Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017783.01.T01 | ACJ85087.1 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 9.42E-122 | 353 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017783.01.T01 | Q9C6B3 | 80.556 | 180 | 34 | 1 | 1 | 179 | 1 | 180 | 1.60E-103 | 301 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017783.01.T01 | B7FK08 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 4.50e-122 | 353 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0180002486.01 | MsG0380017783.01 | 0.851971 | 6.267950e-61 | 1.290097e-57 |
MsG0380016873.01 | MsG0380017783.01 | 0.804409 | 2.190589e-49 | 1.128588e-46 |
MsG0380017783.01 | MsG0480021823.01 | 0.817794 | 2.740623e-52 | 2.015501e-49 |
MsG0380017783.01 | MsG0480023387.01 | 0.818583 | 1.817453e-52 | 1.365832e-49 |
MsG0380017783.01 | MsG0480023743.01 | 0.813961 | 1.963902e-51 | 1.300779e-48 |
MsG0380017783.01 | MsG0880046237.01 | 0.819001 | 1.460824e-52 | 1.110720e-49 |
MsG0380017783.01 | MsG0880046238.01 | 0.830936 | 2.217185e-55 | 2.370559e-52 |
MsG0380017783.01 | MsG0880046858.01 | 0.801450 | 8.951148e-49 | 4.276121e-46 |
MsG0280007707.01 | MsG0380017783.01 | 0.802204 | 6.269706e-49 | 3.052802e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017783.01.T01 | MTR_3g112020 | 97.765 | 179 | 4 | 0 | 1 | 179 | 1 | 179 | 2.04e-125 | 354 |
MsG0380017783.01.T01 | MTR_1g022405 | 82.778 | 180 | 30 | 1 | 1 | 179 | 1 | 180 | 2.82e-108 | 311 |
MsG0380017783.01.T01 | MTR_5g020850 | 76.923 | 182 | 41 | 1 | 1 | 181 | 1 | 182 | 2.24e-102 | 293 |
MsG0380017783.01.T01 | MTR_5g020850 | 77.222 | 180 | 40 | 1 | 1 | 179 | 1 | 180 | 8.94e-100 | 289 |
MsG0380017783.01.T01 | MTR_8g096820 | 38.849 | 139 | 85 | 0 | 41 | 179 | 56 | 194 | 7.07e-28 | 105 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0380017783.01.T01 | AT1G47260 | 80.556 | 180 | 34 | 1 | 1 | 179 | 1 | 180 | 1.63e-104 | 301 |
MsG0380017783.01.T01 | AT1G19580 | 80.556 | 180 | 34 | 1 | 1 | 179 | 1 | 180 | 2.26e-104 | 301 |
MsG0380017783.01.T01 | AT1G19580 | 80.447 | 179 | 34 | 1 | 1 | 178 | 1 | 179 | 3.01e-104 | 298 |
MsG0380017783.01.T01 | AT5G66510 | 72.222 | 180 | 49 | 1 | 1 | 179 | 1 | 180 | 2.36e-95 | 277 |
MsG0380017783.01.T01 | AT5G66510 | 68.063 | 191 | 49 | 2 | 1 | 179 | 1 | 191 | 7.90e-92 | 269 |
MsG0380017783.01.T01 | AT5G63510 | 38.849 | 139 | 85 | 0 | 41 | 179 | 55 | 193 | 7.82e-30 | 110 |
MsG0380017783.01.T01 | AT3G48680 | 37.410 | 139 | 87 | 0 | 41 | 179 | 59 | 197 | 5.79e-29 | 108 |
MsG0380017783.01.T01 | AT5G63510 | 34.337 | 166 | 82 | 3 | 41 | 179 | 55 | 220 | 1.84e-24 | 97.1 |
