Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016866.01.T01 | MCH82585.1 | 70.166 | 362 | 65 | 2 | 22 | 340 | 1 | 362 | 1.41E-176 | 504 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016866.01.T01 | Q39134 | 57.037 | 270 | 96 | 2 | 93 | 342 | 207 | 476 | 4.80E-103 | 314 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016866.01.T01 | A0A2K3NM30 | 70.455 | 352 | 61 | 2 | 2 | 310 | 17 | 368 | 1.95e-176 | 507 |
| MsG0380016866.01.T01 | A0A392M5H7 | 70.166 | 362 | 65 | 2 | 22 | 340 | 1 | 362 | 6.72e-177 | 504 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380013883.01 | MsG0380016866.01 | 0.802025 | 6.821305e-49 | 3.306435e-46 |
| MsG0380016866.01 | MsG0380017822.01 | 0.812087 | 5.057298e-51 | 3.185195e-48 |
| MsG0380016866.01 | MsG0580026040.01 | 0.802433 | 5.622553e-49 | 2.753957e-46 |
| MsG0380016866.01 | MsG0580027332.01 | 0.818235 | 2.178469e-52 | 1.621478e-49 |
| MsG0380016866.01 | MsG0580029381.01 | 0.807263 | 5.504680e-50 | 3.052205e-47 |
| MsG0380016866.01 | MsG0880044644.01 | 0.809799 | 1.582409e-50 | 9.380583e-48 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016866.01.T01 | MTR_3g096800 | 86.517 | 267 | 19 | 1 | 93 | 342 | 211 | 477 | 2.63e-162 | 462 |
| MsG0380016866.01.T01 | MTR_3g096800 | 94.845 | 97 | 5 | 0 | 2 | 98 | 17 | 113 | 4.11e-59 | 197 |
| MsG0380016866.01.T01 | MTR_8g094290 | 57.895 | 266 | 95 | 1 | 94 | 342 | 210 | 475 | 5.36e-111 | 332 |
| MsG0380016866.01.T01 | MTR_8g094290 | 75.510 | 98 | 22 | 1 | 12 | 109 | 25 | 120 | 3.47e-40 | 147 |
| MsG0380016866.01.T01 | MTR_3g096830 | 63.004 | 273 | 79 | 3 | 87 | 339 | 195 | 465 | 2.10e-107 | 322 |
| MsG0380016866.01.T01 | MTR_3g096830 | 70.370 | 108 | 30 | 1 | 2 | 109 | 10 | 115 | 2.12e-43 | 156 |
| MsG0380016866.01.T01 | MTR_3g088455 | 65.909 | 220 | 72 | 1 | 126 | 342 | 260 | 479 | 6.47e-107 | 321 |
| MsG0380016866.01.T01 | MTR_3g088455 | 64.815 | 108 | 36 | 1 | 2 | 109 | 18 | 123 | 9.64e-41 | 149 |
| MsG0380016866.01.T01 | MTR_3g096840 | 59.470 | 264 | 90 | 1 | 93 | 339 | 217 | 480 | 9.19e-106 | 318 |
| MsG0380016866.01.T01 | MTR_3g096840 | 70.408 | 98 | 29 | 0 | 7 | 104 | 28 | 125 | 2.07e-41 | 150 |
| MsG0380016866.01.T01 | MTR_4g073520 | 52.899 | 276 | 104 | 3 | 93 | 342 | 237 | 512 | 7.42e-102 | 309 |
| MsG0380016866.01.T01 | MTR_4g073520 | 66.019 | 103 | 32 | 1 | 5 | 104 | 43 | 145 | 1.77e-38 | 143 |
| MsG0380016866.01.T01 | MTR_4g073520 | 52.899 | 276 | 104 | 3 | 93 | 342 | 237 | 512 | 9.31e-102 | 309 |
| MsG0380016866.01.T01 | MTR_4g073520 | 66.019 | 103 | 32 | 1 | 5 | 104 | 43 | 145 | 1.37e-38 | 144 |
| MsG0380016866.01.T01 | MTR_3g088475 | 63.801 | 221 | 76 | 2 | 126 | 342 | 260 | 480 | 2.40e-100 | 304 |
| MsG0380016866.01.T01 | MTR_3g088475 | 63.889 | 108 | 37 | 1 | 2 | 109 | 18 | 123 | 1.43e-40 | 148 |
| MsG0380016866.01.T01 | MTR_1g029750 | 54.244 | 271 | 103 | 3 | 93 | 342 | 213 | 483 | 5.20e-95 | 291 |
| MsG0380016866.01.T01 | MTR_1g029750 | 67.677 | 99 | 30 | 1 | 11 | 109 | 28 | 124 | 1.08e-36 | 138 |
| MsG0380016866.01.T01 | MTR_1g105980 | 52.968 | 219 | 100 | 1 | 126 | 341 | 252 | 470 | 4.46e-81 | 254 |
| MsG0380016866.01.T01 | MTR_1g105980 | 61.000 | 100 | 39 | 0 | 5 | 104 | 9 | 108 | 5.05e-34 | 130 |
| MsG0380016866.01.T01 | MTR_1g105995 | 50.691 | 217 | 104 | 1 | 126 | 339 | 251 | 467 | 2.37e-80 | 253 |
| MsG0380016866.01.T01 | MTR_1g105995 | 62.766 | 94 | 35 | 0 | 5 | 98 | 8 | 101 | 7.20e-30 | 119 |
| MsG0380016866.01.T01 | MTR_1g007380 | 49.772 | 219 | 107 | 1 | 126 | 341 | 253 | 471 | 2.29e-79 | 250 |
| MsG0380016866.01.T01 | MTR_1g007380 | 60.577 | 104 | 39 | 1 | 3 | 104 | 6 | 109 | 4.42e-35 | 133 |
| MsG0380016866.01.T01 | MTR_3g110660 | 48.858 | 219 | 109 | 1 | 126 | 341 | 263 | 481 | 2.05e-78 | 248 |
| MsG0380016866.01.T01 | MTR_3g110660 | 64.894 | 94 | 33 | 0 | 11 | 104 | 26 | 119 | 2.36e-34 | 131 |
| MsG0380016866.01.T01 | MTR_1g106000 | 48.198 | 222 | 112 | 1 | 123 | 341 | 251 | 472 | 4.57e-78 | 247 |
| MsG0380016866.01.T01 | MTR_1g106000 | 56.322 | 87 | 38 | 0 | 18 | 104 | 15 | 101 | 7.41e-26 | 107 |
| MsG0380016866.01.T01 | MTR_1g105990 | 53.365 | 208 | 94 | 1 | 129 | 333 | 257 | 464 | 4.17e-77 | 244 |
| MsG0380016866.01.T01 | MTR_1g105990 | 59.000 | 100 | 41 | 0 | 5 | 104 | 8 | 107 | 5.70e-33 | 127 |
| MsG0380016866.01.T01 | MTR_3g061390 | 39.604 | 303 | 159 | 5 | 53 | 331 | 155 | 457 | 3.00e-74 | 236 |
| MsG0380016866.01.T01 | MTR_3g061390 | 61.176 | 85 | 33 | 0 | 11 | 95 | 16 | 100 | 2.67e-28 | 114 |
| MsG0380016866.01.T01 | MTR_5g096840 | 38.066 | 331 | 178 | 7 | 26 | 331 | 136 | 464 | 1.12e-73 | 235 |
| MsG0380016866.01.T01 | MTR_5g096840 | 49.462 | 93 | 44 | 2 | 18 | 109 | 29 | 119 | 1.40e-22 | 98.6 |
| MsG0380016866.01.T01 | MTR_3g461440 | 41.353 | 266 | 135 | 4 | 87 | 331 | 55 | 320 | 1.83e-73 | 230 |
| MsG0380016866.01.T01 | MTR_3g461470 | 39.604 | 303 | 159 | 5 | 53 | 331 | 155 | 457 | 5.59e-73 | 233 |
| MsG0380016866.01.T01 | MTR_3g461470 | 58.889 | 90 | 37 | 0 | 11 | 100 | 16 | 105 | 1.89e-28 | 115 |
| MsG0380016866.01.T01 | MTR_3g461440 | 41.353 | 266 | 135 | 4 | 87 | 331 | 192 | 457 | 2.37e-72 | 232 |
| MsG0380016866.01.T01 | MTR_3g461440 | 58.889 | 90 | 37 | 0 | 11 | 100 | 16 | 105 | 1.61e-28 | 115 |
