AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017822.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017822.01.T01 MTR_3g112500 95.000 120 6 0 185 304 506 625 1.90e-76 248
MsG0380017822.01.T01 MTR_3g112500 75.229 109 21 3 78 185 269 372 1.28e-41 153
MsG0380017822.01.T01 MTR_3g112500 65.600 125 2 1 1 84 9 133 5.79e-38 143
MsG0380017822.01.T01 MTR_4g071070 82.500 120 21 0 185 304 517 636 1.45e-66 223
MsG0380017822.01.T01 MTR_4g071070 55.963 109 42 2 71 178 273 376 8.70e-28 114
MsG0380017822.01.T01 MTR_4g071070 48.387 124 24 1 1 84 22 145 1.65e-27 112
MsG0380017822.01.T01 MTR_2g093210 77.778 117 26 0 185 301 515 631 3.17e-60 204
MsG0380017822.01.T01 MTR_2g093210 45.528 123 26 1 1 82 19 141 5.53e-24 102
MsG0380017822.01.T01 MTR_2g093210 39.394 99 56 1 78 176 278 372 2.21e-16 80.1
MsG0380017822.01.T01 MTR_2g093210 75.833 120 29 0 185 304 475 594 9.12e-60 204
MsG0380017822.01.T01 MTR_2g093210 39.394 99 56 1 78 176 238 332 2.06e-16 80.1
MsG0380017822.01.T01 MTR_2g093210 75.833 120 29 0 185 304 515 634 1.31e-59 204
MsG0380017822.01.T01 MTR_2g093210 45.528 123 26 1 1 82 19 141 5.83e-24 102
MsG0380017822.01.T01 MTR_2g093210 39.394 99 56 1 78 176 278 372 1.88e-16 80.1
MsG0380017822.01.T01 MTR_4g061090 73.333 120 32 0 185 304 517 636 3.03e-57 197
MsG0380017822.01.T01 MTR_4g061090 44.094 127 31 1 1 87 19 145 8.51e-23 99.0
MsG0380017822.01.T01 MTR_4g061090 40.385 104 56 3 76 178 278 376 4.69e-18 85.1
MsG0380017822.01.T01 MTR_2g093210 45.528 123 26 1 1 82 19 141 2.98e-24 102
MsG0380017822.01.T01 MTR_2g093210 39.394 99 56 1 78 176 278 372 2.23e-16 79.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017822.01.T01 AT2G21410 70.000 150 37 3 154 301 491 634 6.53e-66 221
MsG0380017822.01.T01 AT2G21410 40.351 171 46 3 1 124 23 184 1.44e-24 104
MsG0380017822.01.T01 AT2G21410 53.922 102 41 2 78 178 281 377 5.84e-24 102
MsG0380017822.01.T01 AT4G39080 81.197 117 22 0 185 301 517 633 9.06e-66 221
MsG0380017822.01.T01 AT4G39080 45.181 166 45 4 1 124 22 183 1.21e-29 119
MsG0380017822.01.T01 AT4G39080 56.863 102 38 2 78 178 280 376 5.70e-25 105
MsG0380017822.01.T01 AT2G28520 70.400 125 37 0 180 304 511 635 3.96e-59 202
MsG0380017822.01.T01 AT2G28520 46.970 132 29 1 1 91 19 150 1.09e-26 110
MsG0380017822.01.T01 AT2G28520 42.857 98 50 3 80 176 281 373 2.94e-17 82.8

Find 55 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATTCTTGAACAGCCTATT+TGG 0.197201 3:-101019895 MsG0380017822.01.T01:CDS
CACTCCTCATAATTGTAAAA+TGG 0.223248 3:-101019864 MsG0380017822.01.T01:CDS
GGCTGTTCAAGAATACAATT+TGG 0.237322 3:+101019902 None:intergenic
CATATTTAGAATGTGATAAA+TGG 0.248964 3:+101021209 None:intergenic
AATGAAGATGTCAATTCTAT+TGG 0.256189 3:-101020099 MsG0380017822.01.T01:CDS
TTCTTACTTGAAAGAACTTT+TGG 0.258014 3:+101019750 None:intergenic
TCTAAGTCCAACAGATGATT+TGG 0.275930 3:-101019794 MsG0380017822.01.T01:CDS
ATACATCTTTGAACTGAAAA+AGG 0.292712 3:+101023055 None:intergenic
AGCAATTTGTTGCAAACAAT+TGG 0.307815 3:-101021434 MsG0380017822.01.T01:CDS
ATACAATTTGGGGAACAAAT+TGG 0.314145 3:+101019914 None:intergenic
CTCCGTGTGCCATGCCATTT+AGG 0.315514 3:+101020149 None:intergenic
AAAATTTAATTCACATTTCA+AGG 0.325983 3:+101021113 None:intergenic
CATTTGGCGTAGATCCTAAA+TGG 0.329997 3:-101020163 MsG0380017822.01.T01:CDS
CTTTAATTCTACAATTCTTT+CGG 0.330426 3:+101021487 None:intergenic