MsG0380017783.01.T01 | AT1G47420 | 55.814 | 86 | 24 | 2 | 1 | 85 | 1 | 73 | 2.63e-18 | 80.1 |
Find 58 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGGAAAAGGGTCATCAATT+TGG | 0.284605 | 3:+100611595 | MsG0380017783.01.T01:CDS |
AAGGTGTTGCCTACTATTAT+TGG | 0.284723 | 3:+100612543 | MsG0380017783.01.T01:CDS |
AGGTGTTGCCTACTATTATT+GGG | 0.302756 | 3:+100612544 | MsG0380017783.01.T01:CDS |
GGAATTGATTGAAGAAGAAA+TGG | 0.311067 | 3:+100611362 | MsG0380017783.01.T01:exon |
CTGGCGAGGTATGTCTAATT+TGG | 0.328127 | 3:+100612820 | MsG0380017783.01.T01:CDS |
GATGTTAACAGCATTAGAAT+TGG | 0.385870 | 3:+100612459 | MsG0380017783.01.T01:CDS |
GGACAGTTGATTCGGAAAAC+TGG | 0.385950 | 3:+100611414 | MsG0380017783.01.T01:CDS |
AAGACATCCTTATCAATAAC+AGG | 0.391261 | 3:-100611534 | None:intergenic |
GGTGATGTTCAGATTGGAAA+AGG | 0.410207 | 3:+100611582 | MsG0380017783.01.T01:CDS |
CAAGGCTCCTGTTATTGATA+AGG | 0.420602 | 3:+100611527 | MsG0380017783.01.T01:CDS |
ATGGGTGCAATTCTGCTTGA+TGG | 0.449196 | 3:+100612729 | MsG0380017783.01.T01:CDS |
ACAACGTTGGACAGTTGATT+CGG | 0.458915 | 3:+100611406 | MsG0380017783.01.T01:CDS |
ACATTATCCCCAATAATAGT+AGG | 0.462118 | 3:-100612552 | None:intergenic |
GTTGCAAAGTCAAATTTAAG+TGG | 0.474043 | 3:+100612519 | MsG0380017783.01.T01:CDS |
GTCATTGGTGATGTTCAGAT+TGG | 0.496337 | 3:+100611576 | MsG0380017783.01.T01:CDS |
CGTTGTATATCGCTCTTCCG+AGG | 0.496629 | 3:-100611389 | None:intergenic |
GCACCAAGTGCAGCTGTCAT+TGG | 0.497004 | 3:+100611561 | MsG0380017783.01.T01:CDS |
TTACCCTCCTCTGAATGAAA+GGG | 0.497632 | 3:+100611258 | None:intergenic |
TTGACTTTGCAACATGCACC+AGG | 0.501255 | 3:-100612509 | None:intergenic |
CAGAATACAAAGATTCCATC+TGG | 0.505231 | 3:+100612801 | MsG0380017783.01.T01:CDS |
ACATCGAAGAACAGCTCTCT+AGG | 0.510020 | 3:+100611478 | MsG0380017783.01.T01:CDS |
ATTACCCTCCTCTGAATGAA+AGG | 0.515453 | 3:+100611257 | None:intergenic |
GAATTGATTGAAGAAGAAAT+GGG | 0.516070 | 3:+100611363 | MsG0380017783.01.T01:exon |
AAAGGGTCATCAATTTGGTA+TGG | 0.518770 | 3:+100611600 | MsG0380017783.01.T01:CDS |
AACAGCATTAGAATTGGAAG+TGG | 0.524202 | 3:+100612465 | MsG0380017783.01.T01:CDS |
GTTGTATATCGCTCTTCCGA+GGG | 0.525693 | 3:-100611388 | None:intergenic |
TCTTTGTATTCTGCCTCACA+AGG | 0.530496 | 3:-100612791 | None:intergenic |
CATCAGAGACTGAGAGGTCG+AGG | 0.534656 | 3:-100611301 | None:intergenic |
AAAGTCAAATTTAAGTGGGA+AGG | 0.542666 | 3:+100612524 | MsG0380017783.01.T01:CDS |
TTTACATGGTTGCACTGTTG+AGG | 0.545648 | 3:+100612689 | MsG0380017783.01.T01:CDS |
TGGTTGCACTGTTGAGGATG+AGG | 0.551311 | 3:+100612695 | MsG0380017783.01.T01:CDS |
