AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017592.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017592.01.T01 MTR_4g125750 76.623 77 17 1 19 94 123 199 2.11e-32 115
MsG0380017592.01.T01 MTR_6g012560 72.581 62 17 0 63 124 109 170 5.58e-23 90.9
MsG0380017592.01.T01 MTR_2g021870 47.619 84 37 1 62 145 1 77 1.08e-19 78.6
MsG0380017592.01.T01 MTR_6g012540 50.000 56 28 0 70 125 161 216 4.03e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 21 sgRNAs with CRISPR-Local

Find 241 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACATTTATTCCCGAGTAAA+AGG 0.219497 3:+98260308 MsG0380017592.01.T01:CDS
AGAGAGGACAAATGTGTTTA+TGG 0.232453 3:+98260451 MsG0380017592.01.T01:CDS
CGCTTGAATTGCAGAGCTTA+TGG 0.247715 3:+98256197 MsG0380017592.01.T01:CDS
CTTGAAGAATTTATCTGGTT+TGG 0.280583 3:-98260674 None:intergenic
ATCGACTTGAAGAATTTATC+TGG 0.312073 3:-98260679 None:intergenic
AGGGGACATGTGCGTTGTAT+AGG 0.380197 3:+98260341 MsG0380017592.01.T01:CDS
GTCTGAAAATCAAGAATTGA+GGG 0.452871 3:+98260400 MsG0380017592.01.T01:CDS
TGTCTGAAAATCAAGAATTG+AGG 0.457495 3:+98260399 MsG0380017592.01.T01:CDS
GCAGAAACTTCTCAATCGGT+TGG 0.506728 3:+98260257 MsG0380017592.01.T01:CDS
CAGAAACTTCTCAATCGGTT+GGG 0.507662 3:+98260258 MsG0380017592.01.T01:CDS
GGATACAAAGTCATATGCCT+TGG 0.514985 3:+98260279 MsG0380017592.01.T01:CDS
TGAGGCAGAAACTTCTCAAT+CGG 0.526567 3:+98260253 MsG0380017592.01.T01:CDS
GAGTAAAAGGAGCTGAAAAG+AGG 0.564728 3:+98260321 MsG0380017592.01.T01:CDS
ACTAAACAAATATAATAATG+AGG 0.574227 3:+98260235 MsG0380017592.01.T01:CDS
CAGTGATGAAGACGGAAGAG+AGG 0.574395 3:+98260703 MsG0380017592.01.T01:CDS
AGTAAAAGGAGCTGAAAAGA+GGG 0.578637 3:+98260322 MsG0380017592.01.T01:CDS
GAATAAATGTCATTCTTCCA+AGG 0.592306 3:-98260296 None:intergenic
TGGAGTACTAGCACCATCTG+TGG 0.626165 3:-98260654 None:intergenic
AAATGCGAGAAAGTCAAGAG+AGG 0.636328 3:+98260435 MsG0380017592.01.T01:CDS
AGTCGATGCAGTGATGAAGA+CGG 0.639721 3:+98260695 MsG0380017592.01.T01:CDS
GTAAAAGGAGCTGAAAAGAG+GGG 0.685897 3:+98260323 MsG0380017592.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTATTTTTATTTTTAAT+AGG + Chr3:98260631-98260650 MsG0380017592.01.T01:intron 0.0%
!! ATGCAATATTAAAAAATAAA+AGG + Chr3:98256745-98256764 MsG0380017592.01.T01:intron 10.0%
!!! ATTATAAATTGTTTTTATCT+TGG + Chr3:98260729-98260748 MsG0380017592.01.T01:CDS 10.0%
!!! TATATATCTTATAATTTTTC+AGG + Chr3:98260208-98260227 MsG0380017592.01.T01:intron 10.0%
!! AACTTATAAAATTATAGTGT+TGG + Chr3:98258043-98258062 MsG0380017592.01.T01:intron 15.0%
!! AAGAATAAAATATTAGAGAA+TGG - Chr3:98259052-98259071 None:intergenic 15.0%
!! AATTAAATTGGAAATAAATG+TGG + Chr3:98258233-98258252 MsG0380017592.01.T01:intron 15.0%
!! ACAAAAATTCAAAAAAACTT+TGG - Chr3:98257869-98257888 None:intergenic 15.0%
!! ACAAATAAAACAATTGAAAA+GGG - Chr3:98260148-98260167 None:intergenic 15.0%
!! ACTAAACAAATATAATAATG+AGG + Chr3:98260235-98260254 MsG0380017592.01.T01:CDS 15.0%