| MsG0380016866.01.T01 | MTR_3g110420 | 47.926 | 217 | 109 | 2 | 125 | 338 | 252 | 467 | 6.97e-72 | 231 |
| MsG0380016866.01.T01 | MTR_3g110420 | 57.778 | 90 | 38 | 0 | 9 | 98 | 15 | 104 | 5.98e-29 | 116 |
| MsG0380016866.01.T01 | MTR_3g461430 | 40.684 | 263 | 135 | 4 | 87 | 328 | 199 | 461 | 8.07e-69 | 224 |
| MsG0380016866.01.T01 | MTR_3g461430 | 59.302 | 86 | 35 | 0 | 15 | 100 | 27 | 112 | 1.90e-25 | 107 |
| MsG0380016866.01.T01 | MTR_2g031750 | 45.413 | 218 | 113 | 3 | 125 | 339 | 173 | 387 | 6.51e-65 | 210 |
| MsG0380016866.01.T01 | MTR_2g031750 | 45.413 | 218 | 113 | 3 | 125 | 339 | 240 | 454 | 2.34e-64 | 211 |
| MsG0380016866.01.T01 | MTR_2g031750 | 55.556 | 90 | 39 | 1 | 6 | 95 | 1 | 89 | 2.59e-28 | 114 |
| MsG0380016866.01.T01 | MTR_3g461480 | 41.887 | 265 | 133 | 4 | 87 | 330 | 197 | 461 | 5.03e-64 | 210 |
| MsG0380016866.01.T01 | MTR_3g461480 | 50.476 | 105 | 49 | 2 | 6 | 109 | 15 | 117 | 1.15e-24 | 104 |
| MsG0380016866.01.T01 | MTR_1g007180 | 44.037 | 218 | 116 | 3 | 125 | 339 | 156 | 370 | 7.46e-64 | 207 |
| MsG0380016866.01.T01 | MTR_1g007180 | 44.037 | 218 | 116 | 3 | 125 | 339 | 240 | 454 | 1.10e-63 | 209 |
| MsG0380016866.01.T01 | MTR_1g007180 | 53.763 | 93 | 42 | 1 | 12 | 104 | 6 | 97 | 2.94e-28 | 114 |
| MsG0380016866.01.T01 | MTR_1g007270 | 45.070 | 213 | 109 | 2 | 129 | 338 | 262 | 469 | 2.52e-62 | 206 |
| MsG0380016866.01.T01 | MTR_1g007270 | 50.000 | 122 | 54 | 2 | 7 | 122 | 22 | 142 | 7.80e-30 | 119 |
| MsG0380016866.01.T01 | MTR_1g007240 | 44.954 | 218 | 114 | 3 | 125 | 339 | 240 | 454 | 4.93e-62 | 205 |
| MsG0380016866.01.T01 | MTR_1g007240 | 59.770 | 87 | 35 | 0 | 12 | 98 | 6 | 92 | 1.81e-30 | 120 |
| MsG0380016866.01.T01 | MTR_3g110430 | 46.698 | 212 | 111 | 2 | 129 | 338 | 291 | 502 | 1.36e-61 | 205 |
| MsG0380016866.01.T01 | MTR_3g110430 | 54.023 | 87 | 38 | 1 | 14 | 98 | 55 | 141 | 4.62e-22 | 97.4 |
| MsG0380016866.01.T01 | MTR_5g096850 | 38.521 | 257 | 140 | 4 | 93 | 331 | 204 | 460 | 5.30e-57 | 192 |
| MsG0380016866.01.T01 | MTR_5g096850 | 50.538 | 93 | 43 | 2 | 18 | 109 | 25 | 115 | 8.82e-19 | 87.4 |
| MsG0380016866.01.T01 | MTR_3g088465 | 50.286 | 175 | 64 | 4 | 93 | 246 | 212 | 384 | 6.92e-48 | 166 |
| MsG0380016866.01.T01 | MTR_3g088465 | 65.741 | 108 | 35 | 1 | 2 | 109 | 18 | 123 | 1.40e-41 | 150 |
| MsG0380016866.01.T01 | MTR_3g110660 | 64.894 | 94 | 33 | 0 | 11 | 104 | 26 | 119 | 5.47e-35 | 132 |
| MsG0380016866.01.T01 | MTR_3g110660 | 58.750 | 80 | 33 | 0 | 126 | 205 | 263 | 342 | 1.18e-26 | 108 |
| MsG0380016866.01.T01 | MTR_3g110420 | 57.778 | 90 | 38 | 0 | 9 | 98 | 15 | 104 | 1.18e-29 | 116 |
| MsG0380016866.01.T01 | MTR_3g110420 | 48.148 | 81 | 42 | 0 | 125 | 205 | 252 | 332 | 3.41e-21 | 93.2 |
| MsG0380016866.01.T01 | MTR_5g017200 | 65.306 | 98 | 23 | 3 | 12 | 109 | 26 | 112 | 7.59e-29 | 112 |
| MsG0380016866.01.T01 | MTR_1g070470 | 29.032 | 217 | 136 | 6 | 126 | 338 | 235 | 437 | 2.83e-23 | 100 |
| MsG0380016866.01.T01 | MTR_6g022790 | 31.220 | 205 | 124 | 4 | 135 | 339 | 268 | 455 | 1.65e-21 | 95.5 |
| MsG0380016866.01.T01 | MTR_8g080120 | 33.816 | 207 | 116 | 6 | 135 | 339 | 249 | 436 | 3.82e-21 | 94.0 |
| MsG0380016866.01.T01 | MTR_2g101920 | 34.091 | 176 | 98 | 4 | 130 | 303 | 266 | 425 | 5.47e-19 | 87.8 |
| MsG0380016866.01.T01 | MTR_1g007190 | 46.535 | 101 | 47 | 2 | 28 | 122 | 20 | 119 | 2.79e-18 | 82.4 |
| MsG0380016866.01.T01 | MTR_4g103890 | 31.100 | 209 | 113 | 8 | 135 | 336 | 236 | 420 | 2.41e-16 | 80.1 |
| MsG0380016866.01.T01 | MTR_8g099320 | 30.233 | 215 | 131 | 7 | 133 | 341 | 249 | 450 | 4.27e-16 | 79.3 |
| MsG0380016866.01.T01 | MTR_5g054730 | 34.158 | 202 | 116 | 5 | 135 | 336 | 252 | 436 | 1.81e-15 | 77.4 |
| MsG0380016866.01.T01 | MTR_6g022780 | 29.961 | 257 | 153 | 6 | 95 | 339 | 187 | 428 | 2.50e-15 | 77.0 |
| MsG0380016866.01.T01 | MTR_6g023075 | 30.350 | 257 | 152 | 6 | 95 | 339 | 187 | 428 | 3.96e-15 | 76.3 |
| MsG0380016866.01.T01 | MTR_4g055610 | 27.530 | 247 | 149 | 6 | 110 | 340 | 229 | 461 | 7.74e-15 | 75.5 |
| MsG0380016866.01.T01 | MTR_2g096830 | 26.645 | 304 | 179 | 7 | 63 | 339 | 142 | 428 | 3.09e-14 | 73.6 |
| MsG0380016866.01.T01 | MTR_3g115090 | 27.723 | 202 | 117 | 7 | 142 | 329 | 313 | 499 | 4.10e-14 | 73.6 |
| MsG0380016866.01.T01 | MTR_1g093020 | 32.673 | 202 | 119 | 5 | 135 | 336 | 250 | 434 | 4.19e-13 | 70.1 |
| MsG0380016866.01.T01 | MTR_1g093020 | 35.088 | 171 | 94 | 5 | 135 | 305 | 250 | 403 | 2.96e-12 | 67.8 |
| MsG0380016866.01.T01 | MTR_6g023065 | 29.493 | 217 | 135 | 4 | 125 | 339 | 263 | 463 | 3.56e-12 | 67.4 |
| MsG0380016866.01.T01 | MTR_5g081630 | 25.882 | 255 | 165 | 7 | 92 | 339 | 144 | 381 | 1.07e-11 | 65.9 |
| MsG0380016866.01.T01 | MTR_7g038910 | 29.245 | 212 | 132 | 4 | 130 | 339 | 248 | 443 | 4.17e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0380016866.01.T01 | AT1G77380 | 57.037 | 270 | 96 | 2 | 93 | 342 | 207 | 476 | 4.89e-104 | 314 |
| MsG0380016866.01.T01 | AT1G77380 | 66.667 | 108 | 34 | 1 | 2 | 109 | 13 | 118 | 4.60e-41 | 150 |
| MsG0380016866.01.T01 | AT5G09220 | 54.613 | 271 | 102 | 3 | 93 | 342 | 223 | 493 | 3.66e-103 | 312 |
| MsG0380016866.01.T01 | AT5G09220 | 70.874 | 103 | 30 | 0 | 2 | 104 | 29 | 131 | 2.59e-42 | 153 |
