AlfalfaGEDB | MsG0380017402.01

M. sativa cultivar ZhongmuNo.1 / MsG0380017402.01

KEGG: -
GO: -
PFAM: PF14547

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017402.01.T01	PNX82529.1	81.538	130	22	1	1	130	1	128	8.17E-61	193

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017402.01.T01	Q9SU34	60	95	36	2	37	130	89	182	5.71E-31	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017402.01.T01	A0A2K3LVJ6	81.538	130	22	1	1	130	1	128	3.90e-61	193

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080047910.01	MsG0380017402.01	0.816063	6.706959e-52	4.704191e-49
MsG0080047945.01	MsG0380017402.01	0.801622	8.256399e-49	3.961098e-46
MsG0080047956.01	MsG0380017402.01	0.800158	1.643061e-48	7.596113e-46
MsG0080048036.01	MsG0380017402.01	-0.832812	7.636211e-56	8.630386e-53
MsG0080048059.01	MsG0380017402.01	0.869587	2.769366e-66	1.044855e-62
MsG0080048232.01	MsG0380017402.01	0.805250	1.461415e-49	7.694231e-47
MsG0080048611.01	MsG0380017402.01	0.823594	1.273230e-53	1.101164e-50
MsG0080048813.01	MsG0380017402.01	0.809707	1.656327e-50	9.794744e-48
MsG0080048909.01	MsG0380017402.01	0.817282	3.575484e-52	2.592649e-49
MsG0080048917.01	MsG0380017402.01	0.861835	7.757932e-64	2.224521e-60

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017402.01.T01	MTR_3g106750	95.420	131	3	2	1	130	1	129	2.43e-63	189
MsG0380017402.01.T01	MTR_3g106740	74.615	130	31	2	1	129	1	129	2.14e-56	172
MsG0380017402.01.T01	MTR_1g012690	57.325	157	37	4	1	130	1	154	2.02e-50	157
MsG0380017402.01.T01	MTR_1g012700	56.627	166	34	4	1	130	1	164	2.24e-49	155
MsG0380017402.01.T01	MTR_1g012710	60.784	153	35	3	1	130	1	151	1.04e-44	143
MsG0380017402.01.T01	MTR_1g012630	79.762	84	16	1	47	130	128	210	1.80e-41	137
MsG0380017402.01.T01	MTR_4g108150	50.820	122	56	2	9	130	6	123	6.92e-33	112
MsG0380017402.01.T01	MTR_4g101260	63.095	84	30	1	47	130	50	132	5.06e-31	107
MsG0380017402.01.T01	MTR_4g101330	40.588	170	58	6	1	129	1	168	2.69e-29	104
MsG0380017402.01.T01	MTR_4g101280	56.818	88	36	2	44	130	57	143	1.01e-28	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0380017402.01.T01	AT2G45180	69.048	84	25	1	47	130	52	134	4.36e-34	115
MsG0380017402.01.T01	AT4G12490	60.000	95	36	2	37	130	89	182	5.82e-32	112
MsG0380017402.01.T01	AT4G12500	38.764	178	60	4	1	130	1	177	1.91e-31	110
MsG0380017402.01.T01	AT4G12480	60.920	87	32	2	45	130	83	168	5.47e-31	108
MsG0380017402.01.T01	AT4G12470	58.889	90	35	2	42	130	73	161	8.58e-31	108
MsG0380017402.01.T01	AT5G46900	63.736	91	29	2	40	130	41	127	3.30e-30	105
MsG0380017402.01.T01	AT1G62510	61.176	85	31	2	46	129	66	149	1.61e-29	104
MsG0380017402.01.T01	AT5G46890	61.053	95	33	3	36	130	37	127	1.23e-28	101
MsG0380017402.01.T01	AT1G12090	62.195	82	29	2	49	129	57	137	1.35e-28	102
MsG0380017402.01.T01	AT4G12520	52.893	121	53	3	11	130	12	129	4.95e-28	100

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Find 44 sgRNAs with CRISPR-Local