!! ACTTATAAAATTATAGTGTT+GGG + Chr3:98258044-98258063 MsG0380017592.01.T01:intron 15.0%
!! ACTTATTCAAACTATTTAAA+AGG + Chr3:98257185-98257204 MsG0380017592.01.T01:intron 15.0%
!! ATAAGTTATACAATCAAAAA+AGG - Chr3:98259510-98259529 None:intergenic 15.0%
!! ATATGTTAAATCAATGAAAT+TGG + Chr3:98259539-98259558 MsG0380017592.01.T01:intron 15.0%
!! TAATAAAATTGGCATAAAAT+TGG + Chr3:98256798-98256817 MsG0380017592.01.T01:intron 15.0%
!!! AATTCATTTATTTGTGATTT+TGG + Chr3:98258846-98258865 MsG0380017592.01.T01:intron 15.0%
!!! ATTAAAATAATCTGTCATTT+TGG + Chr3:98257783-98257802 MsG0380017592.01.T01:intron 15.0%
!!! ATTGACATTATTTTGTTATT+TGG + Chr3:98260818-98260837 MsG0380017592.01.T01:three_prime_UTR 15.0%
!!! TTATTCTGTTTTAATTGTTA+TGG + Chr3:98259988-98260007 MsG0380017592.01.T01:intron 15.0%
!!! TTATTTTTATAAGCTATCAT+GGG - Chr3:98257499-98257518 None:intergenic 15.0%
!!! TTTTTCTTTTGTTTCATTTT+TGG - Chr3:98256772-98256791 None:intergenic 15.0%
!!! TTTTTGACAAAATTTAATAG+TGG + Chr3:98258763-98258782 MsG0380017592.01.T01:intron 15.0%
!! AATAAAAATAGCATTTAGAG+TGG - Chr3:98258660-98258679 None:intergenic 20.0%
!! AATCAAACTACTAAATTCTA+AGG - Chr3:98258125-98258144 None:intergenic 20.0%
!! ACAAATAAAAAAATGACATG+TGG + Chr3:98256634-98256653 MsG0380017592.01.T01:intron 20.0%
!! ACCAATAAAAAACACAAAAA+CGG + Chr3:98256846-98256865 MsG0380017592.01.T01:intron 20.0%
!! ACTTATTGAAATAAGCTAAA+AGG - Chr3:98257474-98257493 None:intergenic 20.0%
!! ACTTATTTAATCATTCCAAA+AGG - Chr3:98258013-98258032 None:intergenic 20.0%
!! ATATGAAAATACCTTTGATA+CGG - Chr3:98257838-98257857 None:intergenic 20.0%
!! CACAACAAATATATATAGTT+TGG - Chr3:98258950-98258969 None:intergenic 20.0%
!! CATCATAAAAATCATTCAAA+GGG - Chr3:98259794-98259813 None:intergenic 20.0%
!! CTTATAAAATTATAGTGTTG+GGG + Chr3:98258045-98258064 MsG0380017592.01.T01:intron 20.0%
!! GACAAATAAAACAATTGAAA+AGG - Chr3:98260149-98260168 None:intergenic 20.0%
!! GATAAAAGAAGAATCATTTA+AGG - Chr3:98257759-98257778 None:intergenic 20.0%
!! TATATATTGAGACAAATTGA+AGG + Chr3:98258807-98258826 MsG0380017592.01.T01:intron 20.0%
!!! AAAAATATACAGTTGATTCT+GGG + Chr3:98258560-98258579 MsG0380017592.01.T01:intron 20.0%
!!! AAAGAAGCTTTTAATTTCTT+AGG - Chr3:98260380-98260399 None:intergenic 20.0%
!!! AGAATTGAATTGGTATTTTT+AGG + Chr3:98257365-98257384 MsG0380017592.01.T01:intron 20.0%
!!! GGGAATTTTGTTATTTATAT+TGG + Chr3:98259825-98259844 MsG0380017592.01.T01:intron 20.0%
!!! GTTATTTTTATAAGCTATCA+TGG - Chr3:98257500-98257519 None:intergenic 20.0%
!!! TAAAAATATACAGTTGATTC+TGG + Chr3:98258559-98258578 MsG0380017592.01.T01:intron 20.0%
!!! TATTTTTAGGTCCAAAATTA+GGG + Chr3:98257378-98257397 MsG0380017592.01.T01:intron 20.0%
!!! TTCAAAGGCAATTTTTAAAA+TGG + Chr3:98257138-98257157 MsG0380017592.01.T01:intron 20.0%
!!! TTTTTATCTTGGATATGTTT+AGG + Chr3:98260740-98260759 MsG0380017592.01.T01:CDS 20.0%
! AACAACATACAAAAACTCAT+TGG - Chr3:98258524-98258543 None:intergenic 25.0%
! AAGAATACGAATTCAATACA+CGG - Chr3:98256304-98256323 None:intergenic 25.0%
