AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015821.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015821.01.T01 MTR_3g078210 94.337 777 44 0 62 838 3 779 0.0 1480
MsG0380015821.01.T01 MTR_8g063790 59.673 796 320 1 29 823 44 839 0.0 979
MsG0380015821.01.T01 MTR_3g467030 80.897 602 86 2 40 641 1 573 0.0 962
MsG0380015821.01.T01 MTR_1g109620 53.980 804 366 4 32 833 52 853 0.0 902
MsG0380015821.01.T01 MTR_4g080160 54.638 787 354 2 39 824 67 851 0.0 896
MsG0380015821.01.T01 MTR_8g105740 52.837 846 369 10 3 821 5 847 0.0 867
MsG0380015821.01.T01 MTR_1g032730 54.224 793 354 7 36 821 59 849 0.0 865
MsG0380015821.01.T01 MTR_4g129270 51.449 828 383 8 5 824 25 841 0.0 843
MsG0380015821.01.T01 MTR_4g129270 51.223 736 344 7 5 732 25 753 0.0 743
MsG0380015821.01.T01 MTR_2g073260 32.250 769 458 21 23 771 110 835 2.16e-127 406
MsG0380015821.01.T01 MTR_0034s0170 32.471 773 454 24 20 770 70 796 4.07e-118 380
MsG0380015821.01.T01 MTR_3g076810 93.529 170 11 0 1 170 1 170 1.01e-109 333
MsG0380015821.01.T01 MTR_8g087910 33.837 331 191 6 38 360 76 386 3.23e-58 204
MsG0380015821.01.T01 MTR_3g467040 81.250 112 21 0 461 572 110 221 2.39e-53 185
MsG0380015821.01.T01 MTR_3g467040 81.818 110 20 0 286 395 1 110 3.82e-53 184
MsG0380015821.01.T01 MTR_8g087930 28.112 466 276 13 365 803 10 443 6.49e-45 170
MsG0380015821.01.T01 MTR_6g069590 60.274 73 11 1 59 131 15 69 4.30e-18 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015821.01.T01 AT1G23870 58.595 797 329 1 39 834 60 856 0.0 986
MsG0380015821.01.T01 AT1G70290 58.726 785 320 2 35 818 54 835 0.0 960
MsG0380015821.01.T01 AT1G60140 54.459 841 361 3 3 822 5 844 0.0 929
MsG0380015821.01.T01 AT1G60140 54.459 841 361 3 3 822 5 844 0.0 929
MsG0380015821.01.T01 AT1G60140 54.459 841 361 3 3 822 5 844 0.0 929
MsG0380015821.01.T01 AT1G60140 54.459 841 361 3 3 822 5 844 0.0 929
MsG0380015821.01.T01 AT1G60140 54.459 841 361 3 3 822 5 844 0.0 929
MsG0380015821.01.T01 AT1G70290 55.159 785 310 3 35 818 54 797 0.0 884
MsG0380015821.01.T01 AT4G17770 50.894 839 390 5 3 820 5 842 0.0 872
MsG0380015821.01.T01 AT4G17770 50.894 839 390 5 3 820 5 842 0.0 872
MsG0380015821.01.T01 AT1G06410 53.494 787 359 3 39 824 60 840 0.0 868
MsG0380015821.01.T01 AT1G06410 53.494 787 359 3 39 824 60 840 0.0 868
MsG0380015821.01.T01 AT1G06410 53.494 787 359 3 39 824 60 840 0.0 868
MsG0380015821.01.T01 AT2G18700 51.555 836 391 6 3 825 5 839 0.0 864
MsG0380015821.01.T01 AT1G68020 50.585 854 383 9 3 821 5 854 0.0 859
MsG0380015821.01.T01 AT1G68020 50.585 854 383 9 3 821 5 854 0.0 859
MsG0380015821.01.T01 AT1G60140 54.727 751 318 3 3 732 5 754 0.0 836
MsG0380015821.01.T01 AT1G68020 50.368 679 298 9 3 646 5 679 0.0 682
MsG0380015821.01.T01 AT1G16980 32.078 823 489 24 35 832 9 786 5.82e-125 395
MsG0380015821.01.T01 AT1G78580 31.695 773 464 21 38 786 92 824 1.05e-116 377
MsG0380015821.01.T01 AT1G78580 31.695 773 464 21 38 786 92 824 1.05e-116 377
MsG0380015821.01.T01 AT1G78580 31.695 773 464 21 38 786 92 824 1.05e-116 377
MsG0380015821.01.T01 AT1G78580 31.695 773 464 21 38 786 92 824 1.05e-116 377
MsG0380015821.01.T01 AT4G27550 31.509 822 474 25 39 817 5 780 3.98e-115 369
MsG0380015821.01.T01 AT4G27550 31.242 829 476 26 39 817 5 789 2.62e-113 364
MsG0380015821.01.T01 AT1G16980 32.330 631 368 18 35 651 9 594 2.06e-99 323

Find 175 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGATGCTGATACTTATTT+TGG 0.097954 3:+75570712 MsG0380015821.01.T01:CDS
TCCTTGGAGGATTTATAATT+TGG 0.119365 3:-75569475 None:intergenic
AGAAGTCTCCAAACAATTTA+AGG 0.127069 3:+75569331 MsG0380015821.01.T01:CDS
GTTCTCATGATGTGCTTTAC+TGG 0.177771 3:+75569942 MsG0380015821.01.T01:CDS
AATCAAAATTTGACCCCTTT+TGG 0.205876 3:-75569204 None:intergenic
TCTGCCTGCAGTCGAATTCT+TGG 0.228543 3:+75569167 MsG0380015821.01.T01:CDS
ATCCATACATAATCATCTTT+TGG 0.229221 3:-75568945 None:intergenic
ATGCTTAATGCAGACATAAT+TGG 0.239876 3:+75569110 MsG0380015821.01.T01:CDS
AGGTATAGCTATACAAATTT+TGG 0.240833 3:-75569063 None:intergenic
ACATTGTTTCTGCATATAAA+AGG 0.256245 3:+75570098 MsG0380015821.01.T01:CDS
GATATTTGCCAATAAAATTA+TGG 0.260534 3:+75568911 MsG0380015821.01.T01:CDS
CCTCTCTTAGTGGGGCAATC+AGG 0.268954 3:+75569813 MsG0380015821.01.T01:CDS
CTTTGCTGGGGTTTCAGCTT+TGG 0.274747 3:+75570019 MsG0380015821.01.T01:CDS
CCTTTGAACAACTCTTTATA+CGG 0.282628 3:+75569420 MsG0380015821.01.T01:CDS
TATTATTAGTTTCGATGAAT+TGG 0.293808 3:+75569364 MsG0380015821.01.T01:CDS
TGCAGAAACAATGTAGTTTC+TGG 0.297049 3:-75570089 None:intergenic
CTGGACAGCTTCTTGAAATT+CGG 0.303587 3:-75570070 None:intergenic
ATTGTTGTTTCTGAGTTTGT+AGG 0.312141 3:+75569782 MsG0380015821.01.T01:CDS
CAGGCAGGGGTGTTCTAAAA+TGG 0.315850 3:+75569715 MsG0380015821.01.T01:CDS
CCCAACACTACAGGGCAATT+TGG 0.326030 3:+75569445 MsG0380015821.01.T01:CDS
GATTCACGACTATCATCTTA+TGG 0.335155 3:+75568965 MsG0380015821.01.T01:CDS
GACTGCAGGCAGACAGAAAA+TGG 0.335205 3:-75569157 None:intergenic
GCTTCTTGAAATTCGGAGAT+AGG 0.339168 3:-75570063 None:intergenic
CACATTCACAATACAACATT+TGG 0.349076 3:-75569648 None:intergenic
CTGAGCATGGTGGCTATATA+AGG 0.351147 3:+75570323 MsG0380015821.01.T01:CDS
