AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017665.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017665.01.T01 MTR_3g109760 88.304 342 13 4 1 339 1 318 0.0 538
MsG0380017665.01.T01 MTR_1g006650 51.499 367 115 12 6 339 8 344 6.14e-105 311
MsG0380017665.01.T01 MTR_8g013950 44.959 367 149 14 1 339 1 342 3.96e-79 245
MsG0380017665.01.T01 MTR_8g076340 46.000 200 85 7 109 298 102 288 1.90e-40 144
MsG0380017665.01.T01 MTR_4g071590 34.936 312 144 11 1 297 13 280 6.71e-40 142
MsG0380017665.01.T01 MTR_4g471590 34.936 312 144 11 1 297 13 280 6.71e-40 142
MsG0380017665.01.T01 MTR_3g117380 37.631 287 142 10 19 298 43 299 5.09e-37 135
MsG0380017665.01.T01 MTR_6g032830 37.778 225 89 6 120 294 35 258 2.03e-35 130
MsG0380017665.01.T01 MTR_1g094930 37.872 235 90 7 114 292 72 306 3.60e-35 131
MsG0380017665.01.T01 MTR_7g085410 41.038 212 82 7 120 292 45 252 4.56e-34 126
MsG0380017665.01.T01 MTR_1g094930 57.009 107 44 2 187 292 106 211 9.84e-34 124
MsG0380017665.01.T01 MTR_1g046680 78.873 71 15 0 227 297 171 241 2.96e-33 123
MsG0380017665.01.T01 MTR_5g021340 40.553 217 92 6 115 298 158 370 5.41e-33 126
MsG0380017665.01.T01 MTR_5g007600 76.056 71 17 0 227 297 258 328 2.74e-32 123
MsG0380017665.01.T01 MTR_5g007600 51.200 125 48 3 167 291 109 220 2.30e-29 115
MsG0380017665.01.T01 MTR_1g116010 73.529 68 18 0 225 292 161 228 1.85e-29 113
MsG0380017665.01.T01 MTR_2g094600 75.385 65 16 0 228 292 216 280 4.70e-29 114
MsG0380017665.01.T01 MTR_4g058910 62.963 81 30 0 228 308 314 394 6.13e-29 115
MsG0380017665.01.T01 MTR_7g446110 55.696 79 32 2 217 294 175 251 3.00e-22 94.4
MsG0380017665.01.T01 MTR_7g446070 35.632 174 94 6 117 288 35 192 1.32e-20 88.6
MsG0380017665.01.T01 MTR_7g445950 53.947 76 31 1 213 288 109 180 3.49e-20 87.0
MsG0380017665.01.T01 MTR_7g445980 66.071 56 18 1 232 286 37 92 3.95e-19 81.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017665.01.T01 AT5G25830 46.092 371 124 12 2 339 4 331 6.02e-84 257
MsG0380017665.01.T01 AT4G32890 46.246 333 116 10 30 339 16 308 7.52e-83 254
MsG0380017665.01.T01 AT3G60530 48.454 194 69 4 115 308 72 234 6.01e-50 167
MsG0380017665.01.T01 AT2G45050 48.309 207 71 6 115 308 74 257 5.28e-48 162
MsG0380017665.01.T01 AT4G36240 37.778 270 113 8 32 295 11 231 1.45e-37 135
MsG0380017665.01.T01 AT5G66320 40.254 236 85 5 115 308 108 329 1.62e-35 132
MsG0380017665.01.T01 AT5G66320 40.254 236 85 5 115 308 108 329 1.62e-35 132
MsG0380017665.01.T01 AT3G24050 77.941 68 15 0 227 294 193 260 7.54e-33 123
MsG0380017665.01.T01 AT1G08010 67.073 82 21 1 225 300 217 298 7.95e-32 121
MsG0380017665.01.T01 AT1G08010 67.073 82 21 1 225 300 217 298 7.95e-32 121
MsG0380017665.01.T01 AT1G08010 67.073 82 21 1 225 300 217 298 7.95e-32 121
MsG0380017665.01.T01 AT4G34680 43.478 184 73 7 115 297 96 249 1.15e-31 120
MsG0380017665.01.T01 AT4G34680 43.478 184 73 7 115 297 96 249 1.15e-31 120
MsG0380017665.01.T01 AT3G54810 75.000 68 17 0 228 295 229 296 1.43e-31 121
MsG0380017665.01.T01 AT3G54810 75.000 68 17 0 228 295 229 296 1.43e-31 121
MsG0380017665.01.T01 AT3G51080 73.913 69 18 0 228 296 221 289 6.59e-30 116
MsG0380017665.01.T01 AT1G08000 60.227 88 30 1 225 307 215 302 7.41e-30 116