! AATCATGAAAAAGAAAAGAG+GGG - Chr3:98258917-98258936 None:intergenic 25.0%
! ACAATTAAAACAGAATAAGC+AGG - Chr3:98259986-98260005 None:intergenic 25.0%
! AGAATCATGAAAAAGAAAAG+AGG - Chr3:98258919-98258938 None:intergenic 25.0%
! ATAACTTTGTAACAAACTCT+TGG + Chr3:98256658-98256677 MsG0380017592.01.T01:intron 25.0%
! ATCTATACAAGACCTTAATT+AGG + Chr3:98259001-98259020 MsG0380017592.01.T01:intron 25.0%
! ATGTTGTTATGCAGAAAAAT+AGG + Chr3:98258536-98258555 MsG0380017592.01.T01:intron 25.0%
! ATTTGCAAAATTTACATGCA+AGG - Chr3:98257271-98257290 None:intergenic 25.0%
! CAAGAAAAGAAGAATTGAAT+TGG + Chr3:98257355-98257374 MsG0380017592.01.T01:intron 25.0%
! CTTTACAAATTGAAACATGT+TGG + Chr3:98257970-98257989 MsG0380017592.01.T01:intron 25.0%
! GAATCATGAAAAAGAAAAGA+GGG - Chr3:98258918-98258937 None:intergenic 25.0%
! GATAAACACCTATGTATAAT+CGG - Chr3:98257570-98257589 None:intergenic 25.0%
! GCATCATAAAAATCATTCAA+AGG - Chr3:98259795-98259814 None:intergenic 25.0%
! TAATGAAACCGATTATACAT+AGG + Chr3:98257559-98257578 MsG0380017592.01.T01:intron 25.0%
! TAGGAATAGTAATTATAGGT+TGG + Chr3:98259425-98259444 MsG0380017592.01.T01:intron 25.0%
! TATGAAAATACCTTTGATAC+GGG - Chr3:98257837-98257856 None:intergenic 25.0%
! TATGTTTCATGCTGATAAAT+GGG + Chr3:98258376-98258395 MsG0380017592.01.T01:intron 25.0%
! TCATGTTAAACTAATTGAAG+TGG + Chr3:98259160-98259179 MsG0380017592.01.T01:intron 25.0%
! TTATTCATTCTCTAGTTGAT+AGG + Chr3:98259079-98259098 MsG0380017592.01.T01:intron 25.0%
! TTCTGATTGTGACATAAAAT+TGG + Chr3:98259664-98259683 MsG0380017592.01.T01:intron 25.0%
! TTTGCAAAATTTACATGCAA+GGG - Chr3:98257270-98257289 None:intergenic 25.0%
!! AAAATATACAGTTGATTCTG+GGG + Chr3:98258561-98258580 MsG0380017592.01.T01:intron 25.0%
!! ATTCAATTTTATACAACAGC+CGG - Chr3:98259569-98259588 None:intergenic 25.0%
!! ATTTAATAGTGGAGTTGTAA+TGG + Chr3:98258774-98258793 MsG0380017592.01.T01:intron 25.0%
!! TATTTATATTGGCCTCATTT+CGG + Chr3:98259836-98259855 MsG0380017592.01.T01:intron 25.0%
!! TCATTTATTTGTGATTTTGG+AGG + Chr3:98258849-98258868 MsG0380017592.01.T01:intron 25.0%
!! TTCAATGTGAATTGATGATT+TGG + Chr3:98256374-98256393 MsG0380017592.01.T01:intron 25.0%
!! TTTAATAGTGGAGTTGTAAT+GGG + Chr3:98258775-98258794 MsG0380017592.01.T01:intron 25.0%
!!! AGCTTTTAATTTCTTAGGTT+TGG - Chr3:98260375-98260394 None:intergenic 25.0%
!!! ATGAATTATTTGACTTGAAG+AGG - Chr3:98259144-98259163 None:intergenic 25.0%
!!! GCTGATTTTAAAAAAGAAAG+TGG + Chr3:98258734-98258753 MsG0380017592.01.T01:intron 25.0%
!!! GCTTTTAATTTCTTAGGTTT+GGG - Chr3:98260374-98260393 None:intergenic 25.0%
!!! GTATTTTTAGGTCCAAAATT+AGG + Chr3:98257377-98257396 MsG0380017592.01.T01:intron 25.0%
!!! TACTTTAAAGTACCTCATTT+AGG - Chr3:98256890-98256909 None:intergenic 25.0%
!!! TCCGTTTTTGTGTTTTTTAT+TGG - Chr3:98256850-98256869 None:intergenic 25.0%
!!! TGATGATGGGTAAATTAAAT+TGG + Chr3:98258221-98258240 MsG0380017592.01.T01:intron 25.0%
!!! TGTAGTATCTATTTTTGTGT+TGG + Chr3:98260783-98260802 MsG0380017592.01.T01:exon 25.0%