CTGGGGTTTCAGCTTTGGCC+TGG 0.356635 3:+75570024 MsG0380015821.01.T01:CDS
TGTTCTACTGACACATCTTC+TGG 0.369902 3:+75571743 MsG0380015821.01.T01:CDS
GGAGCAGGATGGTATGAATT+TGG 0.370990 3:+75569670 MsG0380015821.01.T01:CDS
TCTGAAAAGGATGACATTAC+TGG 0.372924 3:+75568573 MsG0380015821.01.T01:CDS
AATTGAATTCCTCCAACAAC+TGG 0.378133 3:-75568728 None:intergenic
GGGCAATCAGGGTGAATGAT+TGG 0.378526 3:+75569825 MsG0380015821.01.T01:CDS
TTCCCCTTCTTAACAACAAC+AGG 0.379167 3:-75570790 None:intergenic
AATGGGATCATTCATTAATC+TGG 0.381670 3:+75568422 None:intergenic
TTCTCTAACTTTGCTAGAAT+CGG 0.381752 3:-75569312 None:intergenic
CTTCGATGAATCACTTTGGC+AGG 0.387987 3:+75568869 MsG0380015821.01.T01:CDS
ATAATATCAATTTCCGTCAT+AGG 0.388870 3:+75568463 MsG0380015821.01.T01:CDS
GTGTTTATTGTCAGTGGTCG+AGG 0.393230 3:+75570247 MsG0380015821.01.T01:CDS
AGAGAATGTTTCCCAGTTGT+TGG 0.396541 3:+75568716 MsG0380015821.01.T01:CDS
AATCGAATAAATGAAAGGTT+TGG 0.398298 3:+75569548 MsG0380015821.01.T01:CDS
AAACCTTTCATTTATTCGAT+TGG 0.399182 3:-75569546 None:intergenic
GAAGTCTCCAAACAATTTAA+GGG 0.400168 3:+75569332 MsG0380015821.01.T01:CDS
TTCTCATGATGTGCTTTACT+GGG 0.401547 3:+75569943 MsG0380015821.01.T01:CDS
CTTAACAACAACAGGCTTGT+TGG 0.406652 3:-75570782 None:intergenic
ACCCAAAAGATGATTATGTA+TGG 0.407726 3:+75568943 MsG0380015821.01.T01:CDS
TCAGATTGGAAAACGAACTA+TGG 0.409832 3:+75570577 MsG0380015821.01.T01:CDS
CCAATGCCCAGAACAAAATC+TGG 0.414170 3:-75571521 None:intergenic
GATTATCAGTGTGAGAATCT+TGG 0.414633 3:+75570292 MsG0380015821.01.T01:CDS
ATCTTCCGATGTATTCCTTC+TGG 0.416743 3:-75568519 None:intergenic
GGTTCCTCTTCCTCTCTTAG+TGG 0.416758 3:+75569803 MsG0380015821.01.T01:CDS
CCAACGCTGTTTCTCTTCAT+CGG 0.420509 3:-75569894 None:intergenic
CAACGCTGTTTCTCTTCATC+GGG 0.422270 3:-75569893 None:intergenic
TTCAAAGGCTAATAACTTCA+AGG 0.422625 3:-75569405 None:intergenic
TTCATTAAAATATTGCCTGC+TGG 0.425486 3:+75569248 MsG0380015821.01.T01:CDS
CTCTCTTAGTGGGGCAATCA+GGG 0.426774 3:+75569814 MsG0380015821.01.T01:CDS
GTTCCTCTTCCTCTCTTAGT+GGG 0.426783 3:+75569804 MsG0380015821.01.T01:CDS
TTACTACTTGGATGATAGTA+AGG 0.439361 3:+75571664 MsG0380015821.01.T01:CDS
CATCATGAGAACTAACATAT+TGG 0.440603 3:-75569931 None:intergenic
TCATTAAAATATTGCCTGCT+GGG 0.442997 3:+75569249 MsG0380015821.01.T01:CDS
AATCCTGTCGTCATCATTGA+AGG 0.446594 3:+75569584 MsG0380015821.01.T01:CDS
ACCAAATTGCCCTGTAGTGT+TGG 0.447331 3:-75569446 None:intergenic
CAAGCCTGTTGTTGTTAAGA+AGG 0.447976 3:+75570786 MsG0380015821.01.T01:CDS
TATACGGTGCCCAACACTAC+AGG 0.461791 3:+75569436 MsG0380015821.01.T01:CDS
TCTTCCTCTAAATTCTGAAA+AGG 0.461879 3:+75568560 MsG0380015821.01.T01:CDS
CCAAATTGCCCTGTAGTGTT+GGG 0.462292 3:-75569445 None:intergenic
GCTTGGAATATGAATCCAAA+AGG 0.466078 3:+75569189 MsG0380015821.01.T01:CDS
CTAGGCCTTGCTCAAAATGT+TGG 0.469503 3:-75569967 None:intergenic
CGAGTACATTGCATGCAGGC+AGG 0.470102 3:+75569700 MsG0380015821.01.T01:CDS
TGAACTTATCCGAGGGGAGT+TGG 0.470758 3:-75569759 None:intergenic
GGAAACATGTAATGAAATAG+AGG 0.471188 3:-75568822 None:intergenic
ATCATGGTAAGAAACTTTGC+TGG 0.472981 3:+75570005 MsG0380015821.01.T01:CDS
ATCGGAAAGATGATTTAAAG+TGG 0.475380 3:-75569294 None:intergenic
ACATTCCAGGGGATTACTAA+AGG 0.478417 3:+75571449 MsG0380015821.01.T01:intron
TTTCTGAAGGAATAAAAGTA+GGG 0.480689 3:-75568755 None:intergenic
GGCAATCAGGGTGAATGATT+GGG 0.482956 3:+75569826 MsG0380015821.01.T01:CDS
TTGCAGTAACTCTGATACAT+AGG 0.483664 3:-75568843 None:intergenic
CACAGATACGACCTCAGGAC+CGG 0.487101 3:-75570191 None:intergenic
GATTCCATTGTTGCGTCCCC+CGG 0.487433 3:+75570172 MsG0380015821.01.T01:CDS
AGGATGACATTACTGGTAGA+TGG 0.489746 3:+75568580 MsG0380015821.01.T01:CDS
GATGAATTGGACATGTTCAA+AGG 0.491199 3:+75569377 MsG0380015821.01.T01:CDS
AAGCCTGTTGTTGTTAAGAA+GGG 0.493526 3:+75570787 MsG0380015821.01.T01:CDS
ATGGCTGCAAAGATTATGCT+TGG 0.493735 3:+75570596 MsG0380015821.01.T01:CDS
TAATCAAAATTTATCAATGA+AGG 0.494853 3:-75570274 None:intergenic
TAGGCCTTGCTCAAAATGTT+GGG 0.494967 3:-75569966 None:intergenic
GATTCTGCAAGAACTATTTG+TGG 0.496585 3:+75568799 MsG0380015821.01.T01:CDS
TTTAAGATTTCTGTTCCGAC+AGG 0.497938 3:-75569083 None:intergenic
GGAAGCGATGTTGTTATGTC+AGG 0.498032 3:+75569006 MsG0380015821.01.T01:CDS
GATCCTTACACGAGAAAACT+AGG 0.502305 3:-75569985 None:intergenic
AAGCAAAGCTAGTTACTACT+TGG 0.505056 3:+75571652 MsG0380015821.01.T01:CDS
ATTTCTGAAGGAATAAAAGT+AGG 0.509443 3:-75568756 None:intergenic
CAAAATAAGTATCAGCATCA+TGG 0.511968 3:-75570711 None:intergenic
AAGTAGTAACTAGCTTTGCT+TGG 0.513341 3:-75571650 None:intergenic
CATCGCTTCCGTAGAAATGT+TGG 0.513508 3:-75568993 None:intergenic
GAAGGCGGCTTACTACGCTT+TGG 0.514712 3:+75569625 MsG0380015821.01.T01:CDS
TGCCCCACTAAGAGAGGAAG+AGG 0.516165 3:-75569807 None:intergenic
CATATAAAAGGACAAAATGC+AGG 0.516332 3:+75570110 MsG0380015821.01.T01:CDS
CTTGGAATATGAATCCAAAA+GGG 0.516352 3:+75569190 MsG0380015821.01.T01:CDS
TATTGTTGAGGTCAAGCTAC+AGG 0.517788 3:+75570816 MsG0380015821.01.T01:CDS
CGTAGTAAGCCGCCTTCTCA+CGG 0.522028 3:-75569619 None:intergenic
TGGTTCTTCCAACATTTCTA+CGG 0.522407 3:+75568985 MsG0380015821.01.T01:CDS
