AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0080048813.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048813.01.T01 MTR_1g030480 73.201 403 40 4 18 371 25 408 0.0 558
MsG0080048813.01.T01 MTR_1g030480 83.607 61 1 2 369 424 475 531 1.35e-22 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0080048813.01.T01 AT1G44446 55.980 393 129 4 18 371 29 416 1.15e-134 396
MsG0080048813.01.T01 AT1G44446 55.980 393 129 4 18 371 29 416 2.06e-134 397
MsG0080048813.01.T01 AT1G44446 69.811 53 15 1 369 420 483 535 3.87e-14 74.7
MsG0080048813.01.T01 AT1G44446 61.783 314 115 2 58 371 6 314 2.60e-123 365
MsG0080048813.01.T01 AT1G44446 64.912 57 11 2 369 420 381 433 3.20e-14 74.7
MsG0080048813.01.T01 AT1G44446 53.444 363 125 4 18 341 29 386 3.70e-112 336

Find 133 sgRNAs with CRISPR-Local

Find 297 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATACAACAATCCCCTTTA+AGG 0.138946 contig45end:+36992 None:intergenic
CGCCGTTGCATGCTCAAATT+AGG 0.153063 contig45end:-41177 MsG0080048813.01.T01:CDS
TGCTTTCTCTGCTGACTTAA+AGG 0.172252 contig45end:-39671 MsG0080048813.01.T01:CDS
ATCCTAATTTAAAGAATTTC+TGG 0.191900 contig45end:-39702 MsG0080048813.01.T01:CDS
AGGAACCATGGGTTATCTTT+AGG 0.213560 contig45end:-39470 MsG0080048813.01.T01:CDS
CAGGGTTTGAAAGGTAAATT+TGG 0.219218 contig45end:-40828 MsG0080048813.01.T01:CDS
ACAGTGTTAAATCCAATTTA+TGG 0.235520 contig45end:-37050 MsG0080048813.01.T01:three_prime_UTR
TACCAGAAATTCTTTAAATT+AGG 0.270588 contig45end:+39700 None:intergenic
TGGTATAACCACACCCTTAA+AGG 0.278106 contig45end:-37006 MsG0080048813.01.T01:three_prime_UTR
GGTTGAACACGGATTACTTT+TGG 0.283837 contig45end:-38869 MsG0080048813.01.T01:CDS
CATCTGGTCTGCAAGGATAT+TGG 0.286825 contig45end:-38208 MsG0080048813.01.T01:CDS
CTTTATTCATTCTCTCTTGT+TGG 0.291005 contig45end:+37418 None:intergenic
CCTTCTTTACTACCTCCTTC+TGG 0.291205 contig45end:-39057 MsG0080048813.01.T01:CDS
CTTAGTGGCGCTTTAGATCT+TGG 0.291618 contig45end:+40738 None:intergenic
AAGATGGTGAAACCATAAAT+TGG 0.296753 contig45end:+37038 None:intergenic
GGAACCATGGGTTATCTTTA+GGG 0.299759 contig45end:-39469 MsG0080048813.01.T01:CDS
TATGGTTTCACCATCTTAGA+TGG 0.312209 contig45end:-37032 MsG0080048813.01.T01:three_prime_UTR
GTCGATTGGCACCATGAAAA+AGG 0.314224 contig45end:-40075 MsG0080048813.01.T01:CDS
AATGTCGAAGTATGAGTAAA+AGG 0.321362 contig45end:+38820 None:intergenic
AAACTCTTGCTTCAGATATA+TGG 0.329301 contig45end:+39911 None:intergenic
ATCTGGTCTGCAAGGATATT+GGG 0.329604 contig45end:-38207 MsG0080048813.01.T01:CDS
AGCAAGAGTTTCTACTGCTT+TGG 0.334343 contig45end:-39899 MsG0080048813.01.T01:CDS
ACATTTAGCATTCGAGTAGA+TGG 0.343874 contig45end:+39162 None:intergenic
ATTCCATTGGGATCTGGAAT+AGG 0.343883 contig45end:+39499 None:intergenic
AACCTTGCATTAGAACTTCA+TGG 0.356961 contig45end:-37193 MsG0080048813.01.T01:three_prime_UTR
AAAGGATCTAGCTGGGTTGC+AGG 0.360380 contig45end:-40057 MsG0080048813.01.T01:CDS
ACAGATTGTCATGGAACTTC+CGG 0.364114 contig45end:-38890 MsG0080048813.01.T01:intron
ACACTGTACACAAATTTAAG+AGG 0.365108 contig45end:+37066 None:intergenic
TTTGGAGTGTTTGCTGTGTT+TGG 0.368010 contig45end:-40810 MsG0080048813.01.T01:CDS
AAGAAAAGCTTAAATGTATC+AGG 0.384915 contig45end:-39742 MsG0080048813.01.T01:CDS
ACTCGCTTACATGGAAGAAT+TGG 0.386034 contig45end:-39872 MsG0080048813.01.T01:CDS
CATACAACAATCCCCTTTAA+GGG 0.387303 contig45end:+36993 None:intergenic
AAGAAGGGATGATCTGGATT+TGG 0.390925 contig45end:-39110 MsG0080048813.01.T01:CDS
CTCATATCAACACAACATTC+CGG 0.391870 contig45end:+37145 None:intergenic
CCAAGCTTGTCATAGGTAAC+TGG 0.395981 contig45end:+37375 None:intergenic
GCCGTTGCATGCTCAAATTA+GGG 0.397525 contig45end:-41176 MsG0080048813.01.T01:intron
GGATCCCTATCCGATTGATA+TGG 0.397893 contig45end:-38186 MsG0080048813.01.T01:CDS
GGTATAACCACACCCTTAAA+GGG 0.399225 contig45end:-37005 MsG0080048813.01.T01:three_prime_UTR
ACGCTTCTTAAGATCCAATA+AGG 0.399633 contig45end:-37247 MsG0080048813.01.T01:three_prime_UTR
TGAATAAAGGTGCAAATGTA+TGG 0.404916 contig45end:-37404 MsG0080048813.01.T01:CDS
GGAGTTTCGACCACCTTGTA+TGG 0.406336 contig45end:-38165 MsG0080048813.01.T01:intron
TTGAGAAAGAAGGGATGATC+TGG 0.411706 contig45end:-39116 MsG0080048813.01.T01:CDS
CTAAGGGATGGAGTGTTCCT+AGG 0.413929 contig45end:-38795 MsG0080048813.01.T01:intron
CCTTACTCCAAGCTTGTCAT+AGG 0.414297 contig45end:+37368 None:intergenic
CAAAACATTCCATTGGGATC+TGG 0.426497 contig45end:+39493 None:intergenic
TTCCATTGGGATCTGGAATA+GGG 0.430317 contig45end:+39500 None:intergenic
TTGGAGGGATGCATTGGAAA+AGG 0.434279 contig45end:-37338 MsG0080048813.01.T01:CDS
TTAATTATTGTGTGTGTTGA+AGG 0.445378 contig45end:+37302 None:intergenic
ACAAGCTTGGAGTAAGGTAT+AGG 0.446291 contig45end:-37362 MsG0080048813.01.T01:CDS
AAAAGTAATCCGTGTTCAAC+CGG 0.447132 contig45end:+38871 None:intergenic
AAGTCAGCAGAGAAAGCAAC+AGG 0.447177 contig45end:+39676 None:intergenic
TTAGGATGGTATGACTGAAC+TGG 0.452128 contig45end:+39718 None:intergenic