Find 47 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCACCAAGGATCCAGGTG+AGG	0.645068	3:-95856812	None:intergenic
AAGCCAACACCTTCACCCCA+AGG	0.614009	3:+95856591	MsG0380017402.01.T01:CDS
AAGGAGAGAGAGTACTAAAA+TGG	0.390388	3:-95856508	None:intergenic
AATCAAAGGTTTGGCTGATT+TGG	0.237754	3:+95856719	MsG0380017402.01.T01:CDS
AATTGTTGTGCAATAATCAA+AGG	0.523157	3:+95856705	MsG0380017402.01.T01:CDS
AGCACAAACCCCTAACTTTA+AGG	0.205248	3:-95856631	None:intergenic
AGCACCAAGGATCCAGGTGA+GGG	0.612333	3:-95856811	None:intergenic
AGGATCCAGGTGAGGGTGAT+AGG	0.388310	3:-95856804	None:intergenic
AGGCACATTGAAAACCAGGA+GGG	0.674973	3:-95856848	None:intergenic
ATCACCCTCACCTGGATCCT+TGG	0.406696	3:+95856807	MsG0380017402.01.T01:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAAAGATACCTTAAAGTTAG+GGG	+	Chr3:95856623-95856642	MsG0380017402.01.T01:CDS	30.0%
CCAAAGATACCTTAAAGTTA+GGG	+	Chr3:95856622-95856641	MsG0380017402.01.T01:CDS	30.0%
TAAAATGGTGGCAAAGAATT+TGG	-	Chr3:95856496-95856515	None:intergenic	30.0%
TTGTGCAATAATCAAAGGTT+TGG	+	Chr3:95856710-95856729	MsG0380017402.01.T01:CDS	30.0%
AATCAAAGGTTTGGCTGATT+TGG	+	Chr3:95856719-95856738	MsG0380017402.01.T01:CDS	35.0%
CAGTAAATGTTGAGTAAGCA+AGG	-	Chr3:95856530-95856549	None:intergenic	35.0%
CCCAAAGATACCTTAAAGTT+AGG	+	Chr3:95856621-95856640	MsG0380017402.01.T01:CDS	35.0%
TCAACATTTACTGAGGCTAA+GGG	+	Chr3:95856537-95856556	MsG0380017402.01.T01:CDS	35.0%
TGCTTACTCAACATTTACTG+AGG	+	Chr3:95856530-95856549	MsG0380017402.01.T01:CDS	35.0%
TTGTCTTTGCACTGCAATTA+AGG	+	Chr3:95856752-95856771	MsG0380017402.01.T01:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr3	gene	95856480	95856872	95856480	ID=MsG0380017402.01;Name=MsG0380017402.01
Chr3	mRNA	95856480	95856872	95856480	ID=MsG0380017402.01.T01;Parent=MsG0380017402.01;Name=MsG0380017402.01.T01;_AED=0.49;_eAED=0.49;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|130
Chr3	exon	95856480	95856872	95856480	ID=MsG0380017402.01.T01:exon:4760;Parent=MsG0380017402.01.T01
Chr3	CDS	95856480	95856872	95856480	ID=MsG0380017402.01.T01:cds;Parent=MsG0380017402.01.T01

Gene Sequence

>MsG0380017402.01.T01

ATGGCTTCCAACACCAAATTCTTTGCCACCATTTTAGTACTCTCTCTCCTTGCTTACTCAACATTTACTGAGGCTAAGGGTTCATGCTCACCATCACCAAAGCCAAAGCCAAAGCCAACACCTTCACCCCAAGGTCACTGCCCCAAAGATACCTTAAAGTTAGGGGTTTGTGCTGATGTTTTAGGACTGGTTAATGTTGTTGTTGGGAATCCTGCTTCAGGTAGTAATTGTTGTGCAATAATCAAAGGTTTGGCTGATTTGGATGCTGCACTTTGTCTTTGCACTGCAATTAAGGCCAATGTGCTCGGAATAAACTTGAATGTACCTATCACCCTCACCTGGATCCTTGGTGCTTGTCAAAAAACAATCCCTCCTGGTTTTCAATGTGCCTAA

Protein sequence

>MsG0380017402.01.T01

MASNTKFFATILVLSLLAYSTFTEAKGSCSPSPKPKPKPTPSPQGHCPKDTLKLGVCADVLGLVNVVVGNPASGSNCCAIIKGLADLDAALCLCTAIKANVLGINLNVPITLTWILGACQKTIPPGFQCA*