Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016316.01.T01 | XP_003601994.1 | 86.792 | 477 | 30 | 4 | 1 | 444 | 1 | 477 | 0 | 825 |
| MsG0380016316.01.T02 | XP_003601994.1 | 92.243 | 477 | 31 | 3 | 1 | 471 | 1 | 477 | 0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016316.01.T01 | Q9LR73 | 32.359 | 479 | 256 | 21 | 9 | 442 | 8 | 463 | 3.47E-60 | 206 |
| MsG0380016316.01.T02 | Q9LR73 | 33.264 | 478 | 280 | 18 | 9 | 469 | 8 | 463 | 2.64E-71 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016316.01.T01 | F4ZG55 | 86.792 | 477 | 30 | 4 | 1 | 444 | 1 | 477 | 0.0 | 825 |
| MsG0380016316.01.T02 | F4ZG55 | 92.243 | 477 | 31 | 3 | 1 | 471 | 1 | 477 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013041.01 | MsG0380016316.01 | 0.829332 | 5.460951e-55 | 5.572699e-52 |
| MsG0380016316.01 | MsG0380017394.01 | 0.808065 | 3.718475e-50 | 2.105358e-47 |
| MsG0380016316.01 | MsG0580024798.01 | 0.803350 | 3.635371e-49 | 1.822648e-46 |
| MsG0380016316.01 | MsG0580025093.01 | 0.803460 | 3.449470e-49 | 1.734421e-46 |
| MsG0380016316.01 | MsG0780040139.01 | 0.807326 | 5.337580e-50 | 2.964400e-47 |
| MsG0380016316.01 | MsG0880045503.01 | 0.801604 | 8.325438e-49 | 3.992397e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016316.01.T01 | MTR_3g087640 | 86.792 | 477 | 30 | 4 | 1 | 444 | 1 | 477 | 0.0 | 825 |
| MsG0380016316.01.T01 | MTR_2g089650 | 61.311 | 473 | 147 | 5 | 1 | 443 | 1 | 467 | 0.0 | 581 |
| MsG0380016316.01.T01 | MTR_2g089735 | 63.326 | 469 | 137 | 6 | 7 | 444 | 2 | 466 | 0.0 | 572 |
| MsG0380016316.01.T01 | MTR_2g089755 | 60.768 | 469 | 152 | 5 | 7 | 444 | 13 | 480 | 0.0 | 557 |
| MsG0380016316.01.T01 | MTR_3g435300 | 78.626 | 262 | 55 | 1 | 9 | 270 | 3 | 263 | 2.70e-150 | 428 |
| MsG0380016316.01.T01 | MTR_2g089765 | 33.811 | 488 | 245 | 16 | 10 | 440 | 17 | 483 | 2.28e-72 | 236 |
| MsG0380016316.01.T01 | MTR_7g014330 | 33.755 | 474 | 250 | 12 | 10 | 439 | 3 | 456 | 6.38e-70 | 229 |
| MsG0380016316.01.T01 | MTR_7g014250 | 32.842 | 475 | 253 | 14 | 10 | 439 | 3 | 456 | 8.81e-67 | 221 |
| MsG0380016316.01.T01 | MTR_6g015850 | 35.684 | 468 | 235 | 16 | 11 | 440 | 19 | 458 | 8.54e-66 | 218 |
| MsG0380016316.01.T01 | MTR_2g089670 | 32.285 | 477 | 254 | 16 | 10 | 439 | 23 | 477 | 2.63e-63 | 212 |
| MsG0380016316.01.T01 | MTR_7g015860 | 31.723 | 476 | 264 | 16 | 8 | 440 | 4 | 461 | 4.74e-63 | 211 |
| MsG0380016316.01.T01 | MTR_3g028210 | 32.278 | 474 | 261 | 15 | 10 | 440 | 9 | 465 | 6.55e-63 | 211 |
| MsG0380016316.01.T01 | MTR_7g014230 | 31.667 | 480 | 256 | 13 | 7 | 438 | 2 | 457 | 1.06e-61 | 207 |
| MsG0380016316.01.T01 | MTR_7g014200 | 31.818 | 484 | 269 | 13 | 1 | 439 | 1 | 468 | 2.44e-61 | 207 |
| MsG0380016316.01.T01 | MTR_8g012750 | 31.753 | 485 | 262 | 14 | 10 | 440 | 4 | 473 | 4.00e-61 | 206 |
| MsG0380016316.01.T01 | MTR_4g032380 | 63.514 | 148 | 36 | 2 | 158 | 303 | 100 | 231 | 9.37e-61 | 197 |
| MsG0380016316.01.T01 | MTR_4g032380 | 63.014 | 73 | 24 | 1 | 9 | 81 | 32 | 101 | 3.80e-20 | 89.4 |
| MsG0380016316.01.T01 | MTR_6g015815 | 33.909 | 463 | 227 | 17 | 26 | 440 | 30 | 461 | 1.24e-60 | 204 |
| MsG0380016316.01.T01 | MTR_6g015830 | 33.987 | 459 | 238 | 17 | 23 | 440 | 27 | 461 | 1.75e-57 | 196 |
| MsG0380016316.01.T01 | MTR_7g014610 | 31.493 | 489 | 254 | 15 | 10 | 439 | 9 | 475 | 3.35e-56 | 193 |
| MsG0380016316.01.T01 | MTR_7g014160 | 31.601 | 481 | 261 | 18 | 10 | 439 | 10 | 473 | 8.74e-56 | 192 |
| MsG0380016316.01.T01 | MTR_6g015320 | 28.112 | 466 | 267 | 12 | 17 | 440 | 16 | 455 | 5.39e-50 | 176 |
| MsG0380016316.01.T01 | MTR_6g015315 | 29.519 | 437 | 247 | 12 | 43 | 440 | 39 | 453 | 1.66e-47 | 169 |
| MsG0380016316.01.T01 | MTR_2g089665 | 30.383 | 418 | 191 | 14 | 10 | 413 | 3 | 334 | 8.09e-47 | 165 |
| MsG0380016316.01.T01 | MTR_7g013850 | 27.835 | 485 | 282 | 13 | 10 | 439 | 9 | 480 | 3.29e-41 | 153 |
| MsG0380016316.01.T01 | MTR_2g067320 | 71.277 | 94 | 25 | 1 | 218 | 309 | 7 | 100 | 1.35e-40 | 142 |
| MsG0380016316.01.T01 | MTR_7g014620 | 27.991 | 468 | 257 | 15 | 16 | 439 | 1 | 432 | 6.40e-40 | 149 |
| MsG0380016316.01.T01 | MTR_7g096620 | 59.504 | 121 | 42 | 3 | 218 | 334 | 7 | 124 | 1.04e-39 | 139 |
| MsG0380016316.01.T01 | MTR_3g435290 | 64.463 | 121 | 16 | 1 | 350 | 443 | 1 | 121 | 1.13e-39 | 139 |
| MsG0380016316.01.T01 | MTR_2g104220 | 76.623 | 77 | 18 | 0 | 146 | 222 | 16 | 92 | 1.72e-39 | 137 |
| MsG0380016316.01.T01 | MTR_1g090750 | 67.010 | 97 | 30 | 1 | 215 | 309 | 4 | 100 | 2.98e-37 | 133 |