| MsG0380016866.01.T01 | AT5G63850 | 55.224 | 268 | 99 | 3 | 96 | 342 | 199 | 466 | 1.30e-102 | 310 |
| MsG0380016866.01.T01 | AT5G63850 | 72.340 | 94 | 26 | 0 | 11 | 104 | 11 | 104 | 1.39e-40 | 148 |
| MsG0380016866.01.T01 | AT1G44100 | 52.899 | 276 | 104 | 4 | 93 | 342 | 205 | 480 | 1.17e-98 | 300 |
| MsG0380016866.01.T01 | AT1G44100 | 72.222 | 90 | 25 | 0 | 9 | 98 | 18 | 107 | 1.37e-39 | 146 |
| MsG0380016866.01.T01 | AT5G49630 | 55.708 | 219 | 93 | 2 | 126 | 340 | 262 | 480 | 2.65e-85 | 266 |
| MsG0380016866.01.T01 | AT5G49630 | 68.182 | 88 | 28 | 0 | 11 | 98 | 25 | 112 | 3.20e-33 | 128 |
| MsG0380016866.01.T01 | AT1G10010 | 53.211 | 218 | 99 | 1 | 126 | 340 | 257 | 474 | 5.22e-83 | 259 |
| MsG0380016866.01.T01 | AT1G10010 | 63.218 | 87 | 32 | 0 | 12 | 98 | 22 | 108 | 1.46e-31 | 124 |
| MsG0380016866.01.T01 | AT1G10010 | 53.211 | 218 | 99 | 1 | 126 | 340 | 256 | 473 | 5.25e-83 | 259 |
| MsG0380016866.01.T01 | AT1G10010 | 63.218 | 87 | 32 | 0 | 12 | 98 | 21 | 107 | 1.52e-31 | 124 |
| MsG0380016866.01.T01 | AT1G58360 | 51.364 | 220 | 104 | 1 | 126 | 342 | 265 | 484 | 6.91e-82 | 257 |
| MsG0380016866.01.T01 | AT1G58360 | 65.591 | 93 | 31 | 1 | 7 | 98 | 24 | 116 | 5.20e-33 | 128 |
| MsG0380016866.01.T01 | AT5G23810 | 42.000 | 250 | 110 | 4 | 87 | 307 | 197 | 440 | 9.51e-56 | 189 |
| MsG0380016866.01.T01 | AT5G23810 | 50.000 | 96 | 43 | 2 | 1 | 95 | 12 | 103 | 1.84e-20 | 92.4 |
| MsG0380016866.01.T01 | AT5G23810 | 50.000 | 96 | 43 | 2 | 1 | 95 | 12 | 103 | 1.05e-21 | 92.4 |
| MsG0380016866.01.T01 | AT5G23810 | 50.000 | 96 | 43 | 2 | 1 | 95 | 12 | 103 | 1.05e-21 | 92.4 |
| MsG0380016866.01.T01 | AT5G23810 | 39.865 | 148 | 59 | 3 | 87 | 210 | 197 | 338 | 1.80e-21 | 94.4 |
| MsG0380016866.01.T01 | AT5G23810 | 50.000 | 96 | 43 | 2 | 1 | 95 | 12 | 103 | 6.06e-21 | 92.8 |
| MsG0380016866.01.T01 | AT5G23810 | 50.000 | 96 | 43 | 2 | 1 | 95 | 12 | 103 | 1.91e-21 | 92.8 |
| MsG0380016866.01.T01 | AT1G48640 | 30.435 | 184 | 112 | 3 | 156 | 339 | 286 | 453 | 8.35e-20 | 90.5 |
| MsG0380016866.01.T01 | AT5G40780 | 30.660 | 212 | 129 | 4 | 130 | 339 | 203 | 398 | 8.65e-19 | 87.0 |
| MsG0380016866.01.T01 | AT5G40780 | 30.660 | 212 | 129 | 4 | 130 | 339 | 203 | 398 | 8.65e-19 | 87.0 |
| MsG0380016866.01.T01 | AT5G40780 | 30.660 | 212 | 129 | 4 | 130 | 339 | 251 | 446 | 1.13e-18 | 87.0 |
| MsG0380016866.01.T01 | AT1G08230 | 31.624 | 234 | 137 | 6 | 115 | 340 | 113 | 331 | 9.83e-18 | 83.2 |
| MsG0380016866.01.T01 | AT1G08230 | 31.624 | 234 | 137 | 6 | 115 | 340 | 113 | 331 | 9.83e-18 | 83.2 |
| MsG0380016866.01.T01 | AT1G08230 | 31.624 | 234 | 137 | 6 | 115 | 340 | 113 | 331 | 9.83e-18 | 83.2 |
| MsG0380016866.01.T01 | AT1G08230 | 31.624 | 234 | 137 | 6 | 115 | 340 | 232 | 450 | 1.14e-17 | 84.0 |
| MsG0380016866.01.T01 | AT1G08230 | 31.624 | 234 | 137 | 6 | 115 | 340 | 132 | 350 | 1.19e-17 | 83.2 |
| MsG0380016866.01.T01 | AT1G61270 | 28.019 | 207 | 131 | 4 | 130 | 334 | 253 | 443 | 4.84e-17 | 82.0 |
| MsG0380016866.01.T01 | AT1G67640 | 34.091 | 176 | 100 | 3 | 164 | 339 | 282 | 441 | 1.97e-16 | 80.5 |
| MsG0380016866.01.T01 | AT3G01760 | 26.214 | 206 | 134 | 4 | 130 | 333 | 252 | 441 | 1.97e-15 | 77.4 |
| MsG0380016866.01.T01 | AT1G24400 | 30.000 | 210 | 120 | 7 | 135 | 339 | 254 | 441 | 2.62e-14 | 73.9 |
| MsG0380016866.01.T01 | AT1G25530 | 28.218 | 202 | 128 | 4 | 135 | 336 | 253 | 437 | 4.15e-12 | 67.4 |
| MsG0380016866.01.T01 | AT5G41800 | 26.168 | 214 | 141 | 4 | 133 | 341 | 248 | 449 | 9.47e-12 | 66.2 |
| MsG0380016866.01.T01 | AT1G71680 | 30.435 | 184 | 112 | 3 | 156 | 339 | 281 | 448 | 7.66e-11 | 63.5 |
Find 101 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCATTTAGAACTCCATTT+TGG | 0.108522 | 3:+88781115 | None:intergenic |
| TCCTTTCTTTAATGATGTTC+TGG | 0.137749 | 3:-88781215 | MsG0380016866.01.T01:CDS |
| TTTATATTCTCTCAATTATT+TGG | 0.156492 | 3:-88783952 | MsG0380016866.01.T01:five_prime_UTR |
| TTCTTGGAGCAGTGGGATTT+TGG | 0.180772 | 3:-88781189 | MsG0380016866.01.T01:CDS |
| AATGATGTTCTGGGATTTCT+TGG | 0.212555 | 3:-88781205 | MsG0380016866.01.T01:CDS |
| ACTGGATAATAAACTGTTAA+AGG | 0.224075 | 3:+88781166 | None:intergenic |
| CCATCGTCGTCGAAGTATTC+AGG | 0.273974 | 3:+88783832 | None:intergenic |
| TAAATCTATTTAGATTAGTT+TGG | 0.281769 | 3:-88781282 | MsG0380016866.01.T01:CDS |
| CCTTTCTTTAATGATGTTCT+GGG | 0.306108 | 3:-88781214 | MsG0380016866.01.T01:CDS |
| TCCCAAAATGGAGTTCTAAA+TGG | 0.320619 | 3:-88781117 | MsG0380016866.01.T01:CDS |
| TGAATGGCTTGTAATGCTTT+AGG | 0.330057 | 3:+88781011 | None:intergenic |
| AGTTCTGAAGGGACCATCTA+TGG | 0.330089 | 3:+88783859 | None:intergenic |
| TCCAGCTTGGCTCATCGATT+TGG | 0.332874 | 3:-88781455 | MsG0380016866.01.T01:CDS |
| TCTTCTTTCAACATAATGTA+TGG | 0.336027 | 3:+88783905 | None:intergenic |
| AGCATGGGCTACGGCACAAT+TGG | 0.349061 | 3:-88783456 | MsG0380016866.01.T01:CDS |
| TAATGTGTACCTGTTCGTTT+AGG | 0.376426 | 3:+88783805 | None:intergenic |
| TGCATGGGCTATGCTGCATT+TGG | 0.377828 | 3:-88781523 | MsG0380016866.01.T01:CDS |
| CTAAATAGATTTAGATTGTA+AGG | 0.384304 | 3:+88781292 | None:intergenic |
| GATGCAGTTCGTAGCATTCT+TGG | 0.385053 | 3:-88783308 | MsG0380016866.01.T01:intron |
| CATATAATAACAGCTGTGAT+TGG | 0.385307 | 3:-88783497 | MsG0380016866.01.T01:CDS |
