Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024597.01.T01 | XP_003611408.1 | 97.606 | 543 | 13 | 0 | 1 | 543 | 1 | 543 | 0 | 1119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024597.01.T01 | O23553 | 68.051 | 554 | 160 | 8 | 1 | 543 | 1 | 548 | 0 | 784 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024597.01.T01 | G7JYN2 | 97.606 | 543 | 13 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1119 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048253.01 | MsG0580024597.01 | -0.802004 | 6.890568e-49 | 3.338189e-46 |
| MsG0080049027.01 | MsG0580024597.01 | -0.810259 | 1.259756e-50 | 7.558006e-48 |
| MsG0180000151.01 | MsG0580024597.01 | 0.838371 | 2.992926e-57 | 4.000412e-54 |
| MsG0180004025.01 | MsG0580024597.01 | 0.808863 | 2.512964e-50 | 1.452917e-47 |
| MsG0180005339.01 | MsG0580024597.01 | 0.813594 | 2.365125e-51 | 1.551119e-48 |
| MsG0280011073.01 | MsG0580024597.01 | 0.835277 | 1.842944e-56 | 2.242988e-53 |
| MsG0280011287.01 | MsG0580024597.01 | 0.831181 | 1.930983e-55 | 2.079386e-52 |
| MsG0380012184.01 | MsG0580024597.01 | 0.804488 | 2.109019e-49 | 1.088782e-46 |
| MsG0380013471.01 | MsG0580024597.01 | 0.815956 | 7.087887e-52 | 4.956489e-49 |
| MsG0380014179.01 | MsG0580024597.01 | 0.855219 | 7.304625e-62 | 1.674016e-58 |
| MsG0380014750.01 | MsG0580024597.01 | 0.837565 | 4.822384e-57 | 6.288800e-54 |
| MsG0480021024.01 | MsG0580024597.01 | 0.850769 | 1.370552e-60 | 2.713948e-57 |
| MsG0480022155.01 | MsG0580024597.01 | 0.856785 | 2.543857e-62 | 6.140406e-59 |
| MsG0480022239.01 | MsG0580024597.01 | 0.850728 | 1.407715e-60 | 2.783589e-57 |
| MsG0480022240.01 | MsG0580024597.01 | 0.872010 | 4.416336e-67 | 1.818337e-63 |
| MsG0480022243.01 | MsG0580024597.01 | 0.899308 | 2.253543e-77 | 2.770782e-73 |
| MsG0480022245.01 | MsG0580024597.01 | 0.902343 | 1.068521e-78 | 1.506231e-74 |
| MsG0480022246.01 | MsG0580024597.01 | 0.817559 | 3.096626e-52 | 2.262621e-49 |
| MsG0480022248.01 | MsG0580024597.01 | 0.813761 | 2.173245e-51 | 1.431677e-48 |
| MsG0480022535.01 | MsG0580024597.01 | 0.817541 | 3.126717e-52 | 2.283488e-49 |
| MsG0480023001.01 | MsG0580024597.01 | -0.823714 | 1.193407e-53 | 1.035789e-50 |
| MsG0480023641.01 | MsG0580024597.01 | 0.807001 | 6.255159e-50 | 3.444677e-47 |
| MsG0580024471.01 | MsG0580024597.01 | 0.833238 | 5.981102e-56 | 6.846872e-53 |
| MsG0580024491.01 | MsG0580024597.01 | -0.823688 | 1.210425e-53 | 1.049756e-50 |
| MsG0580024597.01 | MsG0580024598.01 | 0.950684 | 9.887800e-109 | 2.138721e-103 |
| MsG0580024597.01 | MsG0580024600.01 | 0.811943 | 5.437160e-51 | 3.410922e-48 |
| MsG0580024597.01 | MsG0580024601.01 | 0.952408 | 2.581949e-110 | 6.295838e-105 |
| MsG0580024597.01 | MsG0580024872.01 | 0.810265 | 1.255812e-50 | 7.535489e-48 |
| MsG0580024597.01 | MsG0580025280.01 | 0.803202 | 3.900888e-49 | 1.948424e-46 |
| MsG0580024597.01 | MsG0580029914.01 | 0.829949 | 3.865712e-55 | 4.015673e-52 |
| MsG0580024597.01 | MsG0680032516.01 | 0.862085 | 6.506611e-64 | 1.881870e-60 |
| MsG0580024597.01 | MsG0680035588.01 | 0.814269 | 1.679232e-51 | 1.121614e-48 |
| MsG0580024597.01 | MsG0680035618.01 | 0.859806 | 3.206160e-63 | 8.575606e-60 |
| MsG0580024597.01 | MsG0780037052.01 | -0.804373 | 2.228398e-49 | 1.147070e-46 |
| MsG0580024597.01 | MsG0780037105.01 | 0.800155 | 1.645326e-48 | 7.606039e-46 |
| MsG0580024597.01 | MsG0780040794.01 | 0.850249 | 1.918862e-60 | 3.735615e-57 |
| MsG0580024597.01 | MsG0880042035.01 | 0.827701 | 1.352662e-54 | 1.315843e-51 |
| MsG0580024597.01 | MsG0880042794.01 | 0.863218 | 2.911653e-64 | 8.760714e-61 |
| MsG0580024597.01 | MsG0880042948.01 | 0.807525 | 4.843771e-50 | 2.704067e-47 |
| MsG0580024597.01 | MsG0880043829.01 | 0.859465 | 4.059375e-63 | 1.073114e-59 |
| MsG0580024597.01 | MsG0880045190.01 | 0.843250 | 1.572550e-58 | 2.445746e-55 |
| MsG0580024597.01 | MsG0880046124.01 | 0.802205 | 6.265580e-49 | 3.050911e-46 |
| MsG0580024597.01 | MsG0880046880.01 | 0.810589 | 1.069382e-50 | 6.472044e-48 |
| MsG0580024597.01 | MsG0880047275.01 | 0.800767 | 1.235022e-48 | 5.798602e-46 |
| MsG0380015382.01 | MsG0580024597.01 | 0.825304 | 5.041595e-54 | 4.577962e-51 |
| MsG0380016182.01 | MsG0580024597.01 | 0.801986 | 6.950582e-49 | 3.365654e-46 |
| MsG0380016515.01 | MsG0580024597.01 | 0.818707 | 1.702887e-52 | 1.284134e-49 |
| MsG0380016516.01 | MsG0580024597.01 | 0.854089 | 1.552435e-61 | 3.428087e-58 |
| MsG0380017022.01 | MsG0580024597.01 | 0.837965 | 3.806841e-57 | 5.026220e-54 |
| MsG0380017023.01 | MsG0580024597.01 | 0.821485 | 3.938834e-53 | 3.208615e-50 |
| MsG0380017037.01 | MsG0580024597.01 | 0.801147 | 1.032916e-48 | 4.896829e-46 |
| MsG0380017665.01 | MsG0580024597.01 | -0.813714 | 2.225346e-51 | 1.464234e-48 |