MsG0380017665.01.T01 AT1G08000 60.227 88 30 1 225 307 215 302 7.41e-30 116
MsG0380017665.01.T01 AT3G45170 62.319 69 26 0 228 296 115 183 8.46e-26 102
MsG0380017665.01.T01 AT2G28340 68.254 63 20 0 230 292 193 255 1.81e-24 101

Find 102 sgRNAs with CRISPR-Local

Find 167 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATGATTCCTCAGCAAATT+TGG 0.139979 3:+99298153 None:intergenic
CACGCATTGCATAGTGTCTT+TGG 0.211564 3:+99297782 None:intergenic
CTACATGAGGTGCGTGAAAT+CGG 0.267854 3:+99297526 None:intergenic
ACAGTTGATATCTGGATTAA+AGG 0.306992 3:-99298107 MsG0380017665.01.T01:CDS
AAGGGCCGTCGGCAGAATTC+TGG 0.309787 3:+99299761 None:intergenic
CACAAGCTACAGTTGATATC+TGG 0.314052 3:-99298115 MsG0380017665.01.T01:CDS
CATAGTGTCTTTGGGCCTAA+TGG 0.325824 3:+99297791 None:intergenic
CAGTGGCGCACCGGGCCATT+AGG 0.349868 3:-99297806 MsG0380017665.01.T01:CDS
CACGTGTGCCTCCATGCAAC+TGG 0.370780 3:-99297991 MsG0380017665.01.T01:CDS
GGGCCCTCATCATCTCCTTC+TGG 0.374473 3:+99297645 None:intergenic
ATTGTGGACAGAAGCTGGTT+TGG 0.397002 3:+99299983 None:intergenic
ACGCATTGCATAGTGTCTTT+GGG 0.408202 3:+99297783 None:intergenic
TTGCAACAATTGGTGTTGTT+GGG 0.408578 3:+99297625 None:intergenic
GTTGCAACAATTGGTGTTGT+TGG 0.409369 3:+99297624 None:intergenic
GACACTTGAGGGTGTATTGT+TGG 0.425894 3:+99298043 None:intergenic
TGCTTAGTCAACACAAATGT+TGG 0.431309 3:+99297704 None:intergenic
CATCACAGCATTATGTTTGA+AGG 0.433831 3:-99297593 MsG0380017665.01.T01:CDS
TCTCTTTGATTTCTCTAATG+AGG 0.434233 3:-99299896 MsG0380017665.01.T01:CDS
CGGCAAAAGCCCGTAGTAAA+CGG 0.443499 3:-99298015 MsG0380017665.01.T01:CDS
TTCGAAAGTGGGGTCTTCAA+TGG 0.445894 3:+99299867 None:intergenic
TACATGAGGTGCGTGAAATC+GGG 0.448275 3:+99297527 None:intergenic
TTGCACCTTTCGATGTGAGT+TGG 0.456005 3:+99297679 None:intergenic
TAACCGGTGCCCCGGGGCAT+TGG 0.458807 3:-99299304 MsG0380017665.01.T01:CDS
CTCCGGCGAACTCTCCGTTC+CGG 0.462198 3:-99299737 MsG0380017665.01.T01:intron
ACGGAGAGTTCGCCGGAGAA+AGG 0.464710 3:+99299742 None:intergenic
GTGGTGGTGGTGGTCGTGGT+TGG 0.465201 3:+99297944 None:intergenic
GTTTGTGGTGGAATTGTTGT+CGG 0.468374 3:+99299960 None:intergenic
TTGCCGGGACAGACACTTGA+GGG 0.471708 3:+99298032 None:intergenic
ACAAATGTTGGGCTTGCTGC+AGG 0.475199 3:+99297716 None:intergenic
ATGATCTTGCGCAGCTAGAA+TGG 0.476849 3:-99298180 MsG0380017665.01.T01:CDS
TCATCATCTCCTTCTGGCGT+CGG 0.486176 3:+99297651 None:intergenic
CGGAGAGTTCGCCGGAGAAA+GGG 0.487872 3:+99299743 None:intergenic
AGATGTGGTGGTGGTGGTCG+TGG 0.490069 3:+99297940 None:intergenic
TAACCAATGCCCCGGGGCAC+CGG 0.491962 3:+99299301 None:intergenic
AGAATGTTAACCGGTGCCCC+GGG 0.494076 3:-99299311 MsG0380017665.01.T01:CDS
GAGAATGTTAACCGGTGCCC+CGG 0.494202 3:-99299312 MsG0380017665.01.T01:CDS
GCTTAGTCAACACAAATGTT+GGG 0.498811 3:+99297705 None:intergenic
AGCAGTGTTTACATTGTTTG+TGG 0.499828 3:+99299945 None:intergenic
TCTGCCGACGGCCCTTTCTC+CGG 0.501462 3:-99299754 MsG0380017665.01.T01:CDS
AGCTGCTTAACCAATGCCCC+GGG 0.503896 3:+99299294 None:intergenic
GTGGAATTGTTGTCGGATTG+TGG 0.509048 3:+99299967 None:intergenic
AGGAGGAGATTCTTCGAAAG+TGG 0.514544 3:+99299855 None:intergenic
GATGTTGTAGTTGCAACAAT+TGG 0.517809 3:+99297615 None:intergenic
ACACTTGAGGGTGTATTGTT+GGG 0.518688 3:+99298044 None:intergenic