ATTTGAGCAGTGGAATCTTC+TGG 0.337268 3:-101021405 MsG0380017822.01.T01:intron
ATATGATTCCAAGATTCATT+TGG 0.339853 3:+101020069 None:intergenic
GCTGTTCAAGAATACAATTT+GGG 0.359364 3:+101019903 None:intergenic
TATGATTCCAAGATTCATTT+GGG 0.373807 3:+101020070 None:intergenic
TTCAGGGATGCTACTACAAT+AGG 0.384365 3:-101020211 MsG0380017822.01.T01:intron
TCAAGTAGAGGCAATAGTTC+AGG 0.392420 3:-101020982 MsG0380017822.01.T01:intron
ATCTCTTACCTTGGCGATCT+AGG 0.395353 3:-101023078 MsG0380017822.01.T01:CDS
CTAAGTCCAACAGATGATTT+GGG 0.404472 3:-101019793 MsG0380017822.01.T01:CDS
ATGAAGATGTCAATTCTATT+GGG 0.414653 3:-101020098 MsG0380017822.01.T01:CDS
GGAGTGAAAGATAGCCAAAT+AGG 0.420903 3:+101019881 None:intergenic
ATTGATCATTCCAATTGAAT+CGG 0.434902 3:-101023112 MsG0380017822.01.T01:CDS
GGAGTATCCCAAATGAATCT+TGG 0.435333 3:-101020077 MsG0380017822.01.T01:CDS
GATCGATGAGCCGATTCAAT+TGG 0.436497 3:+101023102 None:intergenic
GTGCGCGACACTTATCCATT+TGG 0.445671 3:-101020179 MsG0380017822.01.T01:CDS
TTCATCACAATAGTTGCAAA+AGG 0.453481 3:-101021238 MsG0380017822.01.T01:intron
TTAAAGACAACCATTGATGT+AGG 0.463823 3:-101021470 MsG0380017822.01.T01:CDS
TTGAAAACAACATAAACATA+TGG 0.470037 3:-101020022 MsG0380017822.01.T01:intron
CATTTAGGATCTACGCCAAA+TGG 0.477514 3:+101020164 None:intergenic
CATCGATCCATCTCTTACCT+TGG 0.485763 3:-101023087 MsG0380017822.01.T01:CDS
GAAGCATAGGTCTGTTGGAA+TGG 0.489379 3:+101022863 None:intergenic
GGGTGAAAACCAGCTCTTGT+TGG 0.493274 3:-101019773 MsG0380017822.01.T01:CDS
TGAATTAATCTCAATTAGCT+CGG 0.496624 3:+101022403 None:intergenic
CCTGTGAAGCATAGGTCTGT+TGG 0.509382 3:+101022858 None:intergenic
CCAACAGACCTATGCTTCAC+AGG 0.533446 3:-101022858 MsG0380017822.01.T01:intron
ATAATTGTAAAATGGTGCAC+TGG 0.535769 3:-101019856 MsG0380017822.01.T01:CDS
AAGCATAGGTCTGTTGGAAT+GGG 0.545226 3:+101022864 None:intergenic
ATGATGCAAACCTACATCAA+TGG 0.557963 3:+101021460 None:intergenic
TTGGATATCAATTTGAGCAG+TGG 0.566788 3:-101021415 MsG0380017822.01.T01:CDS
TATAGGTACCTGTGAAGCAT+AGG 0.569643 3:+101022850 None:intergenic
ATCAATTGAACAAGTTGCAT+AGG 0.570855 3:+101023129 None:intergenic
AGTATTGATGCGAGCAACCG+TGG 0.576809 3:-101021015 MsG0380017822.01.T01:CDS
TACTTGAGAGTTACAGTCCA+CGG 0.579726 3:+101020998 None:intergenic
AACAGGACACGCCTTCTGCA+AGG 0.588971 3:+101021157 None:intergenic
ATCCTAAATGGCATGGCACA+CGG 0.589895 3:-101020151 MsG0380017822.01.T01:CDS
TAGATCGCCAAGGTAAGAGA+TGG 0.589934 3:+101023080 None:intergenic
AAAATGGTGCACTGGATCAC+AGG 0.590090 3:-101019848 MsG0380017822.01.T01:CDS
GGCGTAGATCCTAAATGGCA+TGG 0.594393 3:-101020158 MsG0380017822.01.T01:CDS
AAGAAATGTCTCCTTGCAGA+AGG 0.599603 3:-101021168 MsG0380017822.01.T01:CDS
GGGATGCTACTACAATAGGT+TGG 0.610045 3:-101020207 MsG0380017822.01.T01:CDS
GGACTGTAACTCTCAAGTAG+AGG 0.654482 3:-101020994 MsG0380017822.01.T01:CDS
CTGTTCAAGAATACAATTTG+GGG 0.666631 3:+101019904 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATTTATTATATTTTATTC+GGG - Chr3:101021134-101021153 MsG0380017822.01.T01:CDS 10.0%
!! AAAATTTAATTCACATTTCA+AGG + Chr3:101021769-101021788 None:intergenic 15.0%
!!! AAAATAAACTACAAAGTTTT+AGG + Chr3:101020771-101020790 None:intergenic 15.0%
!!! AAATAAACTACAAAGTTTTA+GGG + Chr3:101020770-101020789 None:intergenic 15.0%
!!! ATATTTATTATCCTTTTTTC+AGG - Chr3:101022651-101022670 MsG0380017822.01.T01:intron 15.0%
!!! ATCAATGAAAAAAAGTTTTA+TGG - Chr3:101022325-101022344 MsG0380017822.01.T01:intron 15.0%