CGATGTTGTTATGTCAGGCT+AGG 0.524689 3:+75569011 MsG0380015821.01.T01:CDS
AAGCCGCCTTCTCACGGAAA+GGG 0.525879 3:-75569613 None:intergenic
GAATGTTTCCCAGTTGTTGG+AGG 0.528114 3:+75568719 MsG0380015821.01.T01:CDS
TTTAGCACAGATACGACCTC+AGG 0.530241 3:-75570196 None:intergenic
ACATACCAACCATCACTCCT+TGG 0.531984 3:-75569491 None:intergenic
CTGCAGTCGAATTCTTGGCT+TGG 0.532013 3:+75569172 MsG0380015821.01.T01:CDS
CTTCTTGAAATTCGGAGATA+GGG 0.533817 3:-75570062 None:intergenic
TTTCCAATCGAATAAATGAA+AGG 0.535203 3:+75569543 MsG0380015821.01.T01:CDS
GGGACAAAACTCTGAACTCC+AGG 0.535773 3:-75570042 None:intergenic
GAGTACATTGCATGCAGGCA+GGG 0.537904 3:+75569701 MsG0380015821.01.T01:CDS
TTATGTCCCTTTCCGTGAGA+AGG 0.538093 3:+75569607 MsG0380015821.01.T01:CDS
GGTGGGGCGGAGAATCAGAT+TGG 0.538241 3:+75570563 MsG0380015821.01.T01:intron
ACAGATACGACCTCAGGACC+GGG 0.538614 3:-75570190 None:intergenic
TCATGGTAAGAAACTTTGCT+GGG 0.547998 3:+75570006 MsG0380015821.01.T01:CDS
AACACTGTGTTTATTGTCAG+TGG 0.548669 3:+75570241 MsG0380015821.01.T01:CDS
TTGTATTGTGAATGTGGAGC+AGG 0.555336 3:+75569655 MsG0380015821.01.T01:CDS
AGTACATTGCATGCAGGCAG+GGG 0.563361 3:+75569702 MsG0380015821.01.T01:CDS
ACAGCAAGCCAATAAAATGC+TGG 0.564189 3:+75570738 MsG0380015821.01.T01:CDS
TACCAACCATCACTCCTTGG+AGG 0.564247 3:-75569488 None:intergenic
CGACCCATGTGAATCCCAGC+AGG 0.564653 3:-75569263 None:intergenic
CAAGCCAAGAATTCGACTGC+AGG 0.564770 3:-75569171 None:intergenic
GATCATTGCTCTGCCTATGA+CGG 0.565155 3:-75568476 None:intergenic
GAAGGGGAAGCATATTGTTG+AGG 0.566510 3:+75570804 MsG0380015821.01.T01:CDS
AGAAAGACAGTGCATTGGTA+TGG 0.566846 3:+75570683 MsG0380015821.01.T01:CDS
TGTTTACGTGGGATCTCTGA+AGG 0.573261 3:+75568671 MsG0380015821.01.T01:CDS
ATATTCCTTCCAACTCCCCT+CGG 0.573736 3:+75569750 MsG0380015821.01.T01:CDS
TGTTGCTGAAGCATTAAAGT+TGG 0.574662 3:+75569859 MsG0380015821.01.T01:CDS
TGTTGAGAAAGCAAAGGAGC+AGG 0.575170 3:+75569511 MsG0380015821.01.T01:CDS
CTGCATGCAATGTACTCGTA+GGG 0.575725 3:-75569695 None:intergenic
ATGGCTTCGATGAATCACTT+TGG 0.576754 3:+75568865 MsG0380015821.01.T01:CDS
TGTTTATTGTCAGTGGTCGA+GGG 0.576830 3:+75570248 MsG0380015821.01.T01:CDS
TAACCTTCAATGATGACGAC+AGG 0.577271 3:-75569587 None:intergenic
TCAAGTGCTTTCTCGCCAGA+AGG 0.580029 3:+75568504 MsG0380015821.01.T01:CDS
TTCCTCTTCCTCTCTTAGTG+GGG 0.581654 3:+75569805 MsG0380015821.01.T01:CDS
CCTGCATGCAATGTACTCGT+AGG 0.583606 3:-75569696 None:intergenic
AGCCTGTTGTTGTTAAGAAG+GGG 0.585799 3:+75570788 MsG0380015821.01.T01:CDS
ATAAATCCTCCAAGGAGTGA+TGG 0.586926 3:+75569482 MsG0380015821.01.T01:CDS
TCTGGTAGACTTAGTTTCTG+CGG 0.588720 3:+75568440 MsG0380015821.01.T01:CDS
CCTGATTGCCCCACTAAGAG+AGG 0.588995 3:-75569813 None:intergenic
ATCCTCCAAGGAGTGATGGT+TGG 0.598827 3:+75569486 MsG0380015821.01.T01:CDS
CTTATCCGAGGGGAGTTGGA+AGG 0.600566 3:-75569755 None:intergenic
GATATTGATGTTGTTTACGT+GGG 0.602201 3:+75568660 MsG0380015821.01.T01:CDS
TGTCCCTTTCCGTGAGAAGG+CGG 0.603570 3:+75569610 MsG0380015821.01.T01:CDS
ATTGCCTGCTGGGATTCACA+TGG 0.604199 3:+75569259 MsG0380015821.01.T01:CDS
TGATATTGATGTTGTTTACG+TGG 0.604524 3:+75568659 MsG0380015821.01.T01:CDS
CAACAATTGAACTTATCCGA+GGG 0.605231 3:-75569766 None:intergenic
CTTGGTATAGCAGCTGAGCA+TGG 0.607136 3:+75570310 MsG0380015821.01.T01:CDS
AAGTCTCCAAACAATTTAAG+GGG 0.607296 3:+75569333 MsG0380015821.01.T01:CDS
CCGTATAAAGAGTTGTTCAA+AGG 0.608295 3:-75569420 None:intergenic
CCTACGAGTACATTGCATGC+AGG 0.608634 3:+75569696 MsG0380015821.01.T01:CDS
TCCAAATTATAAATCCTCCA+AGG 0.612255 3:+75569474 MsG0380015821.01.T01:CDS
TAAGCCGCCTTCTCACGGAA+AGG 0.621011 3:-75569614 None:intergenic
AGAGCAGAAAGACAGTGCAT+TGG 0.626227 3:+75570678 MsG0380015821.01.T01:CDS
ATTGAATTCCTCCAACAACT+GGG 0.627197 3:-75568727 None:intergenic
CAGATACGACCTCAGGACCG+GGG 0.635437 3:-75570189 None:intergenic
ATATAAAAGGACAAAATGCA+GGG 0.637718 3:+75570111 MsG0380015821.01.T01:CDS
ATACGGTGCCCAACACTACA+GGG 0.638364 3:+75569437 MsG0380015821.01.T01:CDS
AGGATGGAAACGAACAGTGA+AGG 0.641139 3:-75569040 None:intergenic
TGGGGATGATAAATCTGATG+AGG 0.643065 3:+75571541 MsG0380015821.01.T01:CDS
AGATACGACCTCAGGACCGG+GGG 0.643674 3:-75570188 None:intergenic
CAAATGTTGTATTGTGAATG+TGG 0.644388 3:+75569649 MsG0380015821.01.T01:CDS
ATGTATCAGAGTTACTGCAA+TGG 0.646236 3:+75568846 MsG0380015821.01.T01:CDS
AGATTATGCTTGGAAAAGTG+AGG 0.648293 3:+75570606 MsG0380015821.01.T01:CDS
ACAACAATTGAACTTATCCG+AGG 0.652558 3:-75569767 None:intergenic
CCGATGAAGAGAAACAGCGT+TGG 0.652657 3:+75569894 MsG0380015821.01.T01:CDS
ATTTGTATAGCTATACCTGT+CGG 0.655508 3:+75569068 MsG0380015821.01.T01:CDS
AATTTCTGGTGATGAAGATG+AGG 0.657575 3:-75571603 None:intergenic
TTGCCTGCTGGGATTCACAT+GGG 0.660325 3:+75569260 MsG0380015821.01.T01:CDS
TTGGAATATGAATCCAAAAG+GGG 0.662920 3:+75569191 MsG0380015821.01.T01:CDS
CTGTCGATACTAACAATGAG+CGG 0.672543 3:+75571491 MsG0380015821.01.T01:CDS
ATTGTGAATGTGGAGCAGGA+TGG 0.675719 3:+75569659 MsG0380015821.01.T01:CDS
CATGGTAAGAAACTTTGCTG+GGG 0.690437 3:+75570007 MsG0380015821.01.T01:CDS
TTGGTATGTTGAGAAAGCAA+AGG 0.693322 3:+75569505 MsG0380015821.01.T01:CDS
TCTCGCCAGAAGGAATACAT+CGG 0.696672 3:+75568514 MsG0380015821.01.T01:CDS