AGACTCCACAGTGGCGCACC+GGG 0.518894 3:-99297814 MsG0380017665.01.T01:CDS
AAGACTCCACAGTGGCGCAC+CGG 0.525177 3:-99297815 MsG0380017665.01.T01:CDS
TGTCTTTGGGCCTAATGGCC+CGG 0.529224 3:+99297796 None:intergenic
GAATCATTAGAGTTGGTAGG+AGG 0.531077 3:+99299838 None:intergenic
GCAAGAGCTCCGACGCCAGA+AGG 0.533988 3:-99297660 MsG0380017665.01.T01:CDS
GTCGGATTGTGGACAGAAGC+TGG 0.535564 3:+99299978 None:intergenic
GGAGAATCATTAGAGTTGGT+AGG 0.541668 3:+99299835 None:intergenic
TAGCTGCTTAACCAATGCCC+CGG 0.543585 3:+99299293 None:intergenic
AGGAGGAGAATCATTAGAGT+TGG 0.548174 3:+99299831 None:intergenic
AATGGCCCGGTGCGCCACTG+TGG 0.562645 3:+99297809 None:intergenic
GTCGACTCGTACCTGAGTAT+AGG 0.562857 3:-99297739 MsG0380017665.01.T01:CDS
CACACGTGACCGTTTACTAC+GGG 0.563431 3:+99298006 None:intergenic
GGAGGAGATTCTTCGAAAGT+GGG 0.565310 3:+99299856 None:intergenic
TGTGGAGTCAGATACAAGTC+AGG 0.567755 3:-99297761 MsG0380017665.01.T01:CDS
TACCGGAACGGAGAGTTCGC+CGG 0.569597 3:+99299735 None:intergenic
GACGCCAGAAGGAGATGATG+AGG 0.570929 3:-99297649 MsG0380017665.01.T01:CDS
GTGAGAAGATGTGGTGGTGG+TGG 0.576607 3:+99297934 None:intergenic
GAAGTGGGATTGATTTCAAG+AGG 0.577002 3:+99299811 None:intergenic
AGAGATCTTCAACGATGAAG+TGG 0.579783 3:+99299914 None:intergenic
GCACACGTGACCGTTTACTA+CGG 0.581455 3:+99298005 None:intergenic
AGGCGCGAAGTCCAGTTGCA+TGG 0.582876 3:+99297980 None:intergenic
GACCTCGGTGATGGAGGAGA+GGG 0.591558 3:-99297866 MsG0380017665.01.T01:CDS
TTTGCCGGGACAGACACTTG+AGG 0.592935 3:+99298031 None:intergenic
ACACCCTCAAGTGTCTGTCC+CGG 0.593472 3:-99298035 MsG0380017665.01.T01:CDS
AAAAGAGACCTCGGTGATGG+AGG 0.595010 3:-99297872 MsG0380017665.01.T01:CDS
ATTGGTTAAGCAGCTAAAAG+AGG 0.595590 3:-99299286 MsG0380017665.01.T01:intron
AATCAAGTAATCATCACCGT+TGG 0.595692 3:+99297565 None:intergenic
AGAGTGAGAAGATGTGGTGG+TGG 0.596239 3:+99297931 None:intergenic
GTGGGATTGATTTCAAGAGG+AGG 0.599204 3:+99299814 None:intergenic
AAGTAATCATCACCGTTGGA+TGG 0.601160 3:+99297569 None:intergenic
TATAATGGCACGTACCGGAA+CGG 0.606350 3:+99299723 None:intergenic
ACGCCAGAAGGAGATGATGA+GGG 0.609091 3:-99297648 MsG0380017665.01.T01:CDS
AGACCTCGGTGATGGAGGAG+AGG 0.609530 3:-99297867 MsG0380017665.01.T01:CDS
TTCGCCGGAGAAAGGGCCGT+CGG 0.611125 3:+99299750 None:intergenic
GCACTCCAACTCACATCGAA+AGG 0.612333 3:-99297684 MsG0380017665.01.T01:CDS
ATATCAACTGTAGCTTGTGA+AGG 0.612435 3:+99298119 None:intergenic
AGTGTTTACATTGTTTGTGG+TGG 0.618078 3:+99299948 None:intergenic
CTTGCTGCAGGCCTATACTC+AGG 0.624212 3:+99297728 None:intergenic
ATCTTCAACGATGAAGTGGT+CGG 0.624703 3:+99299918 None:intergenic
ATCTTCTCACTCTGACACCA+TGG 0.629511 3:-99297921 MsG0380017665.01.T01:CDS
TCGTGCCAGAATTCTGCCGA+CGG 0.642132 3:-99299766 MsG0380017665.01.T01:CDS
GTCAGAGTGAGAAGATGTGG+TGG 0.644152 3:+99297928 None:intergenic
ATGTTTGAAGGACCATCCAA+CGG 0.648434 3:-99297581 MsG0380017665.01.T01:CDS
CCAAAGCACCGTACTACATG+AGG 0.651273 3:+99297513 None:intergenic
CCACTGTGGAGTCTTATCAG+TGG 0.652363 3:+99297823 None:intergenic
ATGGATGTCCAAATTTGCTG+AGG 0.653086 3:-99298161 MsG0380017665.01.T01:CDS
TGGTTGGAGAGAGAACTAGA+AGG 0.657111 3:+99297960 None:intergenic
CGCGAAGTCCAGTTGCATGG+AGG 0.662375 3:+99297983 None:intergenic
TACTTGATTCATCAACACGT+GGG 0.667702 3:-99297551 MsG0380017665.01.T01:CDS