AAAATCTGCAATTGAAGATG+GGG + Chr3:98258482-98258501 MsG0380017592.01.T01:intron 30.0%
AAATTAGGGTATAACAGTTC+AGG + Chr3:98257392-98257411 MsG0380017592.01.T01:intron 30.0%
AACTGATATATTCGAATGAG+CGG + Chr3:98259921-98259940 MsG0380017592.01.T01:intron 30.0%
AATAAGCAGGATCAAAGTAA+TGG - Chr3:98259973-98259992 None:intergenic 30.0%
AATTAGGGTATAACAGTTCA+GGG + Chr3:98257393-98257412 MsG0380017592.01.T01:intron 30.0%
AATTTACCCATCATCAATCA+AGG - Chr3:98258217-98258236 None:intergenic 30.0%
AGAAAATCTGCAATTGAAGA+TGG + Chr3:98258480-98258499 MsG0380017592.01.T01:intron 30.0%
AGTCATTTCACACGAAATTT+CGG - Chr3:98256924-98256943 None:intergenic 30.0%
AGTGTCTCAAATATGAAGTT+CGG - Chr3:98259279-98259298 None:intergenic 30.0%
ATCAATTCACATTGAATTCC+AGG - Chr3:98256370-98256389 None:intergenic 30.0%
ATCATAGAACAAATCCATTC+GGG - Chr3:98259302-98259321 None:intergenic 30.0%
ATGTTTCATGCTGATAAATG+GGG + Chr3:98258377-98258396 MsG0380017592.01.T01:intron 30.0%
CATCATAGAACAAATCCATT+CGG - Chr3:98259303-98259322 None:intergenic 30.0%
CTGAATTCTTCGATTAACAA+TGG + Chr3:98259380-98259399 MsG0380017592.01.T01:intron 30.0%
CTTGAAGAATTTATCTGGTT+TGG - Chr3:98260677-98260696 None:intergenic 30.0%
GAAAATCTGCAATTGAAGAT+GGG + Chr3:98258481-98258500 MsG0380017592.01.T01:intron 30.0%
GAATAAATGTCATTCTTCCA+AGG - Chr3:98260299-98260318 None:intergenic 30.0%
GACGTAGGAATAGTAATTAT+AGG + Chr3:98259421-98259440 MsG0380017592.01.T01:intron 30.0%
GTATGTTTCATGCTGATAAA+TGG + Chr3:98258375-98258394 MsG0380017592.01.T01:intron 30.0%
GTCACAATCAGAACATAATT+CGG - Chr3:98259657-98259676 None:intergenic 30.0%
GTCTGAAAATCAAGAATTGA+GGG + Chr3:98260400-98260419 MsG0380017592.01.T01:CDS 30.0%
TAACTCGACGAGAATAAATT+TGG + Chr3:98258712-98258731 MsG0380017592.01.T01:intron 30.0%
TCATACCTAACACTTTAAGT+TGG + Chr3:98257727-98257746 MsG0380017592.01.T01:intron 30.0%
TGAACCAGTTTCAATTCTTT+CGG - Chr3:98259614-98259633 None:intergenic 30.0%
TGTCTGAAAATCAAGAATTG+AGG + Chr3:98260399-98260418 MsG0380017592.01.T01:CDS 30.0%
TTAAGCTTTCACTACCAATT+TGG - Chr3:98257634-98257653 None:intergenic 30.0%
TTGTTCTGTAACAATTGTTC+TGG + Chr3:98259707-98259726 MsG0380017592.01.T01:intron 30.0%
TTTGATATGTCTCTGATCAA+TGG - Chr3:98257323-98257342 None:intergenic 30.0%
! AAGTGAAGTGTTTACCAAAT+TGG + Chr3:98257617-98257636 MsG0380017592.01.T01:intron 30.0%
! AGTGTGAATTTGTGAAGTTT+TGG + Chr3:98256344-98256363 MsG0380017592.01.T01:intron 30.0%
! CTCAGATGCAAACTTTAAAA+TGG + Chr3:98256978-98256997 MsG0380017592.01.T01:intron 30.0%
! GAACTGTTATACCCTAATTT+TGG - Chr3:98257392-98257411 None:intergenic 30.0%
! GCATATATTCTTTGACCTTT+TGG + Chr3:98257995-98258014 MsG0380017592.01.T01:intron 30.0%
! TATTTTACAAGCTGCAAAAC+AGG + Chr3:98260526-98260545 MsG0380017592.01.T01:CDS 30.0%
! TGATTTTTATGATGCCATTC+AGG + Chr3:98259800-98259819 MsG0380017592.01.T01:intron 30.0%
! TTCAATTTTATACAACAGCC+GGG - Chr3:98259568-98259587 None:intergenic 30.0%