GGTATAGCAGCTGAGCATGG+TGG 0.710857 3:+75570313 MsG0380015821.01.T01:CDS
AACAATTGAACTTATCCGAG+GGG 0.713813 3:-75569765 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCTATGATATATGATATAA+AGG + Chr3:75571123-75571142 MsG0380015821.01.T01:intron 15.0%
!! ATTCAACTATTTATCATAAA+CGG + Chr3:75570374-75570393 MsG0380015821.01.T01:intron 15.0%
!! TAATCAAAATTTATCAATGA+AGG - Chr3:75570277-75570296 None:intergenic 15.0%
!!! CAAATTTTGATTGAATATTT+TGG + Chr3:75569215-75569234 MsG0380015821.01.T01:CDS 15.0%
!!! TTTTATTTAATGTTTTGTAC+AGG + Chr3:75570542-75570561 MsG0380015821.01.T01:intron 15.0%
!! ATCATATATCATAGATTTAG+AGG - Chr3:75571119-75571138 None:intergenic 20.0%
!! CTCAAATCTATAATCTAAAT+AGG + Chr3:75570865-75570884 MsG0380015821.01.T01:intron 20.0%
!! GATATATGATATAAAGGAAA+AGG + Chr3:75571129-75571148 MsG0380015821.01.T01:intron 20.0%
!! GATATTTGCCAATAAAATTA+TGG + Chr3:75568911-75568930 MsG0380015821.01.T01:CDS 20.0%
!!! AAGAACTTCCATAATTTTAT+TGG - Chr3:75568922-75568941 None:intergenic 20.0%
!!! ATGATGAAGATTCAATTTTT+AGG + Chr3:75568613-75568632 MsG0380015821.01.T01:CDS 20.0%
!!! ATTGAGGTTTTATAATGAAA+TGG - Chr3:75571064-75571083 None:intergenic 20.0%
!!! GTTTTATAATGAAATGGATA+TGG - Chr3:75571058-75571077 None:intergenic 20.0%
!!! TATTATTAGTTTCGATGAAT+TGG + Chr3:75569364-75569383 MsG0380015821.01.T01:CDS 20.0%
! AAACCTTTCATTTATTCGAT+TGG - Chr3:75569549-75569568 None:intergenic 25.0%
! AATCGAATAAATGAAAGGTT+TGG + Chr3:75569548-75569567 MsG0380015821.01.T01:CDS 25.0%
! ATAATATCAATTTCCGTCAT+AGG + Chr3:75568463-75568482 MsG0380015821.01.T01:CDS 25.0%
! ATATAAAAGGACAAAATGCA+GGG + Chr3:75570111-75570130 MsG0380015821.01.T01:CDS 25.0%
! ATTGGTTAATTAACATTCCA+GGG + Chr3:75571437-75571456 MsG0380015821.01.T01:intron 25.0%
! GTAGATACTAAAAACTTTAG+CGG - Chr3:75571371-75571390 None:intergenic 25.0%
! TAGATACTAAAAACTTTAGC+GGG - Chr3:75571370-75571389 None:intergenic 25.0%
! TAGATTATAGATTTGAGAGA+TGG - Chr3:75570862-75570881 None:intergenic 25.0%
! TTGTTCTCAAATGCTAATAT+TGG + Chr3:75571419-75571438 MsG0380015821.01.T01:intron 25.0%
! TTGTTTATTCTTCTTCATGA+GGG - Chr3:75570436-75570455 None:intergenic 25.0%
! TTTCCAATCGAATAAATGAA+AGG + Chr3:75569543-75569562 MsG0380015821.01.T01:CDS 25.0%
! TTTGTTTATTCTTCTTCATG+AGG - Chr3:75570437-75570456 None:intergenic 25.0%
!! AGGTATAGCTATACAAATTT+TGG - Chr3:75569066-75569085 None:intergenic 25.0%
!! ATCCATACATAATCATCTTT+TGG - Chr3:75568948-75568967 None:intergenic 25.0%
!! ATTTAATGTTTTGTACAGGT+GGG + Chr3:75570546-75570565 MsG0380015821.01.T01:intron 25.0%
!! ATTTCTGAAGGAATAAAAGT+AGG - Chr3:75568759-75568778 None:intergenic 25.0%
!! TATAGCTATACAAATTTTGG+AGG - Chr3:75569063-75569082 None:intergenic 25.0%
!! TATTGGTTAATTAACATTCC+AGG + Chr3:75571436-75571455 MsG0380015821.01.T01:intron 25.0%
!! TATTTAATGTTTTGTACAGG+TGG + Chr3:75570545-75570564 MsG0380015821.01.T01:intron 25.0%
!! TCCATACATAATCATCTTTT+GGG - Chr3:75568947-75568966 None:intergenic 25.0%
!! TTTCTGAAGGAATAAAAGTA+GGG - Chr3:75568758-75568777 None:intergenic 25.0%
!!! ACATTGTTTCTGCATATAAA+AGG + Chr3:75570098-75570117 MsG0380015821.01.T01:CDS 25.0%
!!! ATCCAGAAAAAGTTTTATGA+CGG + Chr3:75568777-75568796 MsG0380015821.01.T01:CDS 25.0%
!!! GCTATATTTTTAGACTATGA+TGG + Chr3:75570133-75570152 MsG0380015821.01.T01:CDS 25.0%
!!! TTCAATTTTTAGGCAGTTAA+AGG + Chr3:75568623-75568642 MsG0380015821.01.T01:CDS 25.0%
AAAGAAGAAACTCTAGTTGA+GGG - Chr3:75570470-75570489 None:intergenic 30.0%
AAGGATTAGGGACATTAAAA+AGG - Chr3:75571088-75571107 None:intergenic 30.0%
AAGTCTCCAAACAATTTAAG+GGG + Chr3:75569333-75569352 MsG0380015821.01.T01:CDS 30.0%
ACAGTACATGCAAAAATTTC+TGG - Chr3:75571620-75571639 None:intergenic 30.0%
ACCCAAAAGATGATTATGTA+TGG + Chr3:75568943-75568962 MsG0380015821.01.T01:CDS 30.0%
AGAAGTCTCCAAACAATTTA+AGG + Chr3:75569331-75569350 MsG0380015821.01.T01:CDS 30.0%
AGATACTAAAAACTTTAGCG+GGG - Chr3:75571369-75571388 None:intergenic 30.0%
AGATTTAGAGGATACTGTAA+AGG - Chr3:75571107-75571126 None:intergenic 30.0%
AGGATTAGGGACATTAAAAA+GGG - Chr3:75571087-75571106 None:intergenic 30.0%
ATCGGAAAGATGATTTAAAG+TGG - Chr3:75569297-75569316 None:intergenic 30.0%
ATGCTTAATGCAGACATAAT+TGG + Chr3:75569110-75569129 MsG0380015821.01.T01:CDS 30.0%
ATTTGTATAGCTATACCTGT+CGG + Chr3:75569068-75569087 MsG0380015821.01.T01:CDS 30.0%
CAAAATAAGTATCAGCATCA+TGG - Chr3:75570714-75570733 None:intergenic 30.0%
CAAATGTTGTATTGTGAATG+TGG + Chr3:75569649-75569668 MsG0380015821.01.T01:CDS 30.0%
CACATTCACAATACAACATT+TGG - Chr3:75569651-75569670 None:intergenic 30.0%
CATATAAAAGGACAAAATGC+AGG + Chr3:75570110-75570129 MsG0380015821.01.T01:CDS 30.0%
CATCATGAGAACTAACATAT+TGG - Chr3:75569934-75569953 None:intergenic 30.0%
CCTTTGAACAACTCTTTATA+CGG + Chr3:75569420-75569439 MsG0380015821.01.T01:CDS 30.0%
CTTGGAATATGAATCCAAAA+GGG + Chr3:75569190-75569209 MsG0380015821.01.T01:CDS 30.0%
GAAGTCTCCAAACAATTTAA+GGG + Chr3:75569332-75569351 MsG0380015821.01.T01:CDS 30.0%
GGAAACATGTAATGAAATAG+AGG - Chr3:75568825-75568844 None:intergenic 30.0%
TCATTAAAATATTGCCTGCT+GGG + Chr3:75569249-75569268 MsG0380015821.01.T01:CDS 30.0%