GGGTGCGATATTTGATGTAC+AGG 0.456724 contig45end:-40763 MsG0080048813.01.T01:CDS
AGGGGTAAAGATGGCAAACC+TGG 0.457895 contig45end:-39450 MsG0080048813.01.T01:CDS
CCAGAAGGAGGTAGTAAAGA+AGG 0.468373 contig45end:+39057 None:intergenic
CAACAAGAGAGAATGAATAA+AGG 0.472000 contig45end:-37417 MsG0080048813.01.T01:CDS
ATGTCGAAGTATGAGTAAAA+GGG 0.472157 contig45end:+38821 None:intergenic
TCATATCAACACAACATTCC+GGG 0.487652 contig45end:+37146 None:intergenic
ATCCCTTCTTTCTCAAAACA+TGG 0.488856 contig45end:+39123 None:intergenic
GGTTCCTCAAAACATTCCAT+TGG 0.490124 contig45end:+39486 None:intergenic
AACAATCCCCTTTAAGGGTG+TGG 0.490466 contig45end:+36998 None:intergenic
TGCAACGGCGTTAAAACTCT+TGG 0.497032 contig45end:+41190 None:intergenic
GTTATCTTTAGGGGTAAAGA+TGG 0.497489 contig45end:-39459 MsG0080048813.01.T01:CDS
GTTCCTCAAAACATTCCATT+GGG 0.498608 contig45end:+39487 None:intergenic
AGAGCATGTCCCCTTCATCT+TGG 0.499561 contig45end:-39402 MsG0080048813.01.T01:CDS
TTTGGATAAACTCGCTTACA+TGG 0.502971 contig45end:-39881 MsG0080048813.01.T01:CDS
TTCACCATCTTAGATGGTGG+TGG 0.507584 contig45end:-37026 MsG0080048813.01.T01:three_prime_UTR
AGAAATTCTTTAAATTAGGA+TGG 0.513147 contig45end:+39704 None:intergenic
ATAGGCTTGGAGGGATGCAT+TGG 0.515945 contig45end:-37344 MsG0080048813.01.T01:CDS
ACAGATTTATCAGAAGTACT+TGG 0.516953 contig45end:+39790 None:intergenic
GATTGTAACTCAAACCAGTC+AGG 0.519297 contig45end:+36938 None:intergenic
AAACTCCATATCAATCGGAT+AGG 0.523237 contig45end:+38181 None:intergenic
TCATACTTCGACATTTGCTA+AGG 0.523457 contig45end:-38812 MsG0080048813.01.T01:CDS
GGAGTAAGGTATAGGCTTGG+AGG 0.525431 contig45end:-37354 MsG0080048813.01.T01:CDS
TGGAGGGATGCATTGGAAAA+GGG 0.526604 contig45end:-37337 MsG0080048813.01.T01:CDS
GGTCGAAACTCCATATCAAT+CGG 0.530169 contig45end:+38176 None:intergenic
GTTGATTAAGAATTCCTGAC+TGG 0.530223 contig45end:-36952 MsG0080048813.01.T01:three_prime_UTR
AAGAAGGAAGTGATGCTGCT+GGG 0.530413 contig45end:+39073 None:intergenic
TTTCACAAAACAGATTGTCA+TGG 0.531019 contig45end:-38899 MsG0080048813.01.T01:intron
TCTAAAGCGCCACTAAGTAA+AGG 0.531979 contig45end:-40732 MsG0080048813.01.T01:CDS
CATTTACAGAGCCAAGATGA+AGG 0.535455 contig45end:+39391 None:intergenic
AAAGAAGGAAGTGATGCTGC+TGG 0.539768 contig45end:+39072 None:intergenic
CCTATGACAAGCTTGGAGTA+AGG 0.541938 contig45end:-37368 MsG0080048813.01.T01:CDS
GGTTTCACCATCTTAGATGG+TGG 0.543297 contig45end:-37029 MsG0080048813.01.T01:three_prime_UTR
TGGAAGAATTGGTAAATGAC+AGG 0.544909 contig45end:-39861 MsG0080048813.01.T01:CDS
GGGATGATCTGGATTTGGCC+TGG 0.548326 contig45end:-39105 MsG0080048813.01.T01:CDS
CATACTTCGACATTTGCTAA+GGG 0.548563 contig45end:-38811 MsG0080048813.01.T01:CDS
AACTCCATATCAATCGGATA+GGG 0.548896 contig45end:+38182 None:intergenic
CTTCGACATTTGCTAAGGGA+TGG 0.553640 contig45end:-38807 MsG0080048813.01.T01:CDS
ATCAGAAGTACTTGGAGAAG+AGG 0.554772 contig45end:+39798 None:intergenic
CTGTACATACTGAAAGAAGA+AGG 0.555644 contig45end:-39771 MsG0080048813.01.T01:CDS
CCAGTTACCTATGACAAGCT+TGG 0.556416 contig45end:-37375 MsG0080048813.01.T01:CDS
GAGGATCTACGGCTAGTAGT+TGG 0.556957 contig45end:-37441 MsG0080048813.01.T01:CDS
GCTCGTGAATTCAAGTCGAT+TGG 0.558329 contig45end:-40089 MsG0080048813.01.T01:CDS
ATTAGCAGAAGCACACAGAC+AGG 0.563331 contig45end:-40030 MsG0080048813.01.T01:intron
ACATTCCGGGTAGCTTCACT+AGG 0.564312 contig45end:+37159 None:intergenic
TGACTTAAAGGATGATTCCA+TGG 0.565498 contig45end:-39659 MsG0080048813.01.T01:intron
CTTGGAGTAAGGTATAGGCT+TGG 0.569111 contig45end:-37357 MsG0080048813.01.T01:CDS
TATACCACCACCATCTAAGA+TGG 0.570781 contig45end:+37022 None:intergenic
ATTTACAGAGCCAAGATGAA+GGG 0.571447 contig45end:+39392 None:intergenic
AGAAGGAAGTGATGCTGCTG+GGG 0.573018 contig45end:+39074 None:intergenic
GGCTGGGAATATACGACAGA+CGG 0.577816 contig45end:-39200 MsG0080048813.01.T01:CDS
GAGTAAGGTATAGGCTTGGA+GGG 0.585454 contig45end:-37353 MsG0080048813.01.T01:CDS
AGCAGACAAGAAAAGTGCGT+GGG 0.586221 contig45end:-40784 MsG0080048813.01.T01:CDS
TATCCTTGCAGACCAGATGC+CGG 0.588286 contig45end:+38212 None:intergenic
ACTTATTAAATACCTCGGCA+TGG 0.591232 contig45end:+39025 None:intergenic
TTCCCTATTCCAGATCCCAA+TGG 0.592203 contig45end:-39502 MsG0080048813.01.T01:CDS
ATCAACCTAGTGAAGCTACC+CGG 0.595083 contig45end:-37164 MsG0080048813.01.T01:three_prime_UTR
AGCCATGAAGTTCTAATGCA+AGG 0.595362 contig45end:+37191 None:intergenic
GGGCGTGCGCAAGATCCAAA+AGG 0.603628 contig45end:+38842 None:intergenic
GACTTGAATTCACGAGCTAG+AGG 0.604846 contig45end:+40095 None:intergenic
ATGGAACTTCCGGTTGAACA+CGG 0.610594 contig45end:-38880 MsG0080048813.01.T01:CDS
ACACCGGCATCTGGTCTGCA+AGG 0.613320 contig45end:-38215 MsG0080048813.01.T01:CDS
TAATTATTGTGTGTGTTGAA+GGG 0.617559 contig45end:+37303 None:intergenic
TGTTCCTTTGTAGAATGACA+AGG 0.617585 contig45end:-37120 MsG0080048813.01.T01:three_prime_UTR
TTACCCCTAAAGATAACCCA+TGG 0.624924 contig45end:+39465 None:intergenic