GGTGTCAGAGTGAGAAGATG+TGG 0.671117 3:+99297925 None:intergenic
AAGACACTATGCAATGCGTG+TGG 0.676419 3:-99297779 MsG0380017665.01.T01:CDS
TTACTTGATTCATCAACACG+TGG 0.680358 3:-99297552 MsG0380017665.01.T01:CDS
GAGGAGATTCTTCGAAAGTG+GGG 0.692052 3:+99299857 None:intergenic
GAATGTTAACCGGTGCCCCG+GGG 0.711444 3:-99299310 MsG0380017665.01.T01:CDS
GACCCTCTCCTCCATCACCG+AGG 0.717630 3:+99297864 None:intergenic
GCTGCTTAACCAATGCCCCG+GGG 0.740450 3:+99299295 None:intergenic
ATTCTGGCACGAATTGACGT+CGG 0.752925 3:+99299777 None:intergenic
CCACTGATAAGACTCCACAG+TGG 0.837860 3:-99297823 MsG0380017665.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAGTTAAAAAAAAATATAG+GGG + Chr3:99298778-99298797 None:intergenic 10.0%
!! CTATAGTTAAAAAAAAATAT+AGG + Chr3:99298780-99298799 None:intergenic 10.0%
!! TATTATTTATATACAACAAT+TGG - Chr3:99297902-99297921 MsG0380017665.01.T01:CDS 10.0%
!! AGAAAATACATAACATAATA+TGG - Chr3:99299237-99299256 MsG0380017665.01.T01:intron 15.0%
!! ATATAAAGTAAGAATTCTAA+TGG - Chr3:99299083-99299102 MsG0380017665.01.T01:intron 15.0%
!! ATATTTGTAATAAAAGCTAA+GGG + Chr3:99298826-99298845 None:intergenic 15.0%
!! TAGTTAAAAAAAAATATAGG+GGG + Chr3:99298777-99298796 None:intergenic 15.0%
!! TATATTTGTAATAAAAGCTA+AGG + Chr3:99298827-99298846 None:intergenic 15.0%
!!! AAATAAAGAGAGTATTATTT+AGG + Chr3:99297979-99297998 None:intergenic 15.0%
!!! ATTATGTTATGTATTTTCTA+AGG + Chr3:99299236-99299255 None:intergenic 15.0%
!!! TATTATTTTTGTTTAGAGAA+GGG + Chr3:99298865-99298884 None:intergenic 15.0%
!!! TCATTTTTAAGATACTATAT+CGG + Chr3:99299056-99299075 None:intergenic 15.0%
!!! TCTTAAGATATACTTTTTTT+AGG + Chr3:99299016-99299035 None:intergenic 15.0%
!!! TTATTATTTTTGTTTAGAGA+AGG + Chr3:99298866-99298885 None:intergenic 15.0%
!! GTGTGACAAAATTAAAAATA+GGG + Chr3:99298390-99298409 None:intergenic 20.0%
!! TCTTAAGACAACAATTAAAA+AGG - Chr3:99299028-99299047 MsG0380017665.01.T01:intron 20.0%
!! TGTGTGACAAAATTAAAAAT+AGG + Chr3:99298391-99298410 None:intergenic 20.0%
!! TTTCATAAGTATGACAATTA+TGG + Chr3:99298168-99298187 None:intergenic 20.0%
! AATGGAACAGATAAAATTGT+AGG + Chr3:99297942-99297961 None:intergenic 25.0%
! ATAAGAAAATGTGAGGTATA+TGG - Chr3:99298486-99298505 MsG0380017665.01.T01:intron 25.0%
! CAAAAGTAGAAAAATTGTCT+TGG + Chr3:99298328-99298347 None:intergenic 25.0%
! CACACATATTAAAGAAAAGT+AGG + Chr3:99298090-99298109 None:intergenic 25.0%
! TAAGAAAATGTGAGGTATAT+GGG - Chr3:99298487-99298506 MsG0380017665.01.T01:intron 25.0%
!! CAAGACAATTTTTCTACTTT+TGG - Chr3:99298326-99298345 MsG0380017665.01.T01:intron 25.0%
!! GAGTGAATTTTGAATTTCAA+GGG - Chr3:99298517-99298536 MsG0380017665.01.T01:intron 25.0%
!!! ATAGTCTTTTATTTAGTCGT+GGG - Chr3:99298461-99298480 MsG0380017665.01.T01:intron 25.0%
!!! GTTTTTGATTCAACGTTATT+TGG + Chr3:99299450-99299469 None:intergenic 25.0%
!!! TATAGTCTTTTATTTAGTCG+TGG - Chr3:99298460-99298479 MsG0380017665.01.T01:intron 25.0%
!!! TTTTTAAGGAGAATGTTAAC+CGG - Chr3:99298209-99298228 MsG0380017665.01.T01:intron 25.0%
AAATGATTCCTCAGCAAATT+TGG + Chr3:99299379-99299398 None:intergenic 30.0%
ATATATATAATGGCACGTAC+CGG + Chr3:99297814-99297833 None:intergenic 30.0%
ATCTGTTCCATTGAATTTGA+GGG - Chr3:99297950-99297969 MsG0380017665.01.T01:CDS 30.0%
