AlfalfaGEDB | MsG0380017027.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017027.01

KEGG: -
GO: GO:0009055
PFAM: PF02298

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017027.01.T01	XP_003602846.2	86.979	192	20	2	1	192	1	187	5.06E-90	271

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017027.01.T01	Q41001	74.227	194	43	5	1	192	1	189	1.30E-77	233

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017027.01.T01	B7FGF6	86.979	192	20	2	1	192	1	187	2.42e-90	271

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0380017027.01	MsG0780040921.01	0.869306	3.417563e-66	1.276442e-62
MsG0280007878.01	MsG0380017027.01	0.816692	4.850072e-52	3.460514e-49

PPI

Gene1	Gene2	Type
MsG0380017027.01	MsG0680031473.01	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017027.01.T01	MTR_3g099580	86.979	192	19	2	1	192	1	186	6.98e-94	271
MsG0380017027.01.T01	MTR_3g099570	77.604	192	35	3	1	192	1	184	2.45e-92	267
MsG0380017027.01.T01	MTR_3g099680	61.364	220	42	4	7	188	6	220	6.82e-71	214
MsG0380017027.01.T01	MTR_3g099980	61.927	218	42	4	7	188	6	218	2.53e-70	213
MsG0380017027.01.T01	MTR_3g099540	67.717	127	41	0	1	127	1	127	1.07e-57	178
MsG0380017027.01.T01	MTR_8g007020	47.027	185	88	6	7	186	4	183	1.18e-40	136
MsG0380017027.01.T01	MTR_8g007035	56.098	123	50	3	5	124	2	123	8.04e-40	134
MsG0380017027.01.T01	MTR_1g090190	35.928	167	100	2	24	190	20	179	2.64e-32	115
MsG0380017027.01.T01	MTR_5g006040	42.282	149	75	7	13	156	10	152	3.92e-29	107
MsG0380017027.01.T01	MTR_2g088990	40.816	147	79	4	13	153	12	156	3.88e-28	105
MsG0380017027.01.T01	MTR_4g114870	50.833	120	51	4	25	138	27	144	6.10e-28	108
MsG0380017027.01.T01	MTR_4g114870	50.000	100	45	2	27	121	191	290	1.86e-25	101
MsG0380017027.01.T01	MTR_6g080660	48.000	100	52	0	27	126	28	127	1.28e-27	103
MsG0380017027.01.T01	MTR_1g112700	34.694	147	85	4	3	138	7	153	1.26e-25	97.8
MsG0380017027.01.T01	MTR_0334s0010	39.516	124	72	1	3	123	4	127	2.97e-25	97.4
MsG0380017027.01.T01	MTR_1g104800	31.250	192	122	7	1	189	1	185	2.19e-24	94.7
MsG0380017027.01.T01	MTR_6g023760	44.118	102	56	1	21	121	20	121	1.30e-23	92.4
MsG0380017027.01.T01	MTR_4g067200	39.552	134	74	4	3	129	4	137	2.62e-23	91.7
MsG0380017027.01.T01	MTR_4g066110	39.552	134	74	4	3	129	4	137	2.62e-23	91.7
MsG0380017027.01.T01	MTR_7g086140	41.860	129	66	4	1	124	1	125	4.79e-23	90.5
MsG0380017027.01.T01	MTR_7g086190	41.860	129	66	4	1	124	1	125	4.79e-23	90.5
MsG0380017027.01.T01	MTR_7g086160	38.889	126	75	2	1	124	1	126	6.37e-22	87.8
MsG0380017027.01.T01	MTR_6g083240	32.632	190	100	6	8	190	8	176	8.09e-22	87.8
MsG0380017027.01.T01	MTR_1g105130	39.474	114	64	3	13	121	8	121	1.77e-21	86.3
MsG0380017027.01.T01	MTR_1g105120	39.474	114	64	3	13	121	8	121	1.77e-21	86.3
MsG0380017027.01.T01	MTR_8g099220	41.748	103	56	2	24	122	26	128	5.24e-21	84.3
MsG0380017027.01.T01	MTR_7g086220	36.434	129	72	4	1	124	1	124	9.01e-20	82.0
MsG0380017027.01.T01	MTR_7g086090	38.400	125	71	3	1	122	1	122	9.60e-20	84.0