TGTCGAAGTATGAGTAAAAG+GGG 0.625361 contig45end:+38822 None:intergenic
ACTTGGAGAAGAGGACGTCT+CGG 0.627193 contig45end:+39807 None:intergenic
TTTACAGAGCCAAGATGAAG+GGG 0.628748 contig45end:+39393 None:intergenic
ACCCTAATTTGAGCATGCAA+CGG 0.631671 contig45end:+41175 None:intergenic
GAACCATGGGTTATCTTTAG+GGG 0.632156 contig45end:-39468 MsG0080048813.01.T01:CDS
ATTGGGATCTGGAATAGGGA+AGG 0.634683 contig45end:+39504 None:intergenic
ATGGTTGATAGAACCATACA+AGG 0.639943 contig45end:+38152 None:intergenic
TGGATTTATAGTCCATGCCG+AGG 0.645907 contig45end:-39037 MsG0080048813.01.T01:intron
GCATGGACTATAAATCCAGA+AGG 0.652893 contig45end:+39042 None:intergenic
GTATAACCACACCCTTAAAG+GGG 0.658662 contig45end:-37004 MsG0080048813.01.T01:three_prime_UTR
GAAGGAAGTGATGCTGCTGG+GGG 0.661858 contig45end:+39075 None:intergenic
ACAACCTTGTCATTCTACAA+AGG 0.662518 contig45end:+37116 None:intergenic
TGGACTATAAATCCAGAAGG+AGG 0.679360 contig45end:+39045 None:intergenic
AAGCAGACAAGAAAAGTGCG+TGG 0.679985 contig45end:-40785 MsG0080048813.01.T01:CDS
AATGACAAGGTTGTACTCTG+AGG 0.680999 contig45end:-37107 MsG0080048813.01.T01:three_prime_UTR
GCAGACAAGAAAAGTGCGTG+GGG 0.696719 contig45end:-40783 MsG0080048813.01.T01:CDS
GTTGATAGAACCATACAAGG+TGG 0.758266 contig45end:+38155 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAGTTTAAATTTAACAA+TGG + contig45end:37171-37190 None:intergenic 10.0%
!! TTATGAAATGATAGATTTAT+AGG - contig45end:39863-39882 MsG0080048813.01.T01:CDS 15.0%
!! AAAGAGAAAAATATCCTTAT+TGG + contig45end:40918-40937 None:intergenic 20.0%
!! ACTATACTTATTAAATACCT+CGG + contig45end:39131-39150 None:intergenic 20.0%
!! AGAAATTCTTTAAATTAGGA+TGG + contig45end:38447-38466 None:intergenic 20.0%
!! ATCCTAATTTAAAGAATTTC+TGG - contig45end:38446-38465 MsG0080048813.01.T01:intron 20.0%
!! ATTGAATCATATCACTTATA+AGG + contig45end:39395-39414 None:intergenic 20.0%
!! TACCAGAAATTCTTTAAATT+AGG + contig45end:38451-38470 None:intergenic 20.0%
!! TCAAATAAGCAAATTAAAAC+AGG + contig45end:39554-39573 None:intergenic 20.0%
!! TCTTAATAATCAGAAACTAT+TGG - contig45end:38007-38026 MsG0080048813.01.T01:intron 20.0%
!! TTCATGTATCATAATAACTT+GGG - contig45end:39527-39546 MsG0080048813.01.T01:CDS 20.0%
!! TTGAATCATATCACTTATAA+GGG + contig45end:39394-39413 None:intergenic 20.0%
!!! ATTTTTCTGAAATCAAGTTA+TGG + contig45end:40519-40538 None:intergenic 20.0%
!!! TTCTTTAGCTTATACTTTTT+TGG - contig45end:37286-37305 MsG0080048813.01.T01:exon 20.0%
! AAACCATACTCTTTCATATA+TGG + contig45end:37262-37281 None:intergenic 25.0%
! AAAGGACTAAAAGCAAAAAA+TGG + contig45end:38584-38603 None:intergenic 25.0%
! AAGAAAAGCTTAAATGTATC+AGG - contig45end:38406-38425 MsG0080048813.01.T01:intron 25.0%
! AATAAGCAGAAAACAACTTA+TGG + contig45end:39646-39665 None:intergenic 25.0%
! ACAGTGTTAAATCCAATTTA+TGG - contig45end:41098-41117 MsG0080048813.01.T01:intron 25.0%
! AGACGACAAATATCTTTAAA+AGG + contig45end:38602-38621 None:intergenic 25.0%
! ATAAGTTAATGAATTACTGC+AGG - contig45end:38213-38232 MsG0080048813.01.T01:CDS 25.0%
! ATGATATTGAGTACTTAGAT+TGG - contig45end:37479-37498 MsG0080048813.01.T01:intron 25.0%
! ATTGTGAATTGACATCAAAA+AGG + contig45end:40230-40249 None:intergenic 25.0%
! CAAAAAATGGTATATTTGCA+AGG + contig45end:38571-38590 None:intergenic 25.0%
! GATTATTAACTACTCAACAT+TGG - contig45end:40454-40473 MsG0080048813.01.T01:intron 25.0%
! GTTCATGTATCATAATAACT+TGG - contig45end:39526-39545 MsG0080048813.01.T01:CDS 25.0%
! TAATTATTGTGTGTGTTGAA+GGG + contig45end:40848-40867 None:intergenic 25.0%
! TCAATATGCGAAAATGAAAT+TGG - contig45end:39410-39429 MsG0080048813.01.T01:CDS 25.0%
! TCAATTCAAACAAACATAGA+TGG + contig45end:37677-37696 None:intergenic 25.0%
! TCATGTATCATAATAACTTG+GGG - contig45end:39528-39547 MsG0080048813.01.T01:CDS 25.0%
! TCTCATAGAAATAAATCTGT+TGG + contig45end:38896-38915 None:intergenic 25.0%
! TGATTATTAAGATAAGCACA+TGG + contig45end:37999-38018 None:intergenic 25.0%
! TGTTGATATTTCCATACTTT+AGG - contig45end:40676-40695 MsG0080048813.01.T01:intron 25.0%
! TTAATTATTGTGTGTGTTGA+AGG + contig45end:40849-40868 None:intergenic 25.0%
! TTGTGAATTGACATCAAAAA+GGG + contig45end:40229-40248 None:intergenic 25.0%
!! AATATTATGTCCTTTTACTC+TGG - contig45end:37041-37060 MsG0080048813.01.T01:three_prime_UTR 25.0%
!! ATCTGTTTTGTGAAAAGATA+CGG + contig45end:39244-39263 None:intergenic 25.0%
!! CTCATTTAAAACCTAAAGTA+TGG + contig45end:40690-40709 None:intergenic 25.0%
!! CTTCAAAAGGAACAAATTTT+GGG - contig45end:40295-40314 MsG0080048813.01.T01:intron 25.0%
!! GATACATTTAAGCTTTTCTT+CGG + contig45end:38406-38425 None:intergenic 25.0%
!!! ATCTTTCTTGTGTTTGTTTT+TGG - contig45end:40601-40620 MsG0080048813.01.T01:intron 25.0%
!!! CATACTTTAGGTTTTAAATG+AGG - contig45end:40688-40707 MsG0080048813.01.T01:intron 25.0%
!!! CTTGTTTTATCTTTTGAAGA+GGG + contig45end:40103-40122 None:intergenic 25.0%
!!! GAACAAATTTTGGGTATTTA+TGG - contig45end:40304-40323 MsG0080048813.01.T01:intron 25.0%