!! ATCGACTTGAAGAATTTATC+TGG - Chr3:98260682-98260701 None:intergenic 30.0%
!! ATGCTGTGTGTTTTTATTGT+TGG + Chr3:98259873-98259892 MsG0380017592.01.T01:intron 30.0%
!! TATTTTTAATAGGCCACAGA+TGG + Chr3:98260641-98260660 MsG0380017592.01.T01:intron 30.0%
!!! TGATACCAATTTTGAGATTC+TGG + Chr3:98256416-98256435 MsG0380017592.01.T01:intron 30.0%
AAATGACTAAAATGCCCCTA+GGG + Chr3:98256936-98256955 MsG0380017592.01.T01:intron 35.0%
AAGCTCACAAAAGTTAGTTC+AGG - Chr3:98257678-98257697 None:intergenic 35.0%
AAGTGCAAAGAGAGAGTAAT+AGG - Chr3:98259350-98259369 None:intergenic 35.0%
AATCAATGAAATTGGATCCC+CGG + Chr3:98259547-98259566 MsG0380017592.01.T01:intron 35.0%
AGAAAATCTGCAATTGAACG+TGG + Chr3:98258400-98258419 MsG0380017592.01.T01:intron 35.0%
AGAGAGGACAAATGTGTTTA+TGG + Chr3:98260451-98260470 MsG0380017592.01.T01:CDS 35.0%
AGTAAAAGGAGCTGAAAAGA+GGG + Chr3:98260322-98260341 MsG0380017592.01.T01:CDS 35.0%
AGTAATAGGGTGAAAATTGG+AGG - Chr3:98259336-98259355 None:intergenic 35.0%
AGTGCAAAGAGAGAGTAATA+GGG - Chr3:98259349-98259368 None:intergenic 35.0%
ATAACAGTTCAGGGTTAAGA+TGG + Chr3:98257402-98257421 MsG0380017592.01.T01:intron 35.0%
ATCAAAGTAATGGTTGTGGA+TGG - Chr3:98259963-98259982 None:intergenic 35.0%
ATCATCAATCAAGGATCAAC+GGG - Chr3:98258208-98258227 None:intergenic 35.0%
ATCGTTGGATTCTGTTGAAA+TGG + Chr3:98256277-98256296 MsG0380017592.01.T01:intron 35.0%
ATGACCGAAAGAATTGAAAC+TGG + Chr3:98259607-98259626 MsG0380017592.01.T01:intron 35.0%
CATCATCAATCAAGGATCAA+CGG - Chr3:98258209-98258228 None:intergenic 35.0%
CTAAGGATTTCAACTCTTCA+AGG - Chr3:98258108-98258127 None:intergenic 35.0%
CTGACTCAAAATGACTTCAA+AGG + Chr3:98257123-98257142 MsG0380017592.01.T01:intron 35.0%
GAATTGTCCTTGAAGAAGAA+AGG + Chr3:98257908-98257927 MsG0380017592.01.T01:intron 35.0%
GACATTTATTCCCGAGTAAA+AGG + Chr3:98260308-98260327 MsG0380017592.01.T01:CDS 35.0%
GAGAGTAATAGGGTGAAAAT+TGG - Chr3:98259339-98259358 None:intergenic 35.0%
GCATCAATACTCTTCAATCA+TGG - Chr3:98259220-98259239 None:intergenic 35.0%
GTAACAAACTCTTGGACAAA+TGG + Chr3:98256666-98256685 MsG0380017592.01.T01:intron 35.0%
TATTAAGGATCCCGTATCAA+AGG + Chr3:98257824-98257843 MsG0380017592.01.T01:intron 35.0%
TCGTATTCTTGCAAAATCTG+AGG + Chr3:98256314-98256333 MsG0380017592.01.T01:intron 35.0%
TTCAAACTCGTTGAAATCGT+TGG + Chr3:98256262-98256281 MsG0380017592.01.T01:intron 35.0%
TTTCTGATTCTGTTGTGATG+TGG + Chr3:98256548-98256567 MsG0380017592.01.T01:intron 35.0%
! CCAAACCAACTTAAAGTGTT+AGG - Chr3:98257735-98257754 None:intergenic 35.0%
! GAAATAAATGTGGACTGTTG+GGG + Chr3:98258243-98258262 MsG0380017592.01.T01:intron 35.0%
! GGAAATAAATGTGGACTGTT+GGG + Chr3:98258242-98258261 MsG0380017592.01.T01:intron 35.0%
! GTATTGATGCCAAGTGAATT+TGG + Chr3:98259230-98259249 MsG0380017592.01.T01:intron 35.0%
! GTTGATCCTTGATTGATGAT+GGG + Chr3:98258208-98258227 MsG0380017592.01.T01:intron 35.0%
! TCAATTTTATACAACAGCCG+GGG - Chr3:98259567-98259586 None:intergenic 35.0%
! TCTTTTCAGCTCCTTTTACT+CGG - Chr3:98260322-98260341 None:intergenic 35.0%