ATTGGGGATAATGTTACCAT+AGG | 0.554256 | 3:+100612561 | MsG0380017783.01.T01:CDS |
TTGCAAAGTCAAATTTAAGT+GGG | 0.554283 | 3:+100612520 | MsG0380017783.01.T01:CDS |
GTGATGTTCAGATTGGAAAA+GGG | 0.560739 | 3:+100611583 | MsG0380017783.01.T01:CDS |
GAAGAAGAAATGGGAACCCT+CGG | 0.561046 | 3:+100611372 | MsG0380017783.01.T01:exon |
TTGCTGCTGGAGCCCTTGTG+AGG | 0.564784 | 3:+100612778 | MsG0380017783.01.T01:CDS |
TCACCAATGACAGCTGCACT+TGG | 0.572379 | 3:-100611564 | None:intergenic |
TGGAAGTGGAACTAACCTAC+AGG | 0.572989 | 3:+100612479 | MsG0380017783.01.T01:CDS |
CGCCTCGGTTCTCATCTCCA+AGG | 0.576532 | 3:+100611450 | MsG0380017783.01.T01:CDS |
GTTCTTCGATGTAGCCACCT+TGG | 0.576656 | 3:-100611467 | None:intergenic |
CTGAGAGGTCGAGGTAGACG+TGG | 0.577266 | 3:-100611292 | None:intergenic |
ATTAGACATACCTCGCCAGA+TGG | 0.581701 | 3:-100612816 | None:intergenic |
GGTCAAGCCGTTGATCGCCT+CGG | 0.584423 | 3:+100611435 | MsG0380017783.01.T01:CDS |
ATGAGAACCGAGGCGATCAA+CGG | 0.590186 | 3:-100611442 | None:intergenic |
GAATTGCCCCTTTCATTCAG+AGG | 0.590559 | 3:-100611265 | None:intergenic |
TGGTATGGATCTGTATTGAG+AGG | 0.599692 | 3:+100611615 | MsG0380017783.01.T01:CDS |
TAACCTACAGGATAACTCCC+TGG | 0.618045 | 3:+100612491 | MsG0380017783.01.T01:CDS |
TACCCTCCTCTGAATGAAAG+GGG | 0.626071 | 3:+100611259 | None:intergenic |
TACAAAGATTCCATCTGGCG+AGG | 0.640116 | 3:+100612806 | MsG0380017783.01.T01:CDS |
GGTGTTGCCTACTATTATTG+GGG | 0.645236 | 3:+100612545 | MsG0380017783.01.T01:CDS |
CTTGAGCATCAGAGACTGAG+AGG | 0.647116 | 3:-100611307 | None:intergenic |
CTCGGTTCTCATCTCCAAGG+TGG | 0.666923 | 3:+100611453 | MsG0380017783.01.T01:CDS |
CTTTGTATTCTGCCTCACAA+GGG | 0.673013 | 3:-100612790 | None:intergenic |
TATCTTGAACATATTTGACA+AGG | 0.679511 | 3:+100611509 | MsG0380017783.01.T01:CDS |
TGACTTTGCAACATGCACCA+GGG | 0.689090 | 3:-100612508 | None:intergenic |
CACCTTGGAGATGAGAACCG+AGG | 0.703858 | 3:-100611452 | None:intergenic |
GCACCAGGGAGTTATCCTGT+AGG | 0.704606 | 3:-100612494 | None:intergenic |
GGAAGAGCGATATACAACGT+TGG | 0.710692 | 3:+100611393 | MsG0380017783.01.T01:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTACCAAATTTTAAAAAAA+GGG | - | Chr3:100611920-100611939 | None:intergenic | 10.0% |
!!! | TATTACCAAATTTTAAAAAA+AGG | - | Chr3:100611921-100611940 | None:intergenic | 10.0% |
!!! | TTTTTTAAAATTTGGTAATA+GGG | + | Chr3:100611921-100611940 | MsG0380017783.01.T01:intron | 10.0% |
!!! | TTTTTTTAAAATTTGGTAAT+AGG | + | Chr3:100611920-100611939 | MsG0380017783.01.T01:intron | 10.0% |
!! | GATATGAATTTCTAAATATT+TGG | + | Chr3:100611662-100611681 | MsG0380017783.01.T01:intron | 15.0% |