TATCTGTTCCATTGAATTTG+AGG - Chr3:99297949-99297968 MsG0380017665.01.T01:CDS 30.0%
! ACAGTTGATATCTGGATTAA+AGG - Chr3:99299422-99299441 MsG0380017665.01.T01:intron 30.0%
! GGAGTGAATTTTGAATTTCA+AGG - Chr3:99298516-99298535 MsG0380017665.01.T01:intron 30.0%
! TCTCTTTGATTTCTCTAATG+AGG - Chr3:99297633-99297652 MsG0380017665.01.T01:CDS 30.0%
AATCAAGTAATCATCACCGT+TGG + Chr3:99299967-99299986 None:intergenic 35.0%
AGCAGTGTTTACATTGTTTG+TGG + Chr3:99297587-99297606 None:intergenic 35.0%
AGTGTTTACATTGTTTGTGG+TGG + Chr3:99297584-99297603 None:intergenic 35.0%
ATTGACGTCGGTGAAAAAAT+TGG + Chr3:99297743-99297762 None:intergenic 35.0%
ATTGGTTAAGCAGCTAAAAG+AGG - Chr3:99298243-99298262 MsG0380017665.01.T01:intron 35.0%
CATCACAGCATTATGTTTGA+AGG - Chr3:99299936-99299955 MsG0380017665.01.T01:CDS 35.0%
GATGTTGTAGTTGCAACAAT+TGG + Chr3:99299917-99299936 None:intergenic 35.0%
GCTTAGTCAACACAAATGTT+GGG + Chr3:99299827-99299846 None:intergenic 35.0%
GTGGGAAATAAGAAAATGTG+AGG - Chr3:99298479-99298498 MsG0380017665.01.T01:intron 35.0%
TACTTGATTCATCAACACGT+GGG - Chr3:99299978-99299997 MsG0380017665.01.T01:CDS 35.0%
TAGGTTTCCCTCAAATTCAA+TGG + Chr3:99297960-99297979 None:intergenic 35.0%
TCGGTGAAAAAATTGGAAGT+GGG + Chr3:99297736-99297755 None:intergenic 35.0%
TGCTTAGTCAACACAAATGT+TGG + Chr3:99299828-99299847 None:intergenic 35.0%
TTACTTGATTCATCAACACG+TGG - Chr3:99299977-99299996 MsG0380017665.01.T01:CDS 35.0%
TTGACTCAACATGTGTAGTT+AGG - Chr3:99297868-99297887 MsG0380017665.01.T01:CDS 35.0%
! ATATCAACTGTAGCTTGTGA+AGG + Chr3:99299413-99299432 None:intergenic 35.0%
!! TTGCAACAATTGGTGTTGTT+GGG + Chr3:99299907-99299926 None:intergenic 35.0%
!!! TGAGGAATCATTTTCAAGTG+AGG - Chr3:99299386-99299405 MsG0380017665.01.T01:intron 35.0%
AAGTAATCATCACCGTTGGA+TGG + Chr3:99299963-99299982 None:intergenic 40.0%
ACGCATTGCATAGTGTCTTT+GGG + Chr3:99299749-99299768 None:intergenic 40.0%
AGAGATCTTCAACGATGAAG+TGG + Chr3:99297618-99297637 None:intergenic 40.0%
AGGAGGAGAATCATTAGAGT+TGG + Chr3:99297701-99297720 None:intergenic 40.0%
ATATCTTATGTTCGCCGTGT+AGG + Chr3:99299195-99299214 None:intergenic 40.0%
ATCTTCAACGATGAAGTGGT+CGG + Chr3:99297614-99297633 None:intergenic 40.0%
ATGTGAGGTATATGGGATAG+AGG - Chr3:99298494-99298513 MsG0380017665.01.T01:intron 40.0%
ATGTTTGAAGGACCATCCAA+CGG - Chr3:99299948-99299967 MsG0380017665.01.T01:CDS 40.0%
CCTTATGATACACACCTACA+CGG - Chr3:99299178-99299197 MsG0380017665.01.T01:intron 40.0%
GTCGGTGAAAAAATTGGAAG+TGG + Chr3:99297737-99297756 None:intergenic 40.0%
TCTCCAAGAAAAAGAGACCT+CGG - Chr3:99299648-99299667 MsG0380017665.01.T01:intron 40.0%
TGTGAGGTATATGGGATAGA+GGG - Chr3:99298495-99298514 MsG0380017665.01.T01:intron 40.0%
! ACACTTGAGGGTGTATTGTT+GGG + Chr3:99299488-99299507 None:intergenic 40.0%
! AGGTCTCTTTTTCTTGGAGA+GGG + Chr3:99299648-99299667 None:intergenic 40.0%
! CACAAGCTACAGTTGATATC+TGG - Chr3:99299414-99299433 MsG0380017665.01.T01:intron 40.0%
! GAAGTGGGATTGATTTCAAG+AGG + Chr3:99297721-99297740 None:intergenic 40.0%
! GGAGAATCATTAGAGTTGGT+AGG + Chr3:99297697-99297716 None:intergenic 40.0%
! GTTTGTGGTGGAATTGTTGT+CGG + Chr3:99297572-99297591 None:intergenic 40.0%
!! ATGGATGTCCAAATTTGCTG+AGG - Chr3:99299368-99299387 MsG0380017665.01.T01:intron 40.0%