TCCAAATTATAAATCCTCCA+AGG + Chr3:75569474-75569493 MsG0380015821.01.T01:CDS 30.0%
TCCTTGGAGGATTTATAATT+TGG - Chr3:75569478-75569497 None:intergenic 30.0%
TGTTTATTCTTCTTCATGAG+GGG - Chr3:75570435-75570454 None:intergenic 30.0%
TTACTACTTGGATGATAGTA+AGG + Chr3:75571664-75571683 MsG0380015821.01.T01:CDS 30.0%
TTATAAGATGTTATGCGTTG+AGG - Chr3:75571339-75571358 None:intergenic 30.0%
TTCAAAGGCTAATAACTTCA+AGG - Chr3:75569408-75569427 None:intergenic 30.0%
TTCATTAAAATATTGCCTGC+TGG + Chr3:75569248-75569267 MsG0380015821.01.T01:CDS 30.0%
TTCTCTAACTTTGCTAGAAT+CGG - Chr3:75569315-75569334 None:intergenic 30.0%
TTGGAATATGAATCCAAAAG+GGG + Chr3:75569191-75569210 MsG0380015821.01.T01:CDS 30.0%
TTGGTTAATTAACATTCCAG+GGG + Chr3:75571438-75571457 MsG0380015821.01.T01:intron 30.0%
! AATCAAAATTTGACCCCTTT+TGG - Chr3:75569207-75569226 None:intergenic 30.0%
! CATGATGCTGATACTTATTT+TGG + Chr3:75570712-75570731 MsG0380015821.01.T01:CDS 30.0%
! CGTTTTTACATGAGTTTCAT+TGG + Chr3:75571390-75571409 MsG0380015821.01.T01:intron 30.0%
! GAAATTTTTGCATGTACTGT+TGG + Chr3:75571620-75571639 MsG0380015821.01.T01:CDS 30.0%
! GATATTGATGTTGTTTACGT+GGG + Chr3:75568660-75568679 MsG0380015821.01.T01:CDS 30.0%
! TCATCCTTTTCAGAATTTAG+AGG - Chr3:75568567-75568586 None:intergenic 30.0%
! TCTTCCTCTAAATTCTGAAA+AGG + Chr3:75568560-75568579 MsG0380015821.01.T01:CDS 30.0%
! TGATATTGATGTTGTTTACG+TGG + Chr3:75568659-75568678 MsG0380015821.01.T01:CDS 30.0%
! TTTAATGTTTTGTACAGGTG+GGG + Chr3:75570547-75570566 MsG0380015821.01.T01:intron 30.0%
! TTTTTGCCCCTTAAATTGTT+TGG - Chr3:75569342-75569361 None:intergenic 30.0%
!! AACTTTTTCTGGATTTCTGA+AGG - Chr3:75568771-75568790 None:intergenic 30.0%
!! ATCCGTCATAAAACTTTTTC+TGG - Chr3:75568782-75568801 None:intergenic 30.0%
!! ATTGTTGTTTCTGAGTTTGT+AGG + Chr3:75569782-75569801 MsG0380015821.01.T01:CDS 30.0%
!! ATTTTTAGGCAGTTAAAGGA+TGG + Chr3:75568627-75568646 MsG0380015821.01.T01:CDS 30.0%
!!! AATGAAAGGTTTGGTTTTCT+AGG + Chr3:75569557-75569576 MsG0380015821.01.T01:CDS 30.0%
!!! TGCGTTGAGGTTTTAATTTT+TGG - Chr3:75571326-75571345 None:intergenic 30.0%
AACAATTGAACTTATCCGAG+GGG - Chr3:75569768-75569787 None:intergenic 35.0%
AACACTGTGTTTATTGTCAG+TGG + Chr3:75570241-75570260 MsG0380015821.01.T01:CDS 35.0%
AAGCAAAGCTAGTTACTACT+TGG + Chr3:75571652-75571671 MsG0380015821.01.T01:CDS 35.0%
AATTGAATTCCTCCAACAAC+TGG - Chr3:75568731-75568750 None:intergenic 35.0%
ACAACAATTGAACTTATCCG+AGG - Chr3:75569770-75569789 None:intergenic 35.0%
AGAGGATACTGTAAAGGATT+AGG - Chr3:75571101-75571120 None:intergenic 35.0%
AGATTATGCTTGGAAAAGTG+AGG + Chr3:75570606-75570625 MsG0380015821.01.T01:CDS 35.0%
ATCATGGTAAGAAACTTTGC+TGG + Chr3:75570005-75570024 MsG0380015821.01.T01:CDS 35.0%
ATGTATCAGAGTTACTGCAA+TGG + Chr3:75568846-75568865 MsG0380015821.01.T01:CDS 35.0%
ATTGAATTCCTCCAACAACT+GGG - Chr3:75568730-75568749 None:intergenic 35.0%
CAAAGAAGAAACTCTAGTTG+AGG - Chr3:75570471-75570490 None:intergenic 35.0%
CAACAATTGAACTTATCCGA+GGG - Chr3:75569769-75569788 None:intergenic 35.0%
CCGTATAAAGAGTTGTTCAA+AGG - Chr3:75569423-75569442 None:intergenic 35.0%
CTTCTTGAAATTCGGAGATA+GGG - Chr3:75570065-75570084 None:intergenic 35.0%
GAGGATACTGTAAAGGATTA+GGG - Chr3:75571100-75571119 None:intergenic 35.0%
GATGAATTGGACATGTTCAA+AGG + Chr3:75569377-75569396 MsG0380015821.01.T01:CDS 35.0%
GATTATCAGTGTGAGAATCT+TGG + Chr3:75570292-75570311 MsG0380015821.01.T01:CDS 35.0%
GATTCACGACTATCATCTTA+TGG + Chr3:75568965-75568984 MsG0380015821.01.T01:CDS 35.0%
GATTCTGCAAGAACTATTTG+TGG + Chr3:75568799-75568818 MsG0380015821.01.T01:CDS 35.0%
GCTTGGAATATGAATCCAAA+AGG + Chr3:75569189-75569208 MsG0380015821.01.T01:CDS 35.0%
TATAGATTTGAGAGATGGAG+AGG - Chr3:75570857-75570876 None:intergenic 35.0%
TCAGATTGGAAAACGAACTA+TGG + Chr3:75570577-75570596 MsG0380015821.01.T01:CDS 35.0%
TCATGGTAAGAAACTTTGCT+GGG + Chr3:75570006-75570025 MsG0380015821.01.T01:CDS 35.0%
TCTGAAAAGGATGACATTAC+TGG + Chr3:75568573-75568592 MsG0380015821.01.T01:CDS 35.0%
TGCAGAAACAATGTAGTTTC+TGG - Chr3:75570092-75570111 None:intergenic 35.0%
TGGTTCTTCCAACATTTCTA+CGG + Chr3:75568985-75569004 MsG0380015821.01.T01:CDS 35.0%
TTCTCATGATGTGCTTTACT+GGG + Chr3:75569943-75569962 MsG0380015821.01.T01:CDS 35.0%
TTGCAGTAACTCTGATACAT+AGG - Chr3:75568846-75568865 None:intergenic 35.0%
TTGGTATGTTGAGAAAGCAA+AGG + Chr3:75569505-75569524 MsG0380015821.01.T01:CDS 35.0%
TTTGTGAGCACTACATAGTA+CGG + Chr3:75571166-75571185 MsG0380015821.01.T01:intron 35.0%
! AAATCGCCAGATTTTGTTCT+GGG + Chr3:75571515-75571534 MsG0380015821.01.T01:CDS 35.0%
! AAGCCTGTTGTTGTTAAGAA+GGG + Chr3:75570787-75570806 MsG0380015821.01.T01:CDS 35.0%
! TAGATCGTCCAGCATTTTAT+TGG - Chr3:75570749-75570768 None:intergenic 35.0%
! TGTTGCTGAAGCATTAAAGT+TGG + Chr3:75569859-75569878 MsG0380015821.01.T01:CDS 35.0%
! TTTAAGATTTCTGTTCCGAC+AGG - Chr3:75569086-75569105 None:intergenic 35.0%
!! AAGTAGTAACTAGCTTTGCT+TGG - Chr3:75571653-75571672 None:intergenic 35.0%
!! AATTTCTGGTGATGAAGATG+AGG - Chr3:75571606-75571625 None:intergenic 35.0%
!! GCTATACAAATTTTGGAGGA+TGG - Chr3:75569059-75569078 None:intergenic 35.0%
!!! AAGGTTAGCGTTTTGATTGT+GGG + Chr3:75570342-75570361 MsG0380015821.01.T01:intron 35.0%