!! | TATATGAAAATATGTGTTAT+AGG | + | Chr3:100612032-100612051 | MsG0380017783.01.T01:intron | 15.0% |
!!! | ATTACCCTTTTTTTAAAATT+TGG | + | Chr3:100611913-100611932 | MsG0380017783.01.T01:intron | 15.0% |
!!! | TTTATTCTATCTTTTGTTAT+AGG | + | Chr3:100612143-100612162 | MsG0380017783.01.T01:intron | 15.0% |
!!! | TTTTTGAAAATATGTGTTAT+AGG | + | Chr3:100612071-100612090 | MsG0380017783.01.T01:intron | 15.0% |
!! | AATCAAATAATTGGTATGTT+TGG | + | Chr3:100611708-100611727 | MsG0380017783.01.T01:intron | 20.0% |
!! | CTATACTTAATAATTACATG+CGG | + | Chr3:100612395-100612414 | MsG0380017783.01.T01:intron | 20.0% |
!! | GTTATAGGATCTTATAATTA+GGG | + | Chr3:100612086-100612105 | MsG0380017783.01.T01:intron | 20.0% |
!! | TAAACACATGATAATTTGAA+AGG | - | Chr3:100611894-100611913 | None:intergenic | 20.0% |
!! | TGTTATAGGATCTTATAATT+AGG | + | Chr3:100612085-100612104 | MsG0380017783.01.T01:intron | 20.0% |
!!! | AGTATAAGTGTATTTTCATA+AGG | - | Chr3:100611847-100611866 | None:intergenic | 20.0% |
!!! | ATTTTGAAACAATGTTTTCA+TGG | + | Chr3:100612309-100612328 | MsG0380017783.01.T01:intron | 20.0% |
!!! | TGAAAGGAGTATTATAATTA+GGG | - | Chr3:100611878-100611897 | None:intergenic | 20.0% |
!!! | TTGAAAGGAGTATTATAATT+AGG | - | Chr3:100611879-100611898 | None:intergenic | 20.0% |
!!! | TTTTGAAACAATGTTTTCAT+GGG | + | Chr3:100612310-100612329 | MsG0380017783.01.T01:intron | 20.0% |
! | CATATTTGAACTTGACATTA+TGG | + | Chr3:100612430-100612449 | MsG0380017783.01.T01:intron | 25.0% |
! | GAATTGATTGAAGAAGAAAT+GGG | + | Chr3:100611363-100611382 | MsG0380017783.01.T01:exon | 25.0% |
! | TATCTTGAACATATTTGACA+AGG | + | Chr3:100611509-100611528 | MsG0380017783.01.T01:CDS | 25.0% |
! | TTGCAAAGTCAAATTTAAGT+GGG | + | Chr3:100612520-100612539 | MsG0380017783.01.T01:CDS | 25.0% |
!! | TGCTTTTGCAATCAAATAAT+TGG | + | Chr3:100611699-100611718 | MsG0380017783.01.T01:intron | 25.0% |
AAAGTCAAATTTAAGTGGGA+AGG | + | Chr3:100612524-100612543 | MsG0380017783.01.T01:CDS | 30.0% | |
AAGACATCCTTATCAATAAC+AGG | - | Chr3:100611537-100611556 | None:intergenic | 30.0% | |
ACATTATCCCCAATAATAGT+AGG | - | Chr3:100612555-100612574 | None:intergenic | 30.0% | |
GATGTTAACAGCATTAGAAT+TGG | + | Chr3:100612459-100612478 | MsG0380017783.01.T01:CDS | 30.0% | |
GGAATTGATTGAAGAAGAAA+TGG | + | Chr3:100611362-100611381 | MsG0380017783.01.T01:exon | 30.0% | |
GTTGCAAAGTCAAATTTAAG+TGG | + | Chr3:100612519-100612538 | MsG0380017783.01.T01:CDS | 30.0% | |
TAGGATCTTATAATTAGGGA+CGG | + | Chr3:100612090-100612109 | MsG0380017783.01.T01:intron | 30.0% | |