! TGGAAATAAATGTGGACTGT+TGG + Chr3:98258241-98258260 MsG0380017592.01.T01:intron 35.0%
! TGGTAGTGAAAGCTTAAGAA+TGG + Chr3:98257637-98257656 MsG0380017592.01.T01:intron 35.0%
! TTTTATGATGCCATTCAGGT+GGG + Chr3:98259804-98259823 MsG0380017592.01.T01:intron 35.0%
! TTTTGTGAGCTTGAGCTATT+GGG + Chr3:98257686-98257705 MsG0380017592.01.T01:intron 35.0%
! TTTTTATGATGCCATTCAGG+TGG + Chr3:98259803-98259822 MsG0380017592.01.T01:intron 35.0%
!! CCTAACACTTTAAGTTGGTT+TGG + Chr3:98257732-98257751 MsG0380017592.01.T01:intron 35.0%
!! GTGAATTGATGATTTGGTGT+TGG + Chr3:98256380-98256399 MsG0380017592.01.T01:intron 35.0%
!! GTTGCTCTAGTTCTCTATTA+AGG + Chr3:98257809-98257828 MsG0380017592.01.T01:intron 35.0%
!! TACGGTTTTGATCTGTTTTC+TGG + Chr3:98256501-98256520 MsG0380017592.01.T01:intron 35.0%
!! TTCATTCTCTAGTTGATAGG+TGG + Chr3:98259082-98259101 MsG0380017592.01.T01:intron 35.0%
!! TTGATGATTTGGTGTTGGAT+TGG + Chr3:98256385-98256404 MsG0380017592.01.T01:intron 35.0%
!!! ACCAATTTTGAGATTCTGGA+CGG + Chr3:98256420-98256439 MsG0380017592.01.T01:intron 35.0%
AAAGGACTAAAATGCCCCTA+GGG + Chr3:98257094-98257113 MsG0380017592.01.T01:intron 40.0%
AAATGCGAGAAAGTCAAGAG+AGG + Chr3:98260435-98260454 MsG0380017592.01.T01:CDS 40.0%
AACAAAATTCCCCACCTGAA+TGG - Chr3:98259817-98259836 None:intergenic 40.0%
AAGTACCTCATTTAGGCCAT+TGG - Chr3:98256883-98256902 None:intergenic 40.0%
AATGTGACGCCAAATTCACT+TGG - Chr3:98259242-98259261 None:intergenic 40.0%
ACCGTCCAGAATCTCAAAAT+TGG - Chr3:98256424-98256443 None:intergenic 40.0%
CAGAAACTTCTCAATCGGTT+GGG + Chr3:98260258-98260277 MsG0380017592.01.T01:CDS 40.0%
CAGGATCAAAGTAATGGTTG+TGG - Chr3:98259967-98259986 None:intergenic 40.0%
CGTTGATCCTTGATTGATGA+TGG + Chr3:98258207-98258226 MsG0380017592.01.T01:intron 40.0%
GAAATGACTAAAATGCCCCT+AGG + Chr3:98256935-98256954 MsG0380017592.01.T01:intron 40.0%
GAGGTGAGTGAGTTAATTGA+AGG - Chr3:98259125-98259144 None:intergenic 40.0%
GAGTAAAAGGAGCTGAAAAG+AGG + Chr3:98260321-98260340 MsG0380017592.01.T01:CDS 40.0%
GGATACAAAGTCATATGCCT+TGG + Chr3:98260279-98260298 MsG0380017592.01.T01:CDS 40.0%
GTAAAAGGAGCTGAAAAGAG+GGG + Chr3:98260323-98260342 MsG0380017592.01.T01:CDS 40.0%
TACCCACAAGTCTTAAAGGT+TGG + Chr3:98259026-98259045 MsG0380017592.01.T01:intron 40.0%
TGACAAGACAATCCGAAATG+AGG - Chr3:98259851-98259870 None:intergenic 40.0%
TGAGGCAGAAACTTCTCAAT+CGG + Chr3:98260253-98260272 MsG0380017592.01.T01:CDS 40.0%
TGCTTTCTTCTGATAGACGT+AGG + Chr3:98259406-98259425 MsG0380017592.01.T01:intron 40.0%
TGTGGATGGTCATTCGAATA+GGG - Chr3:98259949-98259968 None:intergenic 40.0%
TTATTTCGTGTTTCCGTGAG+TGG + Chr3:98258675-98258694 MsG0380017592.01.T01:intron 40.0%
TTCCTCTCCTTTCTTCTTCA+AGG - Chr3:98257918-98257937 None:intergenic 40.0%
TTGAAGAAGAAAGGAGAGGA+AGG + Chr3:98257917-98257936 MsG0380017592.01.T01:intron 40.0%
TTGTGGATGGTCATTCGAAT+AGG - Chr3:98259950-98259969 None:intergenic 40.0%
TTTATGATGCCATTCAGGTG+GGG + Chr3:98259805-98259824 MsG0380017592.01.T01:intron 40.0%