!!! TAAGGTTAGCGTTTTGATTG+TGG + Chr3:75570341-75570360 MsG0380015821.01.T01:intron 35.0%
AATCCTGTCGTCATCATTGA+AGG + Chr3:75569584-75569603 MsG0380015821.01.T01:CDS 40.0%
ACAGCAAGCCAATAAAATGC+TGG + Chr3:75570738-75570757 MsG0380015821.01.T01:CDS 40.0%
ACATTCCAGGGGATTACTAA+AGG + Chr3:75571449-75571468 MsG0380015821.01.T01:intron 40.0%
AGAGAATGTTTCCCAGTTGT+TGG + Chr3:75568716-75568735 MsG0380015821.01.T01:CDS 40.0%
AGGATGACATTACTGGTAGA+TGG + Chr3:75568580-75568599 MsG0380015821.01.T01:CDS 40.0%
ATAAATCCTCCAAGGAGTGA+TGG + Chr3:75569482-75569501 MsG0380015821.01.T01:CDS 40.0%
ATCTTCCGATGTATTCCTTC+TGG - Chr3:75568522-75568541 None:intergenic 40.0%
ATGGCTGCAAAGATTATGCT+TGG + Chr3:75570596-75570615 MsG0380015821.01.T01:CDS 40.0%
ATGGCTTCGATGAATCACTT+TGG + Chr3:75568865-75568884 MsG0380015821.01.T01:CDS 40.0%
ATTTGAGAGATGGAGAGGAT+AGG - Chr3:75570852-75570871 None:intergenic 40.0%
CATGGTAAGAAACTTTGCTG+GGG + Chr3:75570007-75570026 MsG0380015821.01.T01:CDS 40.0%
CTGGACAGCTTCTTGAAATT+CGG - Chr3:75570073-75570092 None:intergenic 40.0%
CTGTCGATACTAACAATGAG+CGG + Chr3:75571491-75571510 MsG0380015821.01.T01:CDS 40.0%
CTTAACAACAACAGGCTTGT+TGG - Chr3:75570785-75570804 None:intergenic 40.0%
GATCCTTACACGAGAAAACT+AGG - Chr3:75569988-75570007 None:intergenic 40.0%
GCTTCTTGAAATTCGGAGAT+AGG - Chr3:75570066-75570085 None:intergenic 40.0%
GGGACATTAAAAAGGGATTG+AGG - Chr3:75571080-75571099 None:intergenic 40.0%
GTTCTCATGATGTGCTTTAC+TGG + Chr3:75569942-75569961 MsG0380015821.01.T01:CDS 40.0%
TAGGCCTTGCTCAAAATGTT+GGG - Chr3:75569969-75569988 None:intergenic 40.0%
TATTGTTGAGGTCAAGCTAC+AGG + Chr3:75570816-75570835 MsG0380015821.01.T01:CDS 40.0%
TCTGGTAGACTTAGTTTCTG+CGG + Chr3:75568440-75568459 MsG0380015821.01.T01:CDS 40.0%
TGGGGATGATAAATCTGATG+AGG + Chr3:75571541-75571560 MsG0380015821.01.T01:CDS 40.0%
TGTTCTACTGACACATCTTC+TGG + Chr3:75571743-75571762 MsG0380015821.01.T01:CDS 40.0%
TGTTTATTGTCAGTGGTCGA+GGG + Chr3:75570248-75570267 MsG0380015821.01.T01:CDS 40.0%
TTCCCCTTCTTAACAACAAC+AGG - Chr3:75570793-75570812 None:intergenic 40.0%
TTGTATTGTGAATGTGGAGC+AGG + Chr3:75569655-75569674 MsG0380015821.01.T01:CDS 40.0%
! AGAAAGACAGTGCATTGGTA+TGG + Chr3:75570683-75570702 MsG0380015821.01.T01:CDS 40.0%
! AGCCTGTTGTTGTTAAGAAG+GGG + Chr3:75570788-75570807 MsG0380015821.01.T01:CDS 40.0%
! CAAATCGCCAGATTTTGTTC+TGG + Chr3:75571514-75571533 MsG0380015821.01.T01:CDS 40.0%
! CAAGCCTGTTGTTGTTAAGA+AGG + Chr3:75570786-75570805 MsG0380015821.01.T01:CDS 40.0%
! GTTTTCTCGTGTAAGGATCA+TGG + Chr3:75569989-75570008 MsG0380015821.01.T01:CDS 40.0%
! TAACCTTCAATGATGACGAC+AGG - Chr3:75569590-75569609 None:intergenic 40.0%
!! AGATTTTGTTCTGGGCATTG+GGG + Chr3:75571523-75571542 MsG0380015821.01.T01:CDS 40.0%
!! CAGATTTTGTTCTGGGCATT+GGG + Chr3:75571522-75571541 MsG0380015821.01.T01:CDS 40.0%
ACATACCAACCATCACTCCT+TGG - Chr3:75569494-75569513 None:intergenic 45.0%
ACCAAATTGCCCTGTAGTGT+TGG - Chr3:75569449-75569468 None:intergenic 45.0%
ACCACATCAGACCACAATTG+CGG - Chr3:75571267-75571286 None:intergenic 45.0%
AGAGCAGAAAGACAGTGCAT+TGG + Chr3:75570678-75570697 MsG0380015821.01.T01:CDS 45.0%
AGGATGGAAACGAACAGTGA+AGG - Chr3:75569043-75569062 None:intergenic 45.0%
ATATTCCTTCCAACTCCCCT+CGG + Chr3:75569750-75569769 MsG0380015821.01.T01:CDS 45.0%
ATTGCAGCACCCTAACATTG+AGG - Chr3:75571216-75571235 None:intergenic 45.0%
ATTGTGAATGTGGAGCAGGA+TGG + Chr3:75569659-75569678 MsG0380015821.01.T01:CDS 45.0%
CATCGCTTCCGTAGAAATGT+TGG - Chr3:75568996-75569015 None:intergenic 45.0%
CCAAATTGCCCTGTAGTGTT+GGG - Chr3:75569448-75569467 None:intergenic 45.0%
CCAATGCCCAGAACAAAATC+TGG - Chr3:75571524-75571543 None:intergenic 45.0%
CGATGTTGTTATGTCAGGCT+AGG + Chr3:75569011-75569030 MsG0380015821.01.T01:CDS 45.0%
CTAGGCCTTGCTCAAAATGT+TGG - Chr3:75569970-75569989 None:intergenic 45.0%
CTGAGCATGGTGGCTATATA+AGG + Chr3:75570323-75570342 MsG0380015821.01.T01:CDS 45.0%
CTGATCCTTTAGTAATCCCC+TGG - Chr3:75571457-75571476 None:intergenic 45.0%
CTGCATGCAATGTACTCGTA+GGG - Chr3:75569698-75569717 None:intergenic 45.0%
CTTCGATGAATCACTTTGGC+AGG + Chr3:75568869-75568888 MsG0380015821.01.T01:CDS 45.0%
GAATGTTTCCCAGTTGTTGG+AGG + Chr3:75568719-75568738 MsG0380015821.01.T01:CDS 45.0%
GATCATTGCTCTGCCTATGA+CGG - Chr3:75568479-75568498 None:intergenic 45.0%
GATGTGTATTGCAGTCGTTG+CGG + Chr3:75570946-75570965 MsG0380015821.01.T01:intron 45.0%
GGAAGCGATGTTGTTATGTC+AGG + Chr3:75569006-75569025 MsG0380015821.01.T01:CDS 45.0%
GGAGCAGGATGGTATGAATT+TGG + Chr3:75569670-75569689 MsG0380015821.01.T01:CDS 45.0%
GGCAATCAGGGTGAATGATT+GGG + Chr3:75569826-75569845 MsG0380015821.01.T01:CDS 45.0%
GTGTTTATTGTCAGTGGTCG+AGG + Chr3:75570247-75570266 MsG0380015821.01.T01:CDS 45.0%
GTTCCTCTTCCTCTCTTAGT+GGG + Chr3:75569804-75569823 MsG0380015821.01.T01:CDS 45.0%
TACCAATCACACCGCAATTG+TGG + Chr3:75571253-75571272 MsG0380015821.01.T01:intron 45.0%
TCGCCACAACGGCAATATTA+CGG + Chr3:75571295-75571314 MsG0380015821.01.T01:intron 45.0%
TCTCGCCAGAAGGAATACAT+CGG + Chr3:75568514-75568533 MsG0380015821.01.T01:CDS 45.0%
TGTTGAGAAAGCAAAGGAGC+AGG + Chr3:75569511-75569530 MsG0380015821.01.T01:CDS 45.0%