| MsG0380017791.01 | MsG0580024597.01 | 0.847971 | 8.250916e-60 | 1.491531e-56 |
| MsG0380018077.01 | MsG0580024597.01 | -0.818128 | 2.304185e-52 | 1.710064e-49 |
| MsG0480018345.01 | MsG0580024597.01 | 0.851202 | 1.034481e-60 | 2.077947e-57 |
| MsG0280006669.01 | MsG0580024597.01 | 0.804131 | 2.503092e-49 | 1.280447e-46 |
| MsG0280007429.01 | MsG0580024597.01 | 0.894220 | 3.026389e-75 | 2.981469e-71 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024597.01.T01 | MTR_5g013620 | 97.606 | 543 | 13 | 0 | 1 | 543 | 1 | 543 | 0.0 | 1119 |
| MsG0580024597.01.T01 | MTR_5g013640 | 91.376 | 545 | 43 | 2 | 1 | 543 | 1 | 543 | 0.0 | 1040 |
| MsG0580024597.01.T01 | MTR_4g099110 | 73.616 | 542 | 125 | 5 | 1 | 535 | 1 | 531 | 0.0 | 832 |
| MsG0580024597.01.T01 | MTR_6g477780 | 62.865 | 342 | 115 | 2 | 181 | 510 | 10 | 351 | 3.55e-165 | 474 |
| MsG0580024597.01.T01 | MTR_4g045667 | 49.655 | 435 | 202 | 4 | 87 | 507 | 11 | 442 | 1.06e-155 | 454 |
| MsG0580024597.01.T01 | MTR_2g089030 | 49.771 | 436 | 202 | 4 | 86 | 507 | 83 | 515 | 6.41e-149 | 440 |
| MsG0580024597.01.T01 | MTR_8g099775 | 46.039 | 467 | 231 | 7 | 90 | 543 | 80 | 538 | 6.02e-140 | 416 |
| MsG0580024597.01.T01 | MTR_7g077410 | 46.275 | 443 | 221 | 6 | 86 | 515 | 262 | 700 | 5.04e-123 | 377 |
| MsG0580024597.01.T01 | MTR_2g020240 | 38.137 | 451 | 269 | 4 | 63 | 508 | 57 | 502 | 7.98e-105 | 325 |
| MsG0580024597.01.T01 | MTR_5g026210 | 37.797 | 463 | 270 | 8 | 59 | 510 | 189 | 644 | 4.21e-103 | 324 |
| MsG0580024597.01.T01 | MTR_2g020240 | 38.587 | 368 | 217 | 3 | 144 | 507 | 4 | 366 | 8.23e-89 | 279 |
| MsG0580024597.01.T01 | MTR_5g026210 | 40.432 | 324 | 185 | 6 | 59 | 381 | 189 | 505 | 1.59e-79 | 258 |
| MsG0580024597.01.T01 | MTR_5g026210 | 41.091 | 275 | 158 | 4 | 59 | 332 | 189 | 460 | 1.33e-67 | 226 |
| MsG0580024597.01.T01 | MTR_6g477770 | 66.667 | 93 | 31 | 0 | 89 | 181 | 106 | 198 | 9.07e-40 | 143 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580024597.01.T01 | AT4G17090 | 68.051 | 554 | 160 | 8 | 1 | 543 | 1 | 548 | 0.0 | 784 |
| MsG0580024597.01.T01 | AT3G23920 | 65.138 | 436 | 138 | 2 | 89 | 510 | 106 | 541 | 0.0 | 613 |
| MsG0580024597.01.T01 | AT4G15210 | 48.394 | 436 | 207 | 5 | 87 | 507 | 12 | 444 | 6.89e-149 | 437 |
| MsG0580024597.01.T01 | AT4G15210 | 51.795 | 390 | 183 | 4 | 87 | 474 | 12 | 398 | 1.49e-146 | 428 |
| MsG0580024597.01.T01 | AT2G32290 | 44.979 | 478 | 245 | 6 | 43 | 507 | 34 | 506 | 5.99e-141 | 419 |
| MsG0580024597.01.T01 | AT4G00490 | 48.843 | 432 | 204 | 6 | 89 | 507 | 95 | 522 | 1.09e-138 | 412 |
| MsG0580024597.01.T01 | AT4G15210 | 47.608 | 418 | 195 | 5 | 128 | 531 | 1 | 408 | 1.22e-138 | 409 |
| MsG0580024597.01.T01 | AT4G15210 | 47.608 | 418 | 195 | 5 | 128 | 531 | 1 | 408 | 1.22e-138 | 409 |
| MsG0580024597.01.T01 | AT5G55700 | 43.964 | 439 | 227 | 5 | 88 | 508 | 91 | 528 | 2.29e-130 | 390 |
| MsG0580024597.01.T01 | AT2G45880 | 46.387 | 429 | 213 | 6 | 89 | 504 | 248 | 672 | 5.02e-122 | 374 |
| MsG0580024597.01.T01 | AT5G45300 | 39.726 | 438 | 246 | 8 | 85 | 510 | 251 | 682 | 6.17e-99 | 314 |
| MsG0580024597.01.T01 | AT5G45300 | 39.726 | 438 | 246 | 8 | 85 | 510 | 265 | 696 | 6.41e-99 | 315 |
| MsG0580024597.01.T01 | AT5G45300 | 39.726 | 438 | 246 | 8 | 85 | 510 | 249 | 680 | 7.20e-99 | 314 |
| MsG0580024597.01.T01 | AT5G55700 | 44.954 | 327 | 167 | 3 | 195 | 508 | 39 | 365 | 4.93e-98 | 302 |
| MsG0580024597.01.T01 | AT5G18670 | 37.705 | 427 | 248 | 4 | 89 | 508 | 87 | 502 | 6.36e-89 | 284 |
Find 138 sgRNAs with CRISPR-Local
Find 184 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATAGATTTACAGATTATT+TGG | 0.109679 | 5:-6733933 | MsG0580024597.01.T01:CDS |
| CCAATGAATTCCAGCTATTT+TGG | 0.174268 | 5:+6732581 | None:intergenic |
| TTCCAAGTTCCATCAGTTTC+AGG | 0.191128 | 5:+6733427 | None:intergenic |
| TAAAAGCATGTTGAATTATT+AGG | 0.193317 | 5:-6732021 | MsG0580024597.01.T01:three_prime_UTR |
| ATGGTCCTATGAATTATAAT+TGG | 0.239981 | 5:-6734389 | MsG0580024597.01.T01:CDS |
| ACTTGTTTGGAATATGCTTT+TGG | 0.267147 | 5:+6732620 | None:intergenic |
| TTGGTTTACACAGACAAATT+AGG | 0.267790 | 5:-6734058 | MsG0580024597.01.T01:CDS |
| ACTTGGAAGTTTCCCGGAAT+TGG | 0.285074 | 5:-6733412 | MsG0580024597.01.T01:CDS |
| GGTTGATGCTTGGTGGGGTT+TGG | 0.299766 | 5:-6734421 | MsG0580024597.01.T01:CDS |
| TATATTGAATTTCACATGTA+TGG | 0.303816 | 5:-6732451 | MsG0580024597.01.T01:CDS |
| GGTTGCTTGAGGGTGATAAT+TGG | 0.305293 | 5:-6732230 | MsG0580024597.01.T01:CDS |
| GGTTCGGTACGTAGATAATT+TGG | 0.306701 | 5:-6731940 | MsG0580024597.01.T01:three_prime_UTR |
| GCATTGGAATTCTCCAATTC+CGG | 0.309760 | 5:+6733399 | None:intergenic |
| GGAACATGGAACACAGAATA+TGG | 0.310195 | 5:-6732708 | MsG0580024597.01.T01:CDS |