MsG0380017027.01.T01	MTR_7g086230	37.398	123	75	2	1	122	1	122	2.16e-19	81.6
MsG0380017027.01.T01	MTR_1g090420	32.022	178	101	5	1	158	2	179	2.86e-19	82.0
MsG0380017027.01.T01	MTR_2g025580	36.029	136	83	3	16	147	16	151	2.98e-19	80.9
MsG0380017027.01.T01	MTR_7g086100	38.525	122	73	2	1	121	1	121	3.38e-19	82.0
MsG0380017027.01.T01	MTR_4g081100	39.316	117	66	2	10	121	15	131	5.55e-19	81.6
MsG0380017027.01.T01	MTR_2g043730	43.000	100	53	3	22	120	27	123	1.14e-18	78.2
MsG0380017027.01.T01	MTR_8g463180	35.075	134	79	4	12	141	8	137	2.36e-18	81.3
MsG0380017027.01.T01	MTR_7g086280	36.585	123	76	2	1	122	1	122	3.47e-18	78.2
MsG0380017027.01.T01	MTR_2g083250	42.157	102	52	2	29	123	28	129	4.81e-18	79.7
MsG0380017027.01.T01	MTR_4g077787	28.485	165	108	3	2	160	7	167	2.64e-17	76.3
MsG0380017027.01.T01	MTR_3g089035	43.299	97	51	3	24	119	30	123	4.02e-17	74.3
MsG0380017027.01.T01	MTR_8g089110	39.516	124	64	6	1	119	1	118	5.37e-17	73.6
MsG0380017027.01.T01	MTR_6g013420	36.842	133	74	6	8	136	20	146	5.63e-17	75.1
MsG0380017027.01.T01	MTR_2g101300	34.641	153	88	4	7	149	3	153	5.82e-17	75.5
MsG0380017027.01.T01	MTR_2g090580	36.691	139	77	4	29	159	29	164	6.97e-17	75.5
MsG0380017027.01.T01	MTR_4g111640	32.680	153	87	6	13	159	24	166	1.12e-16	74.3
MsG0380017027.01.T01	MTR_4g007250	38.835	103	61	2	21	122	23	124	2.33e-16	73.6
MsG0380017027.01.T01	MTR_6g013200	30.409	171	100	6	1	167	8	163	4.45e-16	72.8
MsG0380017027.01.T01	MTR_2g090575	36.364	121	70	3	8	121	2	122	8.71e-16	74.7
MsG0380017027.01.T01	MTR_6g022170	37.864	103	58	3	24	121	31	132	1.01e-15	71.6
MsG0380017027.01.T01	MTR_4g078410	32.258	155	100	4	29	180	27	179	2.30e-15	71.2
MsG0380017027.01.T01	MTR_2g043790	41.414	99	54	3	22	119	2	97	1.81e-14	66.6
MsG0380017027.01.T01	MTR_4g112310	28.169	142	79	2	41	182	2	120	1.99e-14	67.4
MsG0380017027.01.T01	MTR_1g014120	38.614	101	58	2	42	138	45	145	3.17e-14	68.2
MsG0380017027.01.T01	MTR_3g105930	35.714	98	62	1	42	138	47	144	3.52e-14	67.8
MsG0380017027.01.T01	MTR_4g130780	30.714	140	91	3	1	134	3	142	6.59e-14	67.0
MsG0380017027.01.T01	MTR_8g094990	29.381	194	109	7	8	174	2	194	9.75e-14	68.2
MsG0380017027.01.T01	MTR_8g095013	31.250	176	100	6	8	166	2	173	1.23e-13	68.2
MsG0380017027.01.T01	MTR_4g114830	37.037	108	59	5	18	116	18	125	1.49e-13	65.9
MsG0380017027.01.T01	MTR_8g086360	36.029	136	75	6	12	138	5	137	1.57e-13	66.2
MsG0380017027.01.T01	MTR_4g130800	34.375	128	76	5	1	121	3	129	1.60e-13	67.4
MsG0380017027.01.T01	MTR_4g124280	31.792	173	96	5	24	174	22	194	4.46e-13	65.9
MsG0380017027.01.T01	MTR_8g088830	39.000	100	52	5	24	119	25	119	5.23e-13	63.2
MsG0380017027.01.T01	MTR_4g130800	40.506	79	46	1	44	121	50	128	6.22e-13	65.9
MsG0380017027.01.T01	MTR_8g095020	33.557	149	79	5	28	162	26	168	8.00e-13	65.9
MsG0380017027.01.T01	MTR_5g088170	33.929	112	68	4	30	138	20	128	1.80e-11	60.1
MsG0380017027.01.T01	MTR_5g088180	33.929	112	68	4	30	138	33	141	2.26e-11	60.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017027.01.T01	AT1G72230	47.340	188	83	4	3	183	1	179	1.75e-49	159