!!! TCTTGTTTTATCTTTTGAAG+AGG + contig45end:40104-40123 None:intergenic 25.0%
AAAATGAGTTACGCTTCAAA+AGG - contig45end:40282-40301 MsG0080048813.01.T01:intron 30.0%
AAACTCTTGCTTCAGATATA+TGG + contig45end:38240-38259 None:intergenic 30.0%
AAACTGAAATTTCCTATGGT+TGG - contig45end:38919-38938 MsG0080048813.01.T01:intron 30.0%
AAGATGGTGAAACCATAAAT+TGG + contig45end:41113-41132 None:intergenic 30.0%
AATGTCGAAGTATGAGTAAA+AGG + contig45end:39331-39350 None:intergenic 30.0%
ACACTGTACACAAATTTAAG+AGG + contig45end:41085-41104 None:intergenic 30.0%
ACAGAAACTGAAATTTCCTA+TGG - contig45end:38915-38934 MsG0080048813.01.T01:intron 30.0%
ATACTCTTTCATATATGGAC+CGG + contig45end:37257-37276 None:intergenic 30.0%
ATATAGGGAGAATACAACAA+CGG + contig45end:37958-37977 None:intergenic 30.0%
ATGTCGAAGTATGAGTAAAA+GGG + contig45end:39330-39349 None:intergenic 30.0%
ATTGCTATATAGAATGTCAC+TGG - contig45end:40123-40142 MsG0080048813.01.T01:intron 30.0%
CAACAAGAGAGAATGAATAA+AGG - contig45end:40731-40750 MsG0080048813.01.T01:CDS 30.0%
CACTAAGTAAAGGAAAAGTT+TGG - contig45end:37426-37445 MsG0080048813.01.T01:CDS 30.0%
CATAGCTTAGAATACCTATT+AGG + contig45end:39158-39177 None:intergenic 30.0%
CTTATTTCCATAAACTCTCT+AGG - contig45end:37791-37810 MsG0080048813.01.T01:intron 30.0%
CTTATTTGAGCTTATTTACC+TGG - contig45end:39565-39584 MsG0080048813.01.T01:intron 30.0%
CTTTATTCATTCTCTCTTGT+TGG + contig45end:40733-40752 None:intergenic 30.0%
GAACTTAGAGAAACGAATTT+CGG - contig45end:36998-37017 MsG0080048813.01.T01:three_prime_UTR 30.0%
GACATATTTGAGCTTATCTA+TGG - contig45end:37695-37714 MsG0080048813.01.T01:intron 30.0%
GATGCTTTATAGCACATATA+GGG + contig45end:37973-37992 None:intergenic 30.0%
GCACATATGATGAATAGTTA+TGG + contig45end:40497-40516 None:intergenic 30.0%
GCACATTACACTTTCTTATA+TGG + contig45end:40414-40433 None:intergenic 30.0%
TAAGTATAGTCTGTCCTAAT+AGG - contig45end:39141-39160 MsG0080048813.01.T01:CDS 30.0%
TAATCAGAAACTATTGGTGT+AGG - contig45end:38013-38032 MsG0080048813.01.T01:intron 30.0%
TATTAAGATAAGCACATGGT+GGG + contig45end:37995-38014 None:intergenic 30.0%
TTATTAAGATAAGCACATGG+TGG + contig45end:37996-38015 None:intergenic 30.0%
TTTCACAAAACAGATTGTCA+TGG - contig45end:39249-39268 MsG0080048813.01.T01:intron 30.0%
! AAAAGGCATATGCTTAAGAA+GGG + contig45end:40158-40177 None:intergenic 30.0%
! AATTAGCTGAAACCTTTTCA+TGG + contig45end:37540-37559 None:intergenic 30.0%
! ATGATATGCTTTTATGATGC+AGG - contig45end:39758-39777 MsG0080048813.01.T01:CDS 30.0%
! CAAACTTTTCCTTTACTTAG+TGG + contig45end:37428-37447 None:intergenic 30.0%
! GAAGTCTTTTTCTTTTGACA+AGG - contig45end:39472-39491 MsG0080048813.01.T01:CDS 30.0%
! GCTTCAAAAGGAACAAATTT+TGG - contig45end:40294-40313 MsG0080048813.01.T01:intron 30.0%
! GGTACTATATAACTTTTGAC+TGG - contig45end:37648-37667 MsG0080048813.01.T01:intron 30.0%
! TAAAAGGCATATGCTTAAGA+AGG + contig45end:40159-40178 None:intergenic 30.0%
! TAAAAGTACACCAGAGTAAA+AGG + contig45end:37054-37073 None:intergenic 30.0%
! TATCTGATTTTCTAACCACT+CGG + contig45end:40391-40410 None:intergenic 30.0%
! TCTGTTTTGTGAAAAGATAC+GGG + contig45end:39243-39262 None:intergenic 30.0%
! TCTTAAGCATATGCCTTTTA+TGG - contig45end:40159-40178 MsG0080048813.01.T01:intron 30.0%
! TGAATAAAGGTGCAAATGTA+TGG - contig45end:40744-40763 MsG0080048813.01.T01:CDS 30.0%
!! ACAGATTTATCAGAAGTACT+TGG + contig45end:38361-38380 None:intergenic 30.0%
!! ATTACTTTTGGACAACCTTT+TGG - contig45end:39291-39310 MsG0080048813.01.T01:intron 30.0%
!!! AGCTTATACTTTTTTGGTTG+TGG - contig45end:37292-37311 MsG0080048813.01.T01:exon 30.0%
!!! AGGTTTTAAATGAGGATCTA+CGG - contig45end:40696-40715 MsG0080048813.01.T01:intron 30.0%
!!! ATTCCATGTTTTGAGAAAGA+AGG - contig45end:39022-39041 MsG0080048813.01.T01:intron 30.0%
!!! CTTTGTGAATTTTTTGACAC+CGG - contig45end:39917-39936 MsG0080048813.01.T01:intron 30.0%
!!! TTCCATGTTTTGAGAAAGAA+GGG - contig45end:39023-39042 MsG0080048813.01.T01:intron 30.0%
!!! TTTTGAAGCGTAACTCATTT+TGG + contig45end:40283-40302 None:intergenic 30.0%
!!! TTTTTGGTTGTGGATTTTCA+GGG - contig45end:37302-37321 MsG0080048813.01.T01:CDS 30.0%
!!! TTTTTTGGTTGTGGATTTTC+AGG - contig45end:37301-37320 MsG0080048813.01.T01:exon 30.0%
AAAAGTAATCCGTGTTCAAC+CGG + contig45end:39280-39299 None:intergenic 35.0%
AAACTCCATATCAATCGGAT+AGG + contig45end:39970-39989 None:intergenic 35.0%
AACACTTCGTACAAAACTGT+AGG + contig45end:37125-37144 None:intergenic 35.0%
AACCTTGCATTAGAACTTCA+TGG - contig45end:40955-40974 MsG0080048813.01.T01:intron 35.0%
AACTCCATATCAATCGGATA+GGG + contig45end:39969-39988 None:intergenic 35.0%
AAGAAAGTTTCTCCTGTGTA+GGG - contig45end:37221-37240 MsG0080048813.01.T01:three_prime_UTR 35.0%
AAGCTATCCTAGAGAGTTTA+TGG + contig45end:37801-37820 None:intergenic 35.0%
AAGCTGTTTATCCAAACAAG+TGG - contig45end:37920-37939 MsG0080048813.01.T01:intron 35.0%
AATAAGCTGAAAGCAGCTTA+TGG + contig45end:37777-37796 None:intergenic 35.0%