| AATCAATTTCCTGAGGATAC+TGG | 0.317015 | 5:-6732747 | MsG0580024597.01.T01:CDS |
| TTATGTTGGACACATAATTA+AGG | 0.321924 | 5:-6732124 | MsG0580024597.01.T01:CDS |
| ATAGTTTCACTCCACTTGTT+TGG | 0.337144 | 5:+6732607 | None:intergenic |
| GAAGCATCAGCAGGGGCAAT+TGG | 0.347112 | 5:-6732816 | MsG0580024597.01.T01:CDS |
| ATGGAGATTTCTTCCTTGAT+TGG | 0.348721 | 5:-6732689 | MsG0580024597.01.T01:CDS |
| CTGTAAAGAAAGACAAGAAA+TGG | 0.352936 | 5:-6734617 | MsG0580024597.01.T01:CDS |
| TGGTTTACACAGACAAATTA+GGG | 0.354994 | 5:-6734057 | MsG0580024597.01.T01:CDS |
| GAAATGTTGGTGACTCTTGC+AGG | 0.358515 | 5:-6734284 | MsG0580024597.01.T01:intron |
| TTTGCTAGCATTTGTGCTAT+TGG | 0.360035 | 5:+6732483 | None:intergenic |
| ACAAGTGGACCTCATGATTC+TGG | 0.369913 | 5:-6732777 | MsG0580024597.01.T01:CDS |
| CTTATTTAAGAATAAATAAG+AGG | 0.373002 | 5:-6732251 | MsG0580024597.01.T01:CDS |
| GATAGATTTACAGATTATTT+GGG | 0.377086 | 5:-6733932 | MsG0580024597.01.T01:CDS |
| GATGGAACTTGGAAGTTTCC+CGG | 0.379733 | 5:-6733418 | MsG0580024597.01.T01:CDS |
| CCCATTGTTACCGTGTCTAA+TGG | 0.379739 | 5:+6734519 | None:intergenic |
| CATCCCAGTGAGATATATTC+AGG | 0.390835 | 5:+6734025 | None:intergenic |
| AGATATGATTCAAGTGCTTA+TGG | 0.392336 | 5:-6732309 | MsG0580024597.01.T01:CDS |
| CCAAAATAGCTGGAATTCAT+TGG | 0.410744 | 5:-6732581 | MsG0580024597.01.T01:CDS |
| CTTGCTGAAGCTGATTCATA+TGG | 0.414041 | 5:-6732156 | MsG0580024597.01.T01:CDS |
| AAGTGGGACTAGGTCCTTGT+GGG | 0.419249 | 5:-6733471 | MsG0580024597.01.T01:CDS |
| GCTTCCCAATTATAATTCAT+AGG | 0.422256 | 5:+6734384 | None:intergenic |
| CTGATTTCTTCCATCACCCA+TGG | 0.422552 | 5:+6734094 | None:intergenic |
| CAGGAAGTTCAAGTGGGACT+AGG | 0.426275 | 5:-6733481 | MsG0580024597.01.T01:CDS |
| AGCAGGAAGAACTCCACTTC+AGG | 0.426300 | 5:-6733984 | MsG0580024597.01.T01:CDS |
| GGAGAATGATGTTATAATAG+AGG | 0.433712 | 5:-6732103 | MsG0580024597.01.T01:CDS |
| AGCAATGAATGCTAGTTTGA+TGG | 0.437255 | 5:-6734475 | MsG0580024597.01.T01:CDS |
| TGTTTCTTTCTGATTAATCA+AGG | 0.443999 | 5:+6734776 | None:intergenic |
| GGAGTTCTTCCTGCTAGAAC+AGG | 0.447514 | 5:+6733992 | None:intergenic |
| CATTGGAATTCTCCAATTCC+GGG | 0.450004 | 5:+6733400 | None:intergenic |
| TCCAAGTTCCATCAGTTTCA+GGG | 0.453104 | 5:+6733428 | None:intergenic |
| CATGGGTGATGGAAGAAATC+AGG | 0.453663 | 5:-6734093 | MsG0580024597.01.T01:CDS |
| AAACTATCTGCCAAAATAGC+TGG | 0.456022 | 5:-6732591 | MsG0580024597.01.T01:CDS |
| TATGGGACTGATCTTTATGT+TGG | 0.456464 | 5:-6732138 | MsG0580024597.01.T01:CDS |
| TCCTTCACGGCCAACACTGA+TGG | 0.459899 | 5:-6731962 | MsG0580024597.01.T01:three_prime_UTR |
| TTTCACATGTATGGAAATGA+AGG | 0.460068 | 5:-6732442 | MsG0580024597.01.T01:CDS |
| CCCATCAGTGTTGGCCGTGA+AGG | 0.461411 | 5:+6731961 | None:intergenic |
| AAGCATCAGCAGGGGCAATT+GGG | 0.462242 | 5:-6732815 | MsG0580024597.01.T01:CDS |
| ATAGCATTCCTCTACCTCCA+TGG | 0.463802 | 5:-6734111 | MsG0580024597.01.T01:intron |
| CCATCAGTTTCAGGGTAAGA+TGG | 0.465255 | 5:+6733436 | None:intergenic |
| TGATAATTGGAGGAAATTTG+TGG | 0.467073 | 5:-6732217 | MsG0580024597.01.T01:CDS |
| TTCAGTTTGTGACCAAAAGA+TGG | 0.467366 | 5:+6734693 | None:intergenic |
| TTTGTACCTTGTCATAGCAT+TGG | 0.470424 | 5:+6733383 | None:intergenic |
| TTGAAGAGTGCTGGAGTTGA+AGG | 0.475342 | 5:-6734450 | MsG0580024597.01.T01:CDS |
| GCGGAAGCTTCTCATGTAAT+CGG | 0.475464 | 5:+6733955 | None:intergenic |
| TTGTCTGTGTAAACCAACTC+AGG | 0.475976 | 5:+6734064 | None:intergenic |
| AGTAATGGTTGATGCTTGGT+GGG | 0.476693 | 5:-6734427 | MsG0580024597.01.T01:CDS |
| GAACACATATATCATGTTGA+TGG | 0.479468 | 5:-6732061 | MsG0580024597.01.T01:three_prime_UTR |
| TCATCCTTGGAAGCATCAGC+AGG | 0.479509 | 5:-6732825 | MsG0580024597.01.T01:CDS |
| ATGGCAGGTGGTGAACTTGC+TGG | 0.480529 | 5:-6732348 | MsG0580024597.01.T01:CDS |
| TGGTCCTATGAATTATAATT+GGG | 0.482229 | 5:-6734388 | MsG0580024597.01.T01:CDS |
| AAATCCTGAATATATCTCAC+TGG | 0.483131 | 5:-6734029 | MsG0580024597.01.T01:CDS |
| TCCATCACCCATGGAGGTAG+AGG | 0.485439 | 5:+6734103 | None:intergenic |
| ACAGTATATGAGATCATCCT+TGG | 0.486046 | 5:-6732838 | MsG0580024597.01.T01:intron |
| ACTTGATTAACCAATCCTTC+TGG | 0.487449 | 5:+6732387 | None:intergenic |
| TCCTCTACCTCCATGGGTGA+TGG | 0.488299 | 5:-6734104 | MsG0580024597.01.T01:CDS |
| ATTGGTTAATCAAGTGAGAA+TGG | 0.490106 | 5:-6732379 | MsG0580024597.01.T01:CDS |
| ACCCTGAAACTGATGGAACT+TGG | 0.491404 | 5:-6733429 | MsG0580024597.01.T01:CDS |
| TAATTGTTCACCAGAAGGAT+TGG | 0.500260 | 5:-6732397 | MsG0580024597.01.T01:CDS |
| TGCTTGAGGGTGATAATTGG+AGG | 0.503043 | 5:-6732227 | MsG0580024597.01.T01:CDS |
| TGCCCCTGCTGATGCTTCCA+AGG | 0.505543 | 5:+6732821 | None:intergenic |
| CCATTAGACACGGTAACAAT+GGG | 0.505572 | 5:-6734519 | MsG0580024597.01.T01:CDS |
| ATAAATAAGAGGTTGCTTGA+GGG | 0.505894 | 5:-6732240 | MsG0580024597.01.T01:CDS |