MsG0380017027.01.T01	AT1G22480	64.130	92	33	0	35	126	27	118	3.86e-36	124
MsG0380017027.01.T01	AT2G32300	43.651	126	70	1	4	128	3	128	8.16e-30	110
MsG0380017027.01.T01	AT2G32300	38.068	176	87	3	4	178	33	187	1.89e-29	110
MsG0380017027.01.T01	AT3G60270	47.115	104	55	0	23	126	22	125	5.00e-28	104
MsG0380017027.01.T01	AT5G07475	37.179	156	81	3	24	179	27	165	1.42e-26	100
MsG0380017027.01.T01	AT2G26720	37.576	165	99	4	25	186	27	190	9.74e-26	99.0
MsG0380017027.01.T01	AT2G31050	45.217	115	58	3	25	137	27	138	2.21e-25	97.8
MsG0380017027.01.T01	AT2G44790	50.526	95	45	1	35	127	36	130	4.34e-25	97.1
MsG0380017027.01.T01	AT5G26330	44.554	101	53	2	24	121	21	121	9.13e-24	93.2
MsG0380017027.01.T01	AT3G27200	39.161	143	76	4	1	140	1	135	5.89e-23	90.9
MsG0380017027.01.T01	AT3G17675	38.095	105	64	1	18	121	23	127	3.10e-21	85.1
MsG0380017027.01.T01	AT3G60280	42.157	102	59	0	23	124	20	121	1.67e-20	85.5
MsG0380017027.01.T01	AT5G20230	36.628	172	90	5	27	179	25	196	2.59e-18	79.3
MsG0380017027.01.T01	AT5G53870	32.620	187	103	5	7	175	7	188	3.14e-18	81.6
MsG0380017027.01.T01	AT5G53870	32.620	187	103	5	7	175	7	188	6.12e-18	80.9
MsG0380017027.01.T01	AT4G31840	33.803	142	86	4	3	136	1	142	3.84e-17	75.5
MsG0380017027.01.T01	AT2G25060	37.719	114	65	3	28	135	32	145	7.58e-17	75.1
MsG0380017027.01.T01	AT3G18590	34.646	127	76	2	1	121	1	126	1.28e-16	74.3
MsG0380017027.01.T01	AT4G28365	32.895	152	94	4	29	177	31	177	6.38e-16	72.8
MsG0380017027.01.T01	AT1G64640	37.705	122	69	3	24	138	30	151	1.04e-15	72.0
MsG0380017027.01.T01	AT5G15350	36.364	121	70	4	8	122	7	126	3.04e-15	70.5
MsG0380017027.01.T01	AT5G57920	37.113	97	59	2	42	137	43	138	4.36e-15	70.5
MsG0380017027.01.T01	AT4G27520	34.722	144	83	4	10	142	9	152	5.10e-15	72.4
MsG0380017027.01.T01	AT5G57920	37.113	97	59	2	42	137	75	170	5.42e-15	70.9
MsG0380017027.01.T01	AT5G57920	37.113	97	59	2	42	137	42	137	7.74e-15	69.7
MsG0380017027.01.T01	AT3G53330	32.540	126	78	4	23	144	184	306	1.67e-14	70.5
MsG0380017027.01.T01	AT4G30590	33.673	98	64	1	42	138	48	145	4.94e-14	67.8
MsG0380017027.01.T01	AT4G12880	34.167	120	72	5	7	122	10	126	6.71e-14	66.2
MsG0380017027.01.T01	AT1G45063	36.207	116	63	5	26	135	148	258	9.27e-14	68.2
MsG0380017027.01.T01	AT1G45063	36.207	116	63	5	26	135	148	258	1.22e-13	68.6
MsG0380017027.01.T01	AT5G14345	30.469	128	81	3	13	133	2	128	1.71e-13	65.1
MsG0380017027.01.T01	AT3G20570	33.721	172	102	5	9	171	15	183	3.14e-13	65.9
MsG0380017027.01.T01	AT1G48940	37.755	98	54	3	30	121	29	125	5.70e-13	64.7
MsG0380017027.01.T01	AT4G32490	30.841	107	71	2	29	132	33	139	1.18e-12	64.3
MsG0380017027.01.T01	AT2G02850	39.000	100	51	4	24	119	33	126	1.84e-12	62.0
MsG0380017027.01.T01	AT1G79800	33.333	117	67	3	29	135	36	151	2.03e-12	63.2
MsG0380017027.01.T01	AT2G23990	33.684	95	61	2	42	134	47	141	2.87e-12	63.2
MsG0380017027.01.T01	AT5G25090	32.258	124	77	3	7	125	9	130	1.94e-11	60.5
MsG0380017027.01.T01	AT4G01380	31.193	109	65	4	33	133	78	184	4.20e-11	60.1
MsG0380017027.01.T01	AT3G01070	38.462	117	66	3	9	122	12	125	5.78e-11	58.9

