Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026040.01.T01 | XP_003613576.1 | 83.246 | 382 | 40 | 2 | 1 | 359 | 3 | 383 | 0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026040.01.T01 | G7K9R3 | 83.246 | 382 | 40 | 2 | 1 | 359 | 3 | 383 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0380011759.01 | MsG0580026040.01 | 0.814809 | 1.275215e-51 | 8.642805e-49 |
| MsG0580026040.01 | MsG0580027687.01 | 0.800840 | 1.193164e-48 | 5.612822e-46 |
| MsG0580026040.01 | MsG0580027688.01 | 0.822199 | 2.691092e-53 | 2.237098e-50 |
| MsG0580026040.01 | MsG0680033379.01 | 0.806700 | 7.243137e-50 | 3.957720e-47 |
| MsG0580026040.01 | MsG0780036498.01 | 0.802360 | 5.820941e-49 | 2.845878e-46 |
| MsG0580026040.01 | MsG0780039880.01 | 0.830045 | 3.662095e-55 | 3.814685e-52 |
| MsG0580026040.01 | MsG0880044554.01 | 0.813866 | 2.060335e-51 | 1.361191e-48 |
| MsG0580026040.01 | MsG0880044644.01 | 0.807589 | 4.694430e-50 | 2.624863e-47 |
| MsG0380016866.01 | MsG0580026040.01 | 0.802433 | 5.622553e-49 | 2.753957e-46 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580026040.01.T01 | MTR_5g038260 | 83.246 | 382 | 40 | 2 | 1 | 359 | 3 | 383 | 0.0 | 654 |
| MsG0580026040.01.T01 | MTR_5g038230 | 84.123 | 359 | 53 | 2 | 1 | 359 | 1 | 355 | 0.0 | 627 |
| MsG0580026040.01.T01 | MTR_1g064570 | 46.020 | 402 | 172 | 7 | 1 | 359 | 1 | 400 | 9.75e-119 | 349 |
| MsG0580026040.01.T01 | MTR_1g108740 | 42.708 | 384 | 150 | 12 | 2 | 357 | 3 | 344 | 3.21e-90 | 275 |
| MsG0580026040.01.T01 | MTR_5g082770 | 48.667 | 300 | 125 | 10 | 1 | 282 | 1 | 289 | 6.47e-79 | 244 |
| MsG0580026040.01.T01 | MTR_7g077620 | 41.221 | 393 | 163 | 15 | 4 | 356 | 5 | 369 | 2.05e-75 | 238 |
| MsG0580026040.01.T01 | MTR_7g077660 | 40.355 | 394 | 167 | 14 | 4 | 359 | 5 | 368 | 1.05e-73 | 233 |
| MsG0580026040.01.T01 | MTR_7g077650 | 39.259 | 405 | 160 | 17 | 4 | 359 | 5 | 372 | 3.22e-73 | 232 |
| MsG0580026040.01.T01 | MTR_1g016150 | 38.111 | 307 | 104 | 9 | 2 | 295 | 3 | 236 | 8.70e-57 | 185 |
| MsG0580026040.01.T01 | MTR_5g082780 | 44.715 | 246 | 106 | 8 | 103 | 330 | 1 | 234 | 1.02e-52 | 174 |
| MsG0580026040.01.T01 | MTR_7g076110 | 35.556 | 315 | 149 | 12 | 77 | 359 | 21 | 313 | 3.27e-40 | 144 |
| MsG0580026040.01.T01 | MTR_7g076100 | 39.919 | 248 | 101 | 11 | 142 | 359 | 71 | 300 | 3.14e-35 | 130 |
| MsG0580026040.01.T01 | MTR_7g076100 | 62.000 | 50 | 18 | 1 | 4 | 53 | 6 | 54 | 5.23e-12 | 66.2 |
| MsG0580026040.01.T01 | MTR_1g108750 | 44.099 | 161 | 50 | 5 | 1 | 158 | 1 | 124 | 2.16e-27 | 105 |
| MsG0580026040.01.T01 | MTR_3g114970 | 25.326 | 383 | 226 | 16 | 1 | 354 | 1 | 352 | 3.01e-20 | 90.9 |
| MsG0580026040.01.T01 | MTR_6g023955 | 57.377 | 61 | 26 | 0 | 298 | 358 | 149 | 209 | 3.26e-18 | 82.4 |
| MsG0580026040.01.T01 | MTR_6g023955 | 50.000 | 98 | 43 | 3 | 135 | 227 | 69 | 165 | 3.56e-18 | 82.4 |
| MsG0580026040.01.T01 | MTR_3g114990 | 24.396 | 414 | 227 | 16 | 1 | 354 | 20 | 407 | 5.56e-17 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 74 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTATATTGCTCCTAAAT+TGG | 0.217987 | 5:+29609024 | None:intergenic |
| TAATCATTTGGACTTGTTAT+AGG | 0.239358 | 5:+29608723 | None:intergenic |
| TCTAATCAATTCCACTTAAA+AGG | 0.241393 | 5:+29608037 | None:intergenic |
| TATGACAAATTCTTCGTCTA+TGG | 0.256095 | 5:+29608863 | None:intergenic |
| ATACAAGACACTGACCATTT+TGG | 0.281472 | 5:-29608627 | MsG0580026040.01.T01:CDS |
| TAAAAGCAGGACAAGAGTTT+TGG | 0.281524 | 5:-29608656 | MsG0580026040.01.T01:CDS |
| CTTCTTTGTAACAAAACATT+TGG | 0.301077 | 5:+29608490 | None:intergenic |
| CTGAACCAATTGATCACATT+TGG | 0.319999 | 5:-29609106 | MsG0580026040.01.T01:CDS |
| ACAGGAGCAACATCCTTAAA+AGG | 0.320755 | 5:+29608828 | None:intergenic |
| TTTGTCGAAAGTTGAGAGTT+TGG | 0.333662 | 5:-29608302 | MsG0580026040.01.T01:CDS |
| AATGGATACACTCTATTTGC+AGG | 0.334507 | 5:+29608945 | None:intergenic |
| ATCAACACGATCACCAATTT+AGG | 0.336169 | 5:-29609037 | MsG0580026040.01.T01:CDS |
| ACAAGTATTTAAGTTGGAAT+TGG | 0.337344 | 5:-29608350 | MsG0580026040.01.T01:CDS |
| AACGTAAAACATGGAAGTTT+TGG | 0.351299 | 5:-29608121 | MsG0580026040.01.T01:CDS |
| CCAATTGATCACATTTGGTT+TGG | 0.352054 | 5:-29609101 | MsG0580026040.01.T01:CDS |
| GCATAACCATGGAGCGAGAT+TGG | 0.373158 | 5:-29609175 | None:intergenic |
| TTGTCGAAAGTTGAGAGTTT+GGG | 0.375978 | 5:-29608301 | MsG0580026040.01.T01:CDS |
| AACCTTCTGCACATTGAATT+CGG | 0.379134 | 5:+29608761 | None:intergenic |
| TCAATCATTGGCAAACTAAC+AGG | 0.381258 | 5:+29608810 | None:intergenic |
| CCTTTGAAGTGAGGTTTGTA+AGG | 0.384751 | 5:+29608088 | None:intergenic |
| CCAAACCAAATGTGATCAAT+TGG | 0.396537 | 5:+29609101 | None:intergenic |
| TACTTATTTAGTGAAATCAT+TGG | 0.416138 | 5:-29608443 | MsG0580026040.01.T01:CDS |
| GCTGCAACCACATAATCATT+TGG | 0.420868 | 5:+29608711 | None:intergenic |
| CCTTACATTCTACAATGGTT+TGG | 0.424991 | 5:-29608595 | MsG0580026040.01.T01:CDS |
| TTTCTCAAGTTATCTACAAA+AGG | 0.428648 | 5:-29608224 | MsG0580026040.01.T01:CDS |
| AAAAGGTGGCACAACCCATA+TGG | 0.429129 | 5:+29608054 | None:intergenic |
| TTCTTTACAAGTATTTAAGT+TGG | 0.429360 | 5:-29608356 | MsG0580026040.01.T01:CDS |
| AAGGTATGGCACCTCCCATA+TGG | 0.431844 | 5:-29608069 | MsG0580026040.01.T01:CDS |
| TAAGGTCGATGAAACCAAAA+TGG | 0.438084 | 5:+29608613 | None:intergenic |
| TGGTGAGAAGGTTTATAAGT+AGG | 0.439223 | 5:-29608405 | MsG0580026040.01.T01:CDS |
| ACGAAGAATTTGTCATAACT+TGG | 0.446129 | 5:-29608857 | MsG0580026040.01.T01:CDS |
| GGTGAGAAGGTTTATAAGTA+GGG | 0.448283 | 5:-29608404 | MsG0580026040.01.T01:CDS |
| CATAACCATGGAGCGAGATT+GGG | 0.451858 | 5:-29609174 | None:intergenic |
| GAATGATAAACATCAATCAT+TGG | 0.457445 | 5:+29608798 | None:intergenic |
| CCAAACCATTGTAGAATGTA+AGG | 0.460636 | 5:+29608595 | None:intergenic |
| GAGAGTTGTGGATGGTGAGA+AGG | 0.464771 | 5:-29608417 | MsG0580026040.01.T01:CDS |
| TCAAAAGGACCTCTAGGATA+GGG | 0.487685 | 5:+29608157 | None:intergenic |
| TTATATATTCCCATATCAAA+AGG | 0.509410 | 5:+29608142 | None:intergenic |
| CCTTACAAACCTCACTTCAA+AGG | 0.511620 | 5:-29608088 | MsG0580026040.01.T01:CDS |
| AACAAGTCCAAATGATTATG+TGG | 0.518480 | 5:-29608718 | MsG0580026040.01.T01:CDS |
| CAAACCTCACTTCAAAGGTA+TGG | 0.525919 | 5:-29608083 | MsG0580026040.01.T01:CDS |
| CTTTGAAGTGAGGTTTGTAA+GGG | 0.530606 | 5:+29608089 | None:intergenic |
| AGGTATGGCACCTCCCATAT+GGG | 0.532239 | 5:-29608068 | MsG0580026040.01.T01:CDS |
| AAAGGTGGCACAACCCATAT+GGG | 0.532965 | 5:+29608055 | None:intergenic |
| TCTGAAGGGATCATTAACAT+AGG | 0.534709 | 5:+29609002 | None:intergenic |
| GCTGTGGCTCAAGTCATGGC+TGG | 0.535182 | 5:-29608893 | MsG0580026040.01.T01:CDS |
| GATTTCACTAAATAAGTAAG+TGG | 0.538843 | 5:+29608448 | None:intergenic |
| TGTCTAGCTTTCATAAAAGC+AGG | 0.542520 | 5:-29608669 | MsG0580026040.01.T01:CDS |
| TATTTAGTGAAATCATTGGA+GGG | 0.549492 | 5:-29608439 | MsG0580026040.01.T01:CDS |
| TGAGAAATATGAAGCTGATA+CGG | 0.551909 | 5:+29608240 | None:intergenic |
| GTTTGCCCAATCTCGCTCCA+TGG | 0.556567 | 5:+29609169 | None:intergenic |
| CGAAGAATTTGTCATAACTT+GGG | 0.557211 | 5:-29608856 | MsG0580026040.01.T01:CDS |
| TATGAAAGCTAGACAGCCAC+GGG | 0.557625 | 5:+29608677 | None:intergenic |
| CCCATATCAAAAGGACCTCT+AGG | 0.561580 | 5:+29608151 | None:intergenic |
| TTATTTAGTGAAATCATTGG+AGG | 0.564804 | 5:-29608440 | MsG0580026040.01.T01:CDS |
| ATCAAAAGGACCTCTAGGAT+AGG | 0.568896 | 5:+29608156 | None:intergenic |
| TACCGAATTCAATGTGCAGA+AGG | 0.572902 | 5:-29608763 | MsG0580026040.01.T01:CDS |
| TTATGAAAGCTAGACAGCCA+CGG | 0.592955 | 5:+29608676 | None:intergenic |
| AGGGTCAAAATGTGCAACAA+AGG | 0.594225 | 5:-29608385 | MsG0580026040.01.T01:CDS |
| ATCGACCTTACATTCTACAA+TGG | 0.600500 | 5:-29608600 | MsG0580026040.01.T01:CDS |
| GGTGCCATACCTTTGAAGTG+AGG | 0.604787 | 5:+29608079 | None:intergenic |
| AATCAATTCCACTTAAAAGG+TGG | 0.605003 | 5:+29608040 | None:intergenic |
| AATCATTGGAGGGAGAGTTG+TGG | 0.606251 | 5:-29608429 | MsG0580026040.01.T01:CDS |
| CAAAACAACAAGAGATGCTG+TGG | 0.609992 | 5:-29608909 | MsG0580026040.01.T01:CDS |
| CAAAAGGACCTCTAGGATAG+GGG | 0.614397 | 5:+29608158 | None:intergenic |
| AGATGCTGTGGCTCAAGTCA+TGG | 0.616921 | 5:-29608897 | MsG0580026040.01.T01:CDS |
| GGAATATATAACGTAAAACA+TGG | 0.617818 | 5:-29608130 | MsG0580026040.01.T01:CDS |
| GGACCTCTAGGATAGGGGAC+TGG | 0.619213 | 5:+29608163 | None:intergenic |
| AAGTTGGAATTGGATGACAA+AGG | 0.624229 | 5:-29608340 | MsG0580026040.01.T01:CDS |
| GCAGCAATTTACACTACCCG+TGG | 0.645826 | 5:-29608693 | MsG0580026040.01.T01:CDS |
| AGACTCACTCGCTCTCAACA+TGG | 0.646307 | 5:-29609144 | MsG0580026040.01.T01:CDS |
| ATTGGAGGGAGAGTTGTGGA+TGG | 0.690403 | 5:-29608425 | MsG0580026040.01.T01:CDS |
| GGTGGCACAACCCATATGGG+AGG | 0.690978 | 5:+29608058 | None:intergenic |
| GAACCAGTCCCCTATCCTAG+AGG | 0.694910 | 5:-29608166 | MsG0580026040.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTATTTAGTGAAATCAT+TGG | - | Chr5:29608766-29608785 | MsG0580026040.01.T01:CDS | 20.0% |
| !! | TTATATATTCCCATATCAAA+AGG | + | Chr5:29609070-29609089 | None:intergenic | 20.0% |
| !! | TTCTTTACAAGTATTTAAGT+TGG | - | Chr5:29608853-29608872 | MsG0580026040.01.T01:CDS | 20.0% |
| ! | CTTCTTTGTAACAAAACATT+TGG | + | Chr5:29608722-29608741 | None:intergenic | 25.0% |
| ! | GAATGATAAACATCAATCAT+TGG | + | Chr5:29608414-29608433 | None:intergenic | 25.0% |
| ! | GATTTCACTAAATAAGTAAG+TGG | + | Chr5:29608764-29608783 | None:intergenic | 25.0% |
| ! | GGAATATATAACGTAAAACA+TGG | - | Chr5:29609079-29609098 | MsG0580026040.01.T01:CDS | 25.0% |
| ! | TATTTAGTGAAATCATTGGA+GGG | - | Chr5:29608770-29608789 | MsG0580026040.01.T01:CDS | 25.0% |
| ! | TTATTTAGTGAAATCATTGG+AGG | - | Chr5:29608769-29608788 | MsG0580026040.01.T01:CDS | 25.0% |
| ! | TTTCTCAAGTTATCTACAAA+AGG | - | Chr5:29608985-29609004 | MsG0580026040.01.T01:CDS | 25.0% |
| !! | TTTTGCATTGTCAATTCTAA+TGG | + | Chr5:29608285-29608304 | None:intergenic | 25.0% |
| !!! | ACAAGTATTTAAGTTGGAAT+TGG | - | Chr5:29608859-29608878 | MsG0580026040.01.T01:CDS | 25.0% |
| !!! | TAATCATTTGGACTTGTTAT+AGG | + | Chr5:29608489-29608508 | None:intergenic | 25.0% |
| AACAAGTCCAAATGATTATG+TGG | - | Chr5:29608491-29608510 | MsG0580026040.01.T01:CDS | 30.0% | |
| ACGAAGAATTTGTCATAACT+TGG | - | Chr5:29608352-29608371 | MsG0580026040.01.T01:CDS | 30.0% | |
| CGAAGAATTTGTCATAACTT+GGG | - | Chr5:29608353-29608372 | MsG0580026040.01.T01:CDS | 30.0% | |
| GCATTATATTGCTCCTAAAT+TGG | + | Chr5:29608188-29608207 | None:intergenic | 30.0% | |
| TATGACAAATTCTTCGTCTA+TGG | + | Chr5:29608349-29608368 | None:intergenic | 30.0% | |
| TGAGAAATATGAAGCTGATA+CGG | + | Chr5:29608972-29608991 | None:intergenic | 30.0% | |
| ! | AACGTAAAACATGGAAGTTT+TGG | - | Chr5:29609088-29609107 | MsG0580026040.01.T01:CDS | 30.0% |
| !!! | AATGTTTTATTTGTGGGTGA+CGG | - | Chr5:29608935-29608954 | MsG0580026040.01.T01:CDS | 30.0% |
| !!! | CAATTTTTTCCAACGAGTTA+CGG | + | Chr5:29608646-29608665 | None:intergenic | 30.0% |
| !!! | GGAGACAATGTTTTATTTGT+GGG | - | Chr5:29608929-29608948 | MsG0580026040.01.T01:CDS | 30.0% |
| AACCTTCTGCACATTGAATT+CGG | + | Chr5:29608451-29608470 | None:intergenic | 35.0% | |
| AAGTTGGAATTGGATGACAA+AGG | - | Chr5:29608869-29608888 | MsG0580026040.01.T01:CDS | 35.0% | |
| AATGGATACACTCTATTTGC+AGG | + | Chr5:29608267-29608286 | None:intergenic | 35.0% | |
| ATCAACACGATCACCAATTT+AGG | - | Chr5:29608172-29608191 | MsG0580026040.01.T01:CDS | 35.0% | |
| ATCGACCTTACATTCTACAA+TGG | - | Chr5:29608609-29608628 | MsG0580026040.01.T01:CDS | 35.0% | |
| CCAAACCAAATGTGATCAAT+TGG | + | Chr5:29608111-29608130 | None:intergenic | 35.0% | |
| CCAAACCATTGTAGAATGTA+AGG | + | Chr5:29608617-29608636 | None:intergenic | 35.0% | |
| CCAATTGATCACATTTGGTT+TGG | - | Chr5:29608108-29608127 | MsG0580026040.01.T01:CDS | 35.0% | |
| CCTTACATTCTACAATGGTT+TGG | - | Chr5:29608614-29608633 | MsG0580026040.01.T01:CDS | 35.0% | |
| CTGAACCAATTGATCACATT+TGG | - | Chr5:29608103-29608122 | MsG0580026040.01.T01:CDS | 35.0% | |
| GGTGAGAAGGTTTATAAGTA+GGG | - | Chr5:29608805-29608824 | MsG0580026040.01.T01:CDS | 35.0% | |
| TAAGGTCGATGAAACCAAAA+TGG | + | Chr5:29608599-29608618 | None:intergenic | 35.0% | |
| TCAATCATTGGCAAACTAAC+AGG | + | Chr5:29608402-29608421 | None:intergenic | 35.0% | |
| TCTGAAGGGATCATTAACAT+AGG | + | Chr5:29608210-29608229 | None:intergenic | 35.0% | |
| TGGTGAGAAGGTTTATAAGT+AGG | - | Chr5:29608804-29608823 | MsG0580026040.01.T01:CDS | 35.0% | |
| TTGTCGAAAGTTGAGAGTTT+GGG | - | Chr5:29608908-29608927 | MsG0580026040.01.T01:CDS | 35.0% | |
| TTTGTCGAAAGTTGAGAGTT+TGG | - | Chr5:29608907-29608926 | MsG0580026040.01.T01:CDS | 35.0% | |
| ! | AACTTGGGTGAATCCTTTTA+AGG | - | Chr5:29608368-29608387 | MsG0580026040.01.T01:CDS | 35.0% |
| ! | ATACAAGACACTGACCATTT+TGG | - | Chr5:29608582-29608601 | MsG0580026040.01.T01:intron | 35.0% |
| ! | TAAAAGCAGGACAAGAGTTT+TGG | - | Chr5:29608553-29608572 | MsG0580026040.01.T01:intron | 35.0% |
| ! | TTGTTATTCAAGTGACCCTT+CGG | - | Chr5:29608679-29608698 | MsG0580026040.01.T01:CDS | 35.0% |
| ! | TTTCTGGACTGTTTTCTGAA+GGG | + | Chr5:29608224-29608243 | None:intergenic | 35.0% |
| ! | TTTTCTGGACTGTTTTCTGA+AGG | + | Chr5:29608225-29608244 | None:intergenic | 35.0% |
| !! | CTATACAAACATCGCTTTTC+TGG | + | Chr5:29608240-29608259 | None:intergenic | 35.0% |
| !! | CTTTGAAGTGAGGTTTGTAA+GGG | + | Chr5:29609123-29609142 | None:intergenic | 35.0% |
| !! | TGTCTAGCTTTCATAAAAGC+AGG | - | Chr5:29608540-29608559 | MsG0580026040.01.T01:intron | 35.0% |
| !! | TTGGTTCTGTCTGCAAAAAT+TGG | - | Chr5:29608127-29608146 | MsG0580026040.01.T01:CDS | 35.0% |
| !!! | GGGAGACAATGTTTTATTTG+TGG | - | Chr5:29608928-29608947 | MsG0580026040.01.T01:CDS | 35.0% |
| ACAGGAGCAACATCCTTAAA+AGG | + | Chr5:29608384-29608403 | None:intergenic | 40.0% | |
| AGGGTCAAAATGTGCAACAA+AGG | - | Chr5:29608824-29608843 | MsG0580026040.01.T01:CDS | 40.0% | |
| CAAAACAACAAGAGATGCTG+TGG | - | Chr5:29608300-29608319 | MsG0580026040.01.T01:CDS | 40.0% | |
| CAAACCTCACTTCAAAGGTA+TGG | - | Chr5:29609126-29609145 | MsG0580026040.01.T01:CDS | 40.0% | |
| CCTTACAAACCTCACTTCAA+AGG | - | Chr5:29609121-29609140 | MsG0580026040.01.T01:CDS | 40.0% | |
| GCTGCAACCACATAATCATT+TGG | + | Chr5:29608501-29608520 | None:intergenic | 40.0% | |
| TACCGAATTCAATGTGCAGA+AGG | - | Chr5:29608446-29608465 | MsG0580026040.01.T01:CDS | 40.0% | |
| TGTTATTCAAGTGACCCTTC+GGG | - | Chr5:29608680-29608699 | MsG0580026040.01.T01:CDS | 40.0% | |
| TTATGAAAGCTAGACAGCCA+CGG | + | Chr5:29608536-29608555 | None:intergenic | 40.0% | |
| ! | CCTAGAGGTCCTTTTGATAT+GGG | - | Chr5:29609058-29609077 | MsG0580026040.01.T01:CDS | 40.0% |
| ! | TCCTAGAGGTCCTTTTGATA+TGG | - | Chr5:29609057-29609076 | MsG0580026040.01.T01:CDS | 40.0% |
| !! | ATCAAAAGGACCTCTAGGAT+AGG | + | Chr5:29609056-29609075 | None:intergenic | 40.0% |
| !! | CCTTTGAAGTGAGGTTTGTA+AGG | + | Chr5:29609124-29609143 | None:intergenic | 40.0% |
| !! | TCAAAAGGACCTCTAGGATA+GGG | + | Chr5:29609055-29609074 | None:intergenic | 40.0% |
| AAAAGGTGGCACAACCCATA+TGG | + | Chr5:29609158-29609177 | None:intergenic | 45.0% | |
| AAAGGTGGCACAACCCATAT+GGG | + | Chr5:29609157-29609176 | None:intergenic | 45.0% | |
| AATCATTGGAGGGAGAGTTG+TGG | - | Chr5:29608780-29608799 | MsG0580026040.01.T01:CDS | 45.0% | |
| ATTCTCTGTTCCAAACCCGA+AGG | + | Chr5:29608698-29608717 | None:intergenic | 45.0% | |
| CCCATATCAAAAGGACCTCT+AGG | + | Chr5:29609061-29609080 | None:intergenic | 45.0% | |
| TATGAAAGCTAGACAGCCAC+GGG | + | Chr5:29608535-29608554 | None:intergenic | 45.0% | |
| TTCTCTGTTCCAAACCCGAA+GGG | + | Chr5:29608697-29608716 | None:intergenic | 45.0% | |
| !! | CAAAAGGACCTCTAGGATAG+GGG | + | Chr5:29609054-29609073 | None:intergenic | 45.0% |
| AAGGTATGGCACCTCCCATA+TGG | - | Chr5:29609140-29609159 | MsG0580026040.01.T01:CDS | 50.0% | |
| AGACTCACTCGCTCTCAACA+TGG | - | Chr5:29608065-29608084 | MsG0580026040.01.T01:CDS | 50.0% | |
| AGATGCTGTGGCTCAAGTCA+TGG | - | Chr5:29608312-29608331 | MsG0580026040.01.T01:CDS | 50.0% | |
| AGGTATGGCACCTCCCATAT+GGG | - | Chr5:29609141-29609160 | MsG0580026040.01.T01:CDS | 50.0% | |
| ATTGGAGGGAGAGTTGTGGA+TGG | - | Chr5:29608784-29608803 | MsG0580026040.01.T01:CDS | 50.0% | |
| GAGAGTTGTGGATGGTGAGA+AGG | - | Chr5:29608792-29608811 | MsG0580026040.01.T01:CDS | 50.0% | |
| GCAGCAATTTACACTACCCG+TGG | - | Chr5:29608516-29608535 | MsG0580026040.01.T01:intron | 50.0% | |
| TGGTGTATGCCGTAACTCGT+TGG | - | Chr5:29608634-29608653 | MsG0580026040.01.T01:CDS | 50.0% | |
| ! | GGGTTGTGCCACCTTTTAAG+TGG | - | Chr5:29609161-29609180 | MsG0580026040.01.T01:CDS | 50.0% |
| ! | TTCAAGTGACCCTTCGGGTT+TGG | - | Chr5:29608685-29608704 | MsG0580026040.01.T01:CDS | 50.0% |
| !! | GGTGCCATACCTTTGAAGTG+AGG | + | Chr5:29609133-29609152 | None:intergenic | 50.0% |
| GAACCAGTCCCCTATCCTAG+AGG | - | Chr5:29609043-29609062 | MsG0580026040.01.T01:CDS | 55.0% | |
| GCTGTGGCTCAAGTCATGGC+TGG | - | Chr5:29608316-29608335 | MsG0580026040.01.T01:CDS | 60.0% | |
| GGTGGCACAACCCATATGGG+AGG | + | Chr5:29609154-29609173 | None:intergenic | 60.0% | |
| !! | GGACCTCTAGGATAGGGGAC+TGG | + | Chr5:29609049-29609068 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 29608042 | 29609189 | 29608042 | ID=MsG0580026040.01;Name=MsG0580026040.01 |
| Chr5 | mRNA | 29608042 | 29609189 | 29608042 | ID=MsG0580026040.01.T01;Parent=MsG0580026040.01;Name=MsG0580026040.01.T01;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|359 |
| Chr5 | exon | 29608587 | 29609189 | 29608587 | ID=MsG0580026040.01.T01:exon:7179;Parent=MsG0580026040.01.T01 |
| Chr5 | exon | 29608042 | 29608518 | 29608042 | ID=MsG0580026040.01.T01:exon:7178;Parent=MsG0580026040.01.T01 |
| Chr5 | CDS | 29608587 | 29609189 | 29608587 | ID=MsG0580026040.01.T01:cds;Parent=MsG0580026040.01.T01 |
| Chr5 | CDS | 29608042 | 29608518 | 29608042 | ID=MsG0580026040.01.T01:cds;Parent=MsG0580026040.01.T01 |
| Gene Sequence |
| Protein sequence |