| GAGTAATGGTTGATGCTTGG+TGG | 0.507394 | 5:-6734428 | MsG0580024597.01.T01:CDS |
| TTGATGGCATTGAAGAGTGC+TGG | 0.508850 | 5:-6734459 | MsG0580024597.01.T01:CDS |
| ACGGCCAACACTGATGGGTT+CGG | 0.509170 | 5:-6731956 | MsG0580024597.01.T01:three_prime_UTR |
| TGTAAAGAAAGACAAGAAAT+GGG | 0.514719 | 5:-6734616 | MsG0580024597.01.T01:CDS |
| CATCAATGTGGTGGAAATGT+TGG | 0.516528 | 5:-6734297 | MsG0580024597.01.T01:CDS |
| AATAAATAAGAGGTTGCTTG+AGG | 0.517623 | 5:-6732241 | MsG0580024597.01.T01:CDS |
| TTATGCTGAGCTTGTTCAGA+TGG | 0.518500 | 5:-6734361 | MsG0580024597.01.T01:CDS |
| TTTGTTGTGAGTATGTCTGA+TGG | 0.525311 | 5:-6732192 | MsG0580024597.01.T01:CDS |
| GTAATGGTTGATGCTTGGTG+GGG | 0.525670 | 5:-6734426 | MsG0580024597.01.T01:CDS |
| GATTCAGTGCCTGTTCTAGC+AGG | 0.529878 | 5:-6734001 | MsG0580024597.01.T01:CDS |
| AGTGAGAATGGCAACAAAGA+TGG | 0.533714 | 5:-6732367 | MsG0580024597.01.T01:CDS |
| TAGCATTCCTCTACCTCCAT+GGG | 0.534553 | 5:-6734110 | MsG0580024597.01.T01:CDS |
| CCATCTTACCCTGAAACTGA+TGG | 0.538520 | 5:-6733436 | MsG0580024597.01.T01:CDS |
| GCCATTAGACACGGTAACAA+TGG | 0.539108 | 5:-6734520 | MsG0580024597.01.T01:CDS |
| CCTTCACGGCCAACACTGAT+GGG | 0.539557 | 5:-6731961 | MsG0580024597.01.T01:three_prime_UTR |
| TGTCTGATGGTGGTAAACTA+AGG | 0.542826 | 5:-6732179 | MsG0580024597.01.T01:CDS |
| TAATCGGAGTAGACCTGAAG+TGG | 0.543820 | 5:+6733971 | None:intergenic |
| TGCTGGAGTTGAAGGAGTAA+TGG | 0.546595 | 5:-6734442 | MsG0580024597.01.T01:CDS |
| AATCAGGAAGAACCCTGAGT+TGG | 0.548086 | 5:-6734077 | MsG0580024597.01.T01:CDS |
| GTTTGCTTGAGTACCAATCA+AGG | 0.552816 | 5:+6732676 | None:intergenic |
| GGGCAATTGGGAAGAAAGAG+TGG | 0.553037 | 5:-6732803 | MsG0580024597.01.T01:CDS |
| AAAAGCATATTCCAAACAAG+TGG | 0.558992 | 5:-6732618 | MsG0580024597.01.T01:CDS |
| TATAACACAAGGTTTCATGA+TGG | 0.559816 | 5:-6732513 | MsG0580024597.01.T01:CDS |
| AACACATATATCATGTTGAT+GGG | 0.560154 | 5:-6732060 | MsG0580024597.01.T01:three_prime_UTR |
| CTGCAGGTTACTATAACACA+AGG | 0.561651 | 5:-6732524 | MsG0580024597.01.T01:CDS |
| AAGGAGTAATGGTTGATGCT+TGG | 0.565190 | 5:-6734431 | MsG0580024597.01.T01:CDS |
| GATGCTAATTGTTCACCAGA+AGG | 0.566913 | 5:-6732402 | MsG0580024597.01.T01:CDS |
| GTTGTGAGTATGTCTGATGG+TGG | 0.571037 | 5:-6732189 | MsG0580024597.01.T01:CDS |
| TGGTGGTGTCTCGAATGTAT+TGG | 0.573266 | 5:-6731920 | MsG0580024597.01.T01:three_prime_UTR |
| TTGCTGAAGCTGATTCATAT+GGG | 0.575219 | 5:-6732155 | MsG0580024597.01.T01:CDS |
| AGAATGGCAACAAAGATGGC+AGG | 0.578781 | 5:-6732363 | MsG0580024597.01.T01:CDS |
| TAATTTGCAGGAAGTTCAAG+TGG | 0.580197 | 5:-6733488 | MsG0580024597.01.T01:intron |
| TCGGTACGTAGATAATTTGG+TGG | 0.585995 | 5:-6731937 | MsG0580024597.01.T01:three_prime_UTR |
| CATGCAACTGAATTAACTGC+AGG | 0.589620 | 5:-6732540 | MsG0580024597.01.T01:CDS |
| AAGAAAGAGTGGGGAACAAG+TGG | 0.590788 | 5:-6732792 | MsG0580024597.01.T01:CDS |
| AATCCTGAATATATCTCACT+GGG | 0.599678 | 5:-6734028 | MsG0580024597.01.T01:CDS |
| GGCAATTGGGAAGAAAGAGT+GGG | 0.609694 | 5:-6732802 | MsG0580024597.01.T01:CDS |
| CATCCTTGGAAGCATCAGCA+GGG | 0.618285 | 5:-6732824 | MsG0580024597.01.T01:CDS |
| TCAAGCAAACTTGTTGAACA+TGG | 0.618498 | 5:-6732663 | MsG0580024597.01.T01:CDS |
| TGTCTGTGTAAACCAACTCA+GGG | 0.620140 | 5:+6734065 | None:intergenic |
| CAAGTGGGACTAGGTCCTTG+TGG | 0.627114 | 5:-6733472 | MsG0580024597.01.T01:CDS |
| GGATATCTCAGCTCCCCACA+AGG | 0.629732 | 5:+6733457 | None:intergenic |
| AATAATCTGTAAATCTATCG+CGG | 0.635987 | 5:+6733936 | None:intergenic |
| TGGTGATTCGAATAGAGTAC+CGG | 0.636351 | 5:-6734556 | MsG0580024597.01.T01:CDS |
| AGTGGGACTAGGTCCTTGTG+GGG | 0.637417 | 5:-6733470 | MsG0580024597.01.T01:CDS |
| AATTTGCAGGAAGTTCAAGT+GGG | 0.647537 | 5:-6733487 | MsG0580024597.01.T01:intron |
| GGTGAACAATTAGCATCACA+AGG | 0.655544 | 5:+6732408 | None:intergenic |
| AATGGCAACATCACAAACAC+CGG | 0.660873 | 5:+6734537 | None:intergenic |
| ATCCTTGGAAGCATCAGCAG+GGG | 0.664828 | 5:-6732823 | MsG0580024597.01.T01:CDS |
| CGTACCGAACCCATCAGTGT+TGG | 0.667280 | 5:+6731952 | None:intergenic |
| TTAGACACGGTAACAATGGG+AGG | 0.667348 | 5:-6734516 | MsG0580024597.01.T01:CDS |
| GCACAAATGCTAGCAAAACA+CGG | 0.667922 | 5:-6732477 | MsG0580024597.01.T01:CDS |
| TTGTATTGACCAGAATCATG+AGG | 0.670196 | 5:+6732768 | None:intergenic |
| ATTTCTTCCATCACCCATGG+AGG | 0.672048 | 5:+6734097 | None:intergenic |
| ATGGCAACAAAGATGGCAGG+TGG | 0.674756 | 5:-6732360 | MsG0580024597.01.T01:CDS |
| TCAATACAATCAATTTCCTG+AGG | 0.689657 | 5:-6732754 | MsG0580024597.01.T01:CDS |
| AGAATTCCAATGCTATGACA+AGG | 0.689937 | 5:-6733389 | MsG0580024597.01.T01:intron |
| TTTACACAGACAAATTAGGG+AGG | 0.692025 | 5:-6734054 | MsG0580024597.01.T01:CDS |
| GCAAATAGAAATAACACACA+AGG | 0.695438 | 5:-6734860 | MsG0580024597.01.T01:five_prime_UTR |