Find 72 sgRNAs with CRISPR-Local

Find 88 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTTTGATCTATCCAGATTTA+TGG	0.172815	3:-90841648	MsG0380017027.01.T01:three_prime_UTR
CTTCTTCTTAGCAATTAATA+TGG	0.256926	3:-90842455	MsG0380017027.01.T01:CDS
AGTGGTGGTGGTGGAGGGTG+TGG	0.258082	3:+90841860	None:intergenic
GGTGTGGTGGTGGTTGCAGC+AGG	0.286767	3:+90841876	None:intergenic
GGTGGTGGAGGGTGTGGTGG+TGG	0.288673	3:+90841866	None:intergenic
GGTGGTGGTGGAGGGTGTGG+TGG	0.299929	3:+90841863	None:intergenic
GGAAGGAGTGGTGGTGGTGG+AGG	0.314330	3:+90841854	None:intergenic
GATCTTGATCAGTTATATAT+TGG	0.317167	3:-90841766	MsG0380017027.01.T01:CDS
GAAACTTTCTGTTAAGGTTA+AGG	0.337776	3:-90841973	MsG0380017027.01.T01:CDS
TACTTCATATGTGCTGTTCC+TGG	0.349993	3:-90842014	MsG0380017027.01.T01:CDS
GATAAATCAGGTTGGGCAAT+TGG	0.365257	3:-90842397	MsG0380017027.01.T01:CDS
GACTATAAATCATGCACAAC+TGG	0.368543	3:-90842101	MsG0380017027.01.T01:CDS
GTAGTATTAATTAGTAATCT+AGG	0.376294	3:-90841617	MsG0380017027.01.T01:three_prime_UTR
ACTATGACAGTGTTCAACTA+TGG	0.385966	3:-90842158	MsG0380017027.01.T01:intron
TACAAGAGCCTCCATAAATC+TGG	0.389722	3:+90841637	None:intergenic
GAAGGAGTGGTGGTGGTGGA+GGG	0.390042	3:+90841855	None:intergenic
GTCATTTCCTTCATTGTGAT+AGG	0.401601	3:+90841468	None:intergenic
TGTGGAAGGAGTGGTGGTGG+TGG	0.402692	3:+90841851	None:intergenic
AATAGATAATAATGTGAAAA+GGG	0.424945	3:+90841684	None:intergenic
TGGCATGAAACTTTCTGTTA+AGG	0.430118	3:-90841979	MsG0380017027.01.T01:CDS
TGTGGTGGTGGTTGCAGCAG+GGG	0.433694	3:+90841878	None:intergenic
TAATAGATAATAATGTGAAA+AGG	0.436826	3:+90841683	None:intergenic
TCCTGCTTTCTTGAGAGGGA+TGG	0.445617	3:+90842043	None:intergenic
CCGTTCACTATCTCTTAAGA+TGG	0.450951	3:-90842506	MsG0380017027.01.T01:exon
CCTCTGTCCTGACTATATCT+TGG	0.456089	3:+90841729	None:intergenic
TCTGCAACACCATCACCATC+AGG	0.461815	3:-90841924	MsG0380017027.01.T01:CDS
GTGTGGTGGTGGTTGCAGCA+GGG	0.463658	3:+90841877	None:intergenic
AGAGATAGTGAACGGAAAGC+TGG	0.469761	3:+90842514	None:intergenic
ATGCCACCTGTGCAATGTCC+AGG	0.481287	3:+90841996	None:intergenic
GTGTTCCTGCTTTCTTGAGA+GGG	0.482705	3:+90842039	None:intergenic
TGTGTTCCTGCTTTCTTGAG+AGG	0.493116	3:+90842038	None:intergenic
TTTCTTGAGAGGGATGGTTG+TGG	0.493786	3:+90842049	None:intergenic
CACACCGTTGGAGATAAATC+AGG	0.494660	3:-90842409	MsG0380017027.01.T01:CDS
GGCTAGTGACAAAACATTTG+CGG	0.495560	3:-90842356	MsG0380017027.01.T01:CDS
GGACAGAGGCAGTGCTTCCA+TGG	0.495683	3:-90841715	MsG0380017027.01.T01:three_prime_UTR
TTTGCGGTTGGTGACAGTCT+TGG	0.500707	3:-90842340	MsG0380017027.01.T01:intron
CGTTGGAGATAAATCAGGTT+GGG	0.514147	3:-90842404	MsG0380017027.01.T01:CDS
GGTTGCAGCAGGGGTGCCAT+CGG	0.524569	3:+90841887	None:intergenic
AAGAAGCCTAAAATCAAAGA+AGG	0.528032	3:+90842472	None:intergenic
CTTGCAACTGTCCACACCGT+TGG	0.529565	3:-90842421	MsG0380017027.01.T01:CDS
TTGTGTGGAAGGAGTGGTGG+TGG	0.529906	3:+90841848	None:intergenic
TTGACAACCTATCACAATGA+AGG	0.548937	3:-90841475	MsG0380017027.01.T01:three_prime_UTR
GCAGCAGGGGTGCCATCGGA+AGG	0.553762	3:+90841891	None:intergenic
ACCATCCCTCTCAAGAAAGC+AGG	0.564418	3:-90842044	MsG0380017027.01.T01:CDS
GAACCTTTCCCTGATGGTGA+TGG	0.566964	3:+90841915	None:intergenic
GTTCCTGGACATTGCACAGG+TGG	0.574513	3:-90841999	MsG0380017027.01.T01:CDS
GAAGGTGAACCTTTCCCTGA+TGG	0.578557	3:+90841909	None:intergenic
