | 5:-54270645 | None:intergenic |
| TTGAAGGATCCAACGTTCCG+GGG | 0.597622 | 5:-54269695 | None:intergenic |
| TAAGCGTGCCTCGGCTACTG+CGG | 0.598393 | 5:+54270283 | MsG0580027139.01.T01:CDS |
| CAAAGAAACTCGTGCAAACG+GGG | 0.599049 | 5:+54269594 | MsG0580027139.01.T01:CDS |
| TTCATGACATCACCACAAGC+GGG | 0.599308 | 5:-54269755 | None:intergenic |
| TCATTAGTATGATTCTCCAA+TGG | 0.600860 | 5:+54270376 | MsG0580027139.01.T01:three_prime_UTR |
| TGGATCACTACAACAATCCC+CGG | 0.601326 | 5:+54269678 | MsG0580027139.01.T01:CDS |
| TCACTGCAGCATGCTTGCTG+AGG | 0.608636 | 5:+54270226 | MsG0580027139.01.T01:CDS |
| TCTGTTGGTGCACCCGCTTG+TGG | 0.618008 | 5:+54269743 | MsG0580027139.01.T01:CDS |
| ATTCTACAACAAGAGGGTGG+TGG | 0.622053 | 5:+54269658 | MsG0580027139.01.T01:CDS |
| AGTGGCAGATTTGTCTCCCG+TGG | 0.628353 | 5:-54270306 | None:intergenic |
| CTGCAGTGAAGCTTAACTGG+CGG | 0.631259 | 5:-54270212 | None:intergenic |
| AATAGCGGAACCACATCCAA+AGG | 0.639771 | 5:-54269831 | None:intergenic |
| TCAACGATTCTACAACAAGA+GGG | 0.652759 | 5:+54269652 | MsG0580027139.01.T01:CDS |
| CAATGGGAGAAATCATGCAG+TGG | 0.672265 | 5:-54270324 | None:intergenic |
| AACGGACGATGAAGCAATAG+CGG | 0.675366 | 5:-54269846 | None:intergenic |
| TGAGGATGCTATAAAAGCAG+CGG | 0.695297 | 5:+54270244 | MsG0580027139.01.T01:CDS |
| CAATAAGAAAGATCTTCGGG+AGG | 0.711849 | 5:+54269715 | MsG0580027139.01.T01:CDS |
| ACGATTCTACAACAAGAGGG+TGG | 0.727989 | 5:+54269655 | MsG0580027139.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTAAGGATTTTTTTTTT+AGG | + | Chr5:54269905-54269924 | MsG0580027139.01.T01:intron | 10.0% |
| !!! | AATTAAGGATTTTTTTTTTA+GGG | + | Chr5:54269906-54269925 | MsG0580027139.01.T01:intron | 10.0% |
| !! | TAACAAAGTAAAAAATTCTT+AGG | - | Chr5:54270086-54270105 | None:intergenic | 15.0% |
| !!! | TATTCAGAATTTTCTTAATT+GGG | + | Chr5:54270435-54270454 | MsG0580027139.01.T01:three_prime_UTR | 15.0% |
| !!! | TTATTCAGAATTTTCTTAAT+TGG | + | Chr5:54270434-54270453 | MsG0580027139.01.T01:three_prime_UTR | 15.0% |
| !! | GATGTTATAACAATACAATA+TGG | - | Chr5:54270470-54270489 | None:intergenic | 20.0% |
| !!! | ATTCAGAATTTTCTTAATTG+GGG | + | Chr5:54270436-54270455 | MsG0580027139.01.T01:three_prime_UTR | 20.0% |
| ! | CTTATAAATACTTGTATCGT+TGG | + | Chr5:54270546-54270565 | MsG0580027139.01.T01:three_prime_UTR | 25.0% |
| ! | GAATTTGATTATTACGACTA+TGG | + | Chr5:54269960-54269979 | MsG0580027139.01.T01:intron | 25.0% |
| ! | GTCTTTATGACAATACAATA+TGG | - | Chr5:54270527-54270546 | None:intergenic | 25.0% |
| ! | TGTCATGAAGTTTCAAATTA+AGG | + | Chr5:54269769-54269788 | MsG0580027139.01.T01:CDS | 25.0% |
| !!! | CAAATTAAGGTTGATGATAA+TGG | + | Chr5:54269782-54269801 | MsG0580027139.01.T01:CDS | 25.0% |