| TGTGATGTTGCCATTAGACA+CGG | 0.702107 | 5:-6734529 | MsG0580024597.01.T01:CDS |
| CTCTATTCGAATCACCATCG+TGG | 0.716638 | 5:+6734562 | None:intergenic |
| GCAATTGGGAAGAAAGAGTG+GGG | 0.730495 | 5:-6732801 | MsG0580024597.01.T01:CDS |
| TCTGTCACTCATAACCACGA+TGG | 0.739469 | 5:-6734576 | MsG0580024597.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATTTCAAATATGATA+AGG | - | Chr5:6733743-6733762 | MsG0580024597.01.T01:intron | 10.0% |
| !! | AGATATTATTACACTAAAAA+TGG | - | Chr5:6731894-6731913 | MsG0580024597.01.T01:three_prime_UTR | 15.0% |
| !! | CTTATTTAAGAATAAATAAG+AGG | - | Chr5:6734466-6734485 | MsG0580024597.01.T01:CDS | 15.0% |
| !!! | ATAAAAATCTAAGACTAATT+TGG | - | Chr5:6732568-6732587 | MsG0580024597.01.T01:CDS | 15.0% |
| !!! | ATCTAACACTAATATTATTT+TGG | + | Chr5:6733384-6733403 | None:intergenic | 15.0% |
| !!! | TTAAGATATTTTGCAATTAA+AGG | + | Chr5:6733609-6733628 | None:intergenic | 15.0% |
| !! | ACATTTGTTCAAAACTTTAA+CGG | - | Chr5:6732910-6732929 | MsG0580024597.01.T01:intron | 20.0% |
| !! | GATAGATTTACAGATTATTT+GGG | - | Chr5:6732785-6732804 | MsG0580024597.01.T01:CDS | 20.0% |
| !! | TATATTGAATTTCACATGTA+TGG | - | Chr5:6734266-6734285 | MsG0580024597.01.T01:intron | 20.0% |
| !!! | AGATATATTTTGTTACAACT+GGG | - | Chr5:6733400-6733419 | MsG0580024597.01.T01:CDS | 20.0% |
| !!! | GAGTTCAAAGAATATTTTTT+TGG | - | Chr5:6733637-6733656 | MsG0580024597.01.T01:intron | 20.0% |
| !!! | TAAAAGCATGTTGAATTATT+AGG | - | Chr5:6734696-6734715 | MsG0580024597.01.T01:CDS | 20.0% |
| !!! | TAGATATATTTTGTTACAAC+TGG | - | Chr5:6733399-6733418 | MsG0580024597.01.T01:CDS | 20.0% |
| !!! | TAGTCTTAGATTTTTATGTT+TGG | + | Chr5:6732565-6732584 | None:intergenic | 20.0% |
| !!! | TTATTAAATTAACATCGACT+AGG | + | Chr5:6733004-6733023 | None:intergenic | 20.0% |
| ! | AACACATATATCATGTTGAT+GGG | - | Chr5:6734657-6734676 | MsG0580024597.01.T01:CDS | 25.0% |
| ! | AATAATCTGTAAATCTATCG+CGG | + | Chr5:6732784-6732803 | None:intergenic | 25.0% |
| ! | ACTAACTATCTTGCTTAATA+TGG | + | Chr5:6733075-6733094 | None:intergenic | 25.0% |
| ! | ATGGTCCTATGAATTATAAT+TGG | - | Chr5:6732328-6732347 | MsG0580024597.01.T01:CDS | 25.0% |
| ! | CATTTGTTCAAAACTTTAAC+GGG | - | Chr5:6732911-6732930 | MsG0580024597.01.T01:intron | 25.0% |
| ! | CGATAGATTTACAGATTATT+TGG | - | Chr5:6732784-6732803 | MsG0580024597.01.T01:CDS | 25.0% |
| ! | TAATATTCAACCACCAATTT+AGG | - | Chr5:6732483-6732502 | MsG0580024597.01.T01:CDS | 25.0% |
| ! | TGGTCCTATGAATTATAATT+GGG | - | Chr5:6732329-6732348 | MsG0580024597.01.T01:CDS | 25.0% |
| ! | TGTAAAGAAAGACAAGAAAT+GGG | - | Chr5:6732101-6732120 | MsG0580024597.01.T01:CDS | 25.0% |
| ! | TGTTTCTTTCTGATTAATCA+AGG | + | Chr5:6731944-6731963 | None:intergenic | 25.0% |
| ! | TTATGTTGGACACATAATTA+AGG | - | Chr5:6734593-6734612 | MsG0580024597.01.T01:CDS | 25.0% |
| !! | CCAAAAATTAAACCATCTTT+TGG | - | Chr5:6732012-6732031 | MsG0580024597.01.T01:three_prime_UTR | 25.0% |
| !! | GTTATAAGAGAAATACGTTT+TGG | - | Chr5:6733093-6733112 | MsG0580024597.01.T01:intron | 25.0% |
| !! | TAAGTACTTCATCAATTTTG+TGG | - | Chr5:6732822-6732841 | MsG0580024597.01.T01:CDS | 25.0% |
| !!! | CCAAAAGATGGTTTAATTTT+TGG | + | Chr5:6732015-6732034 | None:intergenic | 25.0% |
| !!! | TAAAGTTTTGAACAAATGTG+TGG | + | Chr5:6732909-6732928 | None:intergenic | 25.0% |
| !!! | TTATGACCAAATTAATTTGC+AGG | - | Chr5:6733217-6733236 | MsG0580024597.01.T01:intron | 25.0% |
| AAATCCTGAATATATCTCAC+TGG | - | Chr5:6732688-6732707 | MsG0580024597.01.T01:CDS | 30.0% | |
| AATAAATAAGAGGTTGCTTG+AGG | - | Chr5:6734476-6734495 | MsG0580024597.01.T01:CDS | 30.0% | |
| AATCCTGAATATATCTCACT+GGG | - | Chr5:6732689-6732708 | MsG0580024597.01.T01:CDS | 30.0% | |
| AGATATGATTCAAGTGCTTA+TGG | - | Chr5:6734408-6734427 | MsG0580024597.01.T01:CDS | 30.0% | |
| ATAAATAAGAGGTTGCTTGA+GGG | - | Chr5:6734477-6734496 | MsG0580024597.01.T01:CDS | 30.0% | |
| ATTGGTTAATCAAGTGAGAA+TGG | - | Chr5:6734338-6734357 | MsG0580024597.01.T01:CDS | 30.0% | |
| CTGTAAAGAAAGACAAGAAA+TGG | - | Chr5:6732100-6732119 | MsG0580024597.01.T01:CDS | 30.0% | |
| GAACACATATATCATGTTGA+TGG | - | Chr5:6734656-6734675 | MsG0580024597.01.T01:CDS | 30.0% | |
| GAACTTCCTGCAAATTAATT+TGG | + | Chr5:6733226-6733245 | None:intergenic | 30.0% | |
| GCAAATAGAAATAACACACA+AGG | - | Chr5:6731857-6731876 | MsG0580024597.01.T01:three_prime_UTR | 30.0% | |
| GCTTCCCAATTATAATTCAT+AGG | + | Chr5:6732336-6732355 | None:intergenic | 30.0% | |
| GGAGAATGATGTTATAATAG+AGG | - | Chr5:6734614-6734633 | MsG0580024597.01.T01:CDS | 30.0% | |
| TATAACACAAGGTTTCATGA+TGG | - | Chr5:6734204-6734223 | MsG0580024597.01.T01:intron | 30.0% | |
| TCAATACAATCAATTTCCTG+AGG | - | Chr5:6733963-6733982 | MsG0580024597.01.T01:CDS | 30.0% | |