TCAAGTTCAAATATGATTGC+CGG | - | Chr3:100612425-100612444 | None:intergenic | 30.0% | |
TGTATAAAATTTCACTGAGC+AGG | + | Chr3:100612654-100612673 | MsG0380017783.01.T01:intron | 30.0% | |
TTGAACTTGACATTATGGAT+AGG | + | Chr3:100612435-100612454 | MsG0380017783.01.T01:intron | 30.0% | |
! | AAACAAACCTGAAAAAGTGT+TGG | + | Chr3:100611334-100611353 | MsG0380017783.01.T01:five_prime_UTR | 30.0% |
! | CTAGAGAGCATATAGAAATA+AGG | - | Chr3:100611820-100611839 | None:intergenic | 30.0% |
!! | CTTATTTCTATATGCTCTCT+AGG | + | Chr3:100611818-100611837 | MsG0380017783.01.T01:intron | 30.0% |
AAAGGGTCATCAATTTGGTA+TGG | + | Chr3:100611600-100611619 | MsG0380017783.01.T01:CDS | 35.0% | |
AACAGCATTAGAATTGGAAG+TGG | + | Chr3:100612465-100612484 | MsG0380017783.01.T01:CDS | 35.0% | |
AATAATTACATGCGGCAAAC+CGG | + | Chr3:100612403-100612422 | MsG0380017783.01.T01:intron | 35.0% | |
AATTGTTGATCGTGGCAAAA+AGG | - | Chr3:100612594-100612613 | None:intergenic | 35.0% | |
ATGTAGCAAATTGTTGATCG+TGG | - | Chr3:100612602-100612621 | None:intergenic | 35.0% | |
ATTGGGGATAATGTTACCAT+AGG | + | Chr3:100612561-100612580 | MsG0380017783.01.T01:CDS | 35.0% | |
CAGAATACAAAGATTCCATC+TGG | + | Chr3:100612801-100612820 | MsG0380017783.01.T01:CDS | 35.0% | |
GTGATGTTCAGATTGGAAAA+GGG | + | Chr3:100611583-100611602 | MsG0380017783.01.T01:CDS | 35.0% | |
TTGGAAAAGGGTCATCAATT+TGG | + | Chr3:100611595-100611614 | MsG0380017783.01.T01:CDS | 35.0% | |
! | AGGTGTTGCCTACTATTATT+GGG | + | Chr3:100612544-100612563 | MsG0380017783.01.T01:CDS | 35.0% |
! | CAGGGTCTTATAAATAAGGA+CGG | + | Chr3:100612005-100612024 | MsG0380017783.01.T01:intron | 35.0% |
!! | AAGGTGTTGCCTACTATTAT+TGG | + | Chr3:100612543-100612562 | MsG0380017783.01.T01:CDS | 35.0% |
AAAAATGCTATGGTTGCTGC+TGG | + | Chr3:100612765-100612784 | MsG0380017783.01.T01:CDS | 40.0% | |
ACAACGTTGGACAGTTGATT+CGG | + | Chr3:100611406-100611425 | MsG0380017783.01.T01:CDS | 40.0% | |
CAAGGCTCCTGTTATTGATA+AGG | + | Chr3:100611527-100611546 | MsG0380017783.01.T01:CDS | 40.0% | |
CGTCGTTGAGAAAAATGCTA+TGG | + | Chr3:100612755-100612774 | MsG0380017783.01.T01:CDS | 40.0% | |
CTTTGTATTCTGCCTCACAA+GGG | - | Chr3:100612793-100612812 | None:intergenic | 40.0% | |
GATCTTATAATTAGGGACGG+AGG | + | Chr3:100612093-100612112 | MsG0380017783.01.T01:intron | 40.0% | |
GGATCTGTATTGAGAGGTAA+GGG | + | Chr3:100611621-100611640 | MsG0380017783.01.T01:intron | 40.0% | |
GGTGATGTTCAGATTGGAAA+AGG | + | Chr3:100611582-100611601 | MsG0380017783.01.T01:CDS | 40.0% | |
TCTTTGTATTCTGCCTCACA+AGG | - | Chr3:100612794-100612813 | None:intergenic | 40.0% | |