| !!! | CTACTAAACAGTTTTATCTT+TGG | + | Chr5:54270112-54270131 | MsG0580027139.01.T01:intron | 25.0% |
| !!! | TAGGTTGTTTTTTCATGTAT+TGG | + | Chr5:54269871-54269890 | MsG0580027139.01.T01:intron | 25.0% |
| !!! | TGGTTTGTTATAGGAAATTA+AGG | + | Chr5:54269891-54269910 | MsG0580027139.01.T01:intron | 25.0% |
| !!! | TTCATGTATTGGTTTGTTAT+AGG | + | Chr5:54269882-54269901 | MsG0580027139.01.T01:intron | 25.0% |
| ATGAAAAAACAACCTACCAA+CGG | - | Chr5:54269867-54269886 | None:intergenic | 30.0% | |
| ATTAAGAACACGTAAGTAAC+TGG | + | Chr5:54270060-54270079 | MsG0580027139.01.T01:intron | 30.0% | |
| CATCTTACAAATACTTGTGT+CGG | + | Chr5:54270486-54270505 | MsG0580027139.01.T01:three_prime_UTR | 30.0% | |
| CCTTCAATAAGAAAGATCTT+CGG | + | Chr5:54269711-54269730 | MsG0580027139.01.T01:CDS | 30.0% | |
| CTTCAATAAGAAAGATCTTC+GGG | + | Chr5:54269712-54269731 | MsG0580027139.01.T01:CDS | 30.0% | |
| TCATTAGTATGATTCTCCAA+TGG | + | Chr5:54270376-54270395 | MsG0580027139.01.T01:three_prime_UTR | 30.0% | |
| ! | GATGAAGTTTCTTGTTTGAA+TGG | + | Chr5:54270568-54270587 | MsG0580027139.01.T01:three_prime_UTR | 30.0% |
| !! | TGTTTGAATGGTTTGTTTGT+AGG | + | Chr5:54270580-54270599 | MsG0580027139.01.T01:three_prime_UTR | 30.0% |
| ACTTCCAAAACTACCAATCA+TGG | - | Chr5:54270146-54270165 | None:intergenic | 35.0% | |
| AGAACCCTAATTGCTTGAAT+TGG | - | Chr5:54269632-54269651 | None:intergenic | 35.0% | |
| AGTTGCCAATTCAAGCAATT+AGG | + | Chr5:54269624-54269643 | MsG0580027139.01.T01:CDS | 35.0% | |
| CCGAAGATCTTTCTTATTGA+AGG | - | Chr5:54269714-54269733 | None:intergenic | 35.0% | |
| GGTAAAGGGAAAGCAAATTA+AGG | + | Chr5:54270026-54270045 | MsG0580027139.01.T01:CDS | 35.0% | |
| GTTGCCAATTCAAGCAATTA+GGG | + | Chr5:54269625-54269644 | MsG0580027139.01.T01:CDS | 35.0% | |
| TCAACGATTCTACAACAAGA+GGG | + | Chr5:54269652-54269671 | MsG0580027139.01.T01:CDS | 35.0% | |
| TTCAACGATTCTACAACAAG+AGG | + | Chr5:54269651-54269670 | MsG0580027139.01.T01:CDS | 35.0% | |
| ! | GAATTTTCTTAATTGGGGCT+AGG | + | Chr5:54270441-54270460 | MsG0580027139.01.T01:three_prime_UTR | 35.0% |
| !! | GATTCTTGCTTTAAGACCTT+TGG | + | Chr5:54269815-54269834 | MsG0580027139.01.T01:CDS | 35.0% |
| !! | TACAAATACTTGTGTCGGTT+TGG | + | Chr5:54270491-54270510 | MsG0580027139.01.T01:three_prime_UTR | 35.0% |
| !! | TTTGGTAATGCTTCCATGAT+TGG | + | Chr5:54270130-54270149 | MsG0580027139.01.T01:intron | 35.0% |
| ACGAGTTTCTTTGCGATTCT+CGG | - | Chr5:54269587-54269606 | None:intergenic | 40.0% | |
| ATGATCCTTACAGCTAGCAT+AGG | - | Chr5:54270649-54270668 | None:intergenic | 40.0% | |
| CAATAAGAAAGATCTTCGGG+AGG | + | Chr5:54269715-54269734 | MsG0580027139.01.T01:CDS | 40.0% | |