ACAACCTTGTCATTCTACAA+AGG + contig45end:41035-41054 None:intergenic 35.0%
ACATTTAGCATTCGAGTAGA+TGG + contig45end:38989-39008 None:intergenic 35.0%
ACGCTTCTTAAGATCCAATA+AGG - contig45end:40901-40920 MsG0080048813.01.T01:intron 35.0%
ACTTATTAAATACCTCGGCA+TGG + contig45end:39126-39145 None:intergenic 35.0%
AGCTGTTTATCCAAACAAGT+GGG - contig45end:37921-37940 MsG0080048813.01.T01:intron 35.0%
ATCCCTTCTTTCTCAAAACA+TGG + contig45end:39028-39047 None:intergenic 35.0%
ATTTACAGAGCCAAGATGAA+GGG + contig45end:38759-38778 None:intergenic 35.0%
ATTTACATAAGCTGCTACCT+TGG + contig45end:39681-39700 None:intergenic 35.0%
ATTTCCTATGGTTGGATATC+AGG - contig45end:38927-38946 MsG0080048813.01.T01:intron 35.0%
CAAACAAGTGGGATAAAGTT+TGG - contig45end:37932-37951 MsG0080048813.01.T01:intron 35.0%
CAAACTTTATCCCACTTGTT+TGG + contig45end:37934-37953 None:intergenic 35.0%
CAATTGATTGTGTTTGAGCA+AGG - contig45end:40246-40265 MsG0080048813.01.T01:intron 35.0%
CAGGGTTTGAAAGGTAAATT+TGG - contig45end:37320-37339 MsG0080048813.01.T01:CDS 35.0%
CATACAACAATCCCCTTTAA+GGG + contig45end:41158-41177 None:intergenic 35.0%
CTCATATCAACACAACATTC+CGG + contig45end:41006-41025 None:intergenic 35.0%
CTCCATAGATGTTCCATAAA+AGG + contig45end:40175-40194 None:intergenic 35.0%
CTGTACATACTGAAAGAAGA+AGG - contig45end:38377-38396 MsG0080048813.01.T01:intron 35.0%
GCGCAAATCAGAAATATCTA+AGG + contig45end:39804-39823 None:intergenic 35.0%
GGATGCTTTATAGCACATAT+AGG + contig45end:37974-37993 None:intergenic 35.0%
GGTATAAACGAAACAAACCT+AGG + contig45end:39373-39392 None:intergenic 35.0%
GGTCCATATATGAAAGAGTA+TGG - contig45end:37256-37275 MsG0080048813.01.T01:three_prime_UTR 35.0%
GTGTTTGAGCAAGGAATAAA+AGG - contig45end:40255-40274 MsG0080048813.01.T01:intron 35.0%
GTTCCTCAAAACATTCCATT+GGG + contig45end:38664-38683 None:intergenic 35.0%
GTTGATTAAGAATTCCTGAC+TGG - contig45end:41196-41215 MsG0080048813.01.T01:CDS 35.0%
GTTGGATCAAATTAGAGACT+TGG - contig45end:37627-37646 MsG0080048813.01.T01:intron 35.0%
TAGTAGTGAGTTACATGACA+TGG - contig45end:38870-38889 MsG0080048813.01.T01:CDS 35.0%
TATGGTTTCACCATCTTAGA+TGG - contig45end:41116-41135 MsG0080048813.01.T01:intron 35.0%
TCATACAACAATCCCCTTTA+AGG + contig45end:41159-41178 None:intergenic 35.0%
TCATATCAACACAACATTCC+GGG + contig45end:41005-41024 None:intergenic 35.0%
TGACTTAAAGGATGATTCCA+TGG - contig45end:38489-38508 MsG0080048813.01.T01:intron 35.0%
TGGAAGAATTGGTAAATGAC+AGG - contig45end:38287-38306 MsG0080048813.01.T01:intron 35.0%
TGTCGAAGTATGAGTAAAAG+GGG + contig45end:39329-39348 None:intergenic 35.0%
TGTTCCTTTGTAGAATGACA+AGG - contig45end:41028-41047 MsG0080048813.01.T01:intron 35.0%
TTATTTCCATGAGTTCTCCA+AGG - contig45end:39661-39680 MsG0080048813.01.T01:CDS 35.0%
TTTGGATAAACTCGCTTACA+TGG - contig45end:38267-38286 MsG0080048813.01.T01:intron 35.0%
! AAAGGCATATGCTTAAGAAG+GGG + contig45end:40157-40176 None:intergenic 35.0%
! CAAATCCGAATTTGAAGCTT+TGG + contig45end:38179-38198 None:intergenic 35.0%
! CATACTTCGACATTTGCTAA+GGG - contig45end:39337-39356 MsG0080048813.01.T01:intron 35.0%
! CTTTTATGGAACATCTATGG+AGG - contig45end:40173-40192 MsG0080048813.01.T01:intron 35.0%
! GAAAGTGTAATGTGCCTAAT+TGG - contig45end:40419-40438 MsG0080048813.01.T01:intron 35.0%
! GTATGGTTCTATCAACCATT+GGG - contig45end:40000-40019 MsG0080048813.01.T01:intron 35.0%
! GTTATCTTTAGGGGTAAAGA+TGG - contig45end:38689-38708 MsG0080048813.01.T01:intron 35.0%
! TCATACTTCGACATTTGCTA+AGG - contig45end:39336-39355 MsG0080048813.01.T01:intron 35.0%
! TGCCTTTTATGGAACATCTA+TGG - contig45end:40170-40189 MsG0080048813.01.T01:intron 35.0%
! TGTATGGTTCTATCAACCAT+TGG - contig45end:39999-40018 MsG0080048813.01.T01:intron 35.0%
!! ATGGTTGATAGAACCATACA+AGG + contig45end:39999-40018 None:intergenic 35.0%
!! CATGTATTTTGAACACATCC+AGG + contig45end:38719-38738 None:intergenic 35.0%
AAGAAGGGATGATCTGGATT+TGG - contig45end:39038-39057 MsG0080048813.01.T01:CDS 40.0%
AAGCCCTTGTGAGACTATTT+GGG - contig45end:37722-37741 MsG0080048813.01.T01:intron 40.0%
AATGACAAGGTTGTACTCTG+AGG - contig45end:41041-41060 MsG0080048813.01.T01:intron 40.0%
ACAAGCTTGGAGTAAGGTAT+AGG - contig45end:40786-40805 MsG0080048813.01.T01:CDS 40.0%
ACAGATTGTCATGGAACTTC+CGG - contig45end:39258-39277 MsG0080048813.01.T01:intron 40.0%
ACCATGAAAAAGGATCTAGC+TGG - contig45end:38083-38102 MsG0080048813.01.T01:intron 40.0%
ACCCTAATTTGAGCATGCAA+CGG + contig45end:36976-36995 None:intergenic 40.0%
ACTCGCTTACATGGAAGAAT+TGG - contig45end:38276-38295 MsG0080048813.01.T01:intron 40.0%
AGCAAGAGTTTCTACTGCTT+TGG - contig45end:38249-38268 MsG0080048813.01.T01:intron 40.0%
AGCCACCAAAGCTTCAAATT+CGG - contig45end:38171-38190 MsG0080048813.01.T01:CDS 40.0%
ATCATGCCTAGCTACTTCTA+TGG + contig45end:37464-37483 None:intergenic 40.0%
ATCTGGTCTGCAAGGATATT+GGG - contig45end:39941-39960 MsG0080048813.01.T01:intron 40.0%
CAAAACATTCCATTGGGATC+TGG + contig45end:38658-38677 None:intergenic 40.0%