| GTATCAGTTGTGGCTGCTCT+TGG | 0.389248 | 3:-88781058 | MsG0380016866.01.T01:CDS |
| CTTTAGGTCCTCTATAATAC+TGG | 0.396377 | 3:+88781027 | None:intergenic |
| GGGTTGGATTGGTGGTCCTT+TGG | 0.399149 | 3:-88783435 | MsG0380016866.01.T01:CDS |
| ATAACAGCTGTGATTGGGTC+TGG | 0.401374 | 3:-88783491 | MsG0380016866.01.T01:CDS |
| TTTATGAGTCAGGAACAATA+TGG | 0.405471 | 3:-88783532 | MsG0380016866.01.T01:intron |
| CTGGGATTTCTTGGAGCAGT+GGG | 0.412618 | 3:-88781196 | MsG0380016866.01.T01:CDS |
| TGCAAAGGAAGATCCCAAAA+TGG | 0.417168 | 3:-88781129 | MsG0380016866.01.T01:CDS |
| CAAATGAGAAAAGCTGTTGC+GGG | 0.421610 | 3:-88780939 | MsG0380016866.01.T01:three_prime_UTR |
| ACAAAGTGACGAGGCTGAAA+AGG | 0.428865 | 3:+88783405 | None:intergenic |
| TTATTTGCTTTGTGGCTGCA+TGG | 0.440989 | 3:-88781539 | MsG0380016866.01.T01:CDS |
| ACCTTCAAGGGTACTCTCAC+TGG | 0.442148 | 3:-88781848 | MsG0380016866.01.T01:CDS |
| AACAGAAAATGGTACCTTCA+AGG | 0.444400 | 3:-88781861 | MsG0380016866.01.T01:intron |
| AACCGGAGCCATTCCATAGA+TGG | 0.450492 | 3:-88783872 | MsG0380016866.01.T01:exon |
| CTGGGGTGCTATCCTTAGCA+TGG | 0.450709 | 3:-88783472 | MsG0380016866.01.T01:CDS |
| GTCTTTGCATTCGTAGAGAA+AGG | 0.456575 | 3:-88781376 | MsG0380016866.01.T01:CDS |
| AAGAAGAAATAGAAAGAAAC+CGG | 0.458125 | 3:-88783889 | MsG0380016866.01.T01:five_prime_UTR |
| ACATTGCAACAAAAGTAGTT+AGG | 0.463138 | 3:+88781242 | None:intergenic |
| GCATGGGCTACGGCACAATT+GGG | 0.465627 | 3:-88783455 | MsG0380016866.01.T01:CDS |
| TCCAGTGAGAGTACCCTTGA+AGG | 0.465923 | 3:+88781847 | None:intergenic |
| GCACAATTGGGTTGGATTGG+TGG | 0.466018 | 3:-88783443 | MsG0380016866.01.T01:CDS |
| TAAGGACGAAAACCCGGGAT+TGG | 0.471537 | 3:+88781310 | None:intergenic |
| GCCAAATCGATGAGCCAAGC+TGG | 0.477067 | 3:+88781454 | None:intergenic |
| TATTTGCTTTGTGGCTGCAT+GGG | 0.481138 | 3:-88781538 | MsG0380016866.01.T01:CDS |
| CTTCTTTCAACATAATGTAT+GGG | 0.486741 | 3:+88783906 | None:intergenic |
| TAGCTTCTCTTTCCATGCAC+AGG | 0.488301 | 3:+88783341 | None:intergenic |
| ATATAATAACAGCTGTGATT+GGG | 0.488499 | 3:-88783496 | MsG0380016866.01.T01:CDS |
| GGGCTACGGCACAATTGGGT+TGG | 0.489975 | 3:-88783451 | MsG0380016866.01.T01:CDS |
| GCCGTCGTAATCCACCTTGT+GGG | 0.501113 | 3:-88781424 | MsG0380016866.01.T01:CDS |
| CCCAGAACATCATTAAAGAA+AGG | 0.503059 | 3:+88781214 | None:intergenic |
| GCACCAGGGAACTTGCTCAC+TGG | 0.503377 | 3:-88781493 | MsG0380016866.01.T01:CDS |
| CTCAACCGCCAGTATTATAG+AGG | 0.511484 | 3:-88781035 | MsG0380016866.01.T01:CDS |
| ATGCTTTATTGTATCAGTTG+TGG | 0.512651 | 3:-88781068 | MsG0380016866.01.T01:CDS |
| GATGGTCGTCCTAAACGAAC+AGG | 0.514219 | 3:-88783814 | MsG0380016866.01.T01:intron |
| TAACAGCTGTGATTGGGTCT+GGG | 0.516920 | 3:-88783490 | MsG0380016866.01.T01:CDS |
| ACAGAAAATGGTACCTTCAA+GGG | 0.518566 | 3:-88781860 | MsG0380016866.01.T01:intron |
| AGAAAAGCTGTTGCGGGCAA+AGG | 0.522807 | 3:-88780933 | MsG0380016866.01.T01:three_prime_UTR |
| GATTGTAAGGACGAAAACCC+GGG | 0.523575 | 3:+88781305 | None:intergenic |
| GGAACACAAAATTCCAATCC+CGG | 0.528501 | 3:-88781323 | MsG0380016866.01.T01:CDS |
| GCATTTGGAGAACAAGCACC+AGG | 0.529176 | 3:-88781508 | MsG0380016866.01.T01:CDS |
| TGTCAACAACAACAAATTGT+GGG | 0.531879 | 3:-88781808 | MsG0380016866.01.T01:CDS |
| GTGTCAACAACAACAAATTG+TGG | 0.536311 | 3:-88781809 | MsG0380016866.01.T01:CDS |
| GACCATCTATGGAATGGCTC+CGG | 0.540080 | 3:+88783870 | None:intergenic |
| TTCTCTACGAATGCAAAGAC+AGG | 0.546335 | 3:+88781379 | None:intergenic |
| TGCCGTCGTAATCCACCTTG+TGG | 0.547983 | 3:-88781425 | MsG0380016866.01.T01:CDS |
| ATTGTATGTATTGTATATAG+AGG | 0.548116 | 3:-88780891 | MsG0380016866.01.T01:three_prime_UTR |
| ACGGCACAATTGGGTTGGAT+TGG | 0.551307 | 3:-88783446 | MsG0380016866.01.T01:CDS |
| GGCAGTAGATGTTGCTTGTG+AGG | 0.551471 | 3:+88780973 | None:intergenic |
| TATTCAGGATCAAGTTCTGA+AGG | 0.553591 | 3:+88783847 | None:intergenic |
| AAGATGGCCCCAAACAAAAG+TGG | 0.554048 | 3:-88781344 | MsG0380016866.01.T01:CDS |
| GCTCAATACTCTGAGCTGAA+TGG | 0.555896 | 3:+88780995 | None:intergenic |
| AGACAGGTTGAACATATACT+TGG | 0.557340 | 3:+88781395 | None:intergenic |
| AGATTGTAAGGACGAAAACC+CGG | 0.560505 | 3:+88781304 | None:intergenic |
| GCAAATGAGAAAAGCTGTTG+CGG | 0.564219 | 3:-88780940 | MsG0380016866.01.T01:three_prime_UTR |
| TTCTTTCAACATAATGTATG+GGG | 0.564598 | 3:+88783907 | None:intergenic |
| TCTGGGATTTCTTGGAGCAG+TGG | 0.566045 | 3:-88781197 | MsG0380016866.01.T01:CDS |
| AATCCAGTGAGCAAGTTCCC+TGG | 0.566335 | 3:+88781490 | None:intergenic |
| TTTAACAGTTTATTATCCAG+TGG | 0.568524 | 3:-88781164 | MsG0380016866.01.T01:CDS |
| TGCAAGATATACATCTCCAC+TGG | 0.575990 | 3:+88781148 | None:intergenic |
| TGGGGTGCTATCCTTAGCAT+GGG | 0.576138 | 3:-88783471 | MsG0380016866.01.T01:CDS |
| TTAGTATGTACAATCCAGCT+TGG | 0.584076 | 3:-88781468 | MsG0380016866.01.T01:CDS |
| AACAGCTGTGATTGGGTCTG+GGG | 0.588270 | 3:-88783489 | MsG0380016866.01.T01:CDS |
| TGAAGGGACCATCTATGGAA+TGG | 0.588791 | 3:+88783864 | None:intergenic |
| GAACACAAAATTCCAATCCC+GGG | 0.593016 | 3:-88781322 | MsG0380016866.01.T01:CDS |
| CCTGAATACTTCGACGACGA+TGG | 0.603286 | 3:-88783832 | MsG0380016866.01.T01:CDS |
| TTCTCATTTGCAAACAAAGG+AGG | 0.605608 | 3:+88780952 | None:intergenic |