ACAGTGTTCAACTATGGTGC+TGG	0.581813	3:-90842152	MsG0380017027.01.T01:intron
TGATCTATCCAGATTTATGG+AGG	0.584610	3:-90841645	MsG0380017027.01.T01:three_prime_UTR
CCAACCTGATTTATCTCCAA+CGG	0.588831	3:+90842405	None:intergenic
GTGTGGACAGTTGCAAGAGT+TGG	0.591396	3:+90842427	None:intergenic
AGTGACAAAACATTTGCGGT+TGG	0.594495	3:-90842352	MsG0380017027.01.T01:CDS
GCTGTTCCTGGACATTGCAC+AGG	0.594776	3:-90842002	MsG0380017027.01.T01:CDS
GATGGTGATGGTGTTGCAGA+AGG	0.612608	3:+90841927	None:intergenic
TGAAAAGGGAAAAGAAACCA+TGG	0.614527	3:+90841698	None:intergenic
TTGGTTCTGATTATAACACA+TGG	0.617869	3:-90842378	MsG0380017027.01.T01:CDS
AGCTGAAGATGCACTTTGTG+TGG	0.619201	3:+90841833	None:intergenic
ACGGAAAGCTGGAAAACAGA+TGG	0.622538	3:+90842525	None:intergenic
CCATCTTAAGAGATAGTGAA+CGG	0.626253	3:+90842506	None:intergenic
CTGCAACACCATCACCATCA+GGG	0.628504	3:-90841923	MsG0380017027.01.T01:CDS
CCAAGATATAGTCAGGACAG+AGG	0.629921	3:-90841729	MsG0380017027.01.T01:three_prime_UTR
GAAGATGCACTTTGTGTGGA+AGG	0.630949	3:+90841837	None:intergenic
TGCACTTTGTGTGGAAGGAG+TGG	0.632667	3:+90841842	None:intergenic
CCGTTGGAGATAAATCAGGT+TGG	0.633245	3:-90842405	MsG0380017027.01.T01:CDS
GGGAAAGGTTCACCTTCCGA+TGG	0.642087	3:-90841903	MsG0380017027.01.T01:CDS
ACTTTGTGTGGAAGGAGTGG+TGG	0.644852	3:+90841845	None:intergenic
TCACAATGAAGGAAATGACA+TGG	0.649257	3:-90841464	MsG0380017027.01.T01:three_prime_UTR
ACACCATCACCATCAGGGAA+AGG	0.655836	3:-90841918	MsG0380017027.01.T01:CDS
TGGTTCTGATTATAACACAT+GGG	0.658992	3:-90842377	MsG0380017027.01.T01:CDS
CTGATTTATCTCCAACGGTG+TGG	0.663800	3:+90842410	None:intergenic
TCAATTAGTACAGACAGTAG+TGG	0.678569	3:-90842074	MsG0380017027.01.T01:CDS
CTATGGTGCTGGACACACAG+TGG	0.764173	3:-90842141	MsG0380017027.01.T01:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATAGATAATAATGTGAAAA+GGG	+	Chr3:90842292-90842311	None:intergenic	15.0%
!!	TAATAGATAATAATGTGAAA+AGG	+	Chr3:90842293-90842312	None:intergenic	15.0%
!!	TATATTAGATTTGTAAATTG+TGG	+	Chr3:90841786-90841805	None:intergenic	15.0%
!!	GTAGTATTAATTAGTAATCT+AGG	-	Chr3:90842356-90842375	MsG0380017027.01.T01:CDS	20.0%
!!!	GTTTGTTTTTTTACTTCTTT+GGG	-	Chr3:90842443-90842462	MsG0380017027.01.T01:CDS	20.0%
!!!	TCAATTCAATTTTTTTTAGG+TGG	-	Chr3:90842466-90842485	MsG0380017027.01.T01:CDS	20.0%
!!!	TGCATTTTAGACATTATTTT+AGG	+	Chr3:90842541-90842560	None:intergenic	20.0%
!!!	TGTTTGTTTTTTTACTTCTT+TGG	-	Chr3:90842442-90842461	MsG0380017027.01.T01:CDS	20.0%
!	CTTCTTCTTAGCAATTAATA+TGG	-	Chr3:90841518-90841537	MsG0380017027.01.T01:three_prime_UTR	25.0%
!	GATCTTGATCAGTTATATAT+TGG	-	Chr3:90842207-90842226	MsG0380017027.01.T01:intron	25.0%
!	GTGAAAAATAAAGCAACAAT+TGG	+	Chr3:90842178-90842197	None:intergenic	25.0%
!!	TAATTTTCCAAGATATAGTC+AGG	-	Chr3:90842237-90842256	MsG0380017027.01.T01:intron	25.0%
!!	TTTTGTGCTTGAATGATTAT+TGG	-	Chr3:90842409-90842428	MsG0380017027.01.T01:CDS	25.0%
!!!	AATTTTTTTTAGGTGGTAGT+GGG	-	Chr3:90842473-90842492	MsG0380017027.01.T01:CDS	25.0%
!!!	CTTTATTTTTCACTGTTTCA+TGG	-	Chr3:90842185-90842204	MsG0380017027.01.T01:intron	25.0%
!!!	GGGTCAATTCAATTTTTTTT+AGG	-	Chr3:90842463-90842482	MsG0380017027.01.T01:CDS	25.0%
!!!	TCTAATCCTTCTTTGATTTT+AGG	-	Chr3:90841495-90841514	MsG0380017027.01.T01:three_prime_UTR	25.0%
	AAGAAGCCTAAAATCAAAGA+AGG	+	Chr3:90841504-90841523	None:intergenic	30.0%