TGGATCTGTATTGAGAGGTA+AGG | + | Chr3:100611620-100611639 | MsG0380017783.01.T01:intron | 40.0% | |
TGGTATGGATCTGTATTGAG+AGG | + | Chr3:100611615-100611634 | MsG0380017783.01.T01:CDS | 40.0% | |
TTTACATGGTTGCACTGTTG+AGG | + | Chr3:100612689-100612708 | MsG0380017783.01.T01:CDS | 40.0% | |
! | GATGAGGCTTTTGTTGGTAT+GGG | + | Chr3:100612711-100612730 | MsG0380017783.01.T01:CDS | 40.0% |
! | GGTGTTGCCTACTATTATTG+GGG | + | Chr3:100612545-100612564 | MsG0380017783.01.T01:CDS | 40.0% |
! | GTCGCAGGGTCTTATAAATA+AGG | + | Chr3:100612001-100612020 | MsG0380017783.01.T01:intron | 40.0% |
!! | CCTGAAAAAGTGTTGGCATT+AGG | + | Chr3:100611341-100611360 | MsG0380017783.01.T01:five_prime_UTR | 40.0% |
!! | GTCATTGGTGATGTTCAGAT+TGG | + | Chr3:100611576-100611595 | MsG0380017783.01.T01:CDS | 40.0% |
!!! | CCTAATGCCAACACTTTTTC+AGG | - | Chr3:100611344-100611363 | None:intergenic | 40.0% |
!!! | GGTCATAGTGCTGTTTTACA+TGG | + | Chr3:100612675-100612694 | MsG0380017783.01.T01:intron | 40.0% |
ACATCGAAGAACAGCTCTCT+AGG | + | Chr3:100611478-100611497 | MsG0380017783.01.T01:CDS | 45.0% | |
ATGGGTGCAATTCTGCTTGA+TGG | + | Chr3:100612729-100612748 | MsG0380017783.01.T01:CDS | 45.0% | |
ATGTGCGTAAAATGTGTCGC+AGG | + | Chr3:100611986-100612005 | MsG0380017783.01.T01:intron | 45.0% | |
ATTAGACATACCTCGCCAGA+TGG | - | Chr3:100612819-100612838 | None:intergenic | 45.0% | |
CTGGCGAGGTATGTCTAATT+TGG | + | Chr3:100612820-100612839 | MsG0380017783.01.T01:CDS | 45.0% | |
GAAGAAGAAATGGGAACCCT+CGG | + | Chr3:100611372-100611391 | MsG0380017783.01.T01:exon | 45.0% | |
GCAAAAAGGTCACTCACCTA+TGG | - | Chr3:100612580-100612599 | None:intergenic | 45.0% | |
GGAAGAGCGATATACAACGT+TGG | + | Chr3:100611393-100611412 | MsG0380017783.01.T01:CDS | 45.0% | |
GTTGTATATCGCTCTTCCGA+GGG | - | Chr3:100611391-100611410 | None:intergenic | 45.0% | |
TAACCTACAGGATAACTCCC+TGG | + | Chr3:100612491-100612510 | MsG0380017783.01.T01:CDS | 45.0% | |
TACAAAGATTCCATCTGGCG+AGG | + | Chr3:100612806-100612825 | MsG0380017783.01.T01:CDS | 45.0% | |
TGACTTTGCAACATGCACCA+GGG | - | Chr3:100612511-100612530 | None:intergenic | 45.0% | |
TGGAAGTGGAACTAACCTAC+AGG | + | Chr3:100612479-100612498 | MsG0380017783.01.T01:CDS | 45.0% | |
TGTGCGTAAAATGTGTCGCA+GGG | + | Chr3:100611987-100612006 | MsG0380017783.01.T01:intron | 45.0% | |
TTGACTTTGCAACATGCACC+AGG | - | Chr3:100612512-100612531 | None:intergenic | 45.0% | |
! | GGATGAGGCTTTTGTTGGTA+TGG | + | Chr3:100612710-100612729 | MsG0380017783.01.T01:CDS | 45.0% |
! | GTTGAGGATGAGGCTTTTGT+TGG | + | Chr3:100612705-100612724 | MsG0380017783.01.T01:CDS | 45.0% |