| TTGTGCCGTAGCCCATGCTA+AGG | 0.606269 | 3:+88783460 | None:intergenic |
| TGGAGATGTATATCTTGCAA+AGG | 0.629124 | 3:-88781144 | MsG0380016866.01.T01:CDS |
| TAGGTCCTCTATAATACTGG+CGG | 0.635831 | 3:+88781030 | None:intergenic |
| CTAGCTGAATGTTATCGTTG+TGG | 0.636182 | 3:-88783368 | MsG0380016866.01.T01:CDS |
| GTTGCGGGCAAAGGTCGTTG+TGG | 0.637203 | 3:-88780924 | MsG0380016866.01.T01:three_prime_UTR |
| GTCAACAACAACAAATTGTG+GGG | 0.639219 | 3:-88781807 | MsG0380016866.01.T01:CDS |
| CGTTGTGGAGATCCTGTGCA+TGG | 0.641437 | 3:-88783353 | MsG0380016866.01.T01:CDS |
| ATTCAGGATCAAGTTCTGAA+GGG | 0.648974 | 3:+88783848 | None:intergenic |
| TTCAAGGGTACTCTCACTGG+AGG | 0.649496 | 3:-88781845 | MsG0380016866.01.T01:CDS |
| CTGAAAAGGATCATCACCAA+AGG | 0.653603 | 3:+88783419 | None:intergenic |
| GCTATCCTTAGCATGGGCTA+CGG | 0.662463 | 3:-88783465 | MsG0380016866.01.T01:CDS |
| CTTGGTATGCTCCCACAAGG+TGG | 0.675365 | 3:+88781413 | None:intergenic |
| ATACTTGGTATGCTCCCACA+AGG | 0.692310 | 3:+88781410 | None:intergenic |
| ATGAAGTATACAAAGTGACG+AGG | 0.719582 | 3:+88783396 | None:intergenic |
| TCCCACAAGGTGGATTACGA+CGG | 0.722373 | 3:+88781423 | None:intergenic |
| CATTTGGAGAACAAGCACCA+GGG | 0.723647 | 3:-88781507 | MsG0380016866.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAATTAATT+CGG | - | Chr3:88782870-88782889 | MsG0380016866.01.T01:intron | 0.0% |
| !! | AAAAAAAAAAAATTAATTCG+GGG | - | Chr3:88782872-88782891 | MsG0380016866.01.T01:intron | 10.0% |
| !! | AATTTAATTAAGATAAAGAA+AGG | + | Chr3:88783092-88783111 | None:intergenic | 10.0% |
| !! | ATTTAATTAAGATAAAGAAA+GGG | + | Chr3:88783091-88783110 | None:intergenic | 10.0% |
| !!! | TTTTTATGTCTAATTTTTAT+GGG | - | Chr3:88781191-88781210 | MsG0380016866.01.T01:CDS | 10.0% |
| !!! | TTTTTTATGTCTAATTTTTA+TGG | - | Chr3:88781190-88781209 | MsG0380016866.01.T01:CDS | 10.0% |
| !! | AAAAAAAAAAAAACCATTGA+TGG | - | Chr3:88782252-88782271 | MsG0380016866.01.T01:intron | 15.0% |
| !! | ATATATTAATTACCATTAGT+GGG | - | Chr3:88782067-88782086 | MsG0380016866.01.T01:intron | 15.0% |
| !! | TTTATATTCTCTCAATTATT+TGG | - | Chr3:88780836-88780855 | MsG0380016866.01.T01:three_prime_UTR | 15.0% |
| !!! | AAAGCATGTATATTATTTTT+TGG | - | Chr3:88781665-88781684 | MsG0380016866.01.T01:intron | 15.0% |
| !!! | TAAATCTATTTAGATTAGTT+TGG | - | Chr3:88783506-88783525 | MsG0380016866.01.T01:CDS | 15.0% |
| !!! | TGATGAGTTTATTTTAATTT+GGG | - | Chr3:88782389-88782408 | MsG0380016866.01.T01:intron | 15.0% |
| !!! | TTGATGAGTTTATTTTAATT+TGG | - | Chr3:88782388-88782407 | MsG0380016866.01.T01:intron | 15.0% |
| !! | ATAAGTATAACCTAAAAAGA+AGG | - | Chr3:88782211-88782230 | MsG0380016866.01.T01:intron | 20.0% |
| !! | ATGCTTGTAAAAGATAATTA+CGG | + | Chr3:88781905-88781924 | None:intergenic | 20.0% |
| !! | ATTGTATGTATTGTATATAG+AGG | - | Chr3:88783897-88783916 | MsG0380016866.01.T01:five_prime_UTR | 20.0% |
| !! | CTAAATAGATTTAGATTGTA+AGG | + | Chr3:88783499-88783518 | None:intergenic | 20.0% |
| !! | GATATATTAATTACCATTAG+TGG | - | Chr3:88782066-88782085 | MsG0380016866.01.T01:intron | 20.0% |
| !! | TCTTACTTCTATTATTGATA+GGG | - | Chr3:88782346-88782365 | MsG0380016866.01.T01:intron | 20.0% |
| !!! | AATGTGTTTGTATTTAAGAT+CGG | - | Chr3:88781598-88781617 | MsG0380016866.01.T01:CDS | 20.0% |
| !!! | ACATTTTTTTTTTATGAGTC+AGG | - | Chr3:88781246-88781265 | MsG0380016866.01.T01:CDS | 20.0% |
| !!! | ACTGATTTTTAAACAGAAAA+TGG | - | Chr3:88782916-88782935 | MsG0380016866.01.T01:intron | 20.0% |
| !!! | ATTCTTCATCGTTTTTATTT+CGG | + | Chr3:88783194-88783213 | None:intergenic | 20.0% |
| !!! | TATATATTTTTACTACACAC+AGG | - | Chr3:88783147-88783166 | MsG0380016866.01.T01:intron | 20.0% |
| !!! | TGTGTTAAATTTTCATTACT+AGG | + | Chr3:88781229-88781248 | None:intergenic | 20.0% |
| !!! | TTAAATTTTCATTACTAGGA+GGG | + | Chr3:88781225-88781244 | None:intergenic | 20.0% |
| ! | AAGAAGAAATAGAAAGAAAC+CGG | - | Chr3:88780899-88780918 | MsG0380016866.01.T01:three_prime_UTR | 25.0% |
| ! | ACTGGATAATAAACTGTTAA+AGG | + | Chr3:88783625-88783644 | None:intergenic | 25.0% |
| ! | ATATAATAACAGCTGTGATT+GGG | - | Chr3:88781292-88781311 | MsG0380016866.01.T01:CDS | 25.0% |
| ! | ATTCTTGATCATGTACTTTA+CGG | - | Chr3:88782787-88782806 | MsG0380016866.01.T01:intron | 25.0% |
| ! | CTTCTTTCAACATAATGTAT+GGG | + | Chr3:88780885-88780904 | None:intergenic | 25.0% |
| ! | GAATTTCACAAGTTTACATT+TGG | - | Chr3:88781108-88781127 | MsG0380016866.01.T01:CDS | 25.0% |
| ! | GATGTAATATTCTTAAGAGT+TGG | - | Chr3:88781724-88781743 | MsG0380016866.01.T01:intron | 25.0% |
| ! | GTCTTACTTCTATTATTGAT+AGG | - | Chr3:88782345-88782364 | MsG0380016866.01.T01:intron | 25.0% |
| ! | TCAAATTCTCATTGAAATTC+AGG | - | Chr3:88783049-88783068 | MsG0380016866.01.T01:intron | 25.0% |
| ! | TCTTCTTTCAACATAATGTA+TGG | + | Chr3:88780886-88780905 | None:intergenic | 25.0% |
| ! | TGTAAAAGATAATTACGGTA+TGG | + | Chr3:88781900-88781919 | None:intergenic | 25.0% |
| ! | TTCTTTCAACATAATGTATG+GGG | + | Chr3:88780884-88780903 | None:intergenic | 25.0% |
| ! | TTTAACAGTTTATTATCCAG+TGG | - | Chr3:88783624-88783643 | MsG0380016866.01.T01:intron | 25.0% |
| !! | ACAAATGCTAATAGGTATTT+TGG | + | Chr3:88782327-88782346 | None:intergenic | 25.0% |