| TCACATTTAAGAGCCTAAAT+TGG | + | Chr5:6732499-6732518 | None:intergenic | 30.0% | |
| TGATAATTGGAGGAAATTTG+TGG | - | Chr5:6734500-6734519 | MsG0580024597.01.T01:CDS | 30.0% | |
| TGGTTTACACAGACAAATTA+GGG | - | Chr5:6732660-6732679 | MsG0580024597.01.T01:CDS | 30.0% | |
| TTGGTTTACACAGACAAATT+AGG | - | Chr5:6732659-6732678 | MsG0580024597.01.T01:CDS | 30.0% | |
| TTTCACATGTATGGAAATGA+AGG | - | Chr5:6734275-6734294 | MsG0580024597.01.T01:intron | 30.0% | |
| ! | AAAAGCATATTCCAAACAAG+TGG | - | Chr5:6734099-6734118 | MsG0580024597.01.T01:CDS | 30.0% |
| ! | GTTATGTCTTTTCATCAATG+TGG | - | Chr5:6732408-6732427 | MsG0580024597.01.T01:CDS | 30.0% |
| ! | TTATCTAGGACATTACGTTA+AGG | + | Chr5:6732978-6732997 | None:intergenic | 30.0% |
| ! | TTTTCAAAAGAGAAGGAACA+TGG | - | Chr5:6733995-6734014 | MsG0580024597.01.T01:CDS | 30.0% |
| ! | TTTTGGACAAGAAACTTTGT+TGG | + | Chr5:6731998-6732017 | None:intergenic | 30.0% |
| !! | ACTGGATTTTTCAAAAGAGA+AGG | - | Chr5:6733988-6734007 | MsG0580024597.01.T01:CDS | 30.0% |
| !! | ACTTGTTTGGAATATGCTTT+TGG | + | Chr5:6734100-6734119 | None:intergenic | 30.0% |
| AAACTATCTGCCAAAATAGC+TGG | - | Chr5:6734126-6734145 | MsG0580024597.01.T01:intron | 35.0% | |
| AATCAATTTCCTGAGGATAC+TGG | - | Chr5:6733970-6733989 | MsG0580024597.01.T01:CDS | 35.0% | |
| AATTTGCAGGAAGTTCAAGT+GGG | - | Chr5:6733230-6733249 | MsG0580024597.01.T01:intron | 35.0% | |
| ACAGTATATGAGATCATCCT+TGG | - | Chr5:6733879-6733898 | MsG0580024597.01.T01:intron | 35.0% | |
| ACTTGATTAACCAATCCTTC+TGG | + | Chr5:6734333-6734352 | None:intergenic | 35.0% | |
| AGAATTCCAATGCTATGACA+AGG | - | Chr5:6733328-6733347 | MsG0580024597.01.T01:intron | 35.0% | |
| ATAGTTTCACTCCACTTGTT+TGG | + | Chr5:6734113-6734132 | None:intergenic | 35.0% | |
| ATGGAGATTTCTTCCTTGAT+TGG | - | Chr5:6734028-6734047 | MsG0580024597.01.T01:CDS | 35.0% | |
| CATTTAAGAGCCTAAATTGG+TGG | + | Chr5:6732496-6732515 | None:intergenic | 35.0% | |
| CCAAAATAGCTGGAATTCAT+TGG | - | Chr5:6734136-6734155 | MsG0580024597.01.T01:intron | 35.0% | |
| GCACACACAAAAAAGTTGAA+AGG | + | Chr5:6733537-6733556 | None:intergenic | 35.0% | |
| GGACATTACGTTAAGGAATA+AGG | + | Chr5:6732971-6732990 | None:intergenic | 35.0% | |
| GTTCAGATGGTACAAAAACA+TGG | - | Chr5:6732369-6732388 | MsG0580024597.01.T01:CDS | 35.0% | |
| TAATTGTTCACCAGAAGGAT+TGG | - | Chr5:6734320-6734339 | MsG0580024597.01.T01:CDS | 35.0% | |
| TACCGAGTAATTTCGATACT+TGG | - | Chr5:6732846-6732865 | MsG0580024597.01.T01:intron | 35.0% | |
| TATGGGACTGATCTTTATGT+TGG | - | Chr5:6734579-6734598 | MsG0580024597.01.T01:CDS | 35.0% | |
| TCCATTTGAGCACAACAATT+AGG | + | Chr5:6733559-6733578 | None:intergenic | 35.0% | |
| TTCAGTTTGTGACCAAAAGA+TGG | + | Chr5:6732027-6732046 | None:intergenic | 35.0% | |
| TTGAAAAATCCAGTATCCTC+AGG | + | Chr5:6733982-6734001 | None:intergenic | 35.0% | |
| TTTACACAGACAAATTAGGG+AGG | - | Chr5:6732663-6732682 | MsG0580024597.01.T01:CDS | 35.0% | |
| TTTGCTAGCATTTGTGCTAT+TGG | + | Chr5:6734237-6734256 | None:intergenic | 35.0% | |
| TTTGTACCTTGTCATAGCAT+TGG | + | Chr5:6733337-6733356 | None:intergenic | 35.0% | |
| ! | AGCAATGAATGCTAGTTTGA+TGG | - | Chr5:6732242-6732261 | MsG0580024597.01.T01:CDS | 35.0% |
| ! | ATGTCTTTTCATCAATGTGG+TGG | - | Chr5:6732411-6732430 | MsG0580024597.01.T01:CDS | 35.0% |
| ! | CCAATGAATTCCAGCTATTT+TGG | + | Chr5:6734139-6734158 | None:intergenic | 35.0% |
| ! | TAATTTGCAGGAAGTTCAAG+TGG | - | Chr5:6733229-6733248 | MsG0580024597.01.T01:intron | 35.0% |
| ! | TTGCTGAAGCTGATTCATAT+GGG | - | Chr5:6734562-6734581 | MsG0580024597.01.T01:CDS | 35.0% |
| ! | TTGTATTGACCAGAATCATG+AGG | + | Chr5:6733952-6733971 | None:intergenic | 35.0% |
| ! | TTTGTTGTGAGTATGTCTGA+TGG | - | Chr5:6734525-6734544 | MsG0580024597.01.T01:CDS | 35.0% |
| !! | AGCCAAGTATCGAAATTACT+CGG | + | Chr5:6732851-6732870 | None:intergenic | 35.0% |
| !! | ATATGCTTTTGGCTGATACA+AGG | + | Chr5:6734089-6734108 | None:intergenic | 35.0% |
| !! | TCAAGCAAACTTGTTGAACA+TGG | - | Chr5:6734054-6734073 | MsG0580024597.01.T01:CDS | 35.0% |
| !! | TTTTTCAATGCACTCCTTCA+CGG | - | Chr5:6734742-6734761 | MsG0580024597.01.T01:CDS | 35.0% |
| AATGGCAACATCACAAACAC+CGG | + | Chr5:6732183-6732202 | None:intergenic | 40.0% | |
| AGTGAGAATGGCAACAAAGA+TGG | - | Chr5:6734350-6734369 | MsG0580024597.01.T01:CDS | 40.0% | |
| CAAAACTTTAACGGGATCGT+CGG | - | Chr5:6732919-6732938 | MsG0580024597.01.T01:intron | 40.0% | |
| CATCCCAGTGAGATATATTC+AGG | + | Chr5:6732695-6732714 | None:intergenic | 40.0% | |
| CATGCAACTGAATTAACTGC+AGG | - | Chr5:6734177-6734196 | MsG0580024597.01.T01:intron | 40.0% | |
| CATTGGAATTCTCCAATTCC+GGG | + | Chr5:6733320-6733339 | None:intergenic | 40.0% | |
| CCATTAGACACGGTAACAAT+GGG | - | Chr5:6732198-6732217 | MsG0580024597.01.T01:CDS | 40.0% | |