! AAGTGATGACTTGTGCAATC+TGG + Chr3:98256611-98256630 MsG0380017592.01.T01:intron 40.0%
! ACAGAGCTTTGACACTTGAA+AGG + Chr3:98257076-98257095 MsG0380017592.01.T01:intron 40.0%
! ACCTGATGACTTGGACAAAA+AGG + Chr3:98256716-98256735 MsG0380017592.01.T01:intron 40.0%
! ATATTTGAGACACTCCCGAA+TGG + Chr3:98259285-98259304 MsG0380017592.01.T01:intron 40.0%
! CTTTTCAGCTCCTTTTACTC+GGG - Chr3:98260321-98260340 None:intergenic 40.0%
! CTTTTGTGAGCTTGAGCTAT+TGG + Chr3:98257685-98257704 MsG0380017592.01.T01:intron 40.0%
! GAGACAAATTGAAGGTGTGA+CGG + Chr3:98258815-98258834 MsG0380017592.01.T01:intron 40.0%
! GATTTCAACGAGTTTGAAGC+AGG - Chr3:98256260-98256279 None:intergenic 40.0%
! GGAATTGTCATTTGAGTGGT+TGG + Chr3:98258066-98258085 MsG0380017592.01.T01:intron 40.0%
! TCCTTTTTGTCCAAGTCATC+AGG - Chr3:98256720-98256739 None:intergenic 40.0%
! TGTCATTTGAGTGGTTGGAA+TGG + Chr3:98258071-98258090 MsG0380017592.01.T01:intron 40.0%
! TTGGGGAATTGTCATTTGAG+TGG + Chr3:98258062-98258081 MsG0380017592.01.T01:intron 40.0%
! TTTGAGATTCTGGACGGTTA+GGG + Chr3:98256426-98256445 MsG0380017592.01.T01:intron 40.0%
!! AACCTTTAAGACTTGTGGGT+AGG - Chr3:98259027-98259046 None:intergenic 40.0%
!! AACGGACTAAAACGAACCAA+TGG + Chr3:98256864-98256883 MsG0380017592.01.T01:intron 40.0%
!! ACGAAGAAAAGTACCACTCA+CGG - Chr3:98258691-98258710 None:intergenic 40.0%
!! ATTTGGTGTTGGATTGGTAC+TGG + Chr3:98256391-98256410 MsG0380017592.01.T01:intron 40.0%
!! GAATTTGTGAAGTTTTGGCC+TGG + Chr3:98256349-98256368 MsG0380017592.01.T01:intron 40.0%
!! GAGCGTTTCAGAGTTTGTTA+CGG + Chr3:98256483-98256502 MsG0380017592.01.T01:intron 40.0%
!! TTTCAGTCGTTTTAGCCCTA+GGG - Chr3:98256954-98256973 None:intergenic 40.0%
!! TTTTCAGTCGTTTTAGCCCT+AGG - Chr3:98256955-98256974 None:intergenic 40.0%
!!! TTTTGAGATTCTGGACGGTT+AGG + Chr3:98256425-98256444 MsG0380017592.01.T01:intron 40.0%
AAGGACTAAAATGCCCCTAG+GGG + Chr3:98257095-98257114 MsG0380017592.01.T01:intron 45.0%
ACGAACCAATGGCCTAAATG+AGG + Chr3:98256875-98256894 MsG0380017592.01.T01:intron 45.0%
AGTCGATGCAGTGATGAAGA+CGG + Chr3:98260695-98260714 MsG0380017592.01.T01:CDS 45.0%
CGCTTGAATTGCAGAGCTTA+TGG + Chr3:98256197-98256216 MsG0380017592.01.T01:CDS 45.0%
CTTGTGGGTAGGCCTAATTA+AGG - Chr3:98259016-98259035 None:intergenic 45.0%
GAAAGGACTAAAATGCCCCT+AGG + Chr3:98257093-98257112 MsG0380017592.01.T01:intron 45.0%
GACTGAGAGACACTTGACAT+AGG + Chr3:98257230-98257249 MsG0380017592.01.T01:intron 45.0%
GCAGAAACTTCTCAATCGGT+TGG + Chr3:98260257-98260276 MsG0380017592.01.T01:CDS 45.0%
GTCCTTGAAGAAGAAAGGAG+AGG + Chr3:98257913-98257932 MsG0380017592.01.T01:intron 45.0%
GTGGATGGTCATTCGAATAG+GGG - Chr3:98259948-98259967 None:intergenic 45.0%
TGTGTACAGACCTGATGACT+TGG + Chr3:98256707-98256726 MsG0380017592.01.T01:intron 45.0%
! TTGAGTCAGTTTTGCCCCTA+GGG - Chr3:98257112-98257131 None:intergenic 45.0%
! TTTGAGTCAGTTTTGCCCCT+AGG - Chr3:98257113-98257132 None:intergenic 45.0%