	GAAACTTTCTGTTAAGGTTA+AGG	-	Chr3:90842000-90842019	MsG0380017027.01.T01:CDS	30.0%
	GTTTGATCTATCCAGATTTA+TGG	-	Chr3:90842325-90842344	MsG0380017027.01.T01:intron	30.0%
!!	TGGTTCTGATTATAACACAT+GGG	-	Chr3:90841596-90841615	MsG0380017027.01.T01:three_prime_UTR	30.0%
!!	TTGGTTCTGATTATAACACA+TGG	-	Chr3:90841595-90841614	MsG0380017027.01.T01:three_prime_UTR	30.0%
!!!	ATGTTTTTTCTAAAGGAAGG+AGG	+	Chr3:90841426-90841445	None:intergenic	30.0%
!!!	CAATTTTTTTTAGGTGGTAG+TGG	-	Chr3:90842472-90842491	MsG0380017027.01.T01:CDS	30.0%
!!!	GATGGCTATGTTTTTTCTAA+AGG	+	Chr3:90841433-90841452	None:intergenic	30.0%
!!!	GCTATGTTTTTTCTAAAGGA+AGG	+	Chr3:90841429-90841448	None:intergenic	30.0%
	ACTATGACAGTGTTCAACTA+TGG	-	Chr3:90841815-90841834	MsG0380017027.01.T01:CDS	35.0%
	CCATCTTAAGAGATAGTGAA+CGG	+	Chr3:90841470-90841489	None:intergenic	35.0%
	GACTATAAATCATGCACAAC+TGG	-	Chr3:90841872-90841891	MsG0380017027.01.T01:CDS	35.0%
	GTCATTTCCTTCATTGTGAT+AGG	+	Chr3:90842508-90842527	None:intergenic	35.0%
	TCAATTAGTACAGACAGTAG+TGG	-	Chr3:90841899-90841918	MsG0380017027.01.T01:CDS	35.0%
	TCACAATGAAGGAAATGACA+TGG	-	Chr3:90842509-90842528	MsG0380017027.01.T01:exon	35.0%
	TGAAAAGGGAAAAGAAACCA+TGG	+	Chr3:90842278-90842297	None:intergenic	35.0%
	TGATCTATCCAGATTTATGG+AGG	-	Chr3:90842328-90842347	MsG0380017027.01.T01:intron	35.0%
	TGGCATGAAACTTTCTGTTA+AGG	-	Chr3:90841994-90842013	MsG0380017027.01.T01:CDS	35.0%
	TTGACAACCTATCACAATGA+AGG	-	Chr3:90842498-90842517	MsG0380017027.01.T01:exon	35.0%
	AGTGACAAAACATTTGCGGT+TGG	-	Chr3:90841621-90841640	MsG0380017027.01.T01:three_prime_UTR	40.0%
	CCAACCTGATTTATCTCCAA+CGG	+	Chr3:90841571-90841590	None:intergenic	40.0%
	CCGTTCACTATCTCTTAAGA+TGG	-	Chr3:90841467-90841486	MsG0380017027.01.T01:three_prime_UTR	40.0%
	CGTTGGAGATAAATCAGGTT+GGG	-	Chr3:90841569-90841588	MsG0380017027.01.T01:three_prime_UTR	40.0%
	GGCTAGTGACAAAACATTTG+CGG	-	Chr3:90841617-90841636	MsG0380017027.01.T01:three_prime_UTR	40.0%
	TACAAGAGCCTCCATAAATC+TGG	+	Chr3:90842339-90842358	None:intergenic	40.0%
!	TACTTCATATGTGCTGTTCC+TGG	-	Chr3:90841959-90841978	MsG0380017027.01.T01:CDS	40.0%
!!	GATAAATCAGGTTGGGCAAT+TGG	-	Chr3:90841576-90841595	MsG0380017027.01.T01:three_prime_UTR	40.0%
	ACAGTGTTCAACTATGGTGC+TGG	-	Chr3:90841821-90841840	MsG0380017027.01.T01:CDS	45.0%
	ACGGAAAGCTGGAAAACAGA+TGG	+	Chr3:90841451-90841470	None:intergenic	45.0%
	AGAGATAGTGAACGGAAAGC+TGG	+	Chr3:90841462-90841481	None:intergenic	45.0%
	AGCTGAAGATGCACTTTGTG+TGG	+	Chr3:90842143-90842162	None:intergenic	45.0%
	CACACCGTTGGAGATAAATC+AGG	-	Chr3:90841564-90841583	MsG0380017027.01.T01:three_prime_UTR	45.0%
	CCAAGATATAGTCAGGACAG+AGG	-	Chr3:90842244-90842263	MsG0380017027.01.T01:intron	45.0%
	CCGTTGGAGATAAATCAGGT+TGG	-	Chr3:90841568-90841587	MsG0380017027.01.T01:three_prime_UTR	45.0%
	CCTCTGTCCTGACTATATCT+TGG	+	Chr3:90842247-90842266	None:intergenic	45.0%
	CTGATTTATCTCCAACGGTG+TGG	+	Chr3:90841566-90841585	None:intergenic	45.0%
	GAAGATGCACTTTGTGTGGA+AGG	+	Chr3:90842139-90842158	None:intergenic	45.0%
	GTGTTCCTGCTTTCTTGAGA+GGG	+	Chr3:90841937-90841956	None:intergenic	45.0%
	TGTGTTCCTGCTTTCTTGAG+AGG	+	Chr3:90841938-90841957	None:intergenic	45.0%
	TTTCTTGAGAGGGATGGTTG+TGG	+	Chr3:90841927-90841946	None:intergenic	45.0%
	ACACCATCACCATCAGGGAA+AGG	-	Chr3:90842055-90842074	MsG0380017027.01.T01:CDS	50.0%