CATTTACAGAGCCAAGATGA+AGG + contig45end:38760-38779 None:intergenic 40.0%
CCATGAAAAAGGATCTAGCT+GGG - contig45end:38084-38103 MsG0080048813.01.T01:intron 40.0%
CTACCACGGTTAGTATTCAT+CGG - contig45end:38799-38818 MsG0080048813.01.T01:CDS 40.0%
CTTTGTCCTTTCAATTTCCC+GGG + contig45end:40035-40054 None:intergenic 40.0%
GAAGAAAGTTTCTCCTGTGT+AGG - contig45end:37220-37239 MsG0080048813.01.T01:three_prime_UTR 40.0%
GATGAATACTAACCGTGGTA+GGG + contig45end:38800-38819 None:intergenic 40.0%
GCTTTGTCCTTTCAATTTCC+CGG + contig45end:40036-40055 None:intergenic 40.0%
GGATTGATATCGACATACCA+TGG + contig45end:38509-38528 None:intergenic 40.0%
GGTATAACCACACCCTTAAA+GGG - contig45end:41143-41162 MsG0080048813.01.T01:intron 40.0%
GGTCGAAACTCCATATCAAT+CGG + contig45end:39975-39994 None:intergenic 40.0%
GGTTCCTCAAAACATTCCAT+TGG + contig45end:38665-38684 None:intergenic 40.0%
GTATAACCACACCCTTAAAG+GGG - contig45end:41144-41163 MsG0080048813.01.T01:intron 40.0%
GTCTCTAATTTGATCCAACG+AGG + contig45end:37626-37645 None:intergenic 40.0%
TAAGCCCTTGTGAGACTATT+TGG - contig45end:37721-37740 MsG0080048813.01.T01:intron 40.0%
TATACCACCACCATCTAAGA+TGG + contig45end:41129-41148 None:intergenic 40.0%
TCAGAAACTATTGGTGTAGG+TGG - contig45end:38016-38035 MsG0080048813.01.T01:intron 40.0%
TCTCCATCGAAGAACCAATT+AGG + contig45end:40436-40455 None:intergenic 40.0%
TCTCCCAAATAGTCTCACAA+GGG + contig45end:37728-37747 None:intergenic 40.0%
TGGACTATAAATCCAGAAGG+AGG + contig45end:39106-39125 None:intergenic 40.0%
TGGTATAACCACACCCTTAA+AGG - contig45end:41142-41161 MsG0080048813.01.T01:intron 40.0%
TTACCCCTAAAGATAACCCA+TGG + contig45end:38686-38705 None:intergenic 40.0%
TTAGGATGGTATGACTGAAC+TGG + contig45end:38433-38452 None:intergenic 40.0%
TTCAAGCCATAGAAGTAGCT+AGG - contig45end:37455-37474 MsG0080048813.01.T01:intron 40.0%
TTGAGAAAGAAGGGATGATC+TGG - contig45end:39032-39051 MsG0080048813.01.T01:intron 40.0%
TTTACAGAGCCAAGATGAAG+GGG + contig45end:38758-38777 None:intergenic 40.0%
! AGCCATGAAGTTCTAATGCA+AGG + contig45end:40960-40979 None:intergenic 40.0%
! AGGAACCATGGGTTATCTTT+AGG - contig45end:38678-38697 MsG0080048813.01.T01:intron 40.0%
! ATCCGAATTTGAAGCTTTGG+TGG + contig45end:38176-38195 None:intergenic 40.0%
! ATTCCATTGGGATCTGGAAT+AGG + contig45end:38652-38671 None:intergenic 40.0%
! GAACCATGGGTTATCTTTAG+GGG - contig45end:38680-38699 MsG0080048813.01.T01:intron 40.0%
! GATCCCAATGGAATGTTTTG+AGG - contig45end:38658-38677 MsG0080048813.01.T01:intron 40.0%
! GCATGGACTATAAATCCAGA+AGG + contig45end:39109-39128 None:intergenic 40.0%
! GGAACCATGGGTTATCTTTA+GGG - contig45end:38679-38698 MsG0080048813.01.T01:intron 40.0%
! GTTGATAGAACCATACAAGG+TGG + contig45end:39996-40015 None:intergenic 40.0%
! TAGCTGAAACCTTTTCATGG+AGG + contig45end:37537-37556 None:intergenic 40.0%
! TCTAAAGCGCCACTAAGTAA+AGG - contig45end:37416-37435 MsG0080048813.01.T01:CDS 40.0%
! TTCCATTGGGATCTGGAATA+GGG + contig45end:38651-38670 None:intergenic 40.0%
!! ATCAGAAGTACTTGGAGAAG+AGG + contig45end:38353-38372 None:intergenic 40.0%
!! CATCTTGGCTCTGTAAATGA+GGG - contig45end:38761-38780 MsG0080048813.01.T01:intron 40.0%
!! GGTTGAACACGGATTACTTT+TGG - contig45end:39279-39298 MsG0080048813.01.T01:intron 40.0%
!! GTGGATTTTCAGGGTTTGAA+AGG - contig45end:37311-37330 MsG0080048813.01.T01:CDS 40.0%
!! TCATCTTGGCTCTGTAAATG+AGG - contig45end:38760-38779 MsG0080048813.01.T01:intron 40.0%
!! TGCTTTCTCTGCTGACTTAA+AGG - contig45end:38477-38496 MsG0080048813.01.T01:intron 40.0%
!! TTTGGAGTGTTTGCTGTGTT+TGG - contig45end:37338-37357 MsG0080048813.01.T01:CDS 40.0%
!!! AATTTTTTGACACCGGCATC+TGG - contig45end:39924-39943 MsG0080048813.01.T01:intron 40.0%
!!! GGAATGTTTTGAGGAACCAT+GGG - contig45end:38667-38686 MsG0080048813.01.T01:intron 40.0%
!!! TGGAATGTTTTGAGGAACCA+TGG - contig45end:38666-38685 MsG0080048813.01.T01:intron 40.0%
AAAGAAGGAAGTGATGCTGC+TGG + contig45end:39079-39098 None:intergenic 45.0%
AAGAAGGAAGTGATGCTGCT+GGG + contig45end:39078-39097 None:intergenic 45.0%
AAGTCAGCAGAGAAAGCAAC+AGG + contig45end:38475-38494 None:intergenic 45.0%
AGGGTAAGCAGACATGTAGT+TGG + contig45end:40084-40103 None:intergenic 45.0%
AGTACTTAGATTGGCGAGCT+CGG - contig45end:37488-37507 MsG0080048813.01.T01:intron 45.0%
ATCAACCTAGTGAAGCTACC+CGG - contig45end:40984-41003 MsG0080048813.01.T01:intron 45.0%
ATGGAACTTCCGGTTGAACA+CGG - contig45end:39268-39287 MsG0080048813.01.T01:intron 45.0%
CATCATGCTCCTCCATGAAA+AGG - contig45end:37525-37544 MsG0080048813.01.T01:intron 45.0%
CATCTGGTCTGCAAGGATAT+TGG - contig45end:39940-39959 MsG0080048813.01.T01:intron 45.0%
CCAAGCTTGTCATAGGTAAC+TGG + contig45end:40776-40795 None:intergenic 45.0%
CCAGAAGGAGGTAGTAAAGA+AGG + contig45end:39094-39113 None:intergenic 45.0%
CCAGTTACCTATGACAAGCT+TGG - contig45end:40773-40792 MsG0080048813.01.T01:CDS 45.0%
CCTATGACAAGCTTGGAGTA+AGG - contig45end:40780-40799 MsG0080048813.01.T01:CDS 45.0%