!! | GGACAGTTGATTCGGAAAAC+TGG | + | Chr3:100611414-100611433 | MsG0380017783.01.T01:CDS | 45.0% |
ATGAGAACCGAGGCGATCAA+CGG | - | Chr3:100611445-100611464 | None:intergenic | 50.0% | |
CGTTGTATATCGCTCTTCCG+AGG | - | Chr3:100611392-100611411 | None:intergenic | 50.0% | |
CTTGAGCATCAGAGACTGAG+AGG | - | Chr3:100611310-100611329 | None:intergenic | 50.0% | |
GTTCTTCGATGTAGCCACCT+TGG | - | Chr3:100611470-100611489 | None:intergenic | 50.0% | |
TCACCAATGACAGCTGCACT+TGG | - | Chr3:100611567-100611586 | None:intergenic | 50.0% | |
TGGTTGCACTGTTGAGGATG+AGG | + | Chr3:100612695-100612714 | MsG0380017783.01.T01:CDS | 50.0% | |
CACCTTGGAGATGAGAACCG+AGG | - | Chr3:100611455-100611474 | None:intergenic | 55.0% | |
CATCAGAGACTGAGAGGTCG+AGG | - | Chr3:100611304-100611323 | None:intergenic | 55.0% | |
CTCGGTTCTCATCTCCAAGG+TGG | + | Chr3:100611453-100611472 | MsG0380017783.01.T01:CDS | 55.0% | |
GCACCAAGTGCAGCTGTCAT+TGG | + | Chr3:100611561-100611580 | MsG0380017783.01.T01:CDS | 55.0% | |
GCACCAGGGAGTTATCCTGT+AGG | - | Chr3:100612497-100612516 | None:intergenic | 55.0% | |
CGCCTCGGTTCTCATCTCCA+AGG | + | Chr3:100611450-100611469 | MsG0380017783.01.T01:CDS | 60.0% | |
CTGAGAGGTCGAGGTAGACG+TGG | - | Chr3:100611295-100611314 | None:intergenic | 60.0% | |
GGTCAAGCCGTTGATCGCCT+CGG | + | Chr3:100611435-100611454 | MsG0380017783.01.T01:CDS | 60.0% | |
TTGCTGCTGGAGCCCTTGTG+AGG | + | Chr3:100612778-100612797 | MsG0380017783.01.T01:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr3 | gene | 100611268 | 100612848 | 100611268 | ID=MsG0380017783.01;Name=MsG0380017783.01 |
Chr3 | mRNA | 100611268 | 100612848 | 100611268 | ID=MsG0380017783.01.T01;Parent=MsG0380017783.01;Name=MsG0380017783.01.T01;_AED=0.48;_eAED=0.49;_QI=113|1|0.66|1|1|1|3|0|184 |
Chr3 | exon | 100611268 | 100611636 | 100611268 | ID=MsG0380017783.01.T01:exon:2338;Parent=MsG0380017783.01.T01 |
Chr3 | exon | 100612457 | 100612582 | 100612457 | ID=MsG0380017783.01.T01:exon:2339;Parent=MsG0380017783.01.T01 |
Chr3 | exon | 100612676 | 100612848 | 100612676 | ID=MsG0380017783.01.T01:exon:2340;Parent=MsG0380017783.01.T01 |
Chr3 | five_prime_UTR | 100611268 | 100611380 | 100611268 | ID=MsG0380017783.01.T01:five_prime_utr;Parent=MsG0380017783.01.T01 |
Chr3 | CDS | 100611381 | 100611636 | 100611381 | ID=MsG0380017783.01.T01:cds;Parent=MsG0380017783.01.T01 |
Chr3 | CDS | 100612457 | 100612582 | 100612457 | ID=MsG0380017783.01.T01:cds;Parent=MsG0380017783.01.T01 |
Chr3 | CDS | 100612676 | 100612848 | 100612676 | ID=MsG0380017783.01.T01:cds;Parent=MsG0380017783.01.T01 |
Gene Sequence |
Protein sequence |