!!! ATTCCTTTAGTTTTAAATTA+TGG - Chr3:101022062-101022081 MsG0380017822.01.T01:intron 15.0%
!!! TAACCATAATTTAAAACTAA+AGG + Chr3:101022068-101022087 None:intergenic 15.0%
!!! TATTTATTATCCTTTTTTCA+GGG - Chr3:101022652-101022671 MsG0380017822.01.T01:intron 15.0%
!!! TTAGTTTTAAATTATGGTTA+TGG - Chr3:101022068-101022087 MsG0380017822.01.T01:intron 15.0%
!!! TTTTAACCTATTTGATAAAA+CGG + Chr3:101020237-101020256 None:intergenic 15.0%
!! AAAAAATGGCATGAAAAATT+TGG + Chr3:101022029-101022048 None:intergenic 20.0%
!! AAAAATGTTAGTGCAAAAAT+AGG + Chr3:101021950-101021969 None:intergenic 20.0%
!! ATATAGTTATAAACTATGCA+TGG + Chr3:101021546-101021565 None:intergenic 20.0%
!! CTTTAATTCTACAATTCTTT+CGG + Chr3:101021395-101021414 None:intergenic 20.0%
!! GAGATATATTATTATGATGA+TGG - Chr3:101022474-101022493 MsG0380017822.01.T01:intron 20.0%
!! TAACTTTAATTAGTTGAATG+TGG - Chr3:101022893-101022912 MsG0380017822.01.T01:intron 20.0%
!! TATACATGTTCCATTAATAA+TGG + Chr3:101020747-101020766 None:intergenic 20.0%
!! TTGAAAACAACATAAACATA+TGG - Chr3:101022857-101022876 MsG0380017822.01.T01:intron 20.0%
!!! AAATTTTCATATCTTTCTAC+CGG - Chr3:101020385-101020404 MsG0380017822.01.T01:intron 20.0%
!!! ACATATTAGAAATGGTTTTT+GGG - Chr3:101022449-101022468 MsG0380017822.01.T01:intron 20.0%
!!! CATATTTAGAATGTGATAAA+TGG + Chr3:101021673-101021692 None:intergenic 20.0%
!!! CTAAGTATTTTCTAGTTTAT+TGG - Chr3:101022381-101022400 MsG0380017822.01.T01:CDS 20.0%
!!! TATGTTGTTTTCAAAGTATT+TGG + Chr3:101022851-101022870 None:intergenic 20.0%
!!! TCAAAAGAAGTAAATTGTTT+TGG + Chr3:101020125-101020144 None:intergenic 20.0%
! AAACCTGGAAATTTCATAAT+GGG + Chr3:101021372-101021391 None:intergenic 25.0%
! AACATCAAATAAAACTACAG+TGG + Chr3:101022408-101022427 None:intergenic 25.0%
! AATGAAGATGTCAATTCTAT+TGG - Chr3:101022780-101022799 MsG0380017822.01.T01:intron 25.0%
! ATAAAATTGGGGTTTATAAC+CGG - Chr3:101020873-101020892 MsG0380017822.01.T01:intron 25.0%
! ATAAAGAATACAAAGTGAGA+AGG + Chr3:101019875-101019894 None:intergenic 25.0%
! ATACATCTTTGAACTGAAAA+AGG + Chr3:101019827-101019846 None:intergenic 25.0%
! ATATGATTCCAAGATTCATT+TGG + Chr3:101022813-101022832 None:intergenic 25.0%
! ATCAAATAGGTTAAAAGATG+TGG - Chr3:101020241-101020260 MsG0380017822.01.T01:intron 25.0%
! ATGAAGATGTCAATTCTATT+GGG - Chr3:101022781-101022800 MsG0380017822.01.T01:intron 25.0%
! ATGCATAGTTGCATTTAAAA+AGG - Chr3:101020062-101020081 MsG0380017822.01.T01:CDS 25.0%
! ATTGATCATTCCAATTGAAT+CGG - Chr3:101019767-101019786 MsG0380017822.01.T01:CDS 25.0%
! GAAGAAAAATTGTGTTACAT+GGG + Chr3:101020424-101020443 None:intergenic 25.0%
! GTATAATTAACCATATAGCT+TGG - Chr3:101020562-101020581 MsG0380017822.01.T01:intron 25.0%
! GTTCTATTGATCTAGAAATT+TGG - Chr3:101020344-101020363 MsG0380017822.01.T01:intron 25.0%
! TATGATACTCGTATATAACA+TGG + Chr3:101022634-101022653 None:intergenic 25.0%
! TATGATTCCAAGATTCATTT+GGG + Chr3:101022812-101022831 None:intergenic 25.0%
! TATGCATACATAGATGTTAT+AGG + Chr3:101020049-101020068 None:intergenic 25.0%
! TATTCTACATAGTATGAATG+TGG - Chr3:101021321-101021340 MsG0380017822.01.T01:intron 25.0%
! TCAAATAGGTTAAAAGATGT+GGG - Chr3:101020242-101020261 MsG0380017822.01.T01:intron 25.0%
! TCAGTAAAGCAGATAAAATT+GGG - Chr3:101020861-101020880 MsG0380017822.01.T01:intron 25.0%