CCTTACTCCAAGCTTGTCAT+AGG + contig45end:40783-40802 None:intergenic 45.0%
CCTTCTTTACTACCTCCTTC+TGG - contig45end:39091-39110 MsG0080048813.01.T01:CDS 45.0%
CGATGAATACTAACCGTGGT+AGG + contig45end:38801-38820 None:intergenic 45.0%
CTATGGTTGGATATCAGGCT+GGG - contig45end:38932-38951 MsG0080048813.01.T01:intron 45.0%
CTCTCCCAAATAGTCTCACA+AGG + contig45end:37729-37748 None:intergenic 45.0%
CTTGGAGTAAGGTATAGGCT+TGG - contig45end:40791-40810 MsG0080048813.01.T01:CDS 45.0%
GACTTGAATTCACGAGCTAG+AGG + contig45end:38056-38075 None:intergenic 45.0%
GAGTAAGGTATAGGCTTGGA+GGG - contig45end:40795-40814 MsG0080048813.01.T01:CDS 45.0%
GCAGGTGTGTTGAACATTCT+TGG + contig45end:40060-40079 None:intergenic 45.0%
GCCGTTGCATGCTCAAATTA+GGG - contig45end:36972-36991 MsG0080048813.01.T01:three_prime_UTR 45.0%
GCTCGTGAATTCAAGTCGAT+TGG - contig45end:38059-38078 MsG0080048813.01.T01:intron 45.0%
GGATCCCTATCCGATTGATA+TGG - contig45end:39962-39981 MsG0080048813.01.T01:intron 45.0%
GGGTGCGATATTTGATGTAC+AGG - contig45end:37385-37404 MsG0080048813.01.T01:CDS 45.0%
GGTTTCACCATCTTAGATGG+TGG - contig45end:41119-41138 MsG0080048813.01.T01:intron 45.0%
GTCGATTGGCACCATGAAAA+AGG - contig45end:38073-38092 MsG0080048813.01.T01:intron 45.0%
GTTCCGATGAATACTAACCG+TGG + contig45end:38805-38824 None:intergenic 45.0%
TAACCACTCGGACAAATCAC+AGG + contig45end:40379-40398 None:intergenic 45.0%
TAAGCACTTGTGGGACTGTT+TGG - contig45end:39590-39609 MsG0080048813.01.T01:intron 45.0%
TACCTGGCATAAGCACTTGT+GGG - contig45end:39581-39600 MsG0080048813.01.T01:intron 45.0%
TGCAACGGCGTTAAAACTCT+TGG + contig45end:36961-36980 None:intergenic 45.0%
TGGAGGGATGCATTGGAAAA+GGG - contig45end:40811-40830 MsG0080048813.01.T01:CDS 45.0%
TGGATTTATAGTCCATGCCG+AGG - contig45end:39111-39130 MsG0080048813.01.T01:CDS 45.0%
TGTGTAGGGTCTACATCTTC+CGG - contig45end:37235-37254 MsG0080048813.01.T01:three_prime_UTR 45.0%
TTACCTGGCATAAGCACTTG+TGG - contig45end:39580-39599 MsG0080048813.01.T01:intron 45.0%
TTCCCTATTCCAGATCCCAA+TGG - contig45end:38646-38665 MsG0080048813.01.T01:intron 45.0%
TTGGAGGGATGCATTGGAAA+AGG - contig45end:40810-40829 MsG0080048813.01.T01:CDS 45.0%
! AACAATCCCCTTTAAGGGTG+TGG + contig45end:41153-41172 None:intergenic 45.0%
! AAGCAGACAAGAAAAGTGCG+TGG - contig45end:37363-37382 MsG0080048813.01.T01:CDS 45.0%
! AGCAGACAAGAAAAGTGCGT+GGG - contig45end:37364-37383 MsG0080048813.01.T01:CDS 45.0%
! ATTAGCAGAAGCACACAGAC+AGG - contig45end:38118-38137 MsG0080048813.01.T01:intron 45.0%
! ATTGGGATCTGGAATAGGGA+AGG + contig45end:38647-38666 None:intergenic 45.0%
! CTTAGTGGCGCTTTAGATCT+TGG + contig45end:37413-37432 None:intergenic 45.0%
! CTTCGACATTTGCTAAGGGA+TGG - contig45end:39341-39360 MsG0080048813.01.T01:intron 45.0%
! GTGCCTAATTGGTTCTTCGA+TGG - contig45end:40430-40449 MsG0080048813.01.T01:intron 45.0%
! TTCACCATCTTAGATGGTGG+TGG - contig45end:41122-41141 MsG0080048813.01.T01:intron 45.0%
!! CCCAGCTAGATCCTTTTTCA+TGG + contig45end:38087-38106 None:intergenic 45.0%
!! CTTTTCATGGAGGAGCATGA+TGG + contig45end:37527-37546 None:intergenic 45.0%
!!! ATGGAGGCATTTTGCAGAAC+AGG - contig45end:40189-40208 MsG0080048813.01.T01:intron 45.0%
!!! AATCATTTTTTTAAATAAAA+AGG + contig45end:38530-38549 None:intergenic 5.0%
AAAGGATCTAGCTGGGTTGC+AGG - contig45end:38091-38110 MsG0080048813.01.T01:intron 50.0%
ACATTCCGGGTAGCTTCACT+AGG + contig45end:40992-41011 None:intergenic 50.0%
ACCATTGGGATTTCGAAGCC+CGG - contig45end:40014-40033 MsG0080048813.01.T01:intron 50.0%
ACTTGGAGAAGAGGACGTCT+CGG + contig45end:38344-38363 None:intergenic 50.0%
AGAAGGAAGTGATGCTGCTG+GGG + contig45end:39077-39096 None:intergenic 50.0%
AGAGCATGTCCCCTTCATCT+TGG - contig45end:38746-38765 MsG0080048813.01.T01:intron 50.0%
AGGGGTAAAGATGGCAAACC+TGG - contig45end:38698-38717 MsG0080048813.01.T01:intron 50.0%
ATAGGCTTGGAGGGATGCAT+TGG - contig45end:40804-40823 MsG0080048813.01.T01:CDS 50.0%
CACTCGGACAAATCACAGGT+TGG + contig45end:40375-40394 None:intergenic 50.0%
CCAGCCTGATATCCAACCAT+AGG + contig45end:38934-38953 None:intergenic 50.0%
CCTATGGTTGGATATCAGGC+TGG - contig45end:38931-38950 MsG0080048813.01.T01:intron 50.0%
CGCCGTTGCATGCTCAAATT+AGG - contig45end:36971-36990 MsG0080048813.01.T01:three_prime_UTR 50.0%
CTGCTACCTTGGAGAACTCA+TGG + contig45end:39670-39689 None:intergenic 50.0%
GAGGATCTACGGCTAGTAGT+TGG - contig45end:40707-40726 MsG0080048813.01.T01:intron 50.0%
GGAAGATGTAGACCCTACAC+AGG + contig45end:37236-37255 None:intergenic 50.0%
GGAGTAAGGTATAGGCTTGG+AGG - contig45end:40794-40813 MsG0080048813.01.T01:CDS 50.0%
GGAGTTTCGACCACCTTGTA+TGG - contig45end:39983-40002 MsG0080048813.01.T01:intron 50.0%
GGCTGGGAATATACGACAGA+CGG - contig45end:38948-38967 MsG0080048813.01.T01:intron 50.0%
TATCCTTGCAGACCAGATGC+CGG + contig45end:39939-39958 None:intergenic 50.0%
TCGAAGCCCGGGAAATTGAA+AGG - contig45end:40026-40045 MsG0080048813.01.T01:intron 50.0%