| !! | CAATATCAATCCTTCTTTTT+AGG | + | Chr3:88782224-88782243 | None:intergenic | 25.0% |
| !! | GTTAAATTTTCATTACTAGG+AGG | + | Chr3:88781226-88781245 | None:intergenic | 25.0% |
| !! | TAGTTTCAAACATAATTTGC+AGG | - | Chr3:88781768-88781787 | MsG0380016866.01.T01:intron | 25.0% |
| !!! | ACATATTTTTGATCCATCAA+TGG | + | Chr3:88782268-88782287 | None:intergenic | 25.0% |
| !!! | TTATTTTAATTTGGGTGACA+GGG | - | Chr3:88782397-88782416 | MsG0380016866.01.T01:intron | 25.0% |
| !!! | TTTATTTTAATTTGGGTGAC+AGG | - | Chr3:88782396-88782415 | MsG0380016866.01.T01:intron | 25.0% |
| ACATTGCAACAAAAGTAGTT+AGG | + | Chr3:88783549-88783568 | None:intergenic | 30.0% | |
| ATCAAACAATTGTACTCAAG+TGG | - | Chr3:88782712-88782731 | MsG0380016866.01.T01:intron | 30.0% | |
| CATATAATAACAGCTGTGAT+TGG | - | Chr3:88781291-88781310 | MsG0380016866.01.T01:CDS | 30.0% | |
| CCTTTCTTTAATGATGTTCT+GGG | - | Chr3:88783574-88783593 | MsG0380016866.01.T01:intron | 30.0% | |
| GAAGTAAGACAAATGCTAAT+AGG | + | Chr3:88782335-88782354 | None:intergenic | 30.0% | |
| GTTCAGTACTTGTATCTTTA+TGG | - | Chr3:88781819-88781838 | MsG0380016866.01.T01:CDS | 30.0% | |
| TCCTTTCTTTAATGATGTTC+TGG | - | Chr3:88783573-88783592 | MsG0380016866.01.T01:intron | 30.0% | |
| TGTCAACAACAACAAATTGT+GGG | - | Chr3:88782980-88782999 | MsG0380016866.01.T01:intron | 30.0% | |
| TTACATCCAAAAGTAGAACT+TGG | + | Chr3:88782765-88782784 | None:intergenic | 30.0% | |
| TTTATGAGTCAGGAACAATA+TGG | - | Chr3:88781256-88781275 | MsG0380016866.01.T01:CDS | 30.0% | |
| TTTGCTTGTATTTAAGAGCA+TGG | + | Chr3:88781546-88781565 | None:intergenic | 30.0% | |
| ! | AAAGAGAAGCTATACTTTTG+TGG | - | Chr3:88781458-88781477 | MsG0380016866.01.T01:CDS | 30.0% |
| ! | AATGCTGCAATAATGTCTTT+TGG | - | Chr3:88782565-88782584 | MsG0380016866.01.T01:intron | 30.0% |
| ! | AGAACTTGGTTCTCTAAATT+TGG | + | Chr3:88782751-88782770 | None:intergenic | 30.0% |
| ! | ATGCTTTATTGTATCAGTTG+TGG | - | Chr3:88783720-88783739 | MsG0380016866.01.T01:intron | 30.0% |
| ! | CTTTTCTCATTTGCAAACAA+AGG | + | Chr3:88783842-88783861 | None:intergenic | 30.0% |
| ! | TTGAGAGTATGAATAAGCAA+AGG | + | Chr3:88783033-88783052 | None:intergenic | 30.0% |
| ! | TTGCTTGTATTTAAGAGCAT+GGG | + | Chr3:88781545-88781564 | None:intergenic | 30.0% |
| ! | TTTCAAACATAATTTGCAGG+CGG | - | Chr3:88781771-88781790 | MsG0380016866.01.T01:intron | 30.0% |
| !! | ACAGCATTTTATTTGCTTTG+TGG | - | Chr3:88783241-88783260 | MsG0380016866.01.T01:intron | 30.0% |
| !! | ATCCATTTAGAACTCCATTT+TGG | + | Chr3:88783676-88783695 | None:intergenic | 30.0% |
| !! | TCCATTTAGAACTCCATTTT+GGG | + | Chr3:88783675-88783694 | None:intergenic | 30.0% |
| !! | TTCATCGTTTTTATTTCGGA+TGG | + | Chr3:88783190-88783209 | None:intergenic | 30.0% |
| !! | TTTGTGTTCCACTTTTGTTT+GGG | + | Chr3:88783455-88783474 | None:intergenic | 30.0% |
| !! | TTTTGTGTTCCACTTTTGTT+TGG | + | Chr3:88783456-88783475 | None:intergenic | 30.0% |
| !!! | GAGTTCTAAATGGATTTTGT+TGG | - | Chr3:88783681-88783700 | MsG0380016866.01.T01:intron | 30.0% |
| !!! | TGTTAACAGTCTCGTTTTTT+GGG | + | Chr3:88782846-88782865 | None:intergenic | 30.0% |
| AACAGAAAATGGTACCTTCA+AGG | - | Chr3:88782927-88782946 | MsG0380016866.01.T01:intron | 35.0% | |
| ACAGAAAATGGTACCTTCAA+GGG | - | Chr3:88782928-88782947 | MsG0380016866.01.T01:intron | 35.0% | |
| ACTCCAAAACTGATCATGTA+TGG | + | Chr3:88782488-88782507 | None:intergenic | 35.0% | |
| ATCAACTCACATCATGCTAA+TGG | + | Chr3:88781874-88781893 | None:intergenic | 35.0% | |
| ATGAAGTATACAAAGTGACG+AGG | + | Chr3:88781395-88781414 | None:intergenic | 35.0% | |
| CCCAGAACATCATTAAAGAA+AGG | + | Chr3:88783577-88783596 | None:intergenic | 35.0% | |
| CTCCAAAACTGATCATGTAT+GGG | + | Chr3:88782487-88782506 | None:intergenic | 35.0% | |
| CTTTAGGTCCTCTATAATAC+TGG | + | Chr3:88783764-88783783 | None:intergenic | 35.0% | |
| GTCAACAACAACAAATTGTG+GGG | - | Chr3:88782981-88783000 | MsG0380016866.01.T01:intron | 35.0% | |
| GTGTCAACAACAACAAATTG+TGG | - | Chr3:88782979-88782998 | MsG0380016866.01.T01:intron | 35.0% | |
| TAATGTGTACCTGTTCGTTT+AGG | + | Chr3:88780986-88781005 | None:intergenic | 35.0% | |
| TATCTTTATGGCAGTGCAAT+AGG | - | Chr3:88781831-88781850 | MsG0380016866.01.T01:CDS | 35.0% | |
| TCAACTCACATCATGCTAAT+GGG | + | Chr3:88781873-88781892 | None:intergenic | 35.0% | |
| TCTAGATGTCTCCATTTATC+AGG | - | Chr3:88782431-88782450 | MsG0380016866.01.T01:intron | 35.0% | |
| TGGAGATGTATATCTTGCAA+AGG | - | Chr3:88783644-88783663 | MsG0380016866.01.T01:intron | 35.0% | |
| TTAGTATGTACAATCCAGCT+TGG | - | Chr3:88783320-88783339 | MsG0380016866.01.T01:CDS | 35.0% | |
| TTCCAGAGTTTCATAATACG+TGG | - | Chr3:88782531-88782550 | MsG0380016866.01.T01:intron | 35.0% | |
| TTCTCATTTGCAAACAAAGG+AGG | + | Chr3:88783839-88783858 | None:intergenic | 35.0% | |
| ! | AACCCATACATGATCAGTTT+TGG | - | Chr3:88782482-88782501 | MsG0380016866.01.T01:intron | 35.0% |
| ! | AGACAGGTTGAACATATACT+TGG | + | Chr3:88783396-88783415 | None:intergenic | 35.0% |
| ! | AGAGAACCAAGTTCTACTTT+TGG | - | Chr3:88782756-88782775 | MsG0380016866.01.T01:intron | 35.0% |
| ! | GATCTTTTCCTCCTGATAAA+TGG | + | Chr3:88782445-88782464 | None:intergenic | 35.0% |