| TATTGAAGGATCCAACGTTC+CGG | - | Chr5:54269700-54269719 | None:intergenic | 40.0% | |
| TGAGGATGCTATAAAAGCAG+CGG | + | Chr5:54270244-54270263 | MsG0580027139.01.T01:CDS | 40.0% | |
| TGATCCTTACAGCTAGCATA+GGG | - | Chr5:54270648-54270667 | None:intergenic | 40.0% | |
| ! | AATCGACTCATTAGCACCAT+TGG | - | Chr5:54270395-54270414 | None:intergenic | 40.0% |
| ! | ATCGTTTTGCAGCTACTGAA+TGG | + | Chr5:54270004-54270023 | MsG0580027139.01.T01:intron | 40.0% |
| ! | TCGTTTTGCAGCTACTGAAT+GGG | + | Chr5:54270005-54270024 | MsG0580027139.01.T01:intron | 40.0% |
| ! | TTTTCCCTATGCTAGCTGTA+AGG | + | Chr5:54270641-54270660 | MsG0580027139.01.T01:three_prime_UTR | 40.0% |
| !! | GCTTCCATGATTGGTAGTTT+TGG | + | Chr5:54270139-54270158 | MsG0580027139.01.T01:intron | 40.0% |
| !! | TGCTTTAAGACCTTTGGATG+TGG | + | Chr5:54269821-54269840 | MsG0580027139.01.T01:CDS | 40.0% |
| AACGGACGATGAAGCAATAG+CGG | - | Chr5:54269849-54269868 | None:intergenic | 45.0% | |
| AAGAAAGATCTTCGGGAGGT+GGG | + | Chr5:54269719-54269738 | MsG0580027139.01.T01:CDS | 45.0% | |
| ACGATTCTACAACAAGAGGG+TGG | + | Chr5:54269655-54269674 | MsG0580027139.01.T01:CDS | 45.0% | |
| ATGCTGCAGTGAAGCTTAAC+TGG | - | Chr5:54270218-54270237 | None:intergenic | 45.0% | |
| ATTCTACAACAAGAGGGTGG+TGG | + | Chr5:54269658-54269677 | MsG0580027139.01.T01:CDS | 45.0% | |
| ATTGAAGGATCCAACGTTCC+GGG | - | Chr5:54269699-54269718 | None:intergenic | 45.0% | |
| CAAAGAAACTCGTGCAAACG+GGG | + | Chr5:54269594-54269613 | MsG0580027139.01.T01:CDS | 45.0% | |
| CAATGGGAGAAATCATGCAG+TGG | - | Chr5:54270327-54270346 | None:intergenic | 45.0% | |
| CATTCCAGCATTCCAGCAAT+GGG | - | Chr5:54270343-54270362 | None:intergenic | 45.0% | |
| CGCAAAGAAACTCGTGCAAA+CGG | + | Chr5:54269592-54269611 | MsG0580027139.01.T01:CDS | 45.0% | |
| CTTCATGACATCACCACAAG+CGG | - | Chr5:54269759-54269778 | None:intergenic | 45.0% | |
| GCAAAGAAACTCGTGCAAAC+GGG | + | Chr5:54269593-54269612 | MsG0580027139.01.T01:CDS | 45.0% | |
| GCAGCTACTGAATGGGTAAA+GGG | + | Chr5:54270012-54270031 | MsG0580027139.01.T01:intron | 45.0% | |
| TAAGAAAGATCTTCGGGAGG+TGG | + | Chr5:54269718-54269737 | MsG0580027139.01.T01:CDS | 45.0% | |
| TCATTCCAGCATTCCAGCAA+TGG | - | Chr5:54270344-54270363 | None:intergenic | 45.0% | |
| TGCAGCTACTGAATGGGTAA+AGG | + | Chr5:54270011-54270030 | MsG0580027139.01.T01:intron | 45.0% | |
| TGCATGATTTCTCCCATTGC+TGG | + | Chr5:54270328-54270347 | MsG0580027139.01.T01:exon | 45.0% | |
| TGGATCACTACAACAATCCC+CGG | + | Chr5:54269678-54269697 | MsG0580027139.01.T01:CDS | 45.0% | |
| TTATGAAGCTAAGCGTGCCT+CGG | + | Chr5:54270274-54270293 | MsG0580027139.01.T01:CDS | 45.0% | |
| TTCATGACATCACCACAAGC+GGG | - | Chr5:54269758-54269777 | None:intergenic | 45.0% | |