| CTAAAAATGGCTCAAGCACT+TGG | - | Chr5:6731907-6731926 | MsG0580024597.01.T01:three_prime_UTR | 40.0% | |
| CTGCAGGTTACTATAACACA+AGG | - | Chr5:6734193-6734212 | MsG0580024597.01.T01:intron | 40.0% | |
| GATGCTAATTGTTCACCAGA+AGG | - | Chr5:6734315-6734334 | MsG0580024597.01.T01:CDS | 40.0% | |
| GCACAAATGCTAGCAAAACA+CGG | - | Chr5:6734240-6734259 | MsG0580024597.01.T01:intron | 40.0% | |
| GCATTGGAATTCTCCAATTC+CGG | + | Chr5:6733321-6733340 | None:intergenic | 40.0% | |
| GCCTAATTGTTGTGCTCAAA+TGG | - | Chr5:6733555-6733574 | MsG0580024597.01.T01:intron | 40.0% | |
| GGAACATGGAACACAGAATA+TGG | - | Chr5:6734009-6734028 | MsG0580024597.01.T01:CDS | 40.0% | |
| GGTGAACAATTAGCATCACA+AGG | + | Chr5:6734312-6734331 | None:intergenic | 40.0% | |
| GTTTGCTTGAGTACCAATCA+AGG | + | Chr5:6734044-6734063 | None:intergenic | 40.0% | |
| TCCAAGTTCCATCAGTTTCA+GGG | + | Chr5:6733292-6733311 | None:intergenic | 40.0% | |
| TCGGTACGTAGATAATTTGG+TGG | - | Chr5:6734780-6734799 | MsG0580024597.01.T01:CDS | 40.0% | |
| TGGTGATTCGAATAGAGTAC+CGG | - | Chr5:6732161-6732180 | MsG0580024597.01.T01:CDS | 40.0% | |
| TGTCTGTGTAAACCAACTCA+GGG | + | Chr5:6732655-6732674 | None:intergenic | 40.0% | |
| TGTGATGTTGCCATTAGACA+CGG | - | Chr5:6732188-6732207 | MsG0580024597.01.T01:CDS | 40.0% | |
| TTCCAAGTTCCATCAGTTTC+AGG | + | Chr5:6733293-6733312 | None:intergenic | 40.0% | |
| TTGTCTGTGTAAACCAACTC+AGG | + | Chr5:6732656-6732675 | None:intergenic | 40.0% | |
| ! | AAGGAGTAATGGTTGATGCT+TGG | - | Chr5:6732286-6732305 | MsG0580024597.01.T01:CDS | 40.0% |
| ! | AGTAATGGTTGATGCTTGGT+GGG | - | Chr5:6732290-6732309 | MsG0580024597.01.T01:CDS | 40.0% |
| ! | CATCAATGTGGTGGAAATGT+TGG | - | Chr5:6732420-6732439 | MsG0580024597.01.T01:CDS | 40.0% |
| ! | CTTGCTGAAGCTGATTCATA+TGG | - | Chr5:6734561-6734580 | MsG0580024597.01.T01:CDS | 40.0% |
| ! | GGTTCGGTACGTAGATAATT+TGG | - | Chr5:6734777-6734796 | MsG0580024597.01.T01:CDS | 40.0% |
| ! | TGGGGTTTGGTTGAAAAAGA+TGG | - | Chr5:6732309-6732328 | MsG0580024597.01.T01:CDS | 40.0% |
| ! | TTATGCTGAGCTTGTTCAGA+TGG | - | Chr5:6732356-6732375 | MsG0580024597.01.T01:CDS | 40.0% |
| !! | GGTCAAGTTTTGTCTACAAG+TGG | - | Chr5:6734429-6734448 | MsG0580024597.01.T01:CDS | 40.0% |
| !! | GTTTTGAACAAATGTGTGGC+TGG | + | Chr5:6732905-6732924 | None:intergenic | 40.0% |
| !! | TGTCTGATGGTGGTAAACTA+AGG | - | Chr5:6734538-6734557 | MsG0580024597.01.T01:CDS | 40.0% |
| AAGAAAGAGTGGGGAACAAG+TGG | - | Chr5:6733925-6733944 | MsG0580024597.01.T01:CDS | 45.0% | |
| AATCAGGAAGAACCCTGAGT+TGG | - | Chr5:6732640-6732659 | MsG0580024597.01.T01:CDS | 45.0% | |
| ACAAGTGGACCTCATGATTC+TGG | - | Chr5:6733940-6733959 | MsG0580024597.01.T01:CDS | 45.0% | |
| ACCCTGAAACTGATGGAACT+TGG | - | Chr5:6733288-6733307 | MsG0580024597.01.T01:intron | 45.0% | |
| ACTTGGAAGTTTCCCGGAAT+TGG | - | Chr5:6733305-6733324 | MsG0580024597.01.T01:intron | 45.0% | |
| AGAATGGCAACAAAGATGGC+AGG | - | Chr5:6734354-6734373 | MsG0580024597.01.T01:CDS | 45.0% | |
| ATAGCATTCCTCTACCTCCA+TGG | - | Chr5:6732606-6732625 | MsG0580024597.01.T01:CDS | 45.0% | |
| ATTTCTTCCATCACCCATGG+AGG | + | Chr5:6732623-6732642 | None:intergenic | 45.0% | |
| CCATCAGTTTCAGGGTAAGA+TGG | + | Chr5:6733284-6733303 | None:intergenic | 45.0% | |
| CCATCTTACCCTGAAACTGA+TGG | - | Chr5:6733281-6733300 | MsG0580024597.01.T01:intron | 45.0% | |
| CCCATTGTTACCGTGTCTAA+TGG | + | Chr5:6732201-6732220 | None:intergenic | 45.0% | |
| CTCTATTCGAATCACCATCG+TGG | + | Chr5:6732158-6732177 | None:intergenic | 45.0% | |
| CTGATTTCTTCCATCACCCA+TGG | + | Chr5:6732626-6732645 | None:intergenic | 45.0% | |
| GATGGAACTTGGAAGTTTCC+CGG | - | Chr5:6733299-6733318 | MsG0580024597.01.T01:intron | 45.0% | |
| GCAATTGGGAAGAAAGAGTG+GGG | - | Chr5:6733916-6733935 | MsG0580024597.01.T01:intron | 45.0% | |
| GCCATTAGACACGGTAACAA+TGG | - | Chr5:6732197-6732216 | MsG0580024597.01.T01:CDS | 45.0% | |
| GCGGAAGCTTCTCATGTAAT+CGG | + | Chr5:6732765-6732784 | None:intergenic | 45.0% | |
| GGCAATTGGGAAGAAAGAGT+GGG | - | Chr5:6733915-6733934 | MsG0580024597.01.T01:intron | 45.0% | |
| GGTTGCTTGAGGGTGATAAT+TGG | - | Chr5:6734487-6734506 | MsG0580024597.01.T01:CDS | 45.0% | |
| GTTGTGAGTATGTCTGATGG+TGG | - | Chr5:6734528-6734547 | MsG0580024597.01.T01:CDS | 45.0% | |
| TAATCGGAGTAGACCTGAAG+TGG | + | Chr5:6732749-6732768 | None:intergenic | 45.0% | |
| TAGCATTCCTCTACCTCCAT+GGG | - | Chr5:6732607-6732626 | MsG0580024597.01.T01:CDS | 45.0% | |
| TCTGTCACTCATAACCACGA+TGG | - | Chr5:6732141-6732160 | MsG0580024597.01.T01:CDS | 45.0% | |
| TGCTGGAGTTGAAGGAGTAA+TGG | - | Chr5:6732275-6732294 | MsG0580024597.01.T01:CDS | 45.0% | |
| TGCTTGAGGGTGATAATTGG+AGG | - | Chr5:6734490-6734509 | MsG0580024597.01.T01:CDS | 45.0% | |