TGTTTACGTGGGATCTCTGA+AGG + Chr3:75568671-75568690 MsG0380015821.01.T01:CDS 45.0%
TTATGTCCCTTTCCGTGAGA+AGG + Chr3:75569607-75569626 MsG0380015821.01.T01:CDS 45.0%
TTCCTCTTCCTCTCTTAGTG+GGG + Chr3:75569805-75569824 MsG0380015821.01.T01:CDS 45.0%
TTGCAGCACCCTAACATTGA+GGG - Chr3:75571215-75571234 None:intergenic 45.0%
TTTAGCACAGATACGACCTC+AGG - Chr3:75570199-75570218 None:intergenic 45.0%
! AATGTTTTGTACAGGTGGGG+CGG + Chr3:75570550-75570569 MsG0380015821.01.T01:intron 45.0%
! GAAGGGGAAGCATATTGTTG+AGG + Chr3:75570804-75570823 MsG0380015821.01.T01:CDS 45.0%
!! AATGTTAGGGTGCTGCAATG+CGG + Chr3:75571217-75571236 MsG0380015821.01.T01:intron 45.0%
!! AGGCCTAGTTTTCTCGTGTA+AGG + Chr3:75569982-75570001 MsG0380015821.01.T01:CDS 45.0%
!! CAACGCTGTTTCTCTTCATC+GGG - Chr3:75569896-75569915 None:intergenic 45.0%
!! CCAACGCTGTTTCTCTTCAT+CGG - Chr3:75569897-75569916 None:intergenic 45.0%
!! CCAGATTTTGTTCTGGGCAT+TGG + Chr3:75571521-75571540 MsG0380015821.01.T01:CDS 45.0%
ACCGCAATTGTGGTCTGATG+TGG + Chr3:75571263-75571282 MsG0380015821.01.T01:intron 50.0%
AGTACATTGCATGCAGGCAG+GGG + Chr3:75569702-75569721 MsG0380015821.01.T01:CDS 50.0%
ATACGGTGCCCAACACTACA+GGG + Chr3:75569437-75569456 MsG0380015821.01.T01:CDS 50.0%
ATCCTCCAAGGAGTGATGGT+TGG + Chr3:75569486-75569505 MsG0380015821.01.T01:CDS 50.0%
ATTGCCTGCTGGGATTCACA+TGG + Chr3:75569259-75569278 MsG0380015821.01.T01:CDS 50.0%
CAAGCCAAGAATTCGACTGC+AGG - Chr3:75569174-75569193 None:intergenic 50.0%
CACAACGGCAATATTACGGC+TGG + Chr3:75571299-75571318 MsG0380015821.01.T01:intron 50.0%
CAGCCGTAATATTGCCGTTG+TGG - Chr3:75571301-75571320 None:intergenic 50.0%
CCCAACACTACAGGGCAATT+TGG + Chr3:75569445-75569464 MsG0380015821.01.T01:CDS 50.0%
CCGATGAAGAGAAACAGCGT+TGG + Chr3:75569894-75569913 MsG0380015821.01.T01:CDS 50.0%
CCGTTGCACCCTCAATGTTA+GGG + Chr3:75571204-75571223 MsG0380015821.01.T01:intron 50.0%
CCTACGAGTACATTGCATGC+AGG + Chr3:75569696-75569715 MsG0380015821.01.T01:CDS 50.0%
CCTGCATGCAATGTACTCGT+AGG - Chr3:75569699-75569718 None:intergenic 50.0%
CTCTCTTAGTGGGGCAATCA+GGG + Chr3:75569814-75569833 MsG0380015821.01.T01:CDS 50.0%
CTGCAGTCGAATTCTTGGCT+TGG + Chr3:75569172-75569191 MsG0380015821.01.T01:CDS 50.0%
CTTGGTATAGCAGCTGAGCA+TGG + Chr3:75570310-75570329 MsG0380015821.01.T01:CDS 50.0%
CTTTGCTGGGGTTTCAGCTT+TGG + Chr3:75570019-75570038 MsG0380015821.01.T01:CDS 50.0%
GACCACAATTGCGGTGTGAT+TGG - Chr3:75571258-75571277 None:intergenic 50.0%
GACTGCAGGCAGACAGAAAA+TGG - Chr3:75569160-75569179 None:intergenic 50.0%
GAGAGATGGAGAGGATAGGT+AGG - Chr3:75570848-75570867 None:intergenic 50.0%
GAGCACTACATAGTACGGTG+TGG + Chr3:75571171-75571190 MsG0380015821.01.T01:intron 50.0%
GAGTACATTGCATGCAGGCA+GGG + Chr3:75569701-75569720 MsG0380015821.01.T01:CDS 50.0%
GGGACAAAACTCTGAACTCC+AGG - Chr3:75570045-75570064 None:intergenic 50.0%
GGGCAATCAGGGTGAATGAT+TGG + Chr3:75569825-75569844 MsG0380015821.01.T01:CDS 50.0%
GGTTCCTCTTCCTCTCTTAG+TGG + Chr3:75569803-75569822 MsG0380015821.01.T01:CDS 50.0%
TACCAACCATCACTCCTTGG+AGG - Chr3:75569491-75569510 None:intergenic 50.0%
TATACGGTGCCCAACACTAC+AGG + Chr3:75569436-75569455 MsG0380015821.01.T01:CDS 50.0%
TCAAGTGCTTTCTCGCCAGA+AGG + Chr3:75568504-75568523 MsG0380015821.01.T01:CDS 50.0%
TCTGCCTGCAGTCGAATTCT+TGG + Chr3:75569167-75569186 MsG0380015821.01.T01:CDS 50.0%
TGAAATTGCAGCTCCTGTCG+CGG + Chr3:75570895-75570914 MsG0380015821.01.T01:intron 50.0%
TGAACTTATCCGAGGGGAGT+TGG - Chr3:75569762-75569781 None:intergenic 50.0%
TTGCCTGCTGGGATTCACAT+GGG + Chr3:75569260-75569279 MsG0380015821.01.T01:CDS 50.0%
! CCCTAACATTGAGGGTGCAA+CGG - Chr3:75571207-75571226 None:intergenic 50.0%
! GGTTGCAGGTACTGCAATTG+CGG + Chr3:75570916-75570935 MsG0380015821.01.T01:intron 50.0%
! TGGGCCCAACATTTTGAGCA+AGG + Chr3:75569962-75569981 MsG0380015821.01.T01:CDS 50.0%
!! CAGGCAGGGGTGTTCTAAAA+TGG + Chr3:75569715-75569734 MsG0380015821.01.T01:CDS 50.0%
AAGCCGCCTTCTCACGGAAA+GGG - Chr3:75569616-75569635 None:intergenic 55.0%
ACAGATACGACCTCAGGACC+GGG - Chr3:75570193-75570212 None:intergenic 55.0%
CACAGATACGACCTCAGGAC+CGG - Chr3:75570194-75570213 None:intergenic 55.0%
CCTCTCTTAGTGGGGCAATC+AGG + Chr3:75569813-75569832 MsG0380015821.01.T01:CDS 55.0%
CCTGATTGCCCCACTAAGAG+AGG - Chr3:75569816-75569835 None:intergenic 55.0%
CGAGTACATTGCATGCAGGC+AGG + Chr3:75569700-75569719 MsG0380015821.01.T01:CDS 55.0%
CGTAGTAAGCCGCCTTCTCA+CGG - Chr3:75569622-75569641 None:intergenic 55.0%
CTTATCCGAGGGGAGTTGGA+AGG - Chr3:75569758-75569777 None:intergenic 55.0%
GAAGGCGGCTTACTACGCTT+TGG + Chr3:75569625-75569644 MsG0380015821.01.T01:CDS 55.0%
GATTCCATTGTTGCGTCCCC+CGG + Chr3:75570172-75570191 MsG0380015821.01.T01:CDS 55.0%
GCCGTTGCACCCTCAATGTT+AGG + Chr3:75571203-75571222 MsG0380015821.01.T01:intron 55.0%
GGTATAGCAGCTGAGCATGG+TGG + Chr3:75570313-75570332 MsG0380015821.01.T01:CDS 55.0%
GGTTGCAGACATCGCCACAA+CGG + Chr3:75571284-75571303 MsG0380015821.01.T01:intron 55.0%
TAAGCCGCCTTCTCACGGAA+AGG - Chr3:75569617-75569636 None:intergenic 55.0%
TGCCCCACTAAGAGAGGAAG+AGG - Chr3:75569810-75569829 None:intergenic 55.0%