| ! | TATTCAGGATCAAGTTCTGA+AGG | + | Chr3:88780944-88780963 | None:intergenic | 35.0% |
| ! | TGAATGGCTTGTAATGCTTT+AGG | + | Chr3:88783780-88783799 | None:intergenic | 35.0% |
| ! | TTCAAACATAATTTGCAGGC+GGG | - | Chr3:88781772-88781791 | MsG0380016866.01.T01:intron | 35.0% |
| !! | AATGATGTTCTGGGATTTCT+TGG | - | Chr3:88783583-88783602 | MsG0380016866.01.T01:intron | 35.0% |
| !! | ATCGTTTTTATTTCGGATGG+TGG | + | Chr3:88783187-88783206 | None:intergenic | 35.0% |
| !! | ATTCAGGATCAAGTTCTGAA+GGG | + | Chr3:88780943-88780962 | None:intergenic | 35.0% |
| !! | TCCCAAAATGGAGTTCTAAA+TGG | - | Chr3:88783671-88783690 | MsG0380016866.01.T01:intron | 35.0% |
| !! | TTGTGTTCCACTTTTGTTTG+GGG | + | Chr3:88783454-88783473 | None:intergenic | 35.0% |
| !! | TTGTTCTAAAGACCCACTAA+TGG | + | Chr3:88782082-88782101 | None:intergenic | 35.0% |
| !!! | GTGTTAACAGTCTCGTTTTT+TGG | + | Chr3:88782847-88782866 | None:intergenic | 35.0% |
| !!! | GTTAACAGTCTCGTTTTTTG+GGG | + | Chr3:88782845-88782864 | None:intergenic | 35.0% |
| AGAAAGGAGCAGCAAAAAGA+TGG | - | Chr3:88783428-88783447 | MsG0380016866.01.T01:CDS | 40.0% | |
| AGATGTCTCCATTTATCAGG+AGG | - | Chr3:88782434-88782453 | MsG0380016866.01.T01:intron | 40.0% | |
| AGATTGTAAGGACGAAAACC+CGG | + | Chr3:88783487-88783506 | None:intergenic | 40.0% | |
| CAAATGAGAAAAGCTGTTGC+GGG | - | Chr3:88783849-88783868 | MsG0380016866.01.T01:CDS | 40.0% | |
| CACCACGTATTATGAAACTC+TGG | + | Chr3:88782536-88782555 | None:intergenic | 40.0% | |
| CAGAGTTTCATAATACGTGG+TGG | - | Chr3:88782534-88782553 | MsG0380016866.01.T01:intron | 40.0% | |
| CTAGCTGAATGTTATCGTTG+TGG | - | Chr3:88781420-88781439 | MsG0380016866.01.T01:CDS | 40.0% | |
| CTATTCCACAAACCGTGTAT+TGG | + | Chr3:88781800-88781819 | None:intergenic | 40.0% | |
| CTGAAAAGGATCATCACCAA+AGG | + | Chr3:88781372-88781391 | None:intergenic | 40.0% | |
| GAACACAAAATTCCAATCCC+GGG | - | Chr3:88783466-88783485 | MsG0380016866.01.T01:CDS | 40.0% | |
| GCAAATGAGAAAAGCTGTTG+CGG | - | Chr3:88783848-88783867 | MsG0380016866.01.T01:CDS | 40.0% | |
| GGAACACAAAATTCCAATCC+CGG | - | Chr3:88783465-88783484 | MsG0380016866.01.T01:CDS | 40.0% | |
| GTCTTTGCATTCGTAGAGAA+AGG | - | Chr3:88783412-88783431 | MsG0380016866.01.T01:CDS | 40.0% | |
| TAGGTCCTCTATAATACTGG+CGG | + | Chr3:88783761-88783780 | None:intergenic | 40.0% | |
| TATTTGCTTTGTGGCTGCAT+GGG | - | Chr3:88783250-88783269 | MsG0380016866.01.T01:intron | 40.0% | |
| TGCAAAGGAAGATCCCAAAA+TGG | - | Chr3:88783659-88783678 | MsG0380016866.01.T01:intron | 40.0% | |
| TGCAAGATATACATCTCCAC+TGG | + | Chr3:88783643-88783662 | None:intergenic | 40.0% | |
| TTAGCAATTTCCCAAACAGC+AGG | - | Chr3:88782610-88782629 | MsG0380016866.01.T01:intron | 40.0% | |
| TTATTTGCTTTGTGGCTGCA+TGG | - | Chr3:88783249-88783268 | MsG0380016866.01.T01:intron | 40.0% | |
| TTCTCTACGAATGCAAAGAC+AGG | + | Chr3:88783412-88783431 | None:intergenic | 40.0% | |
| !! | GTGTCGATCTTTTGTCTTCT+TGG | - | Chr3:88781130-88781149 | MsG0380016866.01.T01:CDS | 40.0% |
| !! | TCTTTTGGCTATTCCACAGT+TGG | - | Chr3:88782580-88782599 | MsG0380016866.01.T01:intron | 40.0% |
| !!! | TGGGGAATTTTTCAAGCTCT+TGG | - | Chr3:88782999-88783018 | MsG0380016866.01.T01:intron | 40.0% |
| AACGACGATAACCTGCTGTT+TGG | + | Chr3:88782624-88782643 | None:intergenic | 45.0% | |
| AAGATGGCCCCAAACAAAAG+TGG | - | Chr3:88783444-88783463 | MsG0380016866.01.T01:CDS | 45.0% | |
| ACAAAGTGACGAGGCTGAAA+AGG | + | Chr3:88781386-88781405 | None:intergenic | 45.0% | |
| ATAACAGCTGTGATTGGGTC+TGG | - | Chr3:88781297-88781316 | MsG0380016866.01.T01:CDS | 45.0% | |
| ATACTTGGTATGCTCCCACA+AGG | + | Chr3:88783381-88783400 | None:intergenic | 45.0% | |
| CATTTGGAGAACAAGCACCA+GGG | - | Chr3:88783281-88783300 | MsG0380016866.01.T01:intron | 45.0% | |
| CTCAACCGCCAGTATTATAG+AGG | - | Chr3:88783753-88783772 | MsG0380016866.01.T01:intron | 45.0% | |
| GATGCAGTTCGTAGCATTCT+TGG | - | Chr3:88781480-88781499 | MsG0380016866.01.T01:CDS | 45.0% | |
| GATTGTAAGGACGAAAACCC+GGG | + | Chr3:88783486-88783505 | None:intergenic | 45.0% | |
| GCTCAATACTCTGAGCTGAA+TGG | + | Chr3:88783796-88783815 | None:intergenic | 45.0% | |
| TAACAGCTGTGATTGGGTCT+GGG | - | Chr3:88781298-88781317 | MsG0380016866.01.T01:CDS | 45.0% | |
| TAGCTTCTCTTTCCATGCAC+AGG | + | Chr3:88781450-88781469 | None:intergenic | 45.0% | |
| TGAAGGGACCATCTATGGAA+TGG | + | Chr3:88780927-88780946 | None:intergenic | 45.0% | |
| TGCTAAAAAGACGCCAACTG+TGG | + | Chr3:88782596-88782615 | None:intergenic | 45.0% | |
| ! | ACGACGATAACCTGCTGTTT+GGG | + | Chr3:88782623-88782642 | None:intergenic | 45.0% |
| ! | TTCTTGGAGCAGTGGGATTT+TGG | - | Chr3:88783599-88783618 | MsG0380016866.01.T01:intron | 45.0% |
| !! | AGTTCTGAAGGGACCATCTA+TGG | + | Chr3:88780932-88780951 | None:intergenic | 45.0% |
| !!! | CAGTCTCGTTTTTTGGGGAA+AGG | + | Chr3:88782840-88782859 | None:intergenic | 45.0% |
| !! | AAAAAAAAAAAAATTAATTC+GGG | - | Chr3:88782871-88782890 | MsG0380016866.01.T01:intron | 5.0% |
| AACAGCTGTGATTGGGTCTG+GGG | - | Chr3:88781299-88781318 | MsG0380016866.01.T01:CDS | 50.0% | |
| AACCGGAGCCATTCCATAGA+TGG | - | Chr3:88780916-88780935 | MsG0380016866.01.T01:three_prime_UTR | 50.0% | |