| TTAGACACGGTAACAATGGG+AGG | - | Chr5:6732201-6732220 | MsG0580024597.01.T01:CDS | 45.0% | |
| ! | CATCGACTAGGTCGTTATCT+AGG | + | Chr5:6732992-6733011 | None:intergenic | 45.0% |
| ! | GAGTAATGGTTGATGCTTGG+TGG | - | Chr5:6732289-6732308 | MsG0580024597.01.T01:CDS | 45.0% |
| ! | GTAATGGTTGATGCTTGGTG+GGG | - | Chr5:6732291-6732310 | MsG0580024597.01.T01:CDS | 45.0% |
| ! | TGGTGGTGTCTCGAATGTAT+TGG | - | Chr5:6734797-6734816 | MsG0580024597.01.T01:CDS | 45.0% |
| ! | TTGATGGCATTGAAGAGTGC+TGG | - | Chr5:6732258-6732277 | MsG0580024597.01.T01:CDS | 45.0% |
| !! | CATGGGTGATGGAAGAAATC+AGG | - | Chr5:6732624-6732643 | MsG0580024597.01.T01:CDS | 45.0% |
| !! | GAAATGTTGGTGACTCTTGC+AGG | - | Chr5:6732433-6732452 | MsG0580024597.01.T01:CDS | 45.0% |
| !! | TTGAAGAGTGCTGGAGTTGA+AGG | - | Chr5:6732267-6732286 | MsG0580024597.01.T01:CDS | 45.0% |
| !! | AATCATTAATATAAATTATT+TGG | - | Chr5:6733443-6733462 | MsG0580024597.01.T01:CDS | 5.0% |
| AAGCATCAGCAGGGGCAATT+GGG | - | Chr5:6733902-6733921 | MsG0580024597.01.T01:intron | 50.0% | |
| AAGTGGGACTAGGTCCTTGT+GGG | - | Chr5:6733246-6733265 | MsG0580024597.01.T01:intron | 50.0% | |
| AGCAGGAAGAACTCCACTTC+AGG | - | Chr5:6732733-6732752 | MsG0580024597.01.T01:CDS | 50.0% | |
| ATGGCAACAAAGATGGCAGG+TGG | - | Chr5:6734357-6734376 | MsG0580024597.01.T01:CDS | 50.0% | |
| CAGGAAGTTCAAGTGGGACT+AGG | - | Chr5:6733236-6733255 | MsG0580024597.01.T01:intron | 50.0% | |
| GATTCAGTGCCTGTTCTAGC+AGG | - | Chr5:6732716-6732735 | MsG0580024597.01.T01:CDS | 50.0% | |
| GGAGTTCTTCCTGCTAGAAC+AGG | + | Chr5:6732728-6732747 | None:intergenic | 50.0% | |
| GGGCAATTGGGAAGAAAGAG+TGG | - | Chr5:6733914-6733933 | MsG0580024597.01.T01:intron | 50.0% | |
| !! | ATCCTTGGAAGCATCAGCAG+GGG | - | Chr5:6733894-6733913 | MsG0580024597.01.T01:intron | 50.0% |
| !! | CATCCTTGGAAGCATCAGCA+GGG | - | Chr5:6733893-6733912 | MsG0580024597.01.T01:intron | 50.0% |
| !! | TCATCCTTGGAAGCATCAGC+AGG | - | Chr5:6733892-6733911 | MsG0580024597.01.T01:intron | 50.0% |
| AGTGGGACTAGGTCCTTGTG+GGG | - | Chr5:6733247-6733266 | MsG0580024597.01.T01:intron | 55.0% | |
| ATGGCAGGTGGTGAACTTGC+TGG | - | Chr5:6734369-6734388 | MsG0580024597.01.T01:CDS | 55.0% | |
| CAAGTGGGACTAGGTCCTTG+TGG | - | Chr5:6733245-6733264 | MsG0580024597.01.T01:intron | 55.0% | |
| CCTTCACGGCCAACACTGAT+GGG | - | Chr5:6734756-6734775 | MsG0580024597.01.T01:CDS | 55.0% | |
| CGTACCGAACCCATCAGTGT+TGG | + | Chr5:6734768-6734787 | None:intergenic | 55.0% | |
| GGATATCTCAGCTCCCCACA+AGG | + | Chr5:6733263-6733282 | None:intergenic | 55.0% | |
| TCCATCACCCATGGAGGTAG+AGG | + | Chr5:6732617-6732636 | None:intergenic | 55.0% | |
| TCCTCTACCTCCATGGGTGA+TGG | - | Chr5:6732613-6732632 | MsG0580024597.01.T01:CDS | 55.0% | |
| TCCTTCACGGCCAACACTGA+TGG | - | Chr5:6734755-6734774 | MsG0580024597.01.T01:CDS | 55.0% | |
| ! | GAAGCATCAGCAGGGGCAAT+TGG | - | Chr5:6733901-6733920 | MsG0580024597.01.T01:intron | 55.0% |
| ! | GGTTGATGCTTGGTGGGGTT+TGG | - | Chr5:6732296-6732315 | MsG0580024597.01.T01:CDS | 55.0% |
| !! | ACGGCCAACACTGATGGGTT+CGG | - | Chr5:6734761-6734780 | MsG0580024597.01.T01:CDS | 55.0% |
| TGCCCCTGCTGATGCTTCCA+AGG | + | Chr5:6733899-6733918 | None:intergenic | 60.0% | |
| !! | CCCATCAGTGTTGGCCGTGA+AGG | + | Chr5:6734759-6734778 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 6731857 | 6734882 | 6731857 | ID=MsG0580024597.01;Name=MsG0580024597.01 |
| Chr5 | mRNA | 6731857 | 6734882 | 6731857 | ID=MsG0580024597.01.T01;Parent=MsG0580024597.01;Name=MsG0580024597.01.T01;_AED=0.34;_eAED=0.34;_QI=56|1|1|1|1|1|4|232|543 |
| Chr5 | exon | 6731857 | 6732856 | 6731857 | ID=MsG0580024597.01.T01:exon:25862;Parent=MsG0580024597.01.T01 |
| Chr5 | exon | 6733390 | 6733500 | 6733390 | ID=MsG0580024597.01.T01:exon:25861;Parent=MsG0580024597.01.T01 |
| Chr5 | exon | 6733919 | 6734129 | 6733919 | ID=MsG0580024597.01.T01:exon:25860;Parent=MsG0580024597.01.T01 |
| Chr5 | exon | 6734285 | 6734882 | 6734285 | ID=MsG0580024597.01.T01:exon:25859;Parent=MsG0580024597.01.T01 |
| Chr5 | five_prime_UTR | 6734827 | 6734882 | 6734827 | ID=MsG0580024597.01.T01:five_prime_utr;Parent=MsG0580024597.01.T01 |
| Chr5 | CDS | 6734285 | 6734826 | 6734285 | ID=MsG0580024597.01.T01:cds;Parent=MsG0580024597.01.T01 |
| Chr5 | CDS | 6733919 | 6734129 | 6733919 | ID=MsG0580024597.01.T01:cds;Parent=MsG0580024597.01.T01 |
| Chr5 | CDS | 6733390 | 6733500 | 6733390 | ID=MsG0580024597.01.T01:cds;Parent=MsG0580024597.01.T01 |
| Chr5 | CDS | 6732089 | 6732856 | 6732089 | ID=MsG0580024597.01.T01:cds;Parent=MsG0580024597.01.T01 |
| Chr5 | three_prime_UTR | 6731857 | 6732088 | 6731857 | ID=MsG0580024597.01.T01:three_prime_utr;Parent=MsG0580024597.01.T01 |
| Gene Sequence |
| Protein sequence |