	ACCATCCCTCTCAAGAAAGC+AGG	-	Chr3:90841929-90841948	MsG0380017027.01.T01:CDS	50.0%
	ACTTTGTGTGGAAGGAGTGG+TGG	+	Chr3:90842131-90842150	None:intergenic	50.0%
	CTGCAACACCATCACCATCA+GGG	-	Chr3:90842050-90842069	MsG0380017027.01.T01:CDS	50.0%
	GAAGGTGAACCTTTCCCTGA+TGG	+	Chr3:90842067-90842086	None:intergenic	50.0%
	GTGTGGACAGTTGCAAGAGT+TGG	+	Chr3:90841549-90841568	None:intergenic	50.0%
	TCCTGCTTTCTTGAGAGGGA+TGG	+	Chr3:90841933-90841952	None:intergenic	50.0%
	TCTGCAACACCATCACCATC+AGG	-	Chr3:90842049-90842068	MsG0380017027.01.T01:CDS	50.0%
	TGCACTTTGTGTGGAAGGAG+TGG	+	Chr3:90842134-90842153	None:intergenic	50.0%
!	GAACCTTTCCCTGATGGTGA+TGG	+	Chr3:90842061-90842080	None:intergenic	50.0%
!!	GATGGTGATGGTGTTGCAGA+AGG	+	Chr3:90842049-90842068	None:intergenic	50.0%
!!	TTTGCGGTTGGTGACAGTCT+TGG	-	Chr3:90841633-90841652	MsG0380017027.01.T01:three_prime_UTR	50.0%
	ATGCCACCTGTGCAATGTCC+AGG	+	Chr3:90841980-90841999	None:intergenic	55.0%
	CTTGCAACTGTCCACACCGT+TGG	-	Chr3:90841552-90841571	MsG0380017027.01.T01:three_prime_UTR	55.0%
	GCTGTTCCTGGACATTGCAC+AGG	-	Chr3:90841971-90841990	MsG0380017027.01.T01:CDS	55.0%
	GGGAAAGGTTCACCTTCCGA+TGG	-	Chr3:90842070-90842089	MsG0380017027.01.T01:CDS	55.0%
	GTTCCTGGACATTGCACAGG+TGG	-	Chr3:90841974-90841993	MsG0380017027.01.T01:CDS	55.0%
	TTGTGTGGAAGGAGTGGTGG+TGG	+	Chr3:90842128-90842147	None:intergenic	55.0%
!	CTATGGTGCTGGACACACAG+TGG	-	Chr3:90841832-90841851	MsG0380017027.01.T01:CDS	55.0%
	GGACAGAGGCAGTGCTTCCA+TGG	-	Chr3:90842258-90842277	MsG0380017027.01.T01:intron	60.0%
!!	GAAGGAGTGGTGGTGGTGGA+GGG	+	Chr3:90842121-90842140	None:intergenic	60.0%
!!	GTGTGGTGGTGGTTGCAGCA+GGG	+	Chr3:90842099-90842118	None:intergenic	60.0%
!!	TGTGGAAGGAGTGGTGGTGG+TGG	+	Chr3:90842125-90842144	None:intergenic	60.0%
!!	TGTGGTGGTGGTTGCAGCAG+GGG	+	Chr3:90842098-90842117	None:intergenic	60.0%
!!	AGTGGTGGTGGTGGAGGGTG+TGG	+	Chr3:90842116-90842135	None:intergenic	65.0%
!!	GGAAGGAGTGGTGGTGGTGG+AGG	+	Chr3:90842122-90842141	None:intergenic	65.0%
!!	GGTGTGGTGGTGGTTGCAGC+AGG	+	Chr3:90842100-90842119	None:intergenic	65.0%
!!	GGTTGCAGCAGGGGTGCCAT+CGG	+	Chr3:90842089-90842108	None:intergenic	65.0%
!!	GCAGCAGGGGTGCCATCGGA+AGG	+	Chr3:90842085-90842104	None:intergenic	70.0%
!!	GGTGGTGGAGGGTGTGGTGG+TGG	+	Chr3:90842110-90842129	None:intergenic	70.0%
!!	GGTGGTGGTGGAGGGTGTGG+TGG	+	Chr3:90842113-90842132	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	90841419	90842576	90841419	ID=MsG0380017027.01;Name=MsG0380017027.01
Chr3	mRNA	90841419	90842576	90841419	ID=MsG0380017027.01.T01;Parent=MsG0380017027.01;Name=MsG0380017027.01.T01;_AED=0.49;_eAED=0.49;_QI=67\|1\|1\|1\|1\|1\|2\|342\|192
Chr3	exon	90841419	90842170	90841419	ID=MsG0380017027.01.T01:exon:25346;Parent=MsG0380017027.01.T01
Chr3	exon	90842341	90842576	90842341	ID=MsG0380017027.01.T01:exon:25345;Parent=MsG0380017027.01.T01
Chr3	five_prime_UTR	90842510	90842576	90842510	ID=MsG0380017027.01.T01:five_prime_utr;Parent=MsG0380017027.01.T01
Chr3	CDS	90842341	90842509	90842341	ID=MsG0380017027.01.T01:cds;Parent=MsG0380017027.01.T01
Chr3	CDS	90841761	90842170	90841761	ID=MsG0380017027.01.T01:cds;Parent=MsG0380017027.01.T01
Chr3	three_prime_UTR	90841419	90841760	90841419	ID=MsG0380017027.01.T01:three_prime_utr;Parent=MsG0380017027.01.T01