! TGAAGAAAAATTGTGTTACA+TGG + Chr3:101020425-101020444 None:intergenic 25.0%
! TGAATTAATCTCAATTAGCT+CGG + Chr3:101020479-101020498 None:intergenic 25.0%
! TGCAGAGATAATGTAAAAAA+TGG + Chr3:101022043-101022062 None:intergenic 25.0%
! TTATTAAGGAGCAAATGAAA+AGG - Chr3:101020286-101020305 MsG0380017822.01.T01:intron 25.0%
! TTCAGTAAAGCAGATAAAAT+TGG - Chr3:101020860-101020879 MsG0380017822.01.T01:intron 25.0%
!! AACAAAATTTGTGATGCTTT+TGG - Chr3:101021179-101021198 MsG0380017822.01.T01:CDS 25.0%
!! ATTTTAAGCGAGTTAAGAAA+TGG + Chr3:101022763-101022782 None:intergenic 25.0%
!! CATATTAGAAATGGTTTTTG+GGG - Chr3:101022450-101022469 MsG0380017822.01.T01:intron 25.0%
!! GACATATTAGAAATGGTTTT+TGG - Chr3:101022448-101022467 MsG0380017822.01.T01:intron 25.0%
!! TATTGACTGTCCATTATTAA+TGG - Chr3:101020734-101020753 MsG0380017822.01.T01:intron 25.0%
!! TGTAACACAATTTTTCTTCA+CGG - Chr3:101020425-101020444 MsG0380017822.01.T01:intron 25.0%
!!! ATATTAGAAATGGTTTTTGG+GGG - Chr3:101022451-101022470 MsG0380017822.01.T01:intron 25.0%
!!! CTTTTGTTTACCATTTAGTT+GGG - Chr3:101020636-101020655 MsG0380017822.01.T01:intron 25.0%
!!! GCTTATAAATTTTGACTTGT+AGG - Chr3:101020824-101020843 MsG0380017822.01.T01:intron 25.0%
!!! TGAAAAAAAGTTTTATGGTC+AGG - Chr3:101022330-101022349 MsG0380017822.01.T01:intron 25.0%
!!! TTTTGTTTACCATTTAGTTG+GGG - Chr3:101020637-101020656 MsG0380017822.01.T01:intron 25.0%
!!! TTTTTCAGTTCAAAGATGTA+TGG - Chr3:101019826-101019845 MsG0380017822.01.T01:CDS 25.0%
AAGAAATTGTAGACGCATAT+GGG - Chr3:101021983-101022002 MsG0380017822.01.T01:intron 30.0%
AATGTTAGTGCAAAAATAGG+TGG + Chr3:101021947-101021966 None:intergenic 30.0%
ACTTGGAGACATATTAGAAA+TGG - Chr3:101022441-101022460 MsG0380017822.01.T01:intron 30.0%
AGATTGTCCAATAGTTCAAA+CGG + Chr3:101022550-101022569 None:intergenic 30.0%
AGCATAGAAGAGTAACTAAT+TGG + Chr3:101021061-101021080 None:intergenic 30.0%
ATAATTGTAAAATGGTGCAC+TGG - Chr3:101023023-101023042 MsG0380017822.01.T01:intron 30.0%
ATACAATTTGGGGAACAAAT+TGG + Chr3:101022968-101022987 None:intergenic 30.0%
ATGTTAGTGCAAAAATAGGT+GGG + Chr3:101021946-101021965 None:intergenic 30.0%
ATTGTTGCATCTTCATGTAT+GGG - Chr3:101022132-101022151 MsG0380017822.01.T01:intron 30.0%
CAAATAGGTTAAAAGATGTG+GGG - Chr3:101020243-101020262 MsG0380017822.01.T01:intron 30.0%
CACTCCTCATAATTGTAAAA+TGG - Chr3:101023015-101023034 MsG0380017822.01.T01:intron 30.0%
CAGTAAAGCAGATAAAATTG+GGG - Chr3:101020862-101020881 MsG0380017822.01.T01:intron 30.0%
CCAACTAAATGGTAAACAAA+AGG + Chr3:101020638-101020657 None:intergenic 30.0%
CGAAATAGAATTCTTTCGAA+AGG + Chr3:101020924-101020943 None:intergenic 30.0%
CTAATTACCTATATTGCTTC+AGG - Chr3:101022940-101022959 MsG0380017822.01.T01:intron 30.0%
CTATTGATCTAGAAATTTGG+AGG - Chr3:101020347-101020366 MsG0380017822.01.T01:intron 30.0%
CTGTTCAAGAATACAATTTG+GGG + Chr3:101022978-101022997 None:intergenic 30.0%
GAAACCTGGAAATTTCATAA+TGG + Chr3:101021373-101021392 None:intergenic 30.0%
GCTGTTCAAGAATACAATTT+GGG + Chr3:101022979-101022998 None:intergenic 30.0%
GGTAGACAAAATATTATCCT+TGG - Chr3:101021258-101021277 MsG0380017822.01.T01:intron 30.0%
TCATGGCATATGCTTATTAT+TGG - Chr3:101022285-101022304 MsG0380017822.01.T01:intron 30.0%
TGTCTTCTCTAACCTATATA+GGG + Chr3:101020594-101020613 None:intergenic 30.0%
TGTTGTTAATTGCAGAAACT+TGG - Chr3:101022424-101022443 MsG0380017822.01.T01:CDS 30.0%