| ! | AATAGCGGAACCACATCCAA+AGG | - | Chr5:54269834-54269853 | None:intergenic | 45.0% |
| CTGCAGTGAAGCTTAACTGG+CGG | - | Chr5:54270215-54270234 | None:intergenic | 50.0% | |
| GCTATTGCTTCATCGTCCGT+TGG | + | Chr5:54269848-54269867 | MsG0580027139.01.T01:CDS | 50.0% | |
| TACAACAATCCCCGGAACGT+TGG | + | Chr5:54269686-54269705 | MsG0580027139.01.T01:CDS | 50.0% | |
| TGCAGTGAAGCTTAACTGGC+GGG | - | Chr5:54270214-54270233 | None:intergenic | 50.0% | |
| TTCTCCCATTGCTGGAATGC+TGG | + | Chr5:54270336-54270355 | MsG0580027139.01.T01:three_prime_UTR | 50.0% | |
| TTGAAGGATCCAACGTTCCG+GGG | - | Chr5:54269698-54269717 | None:intergenic | 50.0% | |
| TTGCTTCATCGTCCGTTGGT+AGG | + | Chr5:54269852-54269871 | MsG0580027139.01.T01:intron | 50.0% | |
| !! | ACTTGTGTCGGTTTGGAGCT+AGG | + | Chr5:54270498-54270517 | MsG0580027139.01.T01:three_prime_UTR | 50.0% |
| AGTGGCAGATTTGTCTCCCG+TGG | - | Chr5:54270309-54270328 | None:intergenic | 55.0% | |
| ! | TCACTGCAGCATGCTTGCTG+AGG | + | Chr5:54270226-54270245 | MsG0580027139.01.T01:CDS | 55.0% |
| CTTCGGGAGGTGGGATCTGT+TGG | + | Chr5:54269728-54269747 | MsG0580027139.01.T01:CDS | 60.0% | |
| TAAGCGTGCCTCGGCTACTG+CGG | + | Chr5:54270283-54270302 | MsG0580027139.01.T01:CDS | 60.0% | |
| TCTGTTGGTGCACCCGCTTG+TGG | + | Chr5:54269743-54269762 | MsG0580027139.01.T01:CDS | 60.0% | |
| TGCCTCGGCTACTGCGGCCA+CGG | + | Chr5:54270289-54270308 | MsG0580027139.01.T01:CDS | 70.0% | |
| GCCTCGGCTACTGCGGCCAC+GGG | + | Chr5:54270290-54270309 | MsG0580027139.01.T01:CDS | 75.0% | |
| TCCCGTGGCCGCAGTAGCCG+AGG | - | Chr5:54270294-54270313 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 54269581 | 54270692 | 54269581 | ID=MsG0580027139.01;Name=MsG0580027139.01 |
| Chr5 | mRNA | 54269581 | 54270692 | 54269581 | ID=MsG0580027139.01.T01;Parent=MsG0580027139.01;Name=MsG0580027139.01.T01;_AED=0.45;_eAED=0.45;_QI=0|1|1|1|1|1|3|358|163 |
| Chr5 | exon | 54270187 | 54270692 | 54270187 | ID=MsG0580027139.01.T01:exon:40539;Parent=MsG0580027139.01.T01 |
| Chr5 | exon | 54270016 | 54270070 | 54270016 | ID=MsG0580027139.01.T01:exon:40538;Parent=MsG0580027139.01.T01 |
| Chr5 | exon | 54269581 | 54269869 | 54269581 | ID=MsG0580027139.01.T01:exon:40537;Parent=MsG0580027139.01.T01 |
| Chr5 | CDS | 54269581 | 54269869 | 54269581 | ID=MsG0580027139.01.T01:cds;Parent=MsG0580027139.01.T01 |
| Chr5 | CDS | 54270016 | 54270070 | 54270016 | ID=MsG0580027139.01.T01:cds;Parent=MsG0580027139.01.T01 |
| Chr5 | CDS | 54270187 | 54270334 | 54270187 | ID=MsG0580027139.01.T01:cds;Parent=MsG0580027139.01.T01 |
| Chr5 | three_prime_UTR | 54270335 | 54270692 | 54270335 | ID=MsG0580027139.01.T01:three_prime_utr;Parent=MsG0580027139.01.T01 |
| Gene Sequence |
| Protein sequence |