| AATCCAGTGAGCAAGTTCCC+TGG | + | Chr3:88783301-88783320 | None:intergenic | 50.0% | |
| ACGGTAACTCGAACGAACTC+AGG | - | Chr3:88782806-88782825 | MsG0380016866.01.T01:intron | 50.0% | |
| AGAAAAGCTGTTGCGGGCAA+AGG | - | Chr3:88783855-88783874 | MsG0380016866.01.T01:CDS | 50.0% | |
| CCTGAATACTTCGACGACGA+TGG | - | Chr3:88780956-88780975 | MsG0380016866.01.T01:three_prime_UTR | 50.0% | |
| CTGGGATTTCTTGGAGCAGT+GGG | - | Chr3:88783592-88783611 | MsG0380016866.01.T01:intron | 50.0% | |
| GACCATCTATGGAATGGCTC+CGG | + | Chr3:88780921-88780940 | None:intergenic | 50.0% | |
| GATGGTCGTCCTAAACGAAC+AGG | - | Chr3:88780974-88780993 | MsG0380016866.01.T01:three_prime_UTR | 50.0% | |
| GCATTTGGAGAACAAGCACC+AGG | - | Chr3:88783280-88783299 | MsG0380016866.01.T01:intron | 50.0% | |
| GGGTTGCTTGACATGTGACA+TGG | + | Chr3:88782467-88782486 | None:intergenic | 50.0% | |
| GTATCAGTTGTGGCTGCTCT+TGG | - | Chr3:88783730-88783749 | MsG0380016866.01.T01:intron | 50.0% | |
| TAAGGACGAAAACCCGGGAT+TGG | + | Chr3:88783481-88783500 | None:intergenic | 50.0% | |
| ! | CCATCGTCGTCGAAGTATTC+AGG | + | Chr3:88780959-88780978 | None:intergenic | 50.0% |
| ! | GCTATCCTTAGCATGGGCTA+CGG | - | Chr3:88781323-88781342 | MsG0380016866.01.T01:CDS | 50.0% |
| ! | GGCAGTAGATGTTGCTTGTG+AGG | + | Chr3:88783818-88783837 | None:intergenic | 50.0% |
| ! | TCCAGCTTGGCTCATCGATT+TGG | - | Chr3:88783333-88783352 | MsG0380016866.01.T01:CDS | 50.0% |
| ! | TCTGGGATTTCTTGGAGCAG+TGG | - | Chr3:88783591-88783610 | MsG0380016866.01.T01:intron | 50.0% |
| ! | TGCATGGGCTATGCTGCATT+TGG | - | Chr3:88783265-88783284 | MsG0380016866.01.T01:intron | 50.0% |
| ! | TGGGGTGCTATCCTTAGCAT+GGG | - | Chr3:88781317-88781336 | MsG0380016866.01.T01:CDS | 50.0% |
| !! | ACCTTCAAGGGTACTCTCAC+TGG | - | Chr3:88782940-88782959 | MsG0380016866.01.T01:intron | 50.0% |
| !! | ACGGCACAATTGGGTTGGAT+TGG | - | Chr3:88781342-88781361 | MsG0380016866.01.T01:CDS | 50.0% |
| !! | GCACAATTGGGTTGGATTGG+TGG | - | Chr3:88781345-88781364 | MsG0380016866.01.T01:CDS | 50.0% |
| !! | TCCAGTGAGAGTACCCTTGA+AGG | + | Chr3:88782944-88782963 | None:intergenic | 50.0% |
| !! | TCCCACAAGGTGGATTACGA+CGG | + | Chr3:88783368-88783387 | None:intergenic | 50.0% |
| !! | TTCAAGGGTACTCTCACTGG+AGG | - | Chr3:88782943-88782962 | MsG0380016866.01.T01:intron | 50.0% |
| CGTTGTGGAGATCCTGTGCA+TGG | - | Chr3:88781435-88781454 | MsG0380016866.01.T01:CDS | 55.0% | |
| CTTGGTATGCTCCCACAAGG+TGG | + | Chr3:88783378-88783397 | None:intergenic | 55.0% | |
| GCCAAATCGATGAGCCAAGC+TGG | + | Chr3:88783337-88783356 | None:intergenic | 55.0% | |
| GCCGTCGTAATCCACCTTGT+GGG | - | Chr3:88783364-88783383 | MsG0380016866.01.T01:CDS | 55.0% | |
| TGCCGTCGTAATCCACCTTG+TGG | - | Chr3:88783363-88783382 | MsG0380016866.01.T01:CDS | 55.0% | |
| TTGTGCCGTAGCCCATGCTA+AGG | + | Chr3:88781331-88781350 | None:intergenic | 55.0% | |
| ! | AGCATGGGCTACGGCACAAT+TGG | - | Chr3:88781332-88781351 | MsG0380016866.01.T01:CDS | 55.0% |
| ! | CTGGGGTGCTATCCTTAGCA+TGG | - | Chr3:88781316-88781335 | MsG0380016866.01.T01:CDS | 55.0% |
| ! | GCATGGGCTACGGCACAATT+GGG | - | Chr3:88781333-88781352 | MsG0380016866.01.T01:CDS | 55.0% |
| !! | GGGTTGGATTGGTGGTCCTT+TGG | - | Chr3:88781353-88781372 | MsG0380016866.01.T01:CDS | 55.0% |
| GGGCGCCAATACACGGTTTG+TGG | - | Chr3:88781792-88781811 | MsG0380016866.01.T01:CDS | 60.0% | |
| GGGCTACGGCACAATTGGGT+TGG | - | Chr3:88781337-88781356 | MsG0380016866.01.T01:CDS | 60.0% | |
| GTTGCGGGCAAAGGTCGTTG+TGG | - | Chr3:88783864-88783883 | MsG0380016866.01.T01:exon | 60.0% | |
| ! | GCACCAGGGAACTTGCTCAC+TGG | - | Chr3:88783295-88783314 | MsG0380016866.01.T01:intron | 60.0% |
| TGCAGGCGGGCGCCAATACA+CGG | - | Chr3:88781785-88781804 | MsG0380016866.01.T01:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr3 | gene | 88780821 | 88783989 | 88780821 | ID=MsG0380016866.01;Name=MsG0380016866.01 |
| Chr3 | mRNA | 88780821 | 88783989 | 88780821 | ID=MsG0380016866.01.T01;Parent=MsG0380016866.01;Name=MsG0380016866.01.T01;_AED=0.30;_eAED=0.30;_QI=114|0.33|0.75|1|1|1|4|176|342 |
| Chr3 | exon | 88780821 | 88781641 | 88780821 | ID=MsG0380016866.01.T01:exon:12245;Parent=MsG0380016866.01.T01 |
| Chr3 | exon | 88781790 | 88781878 | 88781790 | ID=MsG0380016866.01.T01:exon:12244;Parent=MsG0380016866.01.T01 |
| Chr3 | exon | 88783309 | 88783542 | 88783309 | ID=MsG0380016866.01.T01:exon:12243;Parent=MsG0380016866.01.T01 |
| Chr3 | exon | 88783815 | 88783989 | 88783815 | ID=MsG0380016866.01.T01:exon:12242;Parent=MsG0380016866.01.T01 |
| Chr3 | five_prime_UTR | 88783876 | 88783989 | 88783876 | ID=MsG0380016866.01.T01:five_prime_utr;Parent=MsG0380016866.01.T01 |
| Chr3 | CDS | 88783815 | 88783875 | 88783815 | ID=MsG0380016866.01.T01:cds;Parent=MsG0380016866.01.T01 |
| Chr3 | CDS | 88783309 | 88783542 | 88783309 | ID=MsG0380016866.01.T01:cds;Parent=MsG0380016866.01.T01 |
| Chr3 | CDS | 88781790 | 88781878 | 88781790 | ID=MsG0380016866.01.T01:cds;Parent=MsG0380016866.01.T01 |
| Chr3 | CDS | 88780997 | 88781641 | 88780997 | ID=MsG0380016866.01.T01:cds;Parent=MsG0380016866.01.T01 |
| Chr3 | three_prime_UTR | 88780821 | 88780996 | 88780821 | ID=MsG0380016866.01.T01:three_prime_utr;Parent=MsG0380016866.01.T01 |
| Gene Sequence |
| Protein sequence |