TTAAAGACAACCATTGATGT+AGG - Chr3:101021409-101021428 MsG0380017822.01.T01:CDS 30.0%
TTCATCACAATAGTTGCAAA+AGG - Chr3:101021641-101021660 MsG0380017822.01.T01:intron 30.0%
TTGTATTCTTTATGACGCTT+CGG - Chr3:101019882-101019901 MsG0380017822.01.T01:CDS 30.0%
TTGTCTTCTCTAACCTATAT+AGG + Chr3:101020595-101020614 None:intergenic 30.0%
TTTCCCATTATGAAATTTCC+AGG - Chr3:101021366-101021385 MsG0380017822.01.T01:intron 30.0%
! AAGTTCAACCAACTTTTGAA+GGG - Chr3:101020709-101020728 MsG0380017822.01.T01:intron 30.0%
! AATTCTATTTCGTGCTACTA+GGG - Chr3:101020932-101020951 MsG0380017822.01.T01:intron 30.0%
! ACTGATTTACTAGACTAGAT+TGG - Chr3:101020203-101020222 MsG0380017822.01.T01:CDS 30.0%
! ACTTTTGAATCTGCATAGAT+AGG + Chr3:101021847-101021866 None:intergenic 30.0%
! AGCTTACCGTTTTATCAAAT+AGG - Chr3:101020228-101020247 MsG0380017822.01.T01:intron 30.0%
! CAATTTTTCTTCACGGATAT+AGG - Chr3:101020432-101020451 MsG0380017822.01.T01:intron 30.0%
! CATTTTTATGAACCTGTGTA+AGG + Chr3:101021115-101021134 None:intergenic 30.0%
! TCATGTTCTAGATCCTTTAT+CGG - Chr3:101020989-101021008 MsG0380017822.01.T01:CDS 30.0%
! TGCACCATTTTACAATTATG+AGG + Chr3:101023022-101023041 None:intergenic 30.0%
!! AGCAATTTGTTGCAAACAAT+TGG - Chr3:101021445-101021464 MsG0380017822.01.T01:CDS 30.0%
!! CCTTTTGTTTACCATTTAGT+TGG - Chr3:101020635-101020654 MsG0380017822.01.T01:intron 30.0%
!! TATTAGAAATGGTTTTTGGG+GGG - Chr3:101022452-101022471 MsG0380017822.01.T01:intron 30.0%
!!! CAGTTAATTTTTTGAGCTCT+AGG + Chr3:101022165-101022184 None:intergenic 30.0%
AACAATTTCAGATGATGCAG+AGG - Chr3:101021237-101021256 MsG0380017822.01.T01:intron 35.0%
AACATTACAGCGAAAAGGAA+AGG + Chr3:101022254-101022273 None:intergenic 35.0%
AGCATCATCAACAAATGACA+TGG + Chr3:101020807-101020826 None:intergenic 35.0%
ATGATGCAAACCTACATCAA+TGG + Chr3:101021422-101021441 None:intergenic 35.0%
CAAGAAATTGTAGACGCATA+TGG - Chr3:101021982-101022001 MsG0380017822.01.T01:intron 35.0%
CATTGTTGCATCTTCATGTA+TGG - Chr3:101022131-101022150 MsG0380017822.01.T01:intron 35.0%
CGCGTAAGTTGCATTTATTA+AGG - Chr3:101020272-101020291 MsG0380017822.01.T01:intron 35.0%
CGTATATAACATGGCCAAAT+AGG + Chr3:101022625-101022644 None:intergenic 35.0%
CTAAGTCCAACAGATGATTT+GGG - Chr3:101023086-101023105 MsG0380017822.01.T01:CDS 35.0%
CTTAATCTTCTACCTTACAC+AGG - Chr3:101021100-101021119 MsG0380017822.01.T01:intron 35.0%
GCAAAATATCTCCATCAACA+TGG - Chr3:101020308-101020327 MsG0380017822.01.T01:intron 35.0%
GGCTGTTCAAGAATACAATT+TGG + Chr3:101022980-101022999 None:intergenic 35.0%
GTATTCTTGAACAGCCTATT+TGG - Chr3:101022984-101023003 MsG0380017822.01.T01:intron 35.0%
GTCTTCTCTAACCTATATAG+GGG + Chr3:101020593-101020612 None:intergenic 35.0%
TCAATAGACCCTTCAAAAGT+TGG + Chr3:101020720-101020739 None:intergenic 35.0%
TCACATTTCAAGGAAAAACC+TGG + Chr3:101021759-101021778 None:intergenic 35.0%
TCTAAGTCCAACAGATGATT+TGG - Chr3:101023085-101023104 MsG0380017822.01.T01:CDS 35.0%
TTACTCAAGTCATCTGAGAA+GGG + Chr3:101021218-101021237 None:intergenic 35.0%
TTGGATATCAATTTGAGCAG+TGG - Chr3:101021464-101021483 MsG0380017822.01.T01:CDS 35.0%
TTTACGAGTATCTGCCTATT+TGG - Chr3:101022608-101022627 MsG0380017822.01.T01:intron 35.0%
TTTACTCAAGTCATCTGAGA+AGG + Chr3:101021219-101021238 None:intergenic 35.0%
! ATTCTATTTCGTGCTACTAG+GGG - Chr3:101020933-101020952 MsG0380017822.01.T01:intron 35.0%
! CACTTTTCTCAATCTACACT+GGG - Chr3:101022497-101022516 MsG0380017822.01.T01:intron 35.0%