!! GAATCATTAGAGTTGGTAGG+AGG + Chr3:99297694-99297713 None:intergenic 40.0%
!! GTTGCAACAATTGGTGTTGT+TGG + Chr3:99299908-99299927 None:intergenic 40.0%
!!! TTTCTTGGAGAGGGCTTTTT+TGG + Chr3:99299639-99299658 None:intergenic 40.0%
AAGACACTATGCAATGCGTG+TGG - Chr3:99299750-99299769 MsG0380017665.01.T01:CDS 45.0%
AGAAAAAGAGACCTCGGTGA+TGG - Chr3:99299654-99299673 MsG0380017665.01.T01:intron 45.0%
AGGAGGAGATTCTTCGAAAG+TGG + Chr3:99297677-99297696 None:intergenic 45.0%
ATCTTCTCACTCTGACACCA+TGG - Chr3:99299608-99299627 MsG0380017665.01.T01:intron 45.0%
ATGATCTTGCGCAGCTAGAA+TGG - Chr3:99299349-99299368 MsG0380017665.01.T01:intron 45.0%
ATTCTGGCACGAATTGACGT+CGG + Chr3:99297755-99297774 None:intergenic 45.0%
ATTGTGGACAGAAGCTGGTT+TGG + Chr3:99297549-99297568 None:intergenic 45.0%
CACGCATTGCATAGTGTCTT+TGG + Chr3:99299750-99299769 None:intergenic 45.0%
CATAGTGTCTTTGGGCCTAA+TGG + Chr3:99299741-99299760 None:intergenic 45.0%
CCGTGTAGGTGTGTATCATA+AGG + Chr3:99299181-99299200 None:intergenic 45.0%
CTACATGAGGTGCGTGAAAT+CGG + Chr3:99300006-99300025 None:intergenic 45.0%
GAGGAGATTCTTCGAAAGTG+GGG + Chr3:99297675-99297694 None:intergenic 45.0%
GGAGGAGATTCTTCGAAAGT+GGG + Chr3:99297676-99297695 None:intergenic 45.0%
GTGGAATTGTTGTCGGATTG+TGG + Chr3:99297565-99297584 None:intergenic 45.0%
TACATGAGGTGCGTGAAATC+GGG + Chr3:99300005-99300024 None:intergenic 45.0%
TATAATGGCACGTACCGGAA+CGG + Chr3:99297809-99297828 None:intergenic 45.0%
TGGATTCTTAACAAGTGCCC+CGG - Chr3:99298346-99298365 MsG0380017665.01.T01:intron 45.0%
TGGTTGGAGAGAGAACTAGA+AGG + Chr3:99299572-99299591 None:intergenic 45.0%
TGTGGAGTCAGATACAAGTC+AGG - Chr3:99299768-99299787 MsG0380017665.01.T01:CDS 45.0%
TTCGAAAGTGGGGTCTTCAA+TGG + Chr3:99297665-99297684 None:intergenic 45.0%
TTGCACCTTTCGATGTGAGT+TGG + Chr3:99299853-99299872 None:intergenic 45.0%
! GACACTTGAGGGTGTATTGT+TGG + Chr3:99299489-99299508 None:intergenic 45.0%
! GAGGTCTCTTTTTCTTGGAG+AGG + Chr3:99299649-99299668 None:intergenic 45.0%
! GTGGGATTGATTTCAAGAGG+AGG + Chr3:99297718-99297737 None:intergenic 45.0%
! TCACCGAGGTCTCTTTTTCT+TGG + Chr3:99299654-99299673 None:intergenic 45.0%
!! AATAATTACTATATATATAA+TGG + Chr3:99297824-99297843 None:intergenic 5.0%
!! TATAAATATATGATAAAAAA+AGG + Chr3:99298444-99298463 None:intergenic 5.0%
!! TATAGTTAAAAAAAAATATA+GGG + Chr3:99298779-99298798 None:intergenic 5.0%
!!! ATAAATTTTAATATATTTGA+TGG + Chr3:99298950-99298969 None:intergenic 5.0%
!!! TAAAATGAATATTATTTTTA+AGG - Chr3:99298195-99298214 MsG0380017665.01.T01:intron 5.0%
ACGCCAGAAGGAGATGATGA+GGG - Chr3:99299881-99299900 MsG0380017665.01.T01:CDS 50.0%
AGAGTGAGAAGATGTGGTGG+TGG + Chr3:99299601-99299620 None:intergenic 50.0%
ATTCTTAACAAGTGCCCCGG+AGG - Chr3:99298349-99298368 MsG0380017665.01.T01:intron 50.0%
CACACGTGACCGTTTACTAC+GGG + Chr3:99299526-99299545 None:intergenic 50.0%
CCACTGATAAGACTCCACAG+TGG - Chr3:99299706-99299725 MsG0380017665.01.T01:intron 50.0%
CGGCAAAAGCCCGTAGTAAA+CGG - Chr3:99299514-99299533 MsG0380017665.01.T01:intron 50.0%
GCACACGTGACCGTTTACTA+CGG + Chr3:99299527-99299546 None:intergenic 50.0%
GCACTCCAACTCACATCGAA+AGG - Chr3:99299845-99299864 MsG0380017665.01.T01:CDS 50.0%