! AGCAGACATGTAGTTGGTGC+AGG + contig45end:40078-40097 None:intergenic 50.0%
! CAACCTGTGATTTGTCCGAG+TGG - contig45end:40373-40392 MsG0080048813.01.T01:intron 50.0%
! CTAAGGGATGGAGTGTTCCT+AGG - contig45end:39353-39372 MsG0080048813.01.T01:intron 50.0%
! GCAGACAAGAAAAGTGCGTG+GGG - contig45end:37365-37384 MsG0080048813.01.T01:CDS 50.0%
CAGACATGCATGCACCTCGT+TGG - contig45end:37609-37628 MsG0080048813.01.T01:intron 55.0%
CCATTGGGATTTCGAAGCCC+GGG - contig45end:40015-40034 MsG0080048813.01.T01:intron 55.0%
CGTATCGCATGTCCCTACCA+CGG - contig45end:38785-38804 MsG0080048813.01.T01:intron 55.0%
GAAGGAAGTGATGCTGCTGG+GGG + contig45end:39076-39095 None:intergenic 55.0%
GGGATGATCTGGATTTGGCC+TGG - contig45end:39043-39062 MsG0080048813.01.T01:CDS 55.0%
GTCCCACAAGTGCTTATGCC+AGG + contig45end:39586-39605 None:intergenic 55.0%
ACACCGGCATCTGGTCTGCA+AGG - contig45end:39933-39952 MsG0080048813.01.T01:intron 60.0%
CCCGGGCTTCGAAATCCCAA+TGG + contig45end:40018-40037 None:intergenic 60.0%
GGGCGTGCGCAAGATCCAAA+AGG + contig45end:39309-39328 None:intergenic 60.0%
GCTGCTGGGGGATCACTGCC+AGG + contig45end:39064-39083 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
contig45end gene 36940 41230 36940 ID=MsG0080048813.01;Name=MsG0080048813.01
contig45end mRNA 36940 41230 36940 ID=MsG0080048813.01.T01;Parent=MsG0080048813.01;Name=MsG0080048813.01.T01;_AED=0.34;_eAED=0.36;_QI=0|0.37|0.55|1|1|1|9|362|424
contig45end exon 36940 37472 36940 ID=MsG0080048813.01.T01:exon:371;Parent=MsG0080048813.01.T01
contig45end exon 38166 38253 38166 ID=MsG0080048813.01.T01:exon:370;Parent=MsG0080048813.01.T01
contig45end exon 38796 38908 38796 ID=MsG0080048813.01.T01:exon:369;Parent=MsG0080048813.01.T01
contig45end exon 39038 39221 39038 ID=MsG0080048813.01.T01:exon:368;Parent=MsG0080048813.01.T01
contig45end exon 39398 39561 39398 ID=MsG0080048813.01.T01:exon:367;Parent=MsG0080048813.01.T01
contig45end exon 39660 39935 39660 ID=MsG0080048813.01.T01:exon:366;Parent=MsG0080048813.01.T01
contig45end exon 40031 40135 40031 ID=MsG0080048813.01.T01:exon:365;Parent=MsG0080048813.01.T01
contig45end exon 40728 40847 40728 ID=MsG0080048813.01.T01:exon:364;Parent=MsG0080048813.01.T01
contig45end exon 41177 41230 41177 ID=MsG0080048813.01.T01:exon:363;Parent=MsG0080048813.01.T01
contig45end CDS 41177 41230 41177 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 40728 40847 40728 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 40031 40135 40031 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 39660 39935 39660 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 39398 39561 39398 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 39038 39221 39038 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 38796 38908 38796 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 38166 38253 38166 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end CDS 37302 37472 37302 ID=MsG0080048813.01.T01:cds;Parent=MsG0080048813.01.T01
contig45end three_prime_UTR 36940 37301 36940 ID=MsG0080048813.01.T01:three_prime_utr;Parent=MsG0080048813.01.T01
Gene Sequence

>MsG0080048813.01.T01

ATGGATGACAAGTTGTCACCAAGAGTTTTAACGCCGTTGCATGCTCAAATTAGGGGTTTGAAAGGTAAATTTGGAGTGTTTGCTGTGTTTGGAGAAGCAGACAAGAAAAGTGCGTGGGGTGCGATATTTGATGTACAGGATCCAAGATCTAAAGCGCCACTAAGTAAAGGAAAAGTGGTTGAAGTTCTTAATCCTCTAGCTCGTGAATTCAAGTCGATTGGCACCATGAAAAAGGATCTAGCTGGGTTGCAGGACGAATTAGCAGAAGCACACAGACAGGTCCATATATCTGAAGCAAGAGTTTCTACTGCTTTGGATAAACTCGCTTACATGGAAGAATTGGTAAATGACAGGCTATTGCAAGACAGAAGCACAGCTGAAGTTGCCGAGACGTCCTCTTCTCCAAGTACTTCTGATAAATCTGTACATACTGAAAGAAGAAGGAAGCCGAAGAAAAGCTTAAATGTATCAGGTCCAGTTCAGTCATACCATCCTAATTTAAAGAATTTCTGGTATCCTGTTGCTTTCTCTGCTGACTTAAAGGATGATTCCATGATATTTGTCGTCTTGAGTCTCATAAGTGTGTTGCTCCTTCCCTATTCCAGATCCCAATGGAATGTTTTGAGGAACCATGGGTTATCTTTAGGGGTAAAGATGGCAAACCTGGATGTGTTCAAAATACATGTGCACACAGAGCATGTCCCCTTCATCTTGGCTCTGCTGGGAATATACGACAGACGGAAATGCGAGAAAATGCCATCTACTCGAATGCTAAATGTAAAGATAAAGTCAATTCCATGTTTTGAGAAAGAAGGGATGATCTGGATTTGGCCTGGCAGTGATCCCCCAGCAGCATCACTTCCTTCTTTACTACCTCCTTCTGGATTTATAGTCCATGCCGAGATTGTCATGGAACTTCCGGTTGAACACGGATTACTTTTGGACAACCTTTTGGATCTTGCGCACGCCCCTTTTACTCATACTTCGACATTTGCTAAGGGATGGAGTGTTCCTAGCTTTGTGAATTTTTTGACACCGGCATCTGGTCTGCAAGGATATTGGGATCCCTATCCGATTGATATGGAGTTTCGACCACCTTGTATGGTTTTAAATGAGGATCTACGGCTAGTAGTTGGCCAACAAGAGAGAATGAATAAAGGTGCAAATGTATGGAATGTACCAGTTACCTATGACAAGCTTGGAGTAAGGTATAGGCTTGGAGGGATGCATTGGAAAAGGGATAAGCAACTACCCTTCAACACACACAATAATTAA

Protein sequence

>MsG0080048813.01.T01

MDDKLSPRVLTPLHAQIRGLKGKFGVFAVFGEADKKSAWGAIFDVQDPRSKAPLSKGKVVEVLNPLAREFKSIGTMKKDLAGLQDELAEAHRQVHISEARVSTALDKLAYMEELVNDRLLQDRSTAEVAETSSSPSTSDKSVHTERRRKPKKSLNVSGPVQSYHPNLKNFWYPVAFSADLKDDSMIFVVLSLISVLLLPYSRSQWNVLRNHGLSLGVKMANLDVFKIHVHTEHVPFILALLGIYDRRKCEKMPSTRMLNVKIKSIPCFEKEGMIWIWPGSDPPAASLPSLLPPSGFIVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSFVNFLTPASGLQGYWDPYPIDMEFRPPCMVLNEDLRLVVGQQERMNKGANVWNVPVTYDKLGVRYRLGGMHWKRDKQLPFNTHNN*