! CATGTTCTAGATCCTTTATC+GGG - Chr3:101020990-101021009 MsG0380017822.01.T01:CDS 35.0%
! GAAGTTCAACCAACTTTTGA+AGG - Chr3:101020708-101020727 MsG0380017822.01.T01:intron 35.0%
! GAATTCTATTTCGTGCTACT+AGG - Chr3:101020931-101020950 MsG0380017822.01.T01:intron 35.0%
! GGACACAGATTGGTAATTAA+AGG + Chr3:101019854-101019873 None:intergenic 35.0%
! TTCCTTTTCGCTGTAATGTT+TGG - Chr3:101022254-101022273 MsG0380017822.01.T01:intron 35.0%
! TTTTCACCCAAATCATCTGT+TGG + Chr3:101023095-101023114 None:intergenic 35.0%
! TTTTTCCCTAGTAACAAGAC+CGG + Chr3:101020895-101020914 None:intergenic 35.0%
!! TATAACCGGTCTTGTTACTA+GGG - Chr3:101020887-101020906 MsG0380017822.01.T01:intron 35.0%
!! TTATAACCGGTCTTGTTACT+AGG - Chr3:101020886-101020905 MsG0380017822.01.T01:intron 35.0%
!!! GTACAAGCTTGTTTTAGAGA+AGG - Chr3:101020540-101020559 MsG0380017822.01.T01:intron 35.0%
!!! TTTTGACTTGTAGGAGACAA+CGG - Chr3:101020833-101020852 MsG0380017822.01.T01:intron 35.0%
AAAGTGAGAAGGACACAGAT+TGG + Chr3:101019864-101019883 None:intergenic 40.0%
AAATCAAACCACCTGCATGT+AGG + Chr3:101022591-101022610 None:intergenic 40.0%
AAGAAATGTCTCCTTGCAGA+AGG - Chr3:101021711-101021730 MsG0380017822.01.T01:intron 40.0%
AAGCATAGGTCTGTTGGAAT+GGG + Chr3:101020018-101020037 None:intergenic 40.0%
AAGTACCAGGAAACAAATCC+TGG - Chr3:101022206-101022225 MsG0380017822.01.T01:intron 40.0%
ACTATTGGACAATCTGCCTA+TGG - Chr3:101022555-101022574 MsG0380017822.01.T01:intron 40.0%
AGAGAAACTCCCCAACTAAA+TGG + Chr3:101020649-101020668 None:intergenic 40.0%
ATTTGAGCAGTGGAATCTTC+TGG - Chr3:101021474-101021493 MsG0380017822.01.T01:CDS 40.0%
CACCAAACATTACAGCGAAA+AGG + Chr3:101022259-101022278 None:intergenic 40.0%
CATTTGGCGTAGATCCTAAA+TGG - Chr3:101022716-101022735 MsG0380017822.01.T01:intron 40.0%
CTACAATTCTTTCGGAAACC+TGG + Chr3:101021387-101021406 None:intergenic 40.0%
CTAGAAATTTGGAGGTTGTC+AGG - Chr3:101020355-101020374 MsG0380017822.01.T01:intron 40.0%
CTCCATTCCGTTTGAACTAT+TGG - Chr3:101022540-101022559 MsG0380017822.01.T01:intron 40.0%
GGAGTGAAAGATAGCCAAAT+AGG + Chr3:101023001-101023020 None:intergenic 40.0%
GTAGTAGCATCCCTGAAAAA+AGG + Chr3:101022665-101022684 None:intergenic 40.0%
GTCCAATAGTTCAAACGGAA+TGG + Chr3:101022545-101022564 None:intergenic 40.0%
TACTTGAGAGTTACAGTCCA+CGG + Chr3:101021884-101021903 None:intergenic 40.0%
TATAGGTACCTGTGAAGCAT+AGG + Chr3:101020032-101020051 None:intergenic 40.0%
TCAAGTAGAGGCAATAGTTC+AGG - Chr3:101021897-101021916 MsG0380017822.01.T01:intron 40.0%
TGCAGACAAAGCAAAAACCA+AGG + Chr3:101021278-101021297 None:intergenic 40.0%
TTAGTGCAAAAATAGGTGGG+TGG + Chr3:101021943-101021962 None:intergenic 40.0%
TTCAGGGATGCTACTACAAT+AGG - Chr3:101022668-101022687 MsG0380017822.01.T01:intron 40.0%
! AGGATTTGTTTCCTGGTACT+TGG + Chr3:101022207-101022226 None:intergenic 40.0%
! ATTGGTGCCTGAAGCAATAT+AGG + Chr3:101022950-101022969 None:intergenic 40.0%
! CATTTAGGATCTACGCCAAA+TGG + Chr3:101022718-101022737 None:intergenic 40.0%
! GCACTTTTCTCAATCTACAC+TGG - Chr3:101022496-101022515 MsG0380017822.01.T01:intron 40.0%
! GGAGTATCCCAAATGAATCT+TGG - Chr3:101022802-101022821 MsG0380017822.01.T01:intron 40.0%
! TCGCTGTAATGTTTGGTGAT+GGG - Chr3:101022261-101022280 MsG0380017822.01.T01:intron 40.0%
! TTCGCTGTAATGTTTGGTGA+TGG - Chr3:101022260-101022279 MsG0380017822.01.T01:intron 40.0%