GGTGTCAGAGTGAGAAGATG+TGG + Chr3:99299607-99299626 None:intergenic 50.0%
GTCAGAGTGAGAAGATGTGG+TGG + Chr3:99299604-99299623 None:intergenic 50.0%
TAGCTGCTTAACCAATGCCC+CGG + Chr3:99298239-99298258 None:intergenic 50.0%
TCATCATCTCCTTCTGGCGT+CGG + Chr3:99299881-99299900 None:intergenic 50.0%
TCTTGTTAACCAGTGCCTCC+GGG + Chr3:99298367-99298386 None:intergenic 50.0%
! AAAAGAGACCTCGGTGATGG+AGG - Chr3:99299657-99299676 MsG0380017665.01.T01:intron 50.0%
! CCACTGTGGAGTCTTATCAG+TGG + Chr3:99299709-99299728 None:intergenic 50.0%
! CGTTTACTACGGGCTTTTGC+CGG + Chr3:99299516-99299535 None:intergenic 50.0%
! GTCTTGTTAACCAGTGCCTC+CGG + Chr3:99298368-99298387 None:intergenic 50.0%
! GTTTACTACGGGCTTTTGCC+GGG + Chr3:99299515-99299534 None:intergenic 50.0%
!! ACAAATGTTGGGCTTGCTGC+AGG + Chr3:99299816-99299835 None:intergenic 50.0%
!! GTCGACTCGTACCTGAGTAT+AGG - Chr3:99299790-99299809 MsG0380017665.01.T01:CDS 50.0%
!!! CTTGGAGAGGGCTTTTTTGG+TGG + Chr3:99299636-99299655 None:intergenic 50.0%
ACACCCTCAAGTGTCTGTCC+CGG - Chr3:99299494-99299513 MsG0380017665.01.T01:intron 55.0%
AGAATGTTAACCGGTGCCCC+GGG - Chr3:99298218-99298237 MsG0380017665.01.T01:intron 55.0%
AGCTGCTTAACCAATGCCCC+GGG + Chr3:99298238-99298257 None:intergenic 55.0%
CTTGCTGCAGGCCTATACTC+AGG + Chr3:99299804-99299823 None:intergenic 55.0%
CTTGTTAACCAGTGCCTCCG+GGG + Chr3:99298366-99298385 None:intergenic 55.0%
GACGCCAGAAGGAGATGATG+AGG - Chr3:99299880-99299899 MsG0380017665.01.T01:CDS 55.0%
GAGAATGTTAACCGGTGCCC+CGG - Chr3:99298217-99298236 MsG0380017665.01.T01:intron 55.0%
GTCGGATTGTGGACAGAAGC+TGG + Chr3:99297554-99297573 None:intergenic 55.0%
TCGTGCCAGAATTCTGCCGA+CGG - Chr3:99297763-99297782 MsG0380017665.01.T01:CDS 55.0%
TGTCTTTGGGCCTAATGGCC+CGG + Chr3:99299736-99299755 None:intergenic 55.0%
TTGCCGGGACAGACACTTGA+GGG + Chr3:99299500-99299519 None:intergenic 55.0%
TTTGCCGGGACAGACACTTG+AGG + Chr3:99299501-99299520 None:intergenic 55.0%
!! GTGAGAAGATGTGGTGGTGG+TGG + Chr3:99299598-99299617 None:intergenic 55.0%
!!! GGGCTTTTTTGGTGGAGCCA+TGG + Chr3:99299628-99299647 None:intergenic 55.0%
AAGACTCCACAGTGGCGCAC+CGG - Chr3:99299714-99299733 MsG0380017665.01.T01:intron 60.0%
AAGGGCCGTCGGCAGAATTC+TGG + Chr3:99297771-99297790 None:intergenic 60.0%
ACGGAGAGTTCGCCGGAGAA+AGG + Chr3:99297790-99297809 None:intergenic 60.0%
AGGCGCGAAGTCCAGTTGCA+TGG + Chr3:99299552-99299571 None:intergenic 60.0%
CACGTGTGCCTCCATGCAAC+TGG - Chr3:99299538-99299557 MsG0380017665.01.T01:intron 60.0%
CGCGAAGTCCAGTTGCATGG+AGG + Chr3:99299549-99299568 None:intergenic 60.0%
CGGAGAGTTCGCCGGAGAAA+GGG + Chr3:99297789-99297808 None:intergenic 60.0%
GAATGTTAACCGGTGCCCCG+GGG - Chr3:99298219-99298238 MsG0380017665.01.T01:intron 60.0%
GCTGCTTAACCAATGCCCCG+GGG + Chr3:99298237-99298256 None:intergenic 60.0%
GGGCCCTCATCATCTCCTTC+TGG + Chr3:99299887-99299906 None:intergenic 60.0%
TACCGGAACGGAGAGTTCGC+CGG + Chr3:99297797-99297816 None:intergenic 60.0%
!! AGACCTCGGTGATGGAGGAG+AGG - Chr3:99299662-99299681 MsG0380017665.01.T01:intron 60.0%
!! AGATGTGGTGGTGGTGGTCG+TGG + Chr3:99299592-99299611 None:intergenic 60.0%
!! GACCTCGGTGATGGAGGAGA+GGG - Chr3:99299663-99299682 MsG0380017665.01.T01:intron 60.0%
AGACTCCACAGTGGCGCACC+GGG - Chr3:99299715-99299734 MsG0380017665.01.T01:intron 65.0%