TGTCCCTTTCCGTGAGAAGG+CGG + Chr3:75569610-75569629 MsG0380015821.01.T01:CDS 55.0%
AGATACGACCTCAGGACCGG+GGG - Chr3:75570191-75570210 None:intergenic 60.0%
CAGATACGACCTCAGGACCG+GGG - Chr3:75570192-75570211 None:intergenic 60.0%
CGACCCATGTGAATCCCAGC+AGG - Chr3:75569266-75569285 None:intergenic 60.0%
GGTGGGGCGGAGAATCAGAT+TGG + Chr3:75570563-75570582 MsG0380015821.01.T01:intron 60.0%
! CTGGGGTTTCAGCTTTGGCC+TGG + Chr3:75570024-75570043 MsG0380015821.01.T01:CDS 60.0%
AGGACCGGGGGACGCAACAA+TGG - Chr3:75570179-75570198 None:intergenic 65.0%
GCAGTACCTGCAACCGCGAC+AGG - Chr3:75570911-75570930 None:intergenic 65.0%
GCAGCTCCTGTCGCGGTTGC+AGG + Chr3:75570902-75570921 MsG0380015821.01.T01:intron 70.0%
TGTTGCGTCCCCCGGTCCTG+AGG + Chr3:75570180-75570199 MsG0380015821.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 75568423 75571778 75568423 ID=MsG0380015821.01;Name=MsG0380015821.01
Chr3 mRNA 75568423 75571778 75568423 ID=MsG0380015821.01.T01;Parent=MsG0380015821.01;Name=MsG0380015821.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|838
Chr3 exon 75568423 75570344 75568423 ID=MsG0380015821.01.T01:exon:1075;Parent=MsG0380015821.01.T01
Chr3 exon 75570564 75570837 75570564 ID=MsG0380015821.01.T01:exon:1076;Parent=MsG0380015821.01.T01
Chr3 exon 75571458 75571778 75571458 ID=MsG0380015821.01.T01:exon:1077;Parent=MsG0380015821.01.T01
Chr3 CDS 75568423 75570344 75568423 ID=MsG0380015821.01.T01:cds;Parent=MsG0380015821.01.T01
Chr3 CDS 75570564 75570837 75570564 ID=MsG0380015821.01.T01:cds;Parent=MsG0380015821.01.T01
Chr3 CDS 75571458 75571778 75571458 ID=MsG0380015821.01.T01:cds;Parent=MsG0380015821.01.T01
Gene Sequence

>MsG0380015821.01.T01

ATGGGATCATTCATTAATCTGGTAGACTTAGTTTCTGCGGATAATATCAATTTCCGTCATAGGCAGAGCAATGATCATGATTCAAGTGCTTTCTCGCCAGAAGGAATACATCGGAAGATGATAATCGTAGCAAATTATCTTCCTCTAAATTCTGAAAAGGATGACATTACTGGTAGATGGTGCTTTAGTTATGATGAAGATTCAATTTTTAGGCAGTTAAAGGATGGTCTCTCTTCTGATATTGATGTTGTTTACGTGGGATCTCTGAAGGTTGATGTCGATGAAAGTGAGCAAGAGAATGTTTCCCAGTTGTTGGAGGAATTCAATTGCTTCCCTACTTTTATTCCTTCAGAAATCCAGAAAAAGTTTTATGACGGATTCTGCAAGAACTATTTGTGGCCTCTATTTCATTACATGTTTCCTATGTATCAGAGTTACTGCAATGGCTTCGATGAATCACTTTGGCAGGCTTATGTTTCTGCTAACAAGATATTTGCCAATAAAATTATGGAAGTTCTTAACCCAAAAGATGATTATGTATGGATTCACGACTATCATCTTATGGTTCTTCCAACATTTCTACGGAAGCGATGTTGTTATGTCAGGCTAGGCTTTTTCCTTCACTGTTCGTTTCCATCCTCCAAAATTTGTATAGCTATACCTGTCGGAACAGAAATCTTAAAATCAATGCTTAATGCAGACATAATTGGTTTTCAAACTTTTGATTATGCTTGCCATTTTCTGTCTGCCTGCAGTCGAATTCTTGGCTTGGAATATGAATCCAAAAGGGGTCAAATTTTGATTGAATATTTTGGACGTACGATATTCATTAAAATATTGCCTGCTGGGATTCACATGGGTCGCATTGAATCCACTTTAAATCATCTTTCCGATTCTAGCAAAGTTAGAGAAGTCTCCAAACAATTTAAGGGGCAAAAACTTATTATTAGTTTCGATGAATTGGACATGTTCAAAGGCGTGACCTTGAAGTTATTAGCCTTTGAACAACTCTTTATACGGTGCCCAACACTACAGGGCAATTTGGTATTAGTCCAAATTATAAATCCTCCAAGGAGTGATGGTTGGTATGTTGAGAAAGCAAAGGAGCAGGCATACACGATTTCCAATCGAATAAATGAAAGGTTTGGTTTTCTAGGTTATAATCCTGTCGTCATCATTGAAGGTTATGTCCCTTTCCGTGAGAAGGCGGCTTACTACGCTTTGGCCAAATGTTGTATTGTGAATGTGGAGCAGGATGGTATGAATTTGGTTCCCTACGAGTACATTGCATGCAGGCAGGGGTGTTCTAAAATGGACACATCATTAGATATTCCTTCCAACTCCCCTCGGATAAGTTCAATTGTTGTTTCTGAGTTTGTAGGTTCCTCTTCCTCTCTTAGTGGGGCAATCAGGGTGAATGATTGGGATATAAATGCTGTTGCTGAAGCATTAAAGTTGGCTATCACAATGCCCGATGAAGAGAAACAGCGTTGGCATGAAAAGAACTACCAATATGTTAGTTCTCATGATGTGCTTTACTGGGCCCAACATTTTGAGCAAGGCCTAGTTTTCTCGTGTAAGGATCATGGTAAGAAACTTTGCTGGGGTTTCAGCTTTGGCCTGGAGTTCAGAGTTTTGTCCCTATCTCCGAATTTCAAGAAGCTGTCCAGAAACTACATTGTTTCTGCATATAAAAGGACAAAATGCAGGGCTATATTTTTAGACTATGATGGTACAATTGTACGTCATGATTCCATTGTTGCGTCCCCCGGTCCTGAGGTCGTATCTGTGCTAAACAAACTCTGCAGTGATGTTAATAACACTGTGTTTATTGTCAGTGGTCGAGGGAGACCTTCATTGATAAATTTTGATTATCAGTGTGAGAATCTTGGTATAGCAGCTGAGCATGGTGGCTATATAAGGTGGGGCGGAGAATCAGATTGGAAAACGAACTATGGCTGCAAAGATTATGCTTGGAAAAGTGAGGCTGATAAAGTGATGCGATCATATACTGATGAAACAGATGAATCATTTATAGAGCAGAAAGACAGTGCATTGGTATGGAATTACCATGATGCTGATACTTATTTTGGATCACAGCAAGCCAATAAAATGCTGGACGATCTAAGAAGTAAGCTTGCCAACAAGCCTGTTGTTGTTAAGAAGGGGAAGCATATTGTTGAGGTCAAGCTACAGGGGATTACTAAAGGATCAGTTGTAGACGAAGTTCTGTCGATACTAACAATGAGCGGCAAATCGCCAGATTTTGTTCTGGGCATTGGGGATGATAAATCTGATGAGGACATGTTTGAGAGCATATTAAACAAATCTTATGCTTCAACCTCATCTTCATCACCAGAAATTTTTGCATGTACTGTTGGACAGAAACCAAGCAAAGCTAGTTACTACTTGGATGATAGTAAGGAAGTGATGATGTTACTTGCAAGTCTTGCTGCTGCTGCAGCAGAGTCTAGAACAAGATGTTCTACTGACACATCTTCTGGAAGTGCGTTGTGA
Protein sequence

>MsG0380015821.01.T01

MGSFINLVDLVSADNINFRHRQSNDHDSSAFSPEGIHRKMIIVANYLPLNSEKDDITGRWCFSYDEDSIFRQLKDGLSSDIDVVYVGSLKVDVDESEQENVSQLLEEFNCFPTFIPSEIQKKFYDGFCKNYLWPLFHYMFPMYQSYCNGFDESLWQAYVSANKIFANKIMEVLNPKDDYVWIHDYHLMVLPTFLRKRCCYVRLGFFLHCSFPSSKICIAIPVGTEILKSMLNADIIGFQTFDYACHFLSACSRILGLEYESKRGQILIEYFGRTIFIKILPAGIHMGRIESTLNHLSDSSKVREVSKQFKGQKLIISFDELDMFKGVTLKLLAFEQLFIRCPTLQGNLVLVQIINPPRSDGWYVEKAKEQAYTISNRINERFGFLGYNPVVIIEGYVPFREKAAYYALAKCCIVNVEQDGMNLVPYEYIACRQGCSKMDTSLDIPSNSPRISSIVVSEFVGSSSSLSGAIRVNDWDINAVAEALKLAITMPDEEKQRWHEKNYQYVSSHDVLYWAQHFEQGLVFSCKDHGKKLCWGFSFGLEFRVLSLSPNFKKLSRNYIVSAYKRTKCRAIFLDYDGTIVRHDSIVASPGPEVVSVLNKLCSDVNNTVFIVSGRGRPSLINFDYQCENLGIAAEHGGYIRWGGESDWKTNYGCKDYAWKSEADKVMRSYTDETDESFIEQKDSALVWNYHDADTYFGSQQANKMLDDLRSKLANKPVVVKKGKHIVEVKLQGITKGSVVDEVLSILTMSGKSPDFVLGIGDDKSDEDMFESILNKSYASTSSSSPEIFACTVGQKPSKASYYLDDSKEVMMLLASLAAAAAESRTRCSTDTSSGSAL*