!!! GGGAAATGTTTTTCTGAAGC+AGG - Chr3:101020953-101020972 MsG0380017822.01.T01:intron 40.0%
AAAATGGTGCACTGGATCAC+AGG - Chr3:101023031-101023050 MsG0380017822.01.T01:intron 45.0%
AGATCCTTTATCGGGAGAGA+AGG - Chr3:101020998-101021017 MsG0380017822.01.T01:CDS 45.0%
AGGGGAAAGACCAAGCTATA+TGG + Chr3:101020575-101020594 None:intergenic 45.0%
ATCCTAAATGGCATGGCACA+CGG - Chr3:101022728-101022747 MsG0380017822.01.T01:intron 45.0%
ATCTCTTACCTTGGCGATCT+AGG - Chr3:101019801-101019820 MsG0380017822.01.T01:CDS 45.0%
CATCGATCCATCTCTTACCT+TGG - Chr3:101019792-101019811 MsG0380017822.01.T01:CDS 45.0%
CATGGGAATGCTCTCTTTAC+CGG + Chr3:101020407-101020426 None:intergenic 45.0%
GAAGCATAGGTCTGTTGGAA+TGG + Chr3:101020019-101020038 None:intergenic 45.0%
GGACTGTAACTCTCAAGTAG+AGG - Chr3:101021885-101021904 MsG0380017822.01.T01:intron 45.0%
GGGATGCTACTACAATAGGT+TGG - Chr3:101022672-101022691 MsG0380017822.01.T01:intron 45.0%
GTAACCTTCTCTCCCGATAA+AGG + Chr3:101021005-101021024 None:intergenic 45.0%
GTGATGATTGTGTACACACC+AGG + Chr3:101022227-101022246 None:intergenic 45.0%
GTTGAACTTCAAGCTCTCTC+TGG + Chr3:101020698-101020717 None:intergenic 45.0%
TAGATCGCCAAGGTAAGAGA+TGG + Chr3:101019802-101019821 None:intergenic 45.0%
TCAACATGGTCAACGAGAGA+TGG - Chr3:101020322-101020341 MsG0380017822.01.T01:intron 45.0%
TCTCTCGTTGACCATGTTGA+TGG + Chr3:101020322-101020341 None:intergenic 45.0%
TGACAGAATTGCCAAGTACC+AGG - Chr3:101022193-101022212 MsG0380017822.01.T01:intron 45.0%
! AACTTTTGGCCAACAAGAGC+TGG + Chr3:101023118-101023137 None:intergenic 45.0%
! ACACACCAGGATTTGTTTCC+TGG + Chr3:101022214-101022233 None:intergenic 45.0%
! GATCGATGAGCCGATTCAAT+TGG + Chr3:101019780-101019799 None:intergenic 45.0%
! GCTTGGTCTTTCCCCTATAT+AGG - Chr3:101020579-101020598 MsG0380017822.01.T01:intron 45.0%
!! AATGTTTGGTGATGGGGTCA+TGG - Chr3:101022268-101022287 MsG0380017822.01.T01:intron 45.0%
!! ACCTGGCTTGTTGCAAAAAC+AGG + Chr3:101021742-101021761 None:intergenic 45.0%
!! CGCTGTAATGTTTGGTGATG+GGG - Chr3:101022262-101022281 MsG0380017822.01.T01:intron 45.0%
!!! TCCTGTTTTTGCAACAAGCC+AGG - Chr3:101021738-101021757 MsG0380017822.01.T01:intron 45.0%
!!! TGTTTTTCTGAAGCAGGCTG+TGG - Chr3:101020959-101020978 MsG0380017822.01.T01:intron 45.0%
!!! TGTATTTATTATATTTTATT+CGG - Chr3:101021133-101021152 MsG0380017822.01.T01:CDS 5.0%
AACTTCAAGCTCTCTCTGGC+GGG + Chr3:101020694-101020713 None:intergenic 50.0%
CCAACAGACCTATGCTTCAC+AGG - Chr3:101020021-101020040 MsG0380017822.01.T01:intron 50.0%
CCTGTGAAGCATAGGTCTGT+TGG + Chr3:101020024-101020043 None:intergenic 50.0%
GAAAAAGGCCTAGATCGCCA+AGG + Chr3:101019812-101019831 None:intergenic 50.0%
GAACTTCAAGCTCTCTCTGG+CGG + Chr3:101020695-101020714 None:intergenic 50.0%
GGCGTAGATCCTAAATGGCA+TGG - Chr3:101022721-101022740 MsG0380017822.01.T01:intron 50.0%
GGGTGAAAACCAGCTCTTGT+TGG - Chr3:101023106-101023125 MsG0380017822.01.T01:CDS 50.0%
GTGCGCGACACTTATCCATT+TGG - Chr3:101022700-101022719 MsG0380017822.01.T01:intron 50.0%
TGTAGGATCGCGACATCCAT+AGG + Chr3:101022574-101022593 None:intergenic 50.0%
!! AGTATTGATGCGAGCAACCG+TGG - Chr3:101021864-101021883 MsG0380017822.01.T01:intron 50.0%
AACAGGACACGCCTTCTGCA+AGG + Chr3:101021725-101021744 None:intergenic 55.0%
GATGTCGCGATCCTACATGC+AGG - Chr3:101022577-101022596 MsG0380017822.01.T01:intron 55.0%
! CTCCGTGTGCCATGCCATTT+AGG + Chr3:101022733-101022752 None:intergenic 55.0%
GTCGCGATCCTACATGCAGG+TGG - Chr3:101022580-101022599 MsG0380017822.01.T01:intron 60.0%
!! AAGCTCTCTCTGGCGGGTTG+CGG + Chr3:101020688-101020707 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 101019753 101023148 101019753 ID=MsG0380017822.01;Name=MsG0380017822.01
Chr3 mRNA 101019753 101023148 101019753 ID=MsG0380017822.01.T01;Parent=MsG0380017822.01;Name=MsG0380017822.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|0.14|0.5|8|0|308
Chr3 exon 101023059 101023148 101023059 ID=MsG0380017822.01.T01:exon:2882;Parent=MsG0380017822.01.T01
Chr3 exon 101022859 101022903 101022859 ID=MsG0380017822.01.T01:exon:2881;Parent=MsG0380017822.01.T01
Chr3 exon 101022340 101022447 101022340 ID=MsG0380017822.01.T01:exon:2880;Parent=MsG0380017822.01.T01
Chr3 exon 101021406 101021513 101021406 ID=MsG0380017822.01.T01:exon:2879;Parent=MsG0380017822.01.T01
Chr3 exon 101021127 101021247 101021127 ID=MsG0380017822.01.T01:exon:2878;Parent=MsG0380017822.01.T01
Chr3 exon 101020983 101021044 101020983 ID=MsG0380017822.01.T01:exon:2877;Parent=MsG0380017822.01.T01
Chr3 exon 101020023 101020228 101020023 ID=MsG0380017822.01.T01:exon:2876;Parent=MsG0380017822.01.T01
Chr3 exon 101019753 101019939 101019753 ID=MsG0380017822.01.T01:exon:2875;Parent=MsG0380017822.01.T01
Chr3 CDS 101023059 101023148 101023059 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101022859 101022903 101022859 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101022340 101022447 101022340 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101021406 101021513 101021406 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101021127 101021247 101021127 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101020983 101021044 101020983 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101020023 101020228 101020023 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Chr3 CDS 101019753 101019939 101019753 ID=MsG0380017822.01.T01:cds;Parent=MsG0380017822.01.T01
Gene Sequence

>MsG0380017822.01.T01

ATGCAACTTGTTCAATTGATCATTCCAATTGAATCGGCTCATCGATCCATCTCTTACCTTGGCGATCTAGGCCTTTTTCAGTTCAAAGATCTTAATGAAGATAAAAGCCCATTCCAACAGACCTATGCTTCACAGGTTAAACTAGCAGAACTTGAAGCCGAGCTAATTGAGATTAATTCAAACAATGAGAAGTTGCAGCACACTTATAATGAACTTATAGAGTACAAGCTTGTTTTAGAGAAGGTTTCCGAAAGAATTGTAGAATTAAAGACAACCATTGATGTAGGTTTGCATCATCGAAGCAATTTGTTGCAAACAATTGGATATCAATTTGAGCAGTGGAATCTTCTGTTGCAAAAGGAAAAGTCCATTTATCACATTCTAAATATGCTAAACATTAATGTGACAAAGAAATGTCTCCTTGCAGAAGGCGTGTCCTGTTTTTGCAACAAGCCAGGTTTTTCCTTGAAATATTCAAAAGTATTGATGCGAGCAACCGTGGACTGTAACTCTCAAGTAGAGGCAATAGTTCAGGGATGCTACTACAATAGGTTGGTAAAAGTGCGCGACACTTATCCATTTGGCGTAGATCCTAAATGGCATGGCACACGGAGTGAACTTCCATTTCTTAACTCGCTTAAAATGAAGATGTCAATTCTATTGGGAGTATCCCAAATGAATCTTGGAATCATATTGAGTCACTATAATGCCAAATACTTTGAAAACAACATAAACATATGGCACCAATTTGTTCCCCAAATTGTATTCTTGAACAGCCTATTTGGCTATCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACTTGTATCATGTGATGATATACATGTTTCTAAGTCCAACAGATGATTTGGGTGAAAACCAGCTCTTGTTGGCCAAAAGTTCTTTCAAGTAA

Protein sequence

>MsG0380017822.01.T01

MQLVQLIIPIESAHRSISYLGDLGLFQFKDLNEDKSPFQQTYASQVKLAELEAELIEINSNNEKLQHTYNELIEYKLVLEKVSERIVELKTTIDVGLHHRSNLLQTIGYQFEQWNLLLQKEKSIYHILNMLNINVTKKCLLAEGVSCFCNKPGFSLKYSKVLMRATVDCNSQVEAIVQGCYYNRLVKVRDTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSHYNAKYFENNINIWHQFVPQIVFLNSLFGYLSLLIIVKWCTGSQADLYHVMIYMFLSPTDDLGENQLLLAKSSFK*