CTCCGGCGAACTCTCCGTTC+CGG - Chr3:99297792-99297811 MsG0380017665.01.T01:CDS 65.0%
GACCCTCTCCTCCATCACCG+AGG + Chr3:99299668-99299687 None:intergenic 65.0%
GCAAGAGCTCCGACGCCAGA+AGG - Chr3:99299869-99299888 MsG0380017665.01.T01:CDS 65.0%
TAACCAATGCCCCGGGGCAC+CGG + Chr3:99298231-99298250 None:intergenic 65.0%
TCTGCCGACGGCCCTTTCTC+CGG - Chr3:99297775-99297794 MsG0380017665.01.T01:CDS 65.0%
TTCGCCGGAGAAAGGGCCGT+CGG + Chr3:99297782-99297801 None:intergenic 65.0%
! AACAAGTGCCCCGGAGGCAC+TGG - Chr3:99298355-99298374 MsG0380017665.01.T01:intron 65.0%
!! GTGGTGGTGGTGGTCGTGGT+TGG + Chr3:99299588-99299607 None:intergenic 65.0%
AATGGCCCGGTGCGCCACTG+TGG + Chr3:99299723-99299742 None:intergenic 70.0%
CAGTGGCGCACCGGGCCATT+AGG - Chr3:99299723-99299742 MsG0380017665.01.T01:intron 70.0%
TAACCGGTGCCCCGGGGCAT+TGG - Chr3:99298225-99298244 MsG0380017665.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 99297526 99300025 99297526 ID=MsG0380017665.01;Name=MsG0380017665.01
Chr3 mRNA 99297526 99300025 99297526 ID=MsG0380017665.01.T01;Parent=MsG0380017665.01;Name=MsG0380017665.01.T01;_AED=0.33;_eAED=0.36;_QI=0|0|0|1|1|1|3|0|339
Chr3 exon 99299738 99300025 99299738 ID=MsG0380017665.01.T01:exon:35672;Parent=MsG0380017665.01.T01
Chr3 exon 99299287 99299334 99299287 ID=MsG0380017665.01.T01:exon:35671;Parent=MsG0380017665.01.T01
Chr3 exon 99297526 99298209 99297526 ID=MsG0380017665.01.T01:exon:35670;Parent=MsG0380017665.01.T01
Chr3 CDS 99299738 99300025 99299738 ID=MsG0380017665.01.T01:cds;Parent=MsG0380017665.01.T01
Chr3 CDS 99299287 99299334 99299287 ID=MsG0380017665.01.T01:cds;Parent=MsG0380017665.01.T01
Chr3 CDS 99297526 99298209 99297526 ID=MsG0380017665.01.T01:cds;Parent=MsG0380017665.01.T01
Gene Sequence

>MsG0380017665.01.T01

ATGGAAGCTCAAGAGTTTTTCCAAACCAGCTTCTGTCCACAATCCGACAACAATTCCACCACAAACAATGTAAACACTGCTGCTTCCGACCACTTCATCGTTGAAGATCTCTTTGATTTCTCTAATGAGGATGTTGCCATTGAAGACCCCACTTTCGAAGAATCTCCTCCTACCAACTCTAATGATTCTCCTCCTCTTGAAATCAATCCCACTTCCAATTTTTTCACCGACGTCAATTCGTGCCAGAATTCTGCCGACGGCCCTTTCTCCGGCGAACTCTCCGTTCCGGAGAATGTTAACCGGTGCCCCGGGGCATTGGTTAAGCAGCTAAAAGAGCAATATGATGATCTTGCGCAGCTAGAATGGATGTCCAAATTTGCTGAGGAATCATTTTCAAGTGAGGACCTTCACAAGCTACAGTTGATATCTGGATTAAAGGCACCAAATAACGTTGAATCAAAAACTCATGAAGAACGCAACCCAACAATACACCCTCAAGTGTCTGTCCCGGCAAAAGCCCGTAGTAAACGGTCACGTGTGCCTCCATGCAACTGGACTTCGCGCCTTCTAGTTCTCTCTCCAACCACGACCACCACCACCACATCTTCTCACTCTGACACCATGGCTCCACCAAAAAAGCCCTCTCCAAGAAAAAGAGACCTCGGTGATGGAGGAGAGGGTCGCAAGTGTCTTCATTGCGCCACTGATAAGACTCCACAGTGGCGCACCGGGCCATTAGGCCCAAAGACACTATGCAATGCGTGTGGAGTCAGATACAAGTCAGGTCGACTCGTACCTGAGTATAGGCCTGCAGCAAGCCCAACATTTGTGTTGACTAAGCACTCCAACTCACATCGAAAGGTGCAAGAGCTCCGACGCCAGAAGGAGATGATGAGGGCCCAACAACACCAATTGTTGCAACTACAACATCATCACAGCATTATGTTTGAAGGACCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGACCCGATTTCACGCACCTCATGTAG
Protein sequence

>MsG0380017665.01.T01

MEAQEFFQTSFCPQSDNNSTTNNVNTAASDHFIVEDLFDFSNEDVAIEDPTFEESPPTNSNDSPPLEINPTSNFFTDVNSCQNSADGPFSGELSVPENVNRCPGALVKQLKEQYDDLAQLEWMSKFAEESFSSEDLHKLQLISGLKAPNNVESKTHEERNPTIHPQVSVPAKARSKRSRVPPCNWTSRLLVLSPTTTTTTTSSHSDTMAPPKKPSPRKRDLGDGGEGRKCLHCATDKTPQWRTGPLGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVQELRRQKEMMRAQQHQLLQLQHHHSIMFEGPSNGDDYLIHQHVGPDFTHLM*