!! GGCCAACCTTTAAGACTTGT+GGG - Chr3:98259031-98259050 None:intergenic 45.0%
!! TGGCCAACCTTTAAGACTTG+TGG - Chr3:98259032-98259051 None:intergenic 45.0%
!! TTCAGTCGTTTTAGCCCTAG+GGG - Chr3:98256953-98256972 None:intergenic 45.0%
!! AAAAAAAAGAATAATAAAAT+TGG + Chr3:98256787-98256806 MsG0380017592.01.T01:intron 5.0%
AGGGGACATGTGCGTTGTAT+AGG + Chr3:98260341-98260360 MsG0380017592.01.T01:CDS 50.0%
CACGAAATTTCGGCAGAGAG+AGG - Chr3:98256914-98256933 None:intergenic 50.0%
CAGTGATGAAGACGGAAGAG+AGG + Chr3:98260703-98260722 MsG0380017592.01.T01:CDS 50.0%
GCGTCACATTCTGAATGCGA+AGG + Chr3:98259252-98259271 MsG0380017592.01.T01:intron 50.0%
GGCCTACCCACAAGTCTTAA+AGG + Chr3:98259022-98259041 MsG0380017592.01.T01:intron 50.0%
TGATGTGGCACTGTGTGTGT+GGG + Chr3:98256563-98256582 MsG0380017592.01.T01:intron 50.0%
TGTGGGTCTCTGTGATGAGT+TGG + Chr3:98256580-98256599 MsG0380017592.01.T01:intron 50.0%
! TGAGTCAGTTTTGCCCCTAG+GGG - Chr3:98257111-98257130 None:intergenic 50.0%
! TGGAGTACTAGCACCATCTG+TGG - Chr3:98260657-98260676 None:intergenic 50.0%
!! CTCTAGTTGATAGGTGGCTG+AGG + Chr3:98259088-98259107 MsG0380017592.01.T01:intron 50.0%
GTGATGTGGCACTGTGTGTG+TGG + Chr3:98256562-98256581 MsG0380017592.01.T01:intron 55.0%
Chromosome Type Strat End Strand Name
Chr3 gene 98256185 98260891 98256185 ID=MsG0380017592.01;Name=MsG0380017592.01
Chr3 mRNA 98256185 98260891 98256185 ID=MsG0380017592.01.T01;Parent=MsG0380017592.01;Name=MsG0380017592.01.T01;_AED=0.50;_eAED=0.54;_QI=0|0.5|0.33|1|1|1|3|104|168
Chr3 exon 98256185 98256238 98256185 ID=MsG0380017592.01.T01:exon:4088;Parent=MsG0380017592.01.T01
Chr3 exon 98260230 98260547 98260230 ID=MsG0380017592.01.T01:exon:4089;Parent=MsG0380017592.01.T01
Chr3 exon 98260653 98260891 98260653 ID=MsG0380017592.01.T01:exon:4090;Parent=MsG0380017592.01.T01
Chr3 CDS 98256185 98256238 98256185 ID=MsG0380017592.01.T01:cds;Parent=MsG0380017592.01.T01
Chr3 CDS 98260230 98260547 98260230 ID=MsG0380017592.01.T01:cds;Parent=MsG0380017592.01.T01
Chr3 CDS 98260653 98260787 98260653 ID=MsG0380017592.01.T01:cds;Parent=MsG0380017592.01.T01
Chr3 three_prime_UTR 98260788 98260891 98260788 ID=MsG0380017592.01.T01:three_prime_utr;Parent=MsG0380017592.01.T01
Gene Sequence

>MsG0380017592.01.T01

ATGGCGAAATTGCGCTTGAATTGCAGAGCTTATGGATTCGATGATGATGATTTCGAAGAACTAAACAAATATAATAATGAGGCAGAAACTTCTCAATCGGTTGGGATACAAAGTCATATGCCTTGGAAGAATGACATTTATTCCCGAGTAAAAGGAGCTGAAAAGAGGGGACATGTGCGTTGTATAGGCAATATTCCCAAACCTAAGAAATTAAAAGCTTCTTTGTCTGAAAATCAAGAATTGAGGGATGAACTTAAGAAAATGCGAGAAAGTCAAGAGAGGACAAATGTGTTTATGGCAAATATGATGTCAGTGATACAAAATCGATTATCTCAAGAAGATTTGAATGATATTTTACAAGCTGCAAAACAGGCCACAGATGGTGCTAGTACTCCAAACCAGATAAATTCTTCAAGTCGATGCAGTGATGAAGACGGAAGAGAGGAAGATTATAAATTGTTTTTATCTTGGATATGTTTAGGCTCATCTAGTGTTTTTTTGATGTAG
Protein sequence

>MsG0380017592.01.T01

MAKLRLNCRAYGFDDDDFEELNKYNNEAETSQSVGIQSHMPWKNDIYSRVKGAEKRGHVRCIGNIPKPKKLKASLSENQELRDELKKMRESQERTNVFMANMMSVIQNRLSQEDLNDILQAAKQATDGASTPNQINSSSRCSDEDGREEDYKLFLSWICLGSSSVFLM*