Gene Sequence

>MsG0380017027.01.T01

ATGGCACTCTCTAATCCTTCTTTGATTTTAGGCTTCTTCTTAGCAATTAATATGGCACTGCCAACTCTTGCAACTGTCCACACCGTTGGAGATAAATCAGGTTGGGCAATTGGTTCTGATTATAACACATGGGCTAGTGACAAAACATTTGCGGTTGGTGACAGTCTTGTGTTCAACTATGGTGCTGGACACACAGTGGATGAAGTTAAAGAAAGTGACTATAAATCATGCACAACTGGAAATTCAATTAGTACAGACAGTAGTGGTGCCACAACCATCCCTCTCAAGAAAGCAGGAACACATTACTTCATATGTGCTGTTCCTGGACATTGCACAGGTGGCATGAAACTTTCTGTTAAGGTTAAGGCTTCTTCTAGTGCTGCTTCTGCTCCTTCTGCAACACCATCACCATCAGGGAAAGGTTCACCTTCCGATGGCACCCCTGCTGCAACCACCACCACACCCTCCACCACCACCACTCCTTCCACACAAAGTGCATCTTCAGCTACTAGTATCTCACCAATTGTTGCTTTATTTTTCACTGTTTCATGGATCTTGATCAGTTATATATTGGTGTGA

Protein sequence

>MsG0380017027.01.T01

MALSNPSLILGFFLAINMALPTLATVHTVGDKSGWAIGSDYNTWASDKTFAVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSISTDSSGATTIPLKKAGTHYFICAVPGHCTGGMKLSVKVKASSSAASAPSATPSPSGKGSPSDGTPAATTTTPSTTTTPSTQSASSATSISPIVALFFTVSWILISYILV*