| MsG0380016316.01.T01 | MTR_7g014360 | 27.764 | 407 | 211 | 11 | 75 | 439 | 21 | 386 | 4.85e-37 | 140 |
| MsG0380016316.01.T01 | MTR_1g036160 | 69.149 | 94 | 27 | 1 | 218 | 309 | 86 | 179 | 1.44e-36 | 133 |
| MsG0380016316.01.T01 | MTR_7g014630 | 29.054 | 296 | 173 | 11 | 10 | 284 | 10 | 289 | 1.33e-26 | 110 |
| MsG0380016316.01.T01 | MTR_8g096530 | 30.256 | 390 | 220 | 16 | 10 | 391 | 8 | 353 | 3.93e-24 | 104 |
| MsG0380016316.01.T01 | MTR_7g014180 | 33.889 | 180 | 102 | 4 | 10 | 185 | 8 | 174 | 7.32e-20 | 87.0 |
| MsG0380016316.01.T01 | MTR_3g098980 | 26.506 | 332 | 205 | 12 | 66 | 393 | 66 | 362 | 2.54e-19 | 90.1 |
| MsG0380016316.01.T01 | MTR_2g064495 | 25.945 | 397 | 246 | 17 | 13 | 403 | 7 | 361 | 4.71e-19 | 89.4 |
| MsG0380016316.01.T01 | MTR_4g007540 | 25.758 | 396 | 249 | 14 | 13 | 403 | 7 | 362 | 4.22e-18 | 86.7 |
| MsG0380016316.01.T01 | MTR_6g015310 | 26.962 | 293 | 161 | 11 | 41 | 325 | 5 | 252 | 4.43e-18 | 85.5 |
| MsG0380016316.01.T01 | MTR_2g105330 | 25.441 | 397 | 248 | 17 | 13 | 403 | 7 | 361 | 9.21e-18 | 85.5 |
| MsG0380016316.01.T01 | MTR_8g075610 | 26.271 | 354 | 214 | 15 | 41 | 389 | 25 | 336 | 1.94e-17 | 84.3 |
| MsG0380016316.01.T01 | MTR_3g101900 | 25.000 | 388 | 242 | 13 | 30 | 408 | 30 | 377 | 9.83e-17 | 82.4 |
| MsG0380016316.01.T01 | MTR_2g104210 | 68.000 | 50 | 11 | 2 | 273 | 320 | 1 | 47 | 3.81e-15 | 70.5 |
| MsG0380016316.01.T01 | MTR_3g049150 | 24.068 | 295 | 179 | 10 | 63 | 347 | 52 | 311 | 4.24e-15 | 77.4 |
| MsG0380016316.01.T01 | MTR_7g085930 | 23.647 | 351 | 240 | 11 | 47 | 391 | 40 | 368 | 7.61e-15 | 76.6 |
| MsG0380016316.01.T01 | MTR_7g085990 | 24.118 | 340 | 226 | 11 | 47 | 378 | 36 | 351 | 1.12e-14 | 76.3 |
| MsG0380016316.01.T01 | MTR_4g127650 | 24.297 | 391 | 260 | 14 | 17 | 404 | 18 | 375 | 1.24e-14 | 76.3 |
| MsG0380016316.01.T01 | MTR_4g097090 | 24.570 | 407 | 256 | 15 | 17 | 416 | 17 | 379 | 2.64e-12 | 68.9 |
| MsG0380016316.01.T01 | MTR_7g086000 | 23.797 | 374 | 254 | 9 | 17 | 386 | 12 | 358 | 3.31e-12 | 68.6 |
| MsG0380016316.01.T01 | MTR_4g055170 | 26.076 | 395 | 250 | 20 | 15 | 401 | 18 | 378 | 3.43e-12 | 68.6 |
| MsG0380016316.01.T01 | MTR_4g022720 | 24.781 | 343 | 211 | 14 | 20 | 355 | 14 | 316 | 3.32e-11 | 65.5 |
| MsG0380016316.01.T01 | MTR_4g022800 | 23.951 | 405 | 258 | 16 | 5 | 395 | 1 | 369 | 4.46e-11 | 65.1 |
| MsG0380016316.01.T01 | MTR_3g086020 | 22.938 | 388 | 219 | 17 | 8 | 385 | 4 | 321 | 8.87e-11 | 63.9 |
| MsG0380016316.01.T02 | MTR_3g087640 | 92.243 | 477 | 31 | 3 | 1 | 471 | 1 | 477 | 0.0 | 895 |
| MsG0380016316.01.T02 | MTR_2g089650 | 65.328 | 473 | 155 | 4 | 1 | 470 | 1 | 467 | 0.0 | 634 |
| MsG0380016316.01.T02 | MTR_2g089735 | 67.377 | 469 | 145 | 5 | 7 | 471 | 2 | 466 | 0.0 | 624 |
| MsG0380016316.01.T02 | MTR_2g089755 | 64.606 | 469 | 161 | 3 | 7 | 471 | 13 | 480 | 0.0 | 609 |
| MsG0380016316.01.T02 | MTR_3g435300 | 78.626 | 262 | 55 | 1 | 9 | 270 | 3 | 263 | 6.31e-150 | 428 |
| MsG0380016316.01.T02 | MTR_2g089765 | 35.861 | 488 | 262 | 15 | 10 | 467 | 17 | 483 | 1.29e-84 | 269 |
| MsG0380016316.01.T02 | MTR_7g014330 | 36.498 | 474 | 264 | 13 | 10 | 466 | 3 | 456 | 2.37e-82 | 262 |
| MsG0380016316.01.T02 | MTR_6g015850 | 37.740 | 469 | 251 | 15 | 11 | 467 | 19 | 458 | 1.64e-78 | 252 |
| MsG0380016316.01.T02 | MTR_7g014250 | 35.158 | 475 | 269 | 13 | 10 | 466 | 3 | 456 | 2.03e-78 | 252 |
| MsG0380016316.01.T02 | MTR_2g089670 | 35.010 | 477 | 268 | 16 | 10 | 466 | 23 | 477 | 1.05e-76 | 248 |
| MsG0380016316.01.T02 | MTR_7g015860 | 32.645 | 484 | 276 | 13 | 8 | 467 | 4 | 461 | 2.42e-75 | 244 |
| MsG0380016316.01.T02 | MTR_8g012750 | 34.221 | 488 | 273 | 14 | 10 | 467 | 4 | 473 | 3.77e-74 | 241 |
| MsG0380016316.01.T02 | MTR_7g014230 | 34.100 | 478 | 274 | 13 | 7 | 465 | 2 | 457 | 5.71e-74 | 240 |
| MsG0380016316.01.T02 | MTR_6g015815 | 35.853 | 463 | 245 | 15 | 26 | 467 | 30 | 461 | 7.45e-73 | 237 |
| MsG0380016316.01.T02 | MTR_7g014200 | 33.678 | 484 | 287 | 13 | 1 | 466 | 1 | 468 | 9.09e-73 | 238 |
| MsG0380016316.01.T02 | MTR_3g028210 | 33.473 | 478 | 277 | 14 | 10 | 467 | 9 | 465 | 2.09e-72 | 236 |
| MsG0380016316.01.T02 | MTR_6g015830 | 36.147 | 462 | 251 | 17 | 23 | 467 | 27 | 461 | 2.56e-69 | 228 |
| MsG0380016316.01.T02 | MTR_7g014610 | 33.742 | 489 | 270 | 15 | 10 | 466 | 9 | 475 | 2.83e-68 | 226 |
| MsG0380016316.01.T02 | MTR_7g014160 | 33.814 | 485 | 272 | 18 | 10 | 466 | 10 | 473 | 9.86e-68 | 224 |
| MsG0380016316.01.T02 | MTR_3g435290 | 80.992 | 121 | 23 | 0 | 350 | 470 | 1 | 121 | 3.21e-62 | 198 |
| MsG0380016316.01.T02 | MTR_6g015320 | 30.258 | 466 | 284 | 12 | 17 | 467 | 16 | 455 | 5.37e-62 | 209 |
| MsG0380016316.01.T02 | MTR_6g015315 | 32.420 | 438 | 260 | 13 | 43 | 467 | 39 | 453 | 5.23e-61 | 206 |
| MsG0380016316.01.T02 | MTR_4g032380 | 63.514 | 148 | 36 | 2 | 158 | 303 | 100 | 231 | 2.04e-60 | 197 |
| MsG0380016316.01.T02 | MTR_4g032380 | 58.750 | 80 | 30 | 1 | 9 | 88 | 32 | 108 | 4.79e-20 | 89.4 |
| MsG0380016316.01.T02 | MTR_7g013850 | 30.595 | 487 | 293 | 13 | 10 | 466 | 9 | 480 | 3.81e-54 | 189 |
| MsG0380016316.01.T02 | MTR_2g089665 | 30.337 | 445 | 183 | 14 | 10 | 440 | 3 | 334 | 1.03e-51 | 178 |
| MsG0380016316.01.T02 | MTR_7g014620 | 30.556 | 468 | 272 | 15 | 16 | 466 | 1 | 432 | 1.11e-50 | 178 |
| MsG0380016316.01.T02 | MTR_7g014360 | 30.713 | 407 | 226 | 11 | 75 | 466 | 21 | 386 | 1.63e-48 | 171 |
| MsG0380016316.01.T02 | MTR_2g067320 | 71.277 | 94 | 25 | 1 | 218 | 309 | 7 | 100 | 1.84e-40 | 142 |
| MsG0380016316.01.T02 | MTR_7g096620 | 59.504 | 121 | 42 | 3 | 218 | 334 | 7 | 124 | 1.59e-39 | 139 |
| MsG0380016316.01.T02 | MTR_2g104220 | 76.623 | 77 | 18 | 0 | 146 | 222 | 16 | 92 | 2.49e-39 | 137 |
| MsG0380016316.01.T02 | MTR_1g090750 | 67.010 | 97 | 30 | 1 | 215 | 309 | 4 | 100 | 3.85e-37 | 133 |
| MsG0380016316.01.T02 | MTR_1g036160 | 69.149 | 94 | 27 | 1 | 218 | 309 | 86 | 179 | 1.62e-36 | 133 |
| MsG0380016316.01.T02 | MTR_8g096530 | 29.904 | 418 | 243 | 17 | 10 | 420 | 8 | 382 | 1.11e-27 | 115 |
| MsG0380016316.01.T02 | MTR_7g014670 | 37.306 | 193 | 113 | 6 | 281 | 468 | 72 | 261 | 6.59e-27 | 109 |
| MsG0380016316.01.T02 | MTR_7g014630 | 29.054 | 296 | 173 | 11 | 10 | 284 | 10 | 289 | 2.40e-26 | 110 |
| MsG0380016316.01.T02 | MTR_2g064495 | 25.431 | 464 | 289 | 20 | 13 | 461 | 7 | 428 | 3.14e-25 | 107 |
| MsG0380016316.01.T02 | MTR_6g015310 | 25.301 | 415 | 213 | 15 | 41 | 444 | 5 | 333 | 8.61e-25 | 105 |
| MsG0380016316.01.T02 | MTR_8g075610 | 25.977 | 435 | 267 | 17 | 41 | 462 | 25 | 417 | 3.06e-24 | 105 |
| MsG0380016316.01.T02 | MTR_3g101900 | 25.115 | 434 | 278 | 13 | 30 | 450 | 30 | 429 | 7.26e-24 | 104 |
| MsG0380016316.01.T02 | MTR_7g014310 | 29.070 | 344 | 168 | 14 | 114 | 449 | 31 | 306 | 7.33e-24 | 102 |
| MsG0380016316.01.T02 | MTR_2g105330 | 25.000 | 464 | 291 | 20 | 13 | 461 | 7 | 428 | 1.73e-23 | 102 |
| MsG0380016316.01.T02 | MTR_3g098980 | 25.622 | 402 | 259 | 12 | 66 | 462 | 66 | 432 | 1.84e-23 | 102 |
| MsG0380016316.01.T02 | MTR_4g007540 | 24.784 | 464 | 295 | 17 | 13 | 462 | 7 | 430 | 9.24e-23 | 100 |
| MsG0380016316.01.T02 | MTR_4g022825 | 25.109 | 458 | 294 | 17 | 12 | 456 | 6 | 427 | 5.23e-21 | 95.5 |
| MsG0380016316.01.T02 | MTR_4g022800 | 24.678 | 466 | 300 | 17 | 5 | 456 | 1 | 429 | 8.16e-21 | 95.1 |
| MsG0380016316.01.T02 | MTR_4g022720 | 24.722 | 449 | 286 | 17 | 20 | 456 | 14 | 422 | 5.49e-20 | 92.4 |
| MsG0380016316.01.T02 | MTR_7g014180 | 33.889 | 180 | 102 | 4 | 10 | 185 | 8 | 174 | 9.06e-20 | 87.0 |
| MsG0380016316.01.T02 | MTR_4g022670 | 24.249 | 466 | 309 | 14 | 5 | 460 | 1 | 432 | 6.90e-19 | 89.4 |
| MsG0380016316.01.T02 | MTR_3g026950 | 24.008 | 479 | 294 | 21 | 11 | 458 | 4 | 443 | 8.32e-19 | 89.0 |
| MsG0380016316.01.T02 | MTR_4g015180 | 25.911 | 494 | 285 | 21 | 11 | 453 | 8 | 471 | 3.32e-18 | 87.4 |
| MsG0380016316.01.T02 | MTR_4g094828 | 24.449 | 454 | 285 | 20 | 23 | 456 | 22 | 437 | 1.14e-17 | 85.5 |
| MsG0380016316.01.T02 | MTR_7g085930 | 23.308 | 399 | 260 | 12 | 47 | 421 | 40 | 416 | 3.23e-17 | 84.3 |
| MsG0380016316.01.T02 | MTR_3g049150 | 23.472 | 409 | 245 | 17 | 63 | 440 | 52 | 423 | 3.70e-16 | 80.9 |
| MsG0380016316.01.T02 | MTR_0190s0020 | 24.396 | 455 | 280 | 19 | 21 | 456 | 20 | 429 | 8.38e-16 | 79.7 |
| MsG0380016316.01.T02 | MTR_4g127650 | 24.301 | 465 | 295 | 19 | 17 | 458 | 18 | 448 | 9.45e-16 | 79.7 |
| MsG0380016316.01.T02 | MTR_3g070170 | 25.208 | 480 | 297 | 19 | 11 | 460 | 14 | 461 | 9.94e-16 | 79.7 |
| MsG0380016316.01.T02 | MTR_4g022290 | 24.027 | 437 | 263 | 19 | 30 | 446 | 35 | 422 | 1.74e-15 | 79.0 |
| MsG0380016316.01.T02 | MTR_3g086020 | 23.418 | 474 | 271 | 21 | 8 | 460 | 4 | 406 | 2.70e-15 | 78.2 |
| MsG0380016316.01.T02 | MTR_2g104210 | 68.000 | 50 | 11 | 2 | 273 | 320 | 1 | 47 | 3.47e-15 | 70.5 |
| MsG0380016316.01.T02 | MTR_3g088420 | 25.450 | 444 | 267 | 19 | 30 | 456 | 24 | 420 | 3.85e-15 | 77.8 |
| MsG0380016316.01.T02 | MTR_7g086000 | 23.585 | 424 | 277 | 10 | 17 | 420 | 12 | 408 | 4.84e-15 | 77.4 |
| MsG0380016316.01.T02 | MTR_4g094832 | 27.215 | 316 | 192 | 14 | 156 | 460 | 133 | 421 | 5.04e-14 | 74.3 |
| MsG0380016316.01.T02 | MTR_4g097090 | 24.444 | 450 | 276 | 17 | 17 | 444 | 17 | 424 | 2.39e-13 | 72.4 |
| MsG0380016316.01.T02 | MTR_8g041770 | 27.241 | 290 | 165 | 13 | 154 | 430 | 144 | 400 | 2.92e-13 | 72.0 |
| MsG0380016316.01.T02 | MTR_7g014205 | 32.174 | 115 | 65 | 2 | 314 | 426 | 7 | 110 | 8.13e-13 | 65.5 |
| MsG0380016316.01.T02 | MTR_8g079710 | 23.288 | 438 | 269 | 17 | 40 | 456 | 41 | 432 | 1.92e-12 | 69.3 |
| MsG0380016316.01.T02 | MTR_7g014210 | 35.922 | 103 | 63 | 2 | 327 | 426 | 24 | 126 | 8.60e-12 | 63.9 |
| MsG0380016316.01.T02 | MTR_4g055170 | 26.171 | 363 | 228 | 18 | 15 | 371 | 18 | 346 | 1.70e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016316.01.T01 | AT1G03940 | 32.231 | 484 | 252 | 23 | 10 | 442 | 9 | 467 | 2.24e-59 | 201 |
| MsG0380016316.01.T01 | AT1G03495 | 33.427 | 356 | 203 | 15 | 9 | 351 | 8 | 342 | 7.30e-48 | 167 |
| MsG0380016316.01.T01 | AT3G29635 | 29.425 | 452 | 259 | 12 | 28 | 441 | 27 | 456 | 3.60e-45 | 163 |
| MsG0380016316.01.T01 | AT3G29670 | 28.964 | 473 | 264 | 14 | 11 | 439 | 5 | 449 | 9.00e-45 | 162 |
| MsG0380016316.01.T01 | AT3G29680 | 29.386 | 456 | 255 | 14 | 28 | 443 | 23 | 451 | 1.51e-43 | 159 |
| MsG0380016316.01.T01 | AT5G61160 | 26.237 | 465 | 280 | 14 | 10 | 434 | 4 | 445 | 9.86e-39 | 145 |
| MsG0380016316.01.T01 | AT5G39090 | 27.253 | 466 | 277 | 15 | 12 | 440 | 8 | 448 | 5.35e-38 | 144 |
| MsG0380016316.01.T01 | AT3G29590 | 30.297 | 472 | 255 | 18 | 11 | 440 | 10 | 449 | 9.74e-37 | 140 |
| MsG0380016316.01.T01 | AT5G39080 | 26.261 | 476 | 287 | 16 | 11 | 441 | 7 | 463 | 3.99e-36 | 139 |
| MsG0380016316.01.T01 | AT5G39050 | 28.092 | 477 | 278 | 17 | 10 | 440 | 11 | 468 | 9.11e-32 | 127 |
| MsG0380016316.01.T01 | AT3G48720 | 25.455 | 385 | 238 | 17 | 16 | 393 | 16 | 358 | 1.96e-19 | 90.5 |
| MsG0380016316.01.T01 | AT5G41040 | 24.810 | 395 | 236 | 17 | 13 | 393 | 21 | 368 | 1.21e-16 | 82.0 |
| MsG0380016316.01.T01 | AT5G41040 | 24.810 | 395 | 236 | 17 | 13 | 393 | 37 | 384 | 1.87e-16 | 81.6 |
| MsG0380016316.01.T01 | AT2G19070 | 24.251 | 367 | 241 | 13 | 17 | 378 | 12 | 346 | 6.88e-16 | 80.1 |
| MsG0380016316.01.T01 | AT5G48930 | 24.339 | 378 | 248 | 13 | 13 | 389 | 7 | 347 | 1.18e-15 | 79.3 |
| MsG0380016316.01.T01 | AT5G42830 | 23.262 | 374 | 236 | 13 | 61 | 421 | 59 | 394 | 5.73e-12 | 67.8 |
| MsG0380016316.01.T01 | AT4G31910 | 22.917 | 384 | 245 | 12 | 11 | 375 | 11 | 362 | 2.30e-11 | 65.9 |
| MsG0380016316.01.T02 | AT1G03940 | 33.126 | 483 | 276 | 20 | 10 | 469 | 9 | 467 | 2.43e-70 | 231 |
| MsG0380016316.01.T02 | AT3G29670 | 31.224 | 474 | 279 | 15 | 11 | 466 | 5 | 449 | 5.81e-56 | 192 |
| MsG0380016316.01.T02 | AT3G29680 | 31.579 | 456 | 272 | 14 | 28 | 470 | 23 | 451 | 7.70e-56 | 192 |
| MsG0380016316.01.T02 | AT3G29635 | 31.637 | 452 | 276 | 13 | 28 | 468 | 27 | 456 | 1.68e-55 | 192 |
| MsG0380016316.01.T02 | AT5G61160 | 29.032 | 465 | 294 | 14 | 10 | 461 | 4 | 445 | 2.72e-52 | 183 |
| MsG0380016316.01.T02 | AT5G39090 | 28.326 | 466 | 299 | 13 | 12 | 467 | 8 | 448 | 7.42e-48 | 171 |
| MsG0380016316.01.T02 | AT5G39080 | 28.302 | 477 | 303 | 15 | 11 | 468 | 7 | 463 | 1.19e-47 | 171 |
| MsG0380016316.01.T02 | AT1G03495 | 33.427 | 356 | 203 | 15 | 9 | 351 | 8 | 342 | 1.27e-47 | 167 |
| MsG0380016316.01.T02 | AT3G29590 | 31.780 | 472 | 275 | 17 | 11 | 467 | 10 | 449 | 1.57e-47 | 170 |
| MsG0380016316.01.T02 | AT5G39050 | 29.979 | 477 | 296 | 15 | 10 | 467 | 11 | 468 | 8.56e-44 | 160 |
| MsG0380016316.01.T02 | AT5G48930 | 23.644 | 461 | 304 | 16 | 13 | 462 | 7 | 430 | 9.49e-21 | 94.7 |
| MsG0380016316.01.T02 | AT5G41040 | 24.408 | 422 | 259 | 16 | 13 | 421 | 21 | 395 | 1.06e-20 | 94.7 |
| MsG0380016316.01.T02 | AT5G41040 | 24.408 | 422 | 259 | 16 | 13 | 421 | 37 | 411 | 1.53e-20 | 94.4 |
| MsG0380016316.01.T02 | AT3G50270 | 23.992 | 471 | 288 | 19 | 6 | 450 | 3 | 429 | 4.50e-18 | 87.0 |
| MsG0380016316.01.T02 | AT3G50280 | 24.887 | 442 | 261 | 19 | 7 | 424 | 2 | 396 | 7.21e-18 | 86.3 |
| MsG0380016316.01.T02 | AT5G63560 | 23.487 | 413 | 268 | 15 | 13 | 421 | 13 | 381 | 7.31e-18 | 85.9 |
| MsG0380016316.01.T02 | AT2G39980 | 24.194 | 496 | 296 | 21 | 11 | 460 | 10 | 471 | 2.52e-17 | 84.7 |
| MsG0380016316.01.T02 | AT5G23940 | 25.652 | 460 | 271 | 20 | 30 | 455 | 25 | 447 | 3.18e-17 | 84.3 |
| MsG0380016316.01.T02 | AT5G42830 | 23.866 | 419 | 263 | 15 | 61 | 460 | 59 | 440 | 3.39e-17 | 84.3 |
| MsG0380016316.01.T02 | AT5G57840 | 24.375 | 480 | 299 | 17 | 10 | 468 | 4 | 440 | 3.46e-17 | 84.0 |
| MsG0380016316.01.T02 | AT2G19070 | 23.333 | 450 | 288 | 17 | 17 | 443 | 12 | 427 | 4.55e-17 | 84.0 |
| MsG0380016316.01.T02 | AT5G38130 | 22.788 | 452 | 286 | 15 | 7 | 444 | 22 | 424 | 2.11e-16 | 81.6 |
| MsG0380016316.01.T02 | AT5G01210 | 25.159 | 473 | 295 | 18 | 12 | 453 | 9 | 453 | 1.20e-15 | 79.7 |
| MsG0380016316.01.T02 | AT5G07850 | 24.738 | 477 | 298 | 22 | 7 | 460 | 6 | 444 | 1.95e-15 | 79.0 |
| MsG0380016316.01.T02 | AT1G27620 | 26.190 | 420 | 251 | 16 | 13 | 421 | 13 | 384 | 1.80e-14 | 75.9 |
| MsG0380016316.01.T02 | AT5G07860 | 24.788 | 472 | 292 | 19 | 7 | 456 | 6 | 436 | 3.13e-14 | 75.1 |
| MsG0380016316.01.T02 | AT3G29690 | 30.667 | 150 | 99 | 3 | 320 | 467 | 33 | 179 | 4.38e-13 | 68.2 |
| MsG0380016316.01.T02 | AT5G07870 | 23.864 | 440 | 279 | 17 | 7 | 423 | 6 | 412 | 4.39e-12 | 68.6 |
| MsG0380016316.01.T02 | AT3G50280 | 25.260 | 289 | 171 | 12 | 151 | 424 | 8 | 266 | 7.42e-12 | 66.6 |
| MsG0380016316.01.T02 | AT4G31910 | 22.917 | 384 | 245 | 12 | 11 | 375 | 11 | 362 | 2.41e-11 | 66.2 |
Find 74 sgRNAs with CRISPR-Local
Find 102 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATACCAGAGGGGTATTT+TGG | 0.151654 | 3:-81875825 | MsG0380016316.01.T02:CDS |
| ACAAATTTAGATAGAAATTT+TGG | 0.182553 | 3:+81875966 | None:intergenic |
| TGAGATGGTGCATGCGTTTA+AGG | 0.195519 | 3:-81875553 | MsG0380016316.01.T02:CDS |
| GGAGAAGGTGGACTTGAGTT+TGG | 0.247995 | 3:-81875504 | MsG0380016316.01.T02:CDS |
| AATGTTTATGAGACCGATTT+TGG | 0.269268 | 3:-81875597 | MsG0380016316.01.T02:CDS |
| GCAATCATTTCATGAAATCT+TGG | 0.347391 | 3:-81876268 | MsG0380016316.01.T02:CDS |
| TGCACCATCTCAACTTTAAC+AGG | 0.358365 | 3:+81875564 | None:intergenic |
| AGTTTATGTTCTGCTCCTAT+AGG | 0.377376 | 3:+81876812 | None:intergenic |
| GTTGTTGTTGTTCTTGTTGC+AGG | 0.384008 | 3:+81876767 | None:intergenic |
| CAGCTACATCACCTCCTTGA+TGG | 0.384620 | 3:+81876237 | None:intergenic |
| CACATTCACCCTTCCATTGT+TGG | 0.385846 | 3:-81876369 | MsG0380016316.01.T02:CDS |
| GAGAAGGTGGACTTGAGTTT+GGG | 0.395274 | 3:-81875503 | MsG0380016316.01.T02:CDS |
| AATAAGCGTTTAGCGTAGAT+TGG | 0.403428 | 3:+81876704 | None:intergenic |
| AGTAAAACTATGTATATGTC+TGG | 0.416871 | 3:-81875654 | MsG0380016316.01.T02:CDS |
| GTCATTAATATCTTCAATCC+TGG | 0.423090 | 3:+81876403 | None:intergenic |
| TAAGAAATGGCAAAACCTAT+AGG | 0.429096 | 3:-81876827 | None:intergenic |
| GAAAGAGATTGTTTGAGAGA+TGG | 0.430195 | 3:+81876632 | None:intergenic |
| ATAAGATTCTCAAGTCCTCT+TGG | 0.434524 | 3:+81876170 | None:intergenic |
| CATCATTTCTTCCCTCTCGC+TGG | 0.448126 | 3:-81876599 | MsG0380016316.01.T02:CDS |
| GGTGGTGTTTGTTGGAGAGA+TGG | 0.452853 | 3:+81876477 | None:intergenic |
| AGGTCTTCCAAATCCAAAAT+CGG | 0.460413 | 3:+81875584 | None:intergenic |
| CCCAACCATGGTGTTTGCGT+TGG | 0.463801 | 3:-81876326 | MsG0380016316.01.T02:CDS |
| TAAGATTCTCAAGTCCTCTT+GGG | 0.479124 | 3:+81876171 | None:intergenic |
| AAAGGTGACGGAGTCTTCTT+CGG | 0.484341 | 3:+81876529 | None:intergenic |
| GCCAACGCAAACACCATGGT+TGG | 0.488721 | 3:+81876325 | None:intergenic |
| TGGTTGGTTGAATGAGGAAA+AGG | 0.489129 | 3:+81876674 | None:intergenic |
| GAGATGGTGCATGCGTTTAA+GGG | 0.496036 | 3:-81875552 | MsG0380016316.01.T02:CDS |
| TTTGGAAAAGAAGAAATTGA+GGG | 0.502317 | 3:-81876044 | MsG0380016316.01.T02:CDS |
| AGATATTAATGACATTGAAA+AGG | 0.509159 | 3:-81876393 | MsG0380016316.01.T02:CDS |
| CAATATTAACACACAAAACC+AGG | 0.512389 | 3:-81876421 | MsG0380016316.01.T02:CDS |
| CCAACGCAAACACCATGGTT+GGG | 0.516697 | 3:+81876326 | None:intergenic |
| TGTTGTTAAGGTAATTGAAA+AGG | 0.526288 | 3:-81875733 | MsG0380016316.01.T02:CDS |
| CTTGCAAAGCCAACAATGGA+AGG | 0.529919 | 3:+81876360 | None:intergenic |
| TCTTCGGTGCAGCGAATGAA+AGG | 0.530046 | 3:+81876545 | None:intergenic |
| TGGGTTGGTACTTAAAAGTG+AGG | 0.534033 | 3:-81875484 | MsG0380016316.01.T02:CDS |
| GGAAATCAATTGTTTCTGCA+TGG | 0.534473 | 3:-81875633 | MsG0380016316.01.T02:CDS |
| AAGTGCAACGATGAAGAGAA+AGG | 0.537353 | 3:-81875784 | MsG0380016316.01.T02:CDS |
| TCTCTTGCTGAAAGTGGAGA+TGG | 0.549776 | 3:-81875525 | MsG0380016316.01.T02:CDS |
| GTCTCATAAACATTAAACTT+AGG | 0.550716 | 3:+81875606 | None:intergenic |
| GGTGTGTCTCTTGCTGAAAG+TGG | 0.551045 | 3:-81875531 | MsG0380016316.01.T02:CDS |
| CTCGTAAAGATGTAGAAGAC+TGG | 0.552031 | 3:-81875686 | MsG0380016316.01.T02:CDS |
| CGATGATTCGATGATGGTAA+AGG | 0.563360 | 3:+81876511 | None:intergenic |
| GATGAAGAGAAAGGACATGA+AGG | 0.568217 | 3:-81875775 | MsG0380016316.01.T02:CDS |
| GTTGCTCAAAGTCAAAGCAC+TGG | 0.572117 | 3:-81876101 | MsG0380016316.01.T02:CDS |
| TTCTCTTCTCTCATTCAACA+AGG | 0.574223 | 3:-81875450 | MsG0380016316.01.T02:CDS |
| CAGTTTCCAAAATACCCCTC+TGG | 0.574352 | 3:+81875819 | None:intergenic |
| TCTCTTCTCTCATTCAACAA+GGG | 0.577011 | 3:-81875449 | MsG0380016316.01.T02:CDS |
| TTCGATGATGGTAAAGGTGA+CGG | 0.584351 | 3:+81876517 | None:intergenic |
| CAGTCTTCTACATCTTTACG+AGG | 0.588222 | 3:+81875687 | None:intergenic |
| ATGAAGAGAAAGGACATGAA+GGG | 0.596540 | 3:-81875774 | MsG0380016316.01.T02:CDS |
| GAAATGAGATTTCCAGCGAG+AGG | 0.596654 | 3:+81876587 | None:intergenic |
| AGGTGGACTTGAGTTTGGGT+TGG | 0.597792 | 3:-81875499 | MsG0380016316.01.T02:CDS |
| CATTACATATTGTCACGTGA+TGG | 0.601868 | 3:-81876303 | MsG0380016316.01.T02:CDS |
| ACATATTGTCACGTGATGGA+TGG | 0.602963 | 3:-81876299 | MsG0380016316.01.T02:CDS |
| AAATGAGATTTCCAGCGAGA+GGG | 0.605378 | 3:+81876588 | None:intergenic |
| CTTGGCTACTCAATACCAGA+GGG | 0.607440 | 3:-81875834 | MsG0380016316.01.T02:CDS |
| GTCTCAATATTTCCCAACCA+TGG | 0.616555 | 3:-81876338 | MsG0380016316.01.T02:CDS |
| ATCTTGCGATGATTCGATGA+TGG | 0.618919 | 3:+81876505 | None:intergenic |
| GAGACTTGCAAAGCCAACAA+TGG | 0.623901 | 3:+81876356 | None:intergenic |
| TGTGTGTTAATATTGGAACA+AGG | 0.625336 | 3:+81876429 | None:intergenic |
| TTGGAAAAGAAGAAATTGAG+GGG | 0.626217 | 3:-81876043 | MsG0380016316.01.T02:CDS |
| GACCAGCAAAATGCAAGTCG+AGG | 0.629102 | 3:+81876726 | None:intergenic |
| GAAAGTGGAGATGGAGAAGG+TGG | 0.639469 | 3:-81875516 | MsG0380016316.01.T02:CDS |
| AAGACCTGTTAAAGTTGAGA+TGG | 0.641370 | 3:-81875568 | MsG0380016316.01.T02:CDS |
| TTGCAAAGCCAACAATGGAA+GGG | 0.646182 | 3:+81876361 | None:intergenic |
| TGTGATTGCAGAGATAGACT+TGG | 0.654998 | 3:-81875852 | MsG0380016316.01.T02:CDS |
| AAAACTTCTCTATCAAAACA+AGG | 0.666225 | 3:+81876200 | None:intergenic |
| GCAATGCATAGAAATGATGA+CGG | 0.667461 | 3:-81875906 | MsG0380016316.01.T02:CDS |
| TAATGCCAACGCAAACACCA+TGG | 0.675041 | 3:+81876321 | None:intergenic |
| TGCAAGTCGAGGAATGTGAG+AGG | 0.687948 | 3:+81876737 | None:intergenic |
| GCTGAAAGTGGAGATGGAGA+AGG | 0.692838 | 3:-81875519 | MsG0380016316.01.T02:CDS |
| ACTTGGCTACTCAATACCAG+AGG | 0.710749 | 3:-81875835 | MsG0380016316.01.T02:CDS |
| ACTTCTCTATCAAAACAAGG+TGG | 0.730371 | 3:+81876203 | None:intergenic |
| TTGGCTACTCAATACCAGAG+GGG | 0.789894 | 3:-81875833 | MsG0380016316.01.T02:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATTTAGATAGAAATTT+TGG | + | Chr3:81876286-81876305 | None:intergenic | 15.0% |
| !!! | ATTTTTTTACAAGAAAATCT+TGG | - | Chr3:81876113-81876132 | MsG0380016316.01.T02:CDS | 15.0% |
| !!! | TTTAAGGTAATTATTGTTTT+TGG | - | Chr3:81876187-81876206 | MsG0380016316.01.T02:CDS | 15.0% |
| !! | AGATATTAATGACATTGAAA+AGG | - | Chr3:81875856-81875875 | MsG0380016316.01.T02:CDS | 20.0% |
| !!! | TATTTTCTTTGAGATTTTTC+AGG | + | Chr3:81875796-81875815 | None:intergenic | 20.0% |
| ! | AAAACTTCTCTATCAAAACA+AGG | + | Chr3:81876052-81876071 | None:intergenic | 25.0% |
| ! | AGTAAAACTATGTATATGTC+TGG | - | Chr3:81876595-81876614 | MsG0380016316.01.T02:CDS | 25.0% |
| ! | GTCTCATAAACATTAAACTT+AGG | + | Chr3:81876646-81876665 | None:intergenic | 25.0% |
| ! | TGTTGTTAAGGTAATTGAAA+AGG | - | Chr3:81876516-81876535 | MsG0380016316.01.T02:CDS | 25.0% |
| ! | TTTGGAAAAGAAGAAATTGA+GGG | - | Chr3:81876205-81876224 | MsG0380016316.01.T02:CDS | 25.0% |
| !! | AGAACATGAAGATTCTTTTA+AGG | - | Chr3:81876171-81876190 | MsG0380016316.01.T02:CDS | 25.0% |
| !! | TTGTAACTAGTGCTTTTATT+TGG | - | Chr3:81876305-81876324 | MsG0380016316.01.T02:CDS | 25.0% |
| !!! | TAGTTTTGTTGATGTTGTTA+AGG | - | Chr3:81876504-81876523 | MsG0380016316.01.T02:CDS | 25.0% |
| !!! | TGTAACTAGTGCTTTTATTT+GGG | - | Chr3:81876306-81876325 | MsG0380016316.01.T02:CDS | 25.0% |
| !!! | TTTTGATAGAGAAGTTTTGA+GGG | - | Chr3:81876054-81876073 | MsG0380016316.01.T02:CDS | 25.0% |
| !!! | TTTTGGAAAAGAAGAAATTG+AGG | - | Chr3:81876204-81876223 | MsG0380016316.01.T02:CDS | 25.0% |
| AAATTGAGGGGATGAAAAAA+TGG | - | Chr3:81876218-81876237 | MsG0380016316.01.T02:CDS | 30.0% | |
| AATTGAGGGGATGAAAAAAT+GGG | - | Chr3:81876219-81876238 | MsG0380016316.01.T02:CDS | 30.0% | |
| CAATATTAACACACAAAACC+AGG | - | Chr3:81875828-81875847 | MsG0380016316.01.T02:CDS | 30.0% | |
| GCAATCATTTCATGAAATCT+TGG | - | Chr3:81875981-81876000 | MsG0380016316.01.T02:CDS | 30.0% | |
| GTCATTAATATCTTCAATCC+TGG | + | Chr3:81875849-81875868 | None:intergenic | 30.0% | |
| TGTGTGTTAATATTGGAACA+AGG | + | Chr3:81875823-81875842 | None:intergenic | 30.0% | |
| TTGGAAAAGAAGAAATTGAG+GGG | - | Chr3:81876206-81876225 | MsG0380016316.01.T02:CDS | 30.0% | |
| !! | AATGTTTATGAGACCGATTT+TGG | - | Chr3:81876652-81876671 | MsG0380016316.01.T02:CDS | 30.0% |
| !! | GTTTTGATAGAGAAGTTTTG+AGG | - | Chr3:81876053-81876072 | MsG0380016316.01.T02:CDS | 30.0% |
| !!! | CTGGTTTTGTGTGTTAATAT+TGG | + | Chr3:81875830-81875849 | None:intergenic | 30.0% |
| !!! | GAAGTGTTGTTTTGCAAAAA+TGG | + | Chr3:81875598-81875617 | None:intergenic | 30.0% |
| !!! | TGTTGTTTTGCAAAAATGGT+TGG | + | Chr3:81875594-81875613 | None:intergenic | 30.0% |
| !!! | TTTCTTTGAGATTTTTCAGG+TGG | + | Chr3:81875793-81875812 | None:intergenic | 30.0% |
| AAGACCTGTTAAAGTTGAGA+TGG | - | Chr3:81876681-81876700 | MsG0380016316.01.T02:CDS | 35.0% | |
| AATAAGCGTTTAGCGTAGAT+TGG | + | Chr3:81875548-81875567 | None:intergenic | 35.0% | |
| ACTTCTCTATCAAAACAAGG+TGG | + | Chr3:81876049-81876068 | None:intergenic | 35.0% | |
| AGGTCTTCCAAATCCAAAAT+CGG | + | Chr3:81876668-81876687 | None:intergenic | 35.0% | |
| AGTTTATGTTCTGCTCCTAT+AGG | + | Chr3:81875440-81875459 | None:intergenic | 35.0% | |
| ATAAGATTCTCAAGTCCTCT+TGG | + | Chr3:81876082-81876101 | None:intergenic | 35.0% | |
| ATGAAGAGAAAGGACATGAA+GGG | - | Chr3:81876475-81876494 | MsG0380016316.01.T02:CDS | 35.0% | |
| CATTACATATTGTCACGTGA+TGG | - | Chr3:81875946-81875965 | MsG0380016316.01.T02:CDS | 35.0% | |
| GAAAGAGATTGTTTGAGAGA+TGG | + | Chr3:81875620-81875639 | None:intergenic | 35.0% | |
| GCAATGCATAGAAATGATGA+CGG | - | Chr3:81876343-81876362 | MsG0380016316.01.T02:CDS | 35.0% | |
| TAAGATTCTCAAGTCCTCTT+GGG | + | Chr3:81876081-81876100 | None:intergenic | 35.0% | |
| TCTCTTCTCTCATTCAACAA+GGG | - | Chr3:81876800-81876819 | MsG0380016316.01.T02:CDS | 35.0% | |
| TTCTCTTCTCTCATTCAACA+AGG | - | Chr3:81876799-81876818 | MsG0380016316.01.T02:CDS | 35.0% | |
| ! | CAAAAATGGTTGGTTGAATG+AGG | + | Chr3:81875584-81875603 | None:intergenic | 35.0% |
| !! | AAAAATGGGTGCTGAATCAA+TGG | - | Chr3:81876233-81876252 | MsG0380016316.01.T02:CDS | 35.0% |
| !! | GGAAATCAATTGTTTCTGCA+TGG | - | Chr3:81876616-81876635 | MsG0380016316.01.T02:CDS | 35.0% |
| !! | TATGAGACCGATTTTGGATT+TGG | - | Chr3:81876658-81876677 | MsG0380016316.01.T02:CDS | 35.0% |
| !! | TCTTGGTCTTTTATCCATCA+AGG | - | Chr3:81875998-81876017 | MsG0380016316.01.T02:CDS | 35.0% |
| !!! | ATTTTTCAGGTGGTGTTTGT+TGG | + | Chr3:81875783-81875802 | None:intergenic | 35.0% |
| !!! | TGCTTTTATTTGGGCTAGTA+TGG | - | Chr3:81876315-81876334 | MsG0380016316.01.T02:CDS | 35.0% |
| AAATGAGATTTCCAGCGAGA+GGG | + | Chr3:81875664-81875683 | None:intergenic | 40.0% | |
| AAGTGCAACGATGAAGAGAA+AGG | - | Chr3:81876465-81876484 | MsG0380016316.01.T02:CDS | 40.0% | |
| ATCTTGCGATGATTCGATGA+TGG | + | Chr3:81875747-81875766 | None:intergenic | 40.0% | |
| CAGTCTTCTACATCTTTACG+AGG | + | Chr3:81876565-81876584 | None:intergenic | 40.0% | |
| CTCGTAAAGATGTAGAAGAC+TGG | - | Chr3:81876563-81876582 | MsG0380016316.01.T02:CDS | 40.0% | |
| GATGAAGAGAAAGGACATGA+AGG | - | Chr3:81876474-81876493 | MsG0380016316.01.T02:CDS | 40.0% | |
| GTCTCAATATTTCCCAACCA+TGG | - | Chr3:81875911-81875930 | MsG0380016316.01.T02:CDS | 40.0% | |
| TGCACCATCTCAACTTTAAC+AGG | + | Chr3:81876688-81876707 | None:intergenic | 40.0% | |
| TGTGATTGCAGAGATAGACT+TGG | - | Chr3:81876397-81876416 | MsG0380016316.01.T02:CDS | 40.0% | |
| TTGCAAAGCCAACAATGGAA+GGG | + | Chr3:81875891-81875910 | None:intergenic | 40.0% | |
| ! | ACATATTGTCACGTGATGGA+TGG | - | Chr3:81875950-81875969 | MsG0380016316.01.T02:CDS | 40.0% |
| ! | ATGAAAGGTTTTTGTGGTGG+TGG | + | Chr3:81875692-81875711 | None:intergenic | 40.0% |
| ! | CAGCGAATGAAAGGTTTTTG+TGG | + | Chr3:81875698-81875717 | None:intergenic | 40.0% |
| ! | CGAATGAAAGGTTTTTGTGG+TGG | + | Chr3:81875695-81875714 | None:intergenic | 40.0% |
| ! | CGATGATTCGATGATGGTAA+AGG | + | Chr3:81875741-81875760 | None:intergenic | 40.0% |
| ! | GTTGTTGTTGTTCTTGTTGC+AGG | + | Chr3:81875485-81875504 | None:intergenic | 40.0% |
| ! | TGGTCTTTTATCCATCAAGG+AGG | - | Chr3:81876001-81876020 | MsG0380016316.01.T02:CDS | 40.0% |
| ! | TGGTTGGTTGAATGAGGAAA+AGG | + | Chr3:81875578-81875597 | None:intergenic | 40.0% |
| ! | TTCGATGATGGTAAAGGTGA+CGG | + | Chr3:81875735-81875754 | None:intergenic | 40.0% |
| !! | TGGGTTGGTACTTAAAAGTG+AGG | - | Chr3:81876765-81876784 | MsG0380016316.01.T02:CDS | 40.0% |
| !!! | TCAATACCAGAGGGGTATTT+TGG | - | Chr3:81876424-81876443 | MsG0380016316.01.T02:CDS | 40.0% |
| ACTTGGCTACTCAATACCAG+AGG | - | Chr3:81876414-81876433 | MsG0380016316.01.T02:CDS | 45.0% | |
| CACATTCACCCTTCCATTGT+TGG | - | Chr3:81875880-81875899 | MsG0380016316.01.T02:CDS | 45.0% | |
| CAGTTTCCAAAATACCCCTC+TGG | + | Chr3:81876433-81876452 | None:intergenic | 45.0% | |
| CTTGCAAAGCCAACAATGGA+AGG | + | Chr3:81875892-81875911 | None:intergenic | 45.0% | |
| CTTGGCTACTCAATACCAGA+GGG | - | Chr3:81876415-81876434 | MsG0380016316.01.T02:CDS | 45.0% | |
| GAAATGAGATTTCCAGCGAG+AGG | + | Chr3:81875665-81875684 | None:intergenic | 45.0% | |
| GAGACTTGCAAAGCCAACAA+TGG | + | Chr3:81875896-81875915 | None:intergenic | 45.0% | |
| GAGATGGTGCATGCGTTTAA+GGG | - | Chr3:81876697-81876716 | MsG0380016316.01.T02:CDS | 45.0% | |
| GTTGCTCAAAGTCAAAGCAC+TGG | - | Chr3:81876148-81876167 | MsG0380016316.01.T02:CDS | 45.0% | |
| TAATGCCAACGCAAACACCA+TGG | + | Chr3:81875931-81875950 | None:intergenic | 45.0% | |
| TCTCTTGCTGAAAGTGGAGA+TGG | - | Chr3:81876724-81876743 | MsG0380016316.01.T02:CDS | 45.0% | |
| TGAGATGGTGCATGCGTTTA+AGG | - | Chr3:81876696-81876715 | MsG0380016316.01.T02:CDS | 45.0% | |
| TTGGCTACTCAATACCAGAG+GGG | - | Chr3:81876416-81876435 | MsG0380016316.01.T02:CDS | 45.0% | |
| ! | GAGAAGGTGGACTTGAGTTT+GGG | - | Chr3:81876746-81876765 | MsG0380016316.01.T02:CDS | 45.0% |
| !! | AAAGGTGACGGAGTCTTCTT+CGG | + | Chr3:81875723-81875742 | None:intergenic | 45.0% |
| !! | TTCCTCGACTTGCATTTTGC+TGG | - | Chr3:81875521-81875540 | MsG0380016316.01.T02:CDS | 45.0% |
| !!! | AAAGGTTTTTGTGGTGGTGG+TGG | + | Chr3:81875689-81875708 | None:intergenic | 45.0% |
| CAGCTACATCACCTCCTTGA+TGG | + | Chr3:81876015-81876034 | None:intergenic | 50.0% | |
| CATCATTTCTTCCCTCTCGC+TGG | - | Chr3:81875650-81875669 | MsG0380016316.01.T02:CDS | 50.0% | |
| CCAACGCAAACACCATGGTT+GGG | + | Chr3:81875926-81875945 | None:intergenic | 50.0% | |
| GAAAGTGGAGATGGAGAAGG+TGG | - | Chr3:81876733-81876752 | MsG0380016316.01.T02:CDS | 50.0% | |
| GACCAGCAAAATGCAAGTCG+AGG | + | Chr3:81875526-81875545 | None:intergenic | 50.0% | |
| GCTGAAAGTGGAGATGGAGA+AGG | - | Chr3:81876730-81876749 | MsG0380016316.01.T02:CDS | 50.0% | |
| GGTGTGTCTCTTGCTGAAAG+TGG | - | Chr3:81876718-81876737 | MsG0380016316.01.T02:CDS | 50.0% | |
| TGCAAGTCGAGGAATGTGAG+AGG | + | Chr3:81875515-81875534 | None:intergenic | 50.0% | |
| ! | AGGTGGACTTGAGTTTGGGT+TGG | - | Chr3:81876750-81876769 | MsG0380016316.01.T02:CDS | 50.0% |
| ! | GGAGAAGGTGGACTTGAGTT+TGG | - | Chr3:81876745-81876764 | MsG0380016316.01.T02:CDS | 50.0% |
| ! | GGTGGTGTTTGTTGGAGAGA+TGG | + | Chr3:81875775-81875794 | None:intergenic | 50.0% |
| ! | TCTTCGGTGCAGCGAATGAA+AGG | + | Chr3:81875707-81875726 | None:intergenic | 50.0% |
| !!! | GAAGTTTTGAGGGACCCAAG+AGG | - | Chr3:81876064-81876083 | MsG0380016316.01.T02:CDS | 50.0% |
| CCCAACCATGGTGTTTGCGT+TGG | - | Chr3:81875923-81875942 | MsG0380016316.01.T02:CDS | 55.0% | |
| GCCAACGCAAACACCATGGT+TGG | + | Chr3:81875927-81875946 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 81875428 | 81876843 | 81875428 | ID=MsG0380016316.01;Name=MsG0380016316.01 |
| Chr3 | mRNA | 81875428 | 81876843 | 81875428 | ID=MsG0380016316.01.T01;Parent=MsG0380016316.01;Name=MsG0380016316.01.T01;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|0|0|2|0|444 |
| Chr3 | exon | 81875428 | 81875588 | 81875428 | ID=MsG0380016316.01.T01:exon:10828;Parent=MsG0380016316.01.T01 |
| Chr3 | exon | 81875670 | 81876843 | 81875670 | ID=MsG0380016316.01.T01:exon:10827;Parent=MsG0380016316.01.T01 |
| Chr3 | CDS | 81875670 | 81876843 | 81875670 | ID=MsG0380016316.01.T01:cds;Parent=MsG0380016316.01.T01 |
| Chr3 | CDS | 81875428 | 81875588 | 81875428 | ID=MsG0380016316.01.T01:cds;Parent=MsG0380016316.01.T01 |
| Chr3 | mRNA | 81875428 | 81876843 | 81875428 | ID=MsG0380016316.01.T02;Parent=MsG0380016316.01;Name=MsG0380016316.01.T02;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|471 |
| Chr3 | exon | 81875428 | 81876843 | 81875428 | ID=MsG0380016316.01.T02:exon:10829;Parent=MsG0380016316.01.T02 |
| Chr3 | CDS | 81875428 | 81876843 | 81875428 | ID=MsG0380016316.01.T02:cds;Parent=MsG0380016316.01.T02 |
| Gene Sequence |
| Protein